Query 032269
Match_columns 144
No_of_seqs 240 out of 1375
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 19:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pia_A Phthalate dioxygenase r 99.9 2.5E-27 8.5E-32 191.0 11.7 123 4-136 198-321 (321)
2 1awd_A Ferredoxin; electron tr 99.9 1.1E-26 3.7E-31 157.8 10.1 94 50-143 1-94 (94)
3 1frr_A Ferredoxin I; electron 99.9 1.5E-26 5.2E-31 156.9 9.8 94 50-143 2-95 (95)
4 1a70_A Ferredoxin; iron-sulfur 99.9 1.6E-26 5.6E-31 157.8 9.2 96 49-144 2-97 (97)
5 1czp_A Ferredoxin I; [2Fe-2S] 99.9 2.6E-26 8.8E-31 157.0 9.9 95 49-143 2-98 (98)
6 1iue_A Ferredoxin; electron tr 99.9 2.3E-26 7.7E-31 157.4 8.7 95 49-143 2-96 (98)
7 1frd_A Heterocyst [2Fe-2S] fer 99.9 8.7E-26 3E-30 154.2 10.0 94 49-142 2-97 (98)
8 1wri_A Ferredoxin II, ferredox 99.9 8.3E-26 2.8E-30 153.2 9.4 92 50-142 2-93 (93)
9 1doi_A 2Fe-2S ferredoxin; halo 99.9 3.2E-25 1.1E-29 159.0 5.6 111 27-138 4-117 (128)
10 1jq4_A Methane monooxygenase c 99.9 1E-24 3.5E-29 149.0 3.5 91 49-139 4-97 (98)
11 3lxf_A Ferredoxin; iron, iron- 99.9 4.8E-24 1.7E-28 147.6 5.4 90 51-140 2-104 (104)
12 3hui_A Ferredoxin; cytochrome 99.9 1.1E-23 3.9E-28 150.6 5.7 94 47-140 19-125 (126)
13 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 4.4E-23 1.5E-27 144.3 7.2 91 50-141 2-105 (113)
14 2y5c_A Adrenodoxin-like protei 99.9 1.6E-23 5.4E-28 145.7 4.7 92 49-140 5-108 (109)
15 1xlq_A Putidaredoxin, PDX; [2F 99.9 3.7E-23 1.3E-27 143.0 6.5 90 51-140 2-105 (106)
16 1uwm_A Ferredoxin VI, FDVI; el 99.9 4.3E-23 1.5E-27 142.7 5.4 90 51-140 2-105 (106)
17 1b9r_A Protein (terpredoxin); 99.9 1.4E-23 4.8E-28 144.9 2.8 89 51-139 2-104 (105)
18 2bt6_A Adrenodoxin 1; rutheniu 99.9 4.1E-23 1.4E-27 143.3 4.9 89 49-137 6-108 (108)
19 2wlb_A ETP1-FD, electron trans 99.9 3.6E-22 1.2E-26 137.4 6.8 89 49-137 3-103 (103)
20 1i7h_A Ferredoxin; 2Fe-2S,elec 99.9 1.2E-21 4.1E-26 136.6 8.1 91 50-141 2-105 (111)
21 1krh_A Benzoate 1,2-dioxygenas 99.9 1.6E-21 5.6E-26 157.3 9.8 93 47-139 1-98 (338)
22 3zyy_X Iron-sulfur cluster bin 99.9 1E-21 3.5E-26 171.2 9.0 94 47-142 1-95 (631)
23 1l5p_A Ferredoxin; [2Fe-2S] cl 99.8 1.3E-20 4.6E-25 127.5 5.8 81 52-135 3-92 (93)
24 3n9z_C Adrenodoxin; cytochrome 99.8 1.4E-21 4.8E-26 139.2 -2.0 94 47-140 3-110 (123)
25 3i9v_3 NADH-quinone oxidoreduc 99.1 2.1E-10 7.2E-15 102.2 7.5 86 50-139 2-98 (783)
26 1t3q_A Quinoline 2-oxidoreduct 98.9 2.7E-09 9.2E-14 79.1 7.3 67 49-136 11-82 (168)
27 3c8y_A Iron hydrogenase 1; dit 98.8 7.6E-09 2.6E-13 89.4 7.7 69 50-139 2-77 (574)
28 1kf6_B Fumarate reductase iron 98.7 1.6E-08 5.4E-13 78.2 6.4 58 61-136 26-92 (243)
29 2bs2_B Quinol-fumarate reducta 98.5 8E-08 2.7E-12 74.2 5.0 58 61-136 26-93 (241)
30 1ffv_A CUTS, iron-sulfur prote 98.5 3.1E-07 1.1E-11 67.8 7.6 46 50-98 6-54 (163)
31 1rm6_C 4-hydroxybenzoyl-COA re 98.5 2.6E-07 8.8E-12 68.0 6.9 65 50-135 5-74 (161)
32 3hrd_D Nicotinate dehydrogenas 98.4 3.7E-07 1.3E-11 67.3 6.5 47 50-98 6-54 (160)
33 1n62_A Carbon monoxide dehydro 98.4 6.9E-07 2.4E-11 66.1 6.6 46 50-98 6-54 (166)
34 2wdq_B Succinate dehydrogenase 98.3 4.3E-07 1.5E-11 69.9 5.0 52 61-130 23-81 (238)
35 2h88_B Succinate dehydrogenase 98.2 1.6E-06 5.3E-11 67.6 5.3 58 61-136 33-101 (252)
36 3vr8_B Iron-sulfur subunit of 97.6 4E-05 1.4E-09 61.0 4.5 41 61-102 57-104 (282)
37 3nvw_A Xanthine dehydrogenase/ 97.4 0.00015 5.3E-09 53.4 4.6 48 49-99 4-55 (164)
38 2w3s_A Xanthine dehydrogenase; 97.3 0.00031 1.1E-08 59.3 6.1 47 50-99 3-52 (462)
39 1vlb_A Aldehyde oxidoreductase 97.3 0.00034 1.2E-08 63.4 6.7 47 50-98 4-52 (907)
40 1dgj_A Aldehyde oxidoreductase 97.2 0.00042 1.4E-08 62.8 5.6 47 50-98 4-52 (907)
41 1y56_A Hypothetical protein PH 96.9 0.0011 3.9E-08 55.4 5.8 45 49-98 15-66 (493)
42 2gag_A Heterotetrameric sarcos 95.6 0.022 7.5E-07 51.7 6.9 53 43-99 16-79 (965)
43 3unc_A Xanthine dehydrogenase/ 95.6 0.013 4.5E-07 55.1 5.3 47 50-99 6-56 (1332)
44 3zyv_A AOH1; oxidoreductase, m 92.8 0.13 4.4E-06 48.5 5.4 35 65-99 24-60 (1335)
45 2gpj_A Siderophore-interacting 91.4 0.026 9E-07 43.1 -0.8 34 4-38 196-230 (252)
46 1ep3_B Dihydroorotate dehydrog 72.6 2.2 7.4E-05 32.1 2.7 29 70-99 205-239 (262)
47 3u7z_A Putative metal binding 72.4 5.6 0.00019 26.5 4.4 32 47-79 6-40 (101)
48 2l32_A Small archaeal modifier 71.2 6.2 0.00021 24.5 4.1 33 50-83 3-35 (74)
49 3ny5_A Serine/threonine-protei 69.5 6.1 0.00021 26.2 3.9 44 47-99 11-59 (96)
50 1c1y_B Proto-onkogene serine/t 68.7 6.5 0.00022 25.0 3.8 43 52-99 4-47 (77)
51 1wxm_A A-RAF proto-oncogene se 63.7 7.1 0.00024 25.4 3.3 28 51-78 9-37 (86)
52 3hvz_A Uncharacterized protein 63.2 7.6 0.00026 24.5 3.4 31 51-82 7-37 (78)
53 2l05_A Serine/threonine-protei 60.7 11 0.00037 24.9 3.8 40 51-99 19-63 (95)
54 2al3_A TUG long isoform; TUG U 59.5 9.7 0.00033 24.9 3.4 31 51-81 11-46 (90)
55 1tll_A Nitric-oxide synthase, 57.5 1.6 5.6E-05 38.2 -0.8 36 4-39 607-659 (688)
56 2kmm_A Guanosine-3',5'-BIS(dip 57.0 10 0.00035 22.6 3.1 30 50-82 3-32 (73)
57 1ep3_B Dihydroorotate dehydrog 56.8 2.4 8.1E-05 31.9 0.1 29 4-35 196-224 (262)
58 2k5p_A THis protein, thiamine- 55.3 13 0.00046 23.1 3.5 27 51-81 2-30 (78)
59 1rrb_A RAF-1 RBD, RAF proto-on 55.3 15 0.00052 24.7 3.9 40 51-99 20-64 (107)
60 1tyg_B YJBS; alpha beta barrel 52.6 12 0.00041 24.0 3.0 28 50-81 21-49 (87)
61 1ryj_A Unknown; beta/alpha pro 50.7 35 0.0012 20.4 4.9 32 50-81 5-36 (70)
62 1uh6_A Ubiquitin-like 5; beta- 50.2 27 0.00092 23.0 4.5 37 47-83 26-67 (100)
63 2k02_A Ferrous iron transport 49.9 6.8 0.00023 25.3 1.4 25 70-94 35-64 (87)
64 3kdv_A DDRB, DNA damage respon 48.3 23 0.00077 25.7 4.1 31 48-78 6-37 (184)
65 3plu_A Ubiquitin-like modifier 46.9 21 0.00072 23.3 3.5 35 48-82 20-59 (93)
66 1xn7_A Hypothetical protein YH 46.8 11 0.00036 23.7 2.0 26 70-95 35-65 (78)
67 2kl0_A Putative thiamin biosyn 44.9 24 0.0008 21.7 3.4 27 51-82 2-28 (73)
68 1f0z_A THis protein; ubiquitin 43.7 21 0.00071 21.1 3.0 27 51-81 2-28 (66)
69 1v86_A DNA segment, CHR 7, way 41.9 44 0.0015 21.1 4.5 34 49-82 17-54 (95)
70 1wwt_A Threonyl-tRNA synthetas 39.0 50 0.0017 20.3 4.4 32 50-84 12-44 (88)
71 1e0g_A Membrane-bound lytic mu 38.6 17 0.00057 19.6 1.8 21 62-82 4-24 (48)
72 1wf9_A NPL4 family protein; be 33.5 68 0.0023 20.7 4.5 33 50-82 8-45 (107)
73 2lg4_A Aurelin; antimicrobial 39.4 9 0.00031 21.2 0.0 17 77-94 24-40 (40)
74 3kwl_A Uncharacterized protein 32.4 60 0.002 27.2 5.0 36 61-104 45-80 (514)
75 1wgd_A Homocysteine-responsive 30.6 60 0.002 20.1 3.7 28 47-74 5-35 (93)
76 2uyz_B Small ubiquitin-related 30.5 57 0.0019 19.3 3.5 36 47-82 1-41 (79)
77 1v6e_A Cytoskeleton-associated 30.1 60 0.002 20.3 3.7 28 47-74 5-34 (95)
78 2cu3_A Unknown function protei 28.5 38 0.0013 19.8 2.3 25 52-81 2-26 (64)
79 1wx8_A Riken cDNA 4931431F19; 28.4 1E+02 0.0035 19.0 4.6 27 48-74 16-42 (96)
80 3phx_B Ubiquitin-like protein 27.7 84 0.0029 18.5 3.9 33 50-82 5-42 (79)
81 2djp_A Hypothetical protein SB 27.6 29 0.001 20.9 1.7 22 61-82 16-37 (77)
82 2klc_A Ubiquilin-1; ubiquitin- 27.1 77 0.0026 20.1 3.8 28 47-74 23-50 (101)
83 3mtn_B UBA80, ubcep1, ubiquiti 26.5 86 0.0029 18.5 3.9 25 50-74 4-29 (85)
84 1wh3_A 59 kDa 2'-5'-oligoadeny 26.0 82 0.0028 18.9 3.7 27 49-75 7-34 (87)
85 2kan_A Uncharacterized protein 25.9 84 0.0029 19.7 3.8 26 49-74 15-40 (94)
86 1wgg_A Ubiquitin carboxyl-term 25.5 61 0.0021 20.5 3.1 35 49-83 7-46 (96)
87 2pg3_A Queuosine biosynthesis 25.5 30 0.001 25.2 1.7 27 68-94 166-201 (232)
88 2kdi_A Ubiquitin, vacuolar pro 25.3 1.4E+02 0.0049 19.3 5.7 77 49-136 9-90 (114)
89 2pjh_A Protein NPL4, nuclear p 25.0 35 0.0012 21.1 1.8 27 50-76 5-31 (80)
90 2hj1_A Hypothetical protein; s 24.9 55 0.0019 21.3 2.8 21 61-81 28-48 (97)
91 3p42_A Predicted protein; beta 24.3 36 0.0012 25.7 2.0 33 48-80 2-34 (236)
92 1v5t_A 8430435I17RIK protein; 23.6 50 0.0017 20.5 2.3 33 50-82 8-45 (90)
93 1wx7_A Ubiquilin 3; ubiquitin- 23.3 1.3E+02 0.0046 19.0 4.5 27 49-75 17-43 (106)
94 1yqb_A Ubiquilin 3; structural 23.1 83 0.0029 20.0 3.4 26 49-74 22-47 (100)
95 2bwf_A Ubiquitin-like protein 22.8 87 0.003 18.1 3.3 25 50-75 5-30 (77)
96 1v2y_A 3300001G02RIK protein; 22.3 1.1E+02 0.0039 19.9 4.0 25 50-74 8-33 (105)
97 1wju_A NEDD8 ultimate buster-1 20.8 97 0.0033 20.2 3.4 38 45-84 13-59 (100)
98 2wyq_A HHR23A, UV excision rep 20.7 1.2E+02 0.0041 17.9 3.7 25 50-74 6-31 (85)
99 2hj8_A Interferon-induced 17 k 20.4 1E+02 0.0035 18.8 3.4 27 49-75 4-31 (88)
100 1tke_A Threonyl-tRNA synthetas 20.3 74 0.0025 23.3 3.0 25 51-78 3-27 (224)
No 1
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.94 E-value=2.5e-27 Score=191.02 Aligned_cols=123 Identities=20% Similarity=0.422 Sum_probs=105.5
Q ss_pred ccccccchHHHhcCCcccccCCCCCceeeeccCCcCCCCccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCC
Q 032269 4 LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLP 83 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~F~~~~~~~~~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~ 83 (144)
+|||..|+..+++.+.. .+ ..+||+|.|+.+..... ....++|+| .+++. ++++++|+|||++++++|++++
T Consensus 198 vCGP~~m~~~v~~~l~~--~~-~~~i~~E~F~~~~~~~~---~~~~~~v~~-~~~~~-~~~~~~~~~ll~a~~~~g~~~~ 269 (321)
T 2pia_A 198 CCGPQALMDTVRDMTGH--WP-SGTVHFESFGATNTNAR---ENTPFTVRL-SRSGT-SFEIPANRSILEVLRDANVRVP 269 (321)
T ss_dssp EESCHHHHHHHHHHTTT--SC-TTCEEEECCCCCCCCCS---CCCCEEEEE-TTTCC-EEEECTTSCHHHHHHHTTCCCC
T ss_pred EECCHHHHHHHHHHHHh--CC-HhhEEEEecCCCCCCCC---CCccEEEEE-eCCCe-EEEECCCCcHHHHHHHcCCCCC
Confidence 79999999999998877 44 48999999987542211 123589999 67775 7999999999999999999999
Q ss_pred CCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC-eEEEc
Q 032269 84 YSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD-VTIET 136 (144)
Q Consensus 84 ~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d-l~I~~ 136 (144)
++|+.|.||+|+++|++|++++.+ ..|++++. +|++|+||++|.+| ++|++
T Consensus 270 ~~C~~G~Cg~C~~~v~~G~~~~~~-~~l~~~e~-~g~~L~C~~~~~~d~~~i~l 321 (321)
T 2pia_A 270 SSCESGTCGSCKTALCSGEADHRD-MVLRDDEK-GTQIMVCVSRAKSAELVLDL 321 (321)
T ss_dssp CSCSSSSSCTTEEEEEESCEECCC-SSCCTTTT-TTEEETTTCEESSSEEEECC
T ss_pred CCCCCCCCCCCEEEEecCcccccc-CCCChHHH-CCeEEEeEeEECCCcEEEeC
Confidence 999999999999999999998766 57888888 99999999999998 88864
No 2
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.94 E-value=1.1e-26 Score=157.78 Aligned_cols=94 Identities=79% Similarity=1.269 Sum_probs=85.9
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT 129 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~ 129 (144)
|+|+|+.++|.+++++++|+|||++++++|+.+|++|+.|.||+|+|+|++|++++.+...|+++++++|+||+||+++.
T Consensus 1 ~~v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~ 80 (94)
T 1awd_A 1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPT 80 (94)
T ss_dssp CEEEEEETTEEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES
T ss_pred CEEEEEeCCCcEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEEC
Confidence 46788546664589999999999999999999999999999999999999999998888889988888999999999999
Q ss_pred CCeEEEcCCccccc
Q 032269 130 SDVTIETHKEEELA 143 (144)
Q Consensus 130 ~dl~I~~~~~~~~~ 143 (144)
+|++|++++++++|
T Consensus 81 ~d~~i~~~~~~~~~ 94 (94)
T 1awd_A 81 SDVTILTHQEAALY 94 (94)
T ss_dssp SCEEEECCCGGGGC
T ss_pred CCEEEEecchhccC
Confidence 99999999988876
No 3
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.94 E-value=1.5e-26 Score=156.88 Aligned_cols=94 Identities=71% Similarity=1.103 Sum_probs=86.1
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT 129 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~ 129 (144)
++|+|..++|.++|++++|+|||++++++|+++++.|+.|.||+|+|+|.+|++++.+...|+++++++|+||+||+++.
T Consensus 2 ~~v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~ 81 (95)
T 1frr_A 2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPE 81 (95)
T ss_dssp EEEEEEETTEEEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred eEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEEC
Confidence 67888436664589999999999999999999999999999999999999999998888889988888999999999999
Q ss_pred CCeEEEcCCccccc
Q 032269 130 SDVTIETHKEEELA 143 (144)
Q Consensus 130 ~dl~I~~~~~~~~~ 143 (144)
+|++|++++++++|
T Consensus 82 ~~~~v~~~~~~~~~ 95 (95)
T 1frr_A 82 SDLVIETHKEEELF 95 (95)
T ss_dssp SCEEEECCCTTTTC
T ss_pred CCEEEEEcchhhcC
Confidence 99999999988876
No 4
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.94 E-value=1.6e-26 Score=157.84 Aligned_cols=96 Identities=70% Similarity=1.231 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP 128 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~ 128 (144)
.++|+|..+++.+++++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+++
T Consensus 2 ~~~v~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~ 81 (97)
T 1a70_A 2 AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYP 81 (97)
T ss_dssp EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEE
T ss_pred eEEEEEEeCCceEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEE
Confidence 36888854666458999999999999999999999999999999999999999998888888998888899999999999
Q ss_pred CCCeEEEcCCcccccC
Q 032269 129 TSDVTIETHKEEELAG 144 (144)
Q Consensus 129 ~~dl~I~~~~~~~~~~ 144 (144)
.+|++|++++++++|.
T Consensus 82 ~~d~~v~~~~~~~~~~ 97 (97)
T 1a70_A 82 VSDVTIETHKKEELTA 97 (97)
T ss_dssp SSCEEEECCCGGGCCC
T ss_pred CCCEEEEeCchhhccC
Confidence 9999999999988874
No 5
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.94 E-value=2.6e-26 Score=157.04 Aligned_cols=95 Identities=71% Similarity=1.168 Sum_probs=86.6
Q ss_pred ceEEEEEcCCC--eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeec
Q 032269 49 TYKVKLITPGG--EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAA 126 (144)
Q Consensus 49 ~~~V~i~~~~g--~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~ 126 (144)
.++|+|..+++ .++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|++++.+...|+++++++|+||+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 81 (98)
T 1czp_A 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeC
Confidence 37888865553 4689999999999999999999999999999999999999999988888789988888999999999
Q ss_pred eECCCeEEEcCCccccc
Q 032269 127 YPTSDVTIETHKEEELA 143 (144)
Q Consensus 127 ~~~~dl~I~~~~~~~~~ 143 (144)
++.+|++|++++++++|
T Consensus 82 ~~~~d~~v~~~~~~~~~ 98 (98)
T 1czp_A 82 YPTSDVVIQTHKEEDLY 98 (98)
T ss_dssp EESSCEEEECCCTTTTC
T ss_pred EECCCEEEEeccccccC
Confidence 99999999999998886
No 6
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.93 E-value=2.3e-26 Score=157.41 Aligned_cols=95 Identities=49% Similarity=1.003 Sum_probs=86.1
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP 128 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~ 128 (144)
.++|+|..+++.+++++++|+|||++++++|++++++|+.|.||+|+|+|++|++++.+...|+++++++|+||+||+++
T Consensus 2 ~~~v~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~ 81 (98)
T 1iue_A 2 FYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYP 81 (98)
T ss_dssp EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred cEEEEEEeCCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEE
Confidence 46788854555458999999999999999999999999999999999999999998888888998888899999999999
Q ss_pred CCCeEEEcCCccccc
Q 032269 129 TSDVTIETHKEEELA 143 (144)
Q Consensus 129 ~~dl~I~~~~~~~~~ 143 (144)
.+|++|++++++++|
T Consensus 82 ~~d~~i~~~~~~~~~ 96 (98)
T 1iue_A 82 KSDCVIETHKEDELH 96 (98)
T ss_dssp SSCEEEECCCHHHHH
T ss_pred CCCeEEEeCChHhhc
Confidence 999999999887765
No 7
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.93 E-value=8.7e-26 Score=154.17 Aligned_cols=94 Identities=54% Similarity=1.002 Sum_probs=85.0
Q ss_pred ceEEEEEcCCC--eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeec
Q 032269 49 TYKVKLITPGG--EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAA 126 (144)
Q Consensus 49 ~~~V~i~~~~g--~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~ 126 (144)
.++|+|..+++ .++|++++|+|||++++++|+++|+.|+.|.||+|+|+|++|.+.+.+...|++++.++|+||+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~ 81 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeEC
Confidence 47888864453 4589999999999999999999999999999999999999999988888889988888999999999
Q ss_pred eECCCeEEEcCCcccc
Q 032269 127 YPTSDVTIETHKEEEL 142 (144)
Q Consensus 127 ~~~~dl~I~~~~~~~~ 142 (144)
++.+|++|++++++++
T Consensus 82 ~~~~d~~v~~~~~~~~ 97 (98)
T 1frd_A 82 YPRSNCTIKTHQEPYL 97 (98)
T ss_dssp EESSSEEEECCCGGGC
T ss_pred EECCCEEEEecchhhc
Confidence 9999999999988765
No 8
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.93 E-value=8.3e-26 Score=153.24 Aligned_cols=92 Identities=60% Similarity=0.992 Sum_probs=83.7
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT 129 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~ 129 (144)
++|+|..+++.++|++++|+|||++++++| .+++.|+.|.||+|+|+|++|.+.+.+...|++++.++|+||+||++|.
T Consensus 2 ~~V~~~~~~~~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~ 80 (93)
T 1wri_A 2 YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPE 80 (93)
T ss_dssp EEEEEEETTEEEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred EEEEEEECCCeEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEEC
Confidence 678885466545899999999999999999 9999999999999999999999998888889988888999999999999
Q ss_pred CCeEEEcCCcccc
Q 032269 130 SDVTIETHKEEEL 142 (144)
Q Consensus 130 ~dl~I~~~~~~~~ 142 (144)
+|++|++++++++
T Consensus 81 ~d~~v~~~~~~~~ 93 (93)
T 1wri_A 81 SDVVIETHKEDEL 93 (93)
T ss_dssp SCEEEECCCGGGC
T ss_pred CCEEEEecccccC
Confidence 9999999987764
No 9
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.91 E-value=3.2e-25 Score=159.01 Aligned_cols=111 Identities=27% Similarity=0.461 Sum_probs=89.1
Q ss_pred CCceeeeccCCcCCCCcccc-ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccC
Q 032269 27 PNMGQAIFGLKANRGGRVVA-MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105 (144)
Q Consensus 27 ~~i~~e~F~~~~~~~~~~~~-m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~ 105 (144)
..+|||.|+...-....-.+ ..+++|+| ..+|..++++++|+|||++++++|+++|++|+.|.||+|+++|++|.+.+
T Consensus 4 ~~~~~e~~~~~~~~~~~~~~f~~m~~i~i-~~~g~~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v~~ 82 (128)
T 1doi_A 4 EYLNYEVVDDNGWDMYDDDVFGEASDMDL-DDEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDM 82 (128)
T ss_dssp EEEEHHHHHHHTCCTTTSCHHHHHHHSCC-CTTTEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEE
T ss_pred eEEEEEEecccccccccccccccccEEEE-EeCCcEEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCcCc
Confidence 45899999766543322110 01355666 55674379999999999999999999999999999999999999999988
Q ss_pred CcCCCCCccc-cCCCeEEeeeceECCC-eEEEcCC
Q 032269 106 SEQSFLDDDQ-MGEGFVLTCAAYPTSD-VTIETHK 138 (144)
Q Consensus 106 ~e~~~L~~~~-~~~g~rLaCq~~~~~d-l~I~~~~ 138 (144)
.+...|++++ .++|+||+||++|.+| ++|+...
T Consensus 83 ~e~~~L~~~e~~~~g~rLaCq~~~~~d~i~i~~~~ 117 (128)
T 1doi_A 83 DMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNA 117 (128)
T ss_dssp CCCSSSCHHHHHTSCEEEGGGEEECSSEEEEEECG
T ss_pred hhhccCCHhHhccCCEEEEEEeEEcCCeEEEEecC
Confidence 8777898755 6899999999999999 8887544
No 10
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.90 E-value=1e-24 Score=148.95 Aligned_cols=91 Identities=29% Similarity=0.528 Sum_probs=79.4
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccC--CcCCCCCccccCCCeEEeee
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ--SEQSFLDDDQMGEGFVLTCA 125 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq 125 (144)
+++|+|..+++ .++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+++ .+...|+++++++|+||+||
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq 83 (98)
T 1jq4_A 4 VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCR 83 (98)
T ss_dssp EEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTT
T ss_pred cEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEee
Confidence 57888843222 3589999999999999999999999999999999999999999875 46667888888889999999
Q ss_pred ceECCCeEEEcCCc
Q 032269 126 AYPTSDVTIETHKE 139 (144)
Q Consensus 126 ~~~~~dl~I~~~~~ 139 (144)
+++.+|++|+++.+
T Consensus 84 ~~~~~d~~v~~~~~ 97 (98)
T 1jq4_A 84 TYPKTDLEIELPYT 97 (98)
T ss_dssp CCSSCCSEEECSCC
T ss_pred CEECCCEEEEecCC
Confidence 99999999998764
No 11
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.89 E-value=4.8e-24 Score=147.61 Aligned_cols=90 Identities=24% Similarity=0.434 Sum_probs=78.3
Q ss_pred EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccC------CcCCCCCc-cccCCCe
Q 032269 51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDD-DQMGEGF 120 (144)
Q Consensus 51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~~g~ 120 (144)
+|+|+.++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|+++. .+...|+. +++++|+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g~ 81 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHS 81 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTTE
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCCc
Confidence 688877777 4689999999999999999999 999999 999999999999997653 23445776 6788999
Q ss_pred EEeeeceECCC---eEEEcCCcc
Q 032269 121 VLTCAAYPTSD---VTIETHKEE 140 (144)
Q Consensus 121 rLaCq~~~~~d---l~I~~~~~~ 140 (144)
||+||+++.+| ++|++|+++
T Consensus 82 rLaCq~~~~~dl~gl~v~ip~~~ 104 (104)
T 3lxf_A 82 RLSCQITINDKLEGLEVEIAPED 104 (104)
T ss_dssp EEGGGCBCCGGGTTCEEEECCCC
T ss_pred EEEeeCEEccCCCCEEEEecCCC
Confidence 99999999999 999998763
No 12
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.89 E-value=1.1e-23 Score=150.61 Aligned_cols=94 Identities=17% Similarity=0.341 Sum_probs=80.6
Q ss_pred ccceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCccc------CCcCCCCC-cccc
Q 032269 47 MATYKVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVD------QSEQSFLD-DDQM 116 (144)
Q Consensus 47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~------~~e~~~L~-~~~~ 116 (144)
..|++|+|+.++| +++|++++|+|||++++++||+ +++.|+ .|.||+|+|+|++|+++ ..|...|+ .+++
T Consensus 19 ~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e~ 98 (126)
T 3hui_A 19 SHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDV 98 (126)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSSC
T ss_pred CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhhc
Confidence 3578999965777 3589999999999999999999 999998 99999999999999743 22445677 4678
Q ss_pred CCCeEEeeeceECCC---eEEEcCCcc
Q 032269 117 GEGFVLTCAAYPTSD---VTIETHKEE 140 (144)
Q Consensus 117 ~~g~rLaCq~~~~~d---l~I~~~~~~ 140 (144)
++||||+||+++.+| ++|++|+.+
T Consensus 99 ~~g~RLaCQ~~~~~dldgl~V~lp~~~ 125 (126)
T 3hui_A 99 RPNSRLSCQIKVSNELDGLIVTTPERQ 125 (126)
T ss_dssp CTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred cCCeEEeeeCEECcCCCcEEEEecCcC
Confidence 899999999999999 999999865
No 13
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.88 E-value=4.4e-23 Score=144.25 Aligned_cols=91 Identities=23% Similarity=0.383 Sum_probs=75.1
Q ss_pred eEEEEEcC-----CCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC-----cCCCCCcc-ccC
Q 032269 50 YKVKLITP-----GGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS-----EQSFLDDD-QMG 117 (144)
Q Consensus 50 ~~V~i~~~-----~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~-----e~~~L~~~-~~~ 117 (144)
++|+|+.. ++ ++|++++|+|||++++++|++|++.|+ .|.||+|+|+|++|..... +...|+.+ +++
T Consensus 2 ~~vt~~~~~g~~~~~-~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (113)
T 3ah7_A 2 PLVTFLPHEKFCPEG-LTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE 80 (113)
T ss_dssp CEEEECCBTTTBTTC-EEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCC
T ss_pred CEEEEEcCCCcCCCC-eEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccC
Confidence 57888543 34 489999999999999999999999998 7999999999999974431 23456654 678
Q ss_pred CCeEEeeeceEC-CCeEEEcCCccc
Q 032269 118 EGFVLTCAAYPT-SDVTIETHKEEE 141 (144)
Q Consensus 118 ~g~rLaCq~~~~-~dl~I~~~~~~~ 141 (144)
+|+||+||+++. +|++|+++.++.
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~~ 105 (113)
T 3ah7_A 81 AQSRLGCQVFVADEDLTIEIPKYSL 105 (113)
T ss_dssp TTEEEGGGCBCCSSCEEEECCSCCC
T ss_pred CCcEEeeeCEEeCCCEEEEECchhh
Confidence 899999999998 899999987543
No 14
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.88 E-value=1.6e-23 Score=145.75 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=76.8
Q ss_pred ceEEEEEcCCCe-EEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccC------CcCCCCCc-cccCCC
Q 032269 49 TYKVKLITPGGE-EEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDD-DQMGEG 119 (144)
Q Consensus 49 ~~~V~i~~~~g~-~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~~g 119 (144)
+++|+|+.++|. ++|++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|+++. .|...|+. .++++|
T Consensus 5 m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 84 (109)
T 2y5c_A 5 VVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQEN 84 (109)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCCTT
T ss_pred cEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCCCC
Confidence 578999666774 469999999999999999999999999 599999999999996443 13345653 567899
Q ss_pred eEEeeeceECCC---eEEEcCCcc
Q 032269 120 FVLTCAAYPTSD---VTIETHKEE 140 (144)
Q Consensus 120 ~rLaCq~~~~~d---l~I~~~~~~ 140 (144)
+||+||+++.+| ++|++++..
T Consensus 85 ~rLaCq~~~~~d~~~~~v~ip~~~ 108 (109)
T 2y5c_A 85 SRLGCQIVLTPELEGAEFTLPKIT 108 (109)
T ss_dssp EEEGGGCBCCGGGTTCEEECCSCC
T ss_pred cEeeEEeEEecCCCeEEEEecCCC
Confidence 999999999997 999998753
No 15
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.88 E-value=3.7e-23 Score=143.01 Aligned_cols=90 Identities=20% Similarity=0.381 Sum_probs=74.8
Q ss_pred EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCccc------CCcCCCCCccc-c-CCC
Q 032269 51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVD------QSEQSFLDDDQ-M-GEG 119 (144)
Q Consensus 51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~------~~e~~~L~~~~-~-~~g 119 (144)
+|+|+.++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|.++ ..+...|+..+ . ++|
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN 81 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 677855666 3589999999999999999999 999996 89999999999999433 23445677654 6 889
Q ss_pred eEEeeeceECC---CeEEEcCCcc
Q 032269 120 FVLTCAAYPTS---DVTIETHKEE 140 (144)
Q Consensus 120 ~rLaCq~~~~~---dl~I~~~~~~ 140 (144)
+||+||+++.+ |++|++++.+
T Consensus 82 ~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 82 SRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred cEeeeeeEeecCCCCEEEEecCcc
Confidence 99999999998 6899998754
No 16
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.87 E-value=4.3e-23 Score=142.67 Aligned_cols=90 Identities=26% Similarity=0.438 Sum_probs=75.2
Q ss_pred EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccC------CcCCCCCcc-ccC-CC
Q 032269 51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDDD-QMG-EG 119 (144)
Q Consensus 51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~~-~~~-~g 119 (144)
+|+|+.++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|+++. .+...|+.. +++ +|
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPAT 81 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCCC
Confidence 678855666 2589999999999999999999 999996 899999999999995432 244467765 677 89
Q ss_pred eEEeeeceECC---CeEEEcCCcc
Q 032269 120 FVLTCAAYPTS---DVTIETHKEE 140 (144)
Q Consensus 120 ~rLaCq~~~~~---dl~I~~~~~~ 140 (144)
+||+||+++.+ |++|+++.++
T Consensus 82 ~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 82 SRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred cEecccCEEccCCCCEEEEecCCC
Confidence 99999999999 5999998754
No 17
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.87 E-value=1.4e-23 Score=144.93 Aligned_cols=89 Identities=17% Similarity=0.416 Sum_probs=75.3
Q ss_pred EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCc------ccCCcCCCCC--ccccCCC
Q 032269 51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGT------VDQSEQSFLD--DDQMGEG 119 (144)
Q Consensus 51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~------~~~~e~~~L~--~~~~~~g 119 (144)
+|+|+.++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|+ +...+...|+ ..++++|
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAG 81 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 677854566 3589999999999999999999 999999 799999999999994 3334555676 5778899
Q ss_pred eEEeeeceECC---CeEEEcCCc
Q 032269 120 FVLTCAAYPTS---DVTIETHKE 139 (144)
Q Consensus 120 ~rLaCq~~~~~---dl~I~~~~~ 139 (144)
+||+||+++.+ |++|++++.
T Consensus 82 ~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 82 TRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp BSCGGGCCCCTTSTTEEEECCSC
T ss_pred cEeeeeCEecCCCCcEEEEecCC
Confidence 99999999999 799999864
No 18
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.87 E-value=4.1e-23 Score=143.34 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=74.4
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCC--CCCC-CcccccCEEEEeeCcccC------CcCCCCCc-cccC
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLP--YSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDD-DQMG 117 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~--~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~ 117 (144)
|++|+|+.++| .++|++++|+|||++++++||+|+ +.|+ .|.||+|+|+|.+|.++. .|...|+. .+++
T Consensus 6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 85 (108)
T 2bt6_A 6 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT 85 (108)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCcccCC
Confidence 57899964666 457999999999999999999999 9998 699999999999995442 23445664 6688
Q ss_pred CCeEEeeeceECC---CeEEEcC
Q 032269 118 EGFVLTCAAYPTS---DVTIETH 137 (144)
Q Consensus 118 ~g~rLaCq~~~~~---dl~I~~~ 137 (144)
+|+||+||+++.+ |++|++|
T Consensus 86 ~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 86 DRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp TTEEEGGGCBCCGGGTTEEEECC
T ss_pred CCcEeeEEEEecCCCCCEEEEcC
Confidence 9999999999998 5999875
No 19
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=3.6e-22 Score=137.36 Aligned_cols=89 Identities=29% Similarity=0.394 Sum_probs=74.7
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC------cCCCCCc-cccCCC
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS------EQSFLDD-DQMGEG 119 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~~-~~~~~g 119 (144)
+++|+|..++| .++|++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|++++. |...|+. .+.++|
T Consensus 3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~g 82 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEET 82 (103)
T ss_dssp CEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCTT
T ss_pred ceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCCC
Confidence 46889853566 3589999999999999999999999999 8999999999999976542 2235665 457889
Q ss_pred eEEeeeceECCC---eEEEcC
Q 032269 120 FVLTCAAYPTSD---VTIETH 137 (144)
Q Consensus 120 ~rLaCq~~~~~d---l~I~~~ 137 (144)
+||+||+++.+| ++|++|
T Consensus 83 ~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 83 SRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp EEEGGGCBCCGGGTTEEEECC
T ss_pred cEeeEeeEeCCCCCcEEEEcC
Confidence 999999999999 999875
No 20
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.85 E-value=1.2e-21 Score=136.61 Aligned_cols=91 Identities=25% Similarity=0.425 Sum_probs=73.5
Q ss_pred eEEEEEcC-----CCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCCc-----CCCCCcc-ccC
Q 032269 50 YKVKLITP-----GGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQSE-----QSFLDDD-QMG 117 (144)
Q Consensus 50 ~~V~i~~~-----~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e-----~~~L~~~-~~~ 117 (144)
++|+|+.+ ++ ++|++++|+|||++++++|+.+++.|+ .|.||+|+|+|.+|.+.+.. ...|+.. +..
T Consensus 2 ~~i~~~~~~g~~~~~-~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (111)
T 1i7h_A 2 PKIVILPHQDLCPDG-AVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLE 80 (111)
T ss_dssp CEEEECCBTTTBTTC-EEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCC
T ss_pred CEEEEEeCCCcCCCC-eEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccC
Confidence 47777543 34 489999999999999999999999995 99999999999999876542 2234332 466
Q ss_pred CCeEEeeeceEC-CCeEEEcCCccc
Q 032269 118 EGFVLTCAAYPT-SDVTIETHKEEE 141 (144)
Q Consensus 118 ~g~rLaCq~~~~-~dl~I~~~~~~~ 141 (144)
+++||+||+++. +|++|+++.++.
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~~ 105 (111)
T 1i7h_A 81 PESRLSCQARVTDEDLVVEIPRYTI 105 (111)
T ss_dssp TTEEETTTCBCCSSCEEEECCSCCC
T ss_pred CCcEEEEEEEEeCCCEEEEEChHHh
Confidence 899999999995 899999987543
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.85 E-value=1.6e-21 Score=157.35 Aligned_cols=93 Identities=28% Similarity=0.507 Sum_probs=81.0
Q ss_pred ccceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccC----CcCCCCCccccCCCeE
Q 032269 47 MATYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ----SEQSFLDDDQMGEGFV 121 (144)
Q Consensus 47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~----~e~~~L~~~~~~~g~r 121 (144)
|++++|+|...++ .+++++++|+|||++++++|+++++.|+.|.||+|+|+|++|++.. .+...|+++++++|+|
T Consensus 1 m~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~ 80 (338)
T 1krh_A 1 MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYV 80 (338)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEE
T ss_pred CCceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeE
Confidence 4578899953332 3589999999999999999999999999999999999999998875 3667889888999999
Q ss_pred EeeeceECCCeEEEcCCc
Q 032269 122 LTCAAYPTSDVTIETHKE 139 (144)
Q Consensus 122 LaCq~~~~~dl~I~~~~~ 139 (144)
|+||+++.+|++|+++.+
T Consensus 81 LaCq~~~~~~~~v~~~~~ 98 (338)
T 1krh_A 81 LACQCRPTSDAVFQIQAS 98 (338)
T ss_dssp ETTTCEESSSEEEEESSC
T ss_pred EEEeCEECCCeEEEEecc
Confidence 999999999999999775
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.85 E-value=1e-21 Score=171.24 Aligned_cols=94 Identities=32% Similarity=0.660 Sum_probs=85.9
Q ss_pred ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeee
Q 032269 47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCA 125 (144)
Q Consensus 47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq 125 (144)
|.|++|+| .++++ ++++++|+|||++++++|++++++|+ .|.||+|+++|++|++++.+...|+++++++|+||+||
T Consensus 1 M~m~~V~~-~~sg~-~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaCq 78 (631)
T 3zyy_X 1 MAEYKVLF-KPDQK-EVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQ 78 (631)
T ss_dssp --CEEEEE-ETTTE-EEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETTT
T ss_pred CCceEEEE-ecCCe-EEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEeee
Confidence 56899999 67775 89999999999999999999999999 99999999999999999888888998889999999999
Q ss_pred ceECCCeEEEcCCcccc
Q 032269 126 AYPTSDVTIETHKEEEL 142 (144)
Q Consensus 126 ~~~~~dl~I~~~~~~~~ 142 (144)
+++.+|++|++++++++
T Consensus 79 a~~~sDl~Ielp~~~~~ 95 (631)
T 3zyy_X 79 TYPESDLIIEIPFDSRL 95 (631)
T ss_dssp EEECSSEEEECCTTSSC
T ss_pred CEECCCEEEEecchhhh
Confidence 99999999999987653
No 23
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.82 E-value=1.3e-20 Score=127.54 Aligned_cols=81 Identities=30% Similarity=0.540 Sum_probs=66.9
Q ss_pred EEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccCC---cCCCCCccccCCCeEEeee
Q 032269 52 VKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQS---EQSFLDDDQMGEGFVLTCA 125 (144)
Q Consensus 52 V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~---e~~~L~~~~~~~g~rLaCq 125 (144)
|+| ..+| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|.+... +...|+ +.++++||+||
T Consensus 3 v~i-~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLaCq 79 (93)
T 1l5p_A 3 ITA-VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLACA 79 (93)
T ss_dssp EEE-EETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEGGG
T ss_pred EEE-EeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEeeE
Confidence 444 2345 3579999999999999999999 999999 9999999999999987632 344566 67889999999
Q ss_pred ceECCC---eEEE
Q 032269 126 AYPTSD---VTIE 135 (144)
Q Consensus 126 ~~~~~d---l~I~ 135 (144)
+++.+| ++|+
T Consensus 80 ~~~~~d~~g~~v~ 92 (93)
T 1l5p_A 80 ITLSGENDGAVFE 92 (93)
T ss_dssp CEECGGGTTCEEE
T ss_pred CEECCCCCceEEE
Confidence 999987 4554
No 24
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.80 E-value=1.4e-21 Score=139.18 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=20.2
Q ss_pred ccceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCC--CCCC-CcccccCEEEEeeCcccC------CcCCCCCc-cc
Q 032269 47 MATYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLP--YSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDD-DQ 115 (144)
Q Consensus 47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~--~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~ 115 (144)
+.+++|+|+.++| .++|++++|+|||++++++||+++ +.|+ .|.||+|+|+|.+|.... .|...|+. .+
T Consensus 3 ~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~~ 82 (123)
T 3n9z_C 3 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG 82 (123)
T ss_dssp ----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC---
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhccccc
Confidence 3568899976766 457999999999999999999999 9998 899999999999754321 23445653 46
Q ss_pred cCCCeEEeeeceECC---CeEEEcCCcc
Q 032269 116 MGEGFVLTCAAYPTS---DVTIETHKEE 140 (144)
Q Consensus 116 ~~~g~rLaCq~~~~~---dl~I~~~~~~ 140 (144)
+.+++||+||+++.+ |++|++|+..
T Consensus 83 ~~~~~RLaCQ~~v~~~ld~l~V~ip~~~ 110 (123)
T 3n9z_C 83 LTDRSRLGCQICLTKSMDNMTVRVPETV 110 (123)
T ss_dssp -----CBCC-------------------
T ss_pred ccCCeEEeeEeEEccCCCCEEEEECccc
Confidence 778999999999998 7999998753
No 25
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=99.06 E-value=2.1e-10 Score=102.22 Aligned_cols=86 Identities=21% Similarity=0.448 Sum_probs=62.0
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCC------CCcccccCEEEEeeCcccCCcCCCCCcc-----ccCC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSC------RAGACSSCTGKVVSGTVDQSEQSFLDDD-----QMGE 118 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C------~~G~CgtC~v~v~~G~~~~~e~~~L~~~-----~~~~ 118 (144)
++|+| +|+ ++++++|+|||+|++++|+.||+.| ..|.|+.|.|+|..+..+......++++ +...
T Consensus 2 v~i~i---dg~-~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~ 77 (783)
T 3i9v_3 2 VRVKV---NDR-IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQP 77 (783)
T ss_dssp EEEEC---SSC-EEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCS
T ss_pred eEEEE---CCE-EEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCC
Confidence 56676 575 7999999999999999999999999 5899999999995322111111111111 1134
Q ss_pred CeEEeeeceECCCeEEEcCCc
Q 032269 119 GFVLTCAAYPTSDVTIETHKE 139 (144)
Q Consensus 119 g~rLaCq~~~~~dl~I~~~~~ 139 (144)
+.++||++.+..+|+|++.++
T Consensus 78 ~~~~aC~t~v~~gm~v~t~~~ 98 (783)
T 3i9v_3 78 KLAASCVTAVADGMVVDTLSD 98 (783)
T ss_dssp SCEETTTCBCCSSEEEESSSH
T ss_pred CcccccCCCCCCCCEEEECCH
Confidence 679999999999999998764
No 26
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.91 E-value=2.7e-09 Score=79.13 Aligned_cols=67 Identities=25% Similarity=0.472 Sum_probs=52.1
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CCC-CCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeee
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAAEEA-GLD-LPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCA 125 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi~-i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq 125 (144)
+++++| +| .+++++++|+|||++++++ |+. ++++|+.|.||+|.|.| +|. .++||.
T Consensus 11 ~i~~~i---ng~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~-----------------~v~sC~ 69 (168)
T 1t3q_A 11 RISATI---NGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA-----------------PMRSCL 69 (168)
T ss_dssp EEEEEE---TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE-----------------EEEGGG
T ss_pred eEEEEE---CCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCC-----------------Eeechh
Confidence 356666 34 3567789999999999996 997 89999999999999999 542 377888
Q ss_pred ceECC--CeEEEc
Q 032269 126 AYPTS--DVTIET 136 (144)
Q Consensus 126 ~~~~~--dl~I~~ 136 (144)
+.+.. +..|.+
T Consensus 70 ~~~~~~~G~~v~T 82 (168)
T 1t3q_A 70 TLAVQAEGCSIET 82 (168)
T ss_dssp SBGGGGTTCEEEC
T ss_pred hHHHHhCCCeEEE
Confidence 87765 555544
No 27
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.81 E-value=7.6e-09 Score=89.45 Aligned_cols=69 Identities=26% Similarity=0.509 Sum_probs=58.5
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEE
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVL 122 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL 122 (144)
++|+| +|+ .+++++|+|||++++++|+.+|+.|+ .|.||.|.|+| +|. . .++
T Consensus 2 v~~~i---ng~-~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~---------------~-~~~ 60 (574)
T 3c8y_A 2 KTIII---NGV-QFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT---------------G-LVT 60 (574)
T ss_dssp EEEEE---TTE-EEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT---------------E-EEE
T ss_pred eEEEE---CCE-EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC---------------c-ccc
Confidence 45666 675 79999999999999999999999998 88999999998 221 2 689
Q ss_pred eeeceECCCeEEEcCCc
Q 032269 123 TCAAYPTSDVTIETHKE 139 (144)
Q Consensus 123 aCq~~~~~dl~I~~~~~ 139 (144)
||++.+.++++|.+.++
T Consensus 61 aC~t~v~~gm~V~T~~~ 77 (574)
T 3c8y_A 61 ACDTLIEDGMIINTNSD 77 (574)
T ss_dssp GGGCBCCTTCEEESSCH
T ss_pred cCCCCcccceeEEecch
Confidence 99999999999987653
No 28
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.73 E-value=1.6e-08 Score=78.22 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=48.4
Q ss_pred EEEEcCCchhHHHHHHHcCC------CCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC---
Q 032269 61 EEINCPDDSFILDAAEEAGL------DLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD--- 131 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi------~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d--- 131 (144)
+++++++|+|||++|++.|+ ...++|+.|.||+|.|+| +|. .+|||++.+...
T Consensus 26 ~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~-----------------~~~aC~~~~~~~~~~ 87 (243)
T 1kf6_B 26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTDG 87 (243)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTTC
T ss_pred EEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE-----------------EEeeeeeEHhhCCCc
Confidence 57888999999999999983 467789999999999996 553 388999998877
Q ss_pred eEEEc
Q 032269 132 VTIET 136 (144)
Q Consensus 132 l~I~~ 136 (144)
++|+-
T Consensus 88 ~~i~~ 92 (243)
T 1kf6_B 88 MKVEA 92 (243)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88864
No 29
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.53 E-value=8e-08 Score=74.23 Aligned_cols=58 Identities=24% Similarity=0.466 Sum_probs=45.3
Q ss_pred EEEEcCCchhHHHHHHHcC------CCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECC---C
Q 032269 61 EEINCPDDSFILDAAEEAG------LDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTS---D 131 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~G------i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~---d 131 (144)
+++++++|+|||++|++.| +...++|+.|.||+|.|+| +|.. +|||++.+.. +
T Consensus 26 ~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~-----------------~~aC~~~~~~~~g~ 87 (241)
T 2bs2_B 26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP-----------------SLACRTLTKDFEDG 87 (241)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE-----------------EEGGGCBGGGCTTS
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe-----------------ecchhCcHhHcCCC
Confidence 4688899999999999864 4566799999999999999 6643 4788887754 3
Q ss_pred -eEEEc
Q 032269 132 -VTIET 136 (144)
Q Consensus 132 -l~I~~ 136 (144)
++|+.
T Consensus 88 ~~~ie~ 93 (241)
T 2bs2_B 88 VITLLP 93 (241)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 55553
No 30
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=98.51 E-value=3.1e-07 Score=67.85 Aligned_cols=46 Identities=20% Similarity=0.473 Sum_probs=37.5
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v 98 (144)
++++| || .+++++++++|||+++++. |+ ..+++|+.|.||.|.|.|
T Consensus 6 i~~~v---NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v 54 (163)
T 1ffv_A 6 ITVNV---NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI 54 (163)
T ss_dssp EEEEE---TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred EEEEE---CCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE
Confidence 44555 45 4567889999999999984 65 478999999999999998
No 31
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.50 E-value=2.6e-07 Score=68.05 Aligned_cols=65 Identities=29% Similarity=0.561 Sum_probs=49.2
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeec
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAA 126 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~ 126 (144)
++++| || .+++++++++|||+++++. |+ ..+++|+.|.||.|.|.| +|. .++||++
T Consensus 5 i~~~v---NG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~sC~~ 63 (161)
T 1rm6_C 5 LRLTL---NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR-----------------PRLACST 63 (161)
T ss_dssp EEEEE---TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred EEEEE---CCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc-----------------EEechHH
Confidence 45555 45 4556778999999999986 76 588999999999999998 442 4788888
Q ss_pred eECC--CeEEE
Q 032269 127 YPTS--DVTIE 135 (144)
Q Consensus 127 ~~~~--dl~I~ 135 (144)
.+.. +..|.
T Consensus 64 ~~~~~~G~~v~ 74 (161)
T 1rm6_C 64 LAHQVAGKKVE 74 (161)
T ss_dssp BGGGGTTSEEE
T ss_pred HHHHhCCceEE
Confidence 7754 54444
No 32
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.44 E-value=3.7e-07 Score=67.25 Aligned_cols=47 Identities=28% Similarity=0.524 Sum_probs=38.5
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v 98 (144)
++++| ++..+++++++++|||+++++. |+ ..+++|+.|.||.|.|.|
T Consensus 6 i~~~v--NG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v 54 (160)
T 3hrd_D 6 INLNL--NGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF 54 (160)
T ss_dssp EEEEE--TTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE
T ss_pred EEEEE--CCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE
Confidence 44444 3334578899999999999986 87 589999999999999998
No 33
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=98.38 E-value=6.9e-07 Score=66.13 Aligned_cols=46 Identities=17% Similarity=0.419 Sum_probs=37.4
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v 98 (144)
++++| || .+++++++++|||+++++. |+ ..+++|+.|.||.|.|.|
T Consensus 6 i~~~v---NG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v 54 (166)
T 1n62_A 6 IELTI---NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL 54 (166)
T ss_dssp EEEEE---TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred EEEEE---CCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE
Confidence 44555 45 4567889999999999984 66 468999999999999998
No 34
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.34 E-value=4.3e-07 Score=69.87 Aligned_cols=52 Identities=27% Similarity=0.440 Sum_probs=42.1
Q ss_pred EEEEcCC--chhHHHHHHHcC-----CCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECC
Q 032269 61 EEINCPD--DSFILDAAEEAG-----LDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTS 130 (144)
Q Consensus 61 ~~i~v~~--g~tLL~a~~~~G-----i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~ 130 (144)
+++++++ |+|||++|++.+ +...++|+.|.||+|.|+| +|. .+|||++.+..
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~ 81 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK-----------------NGLACITPISA 81 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE-----------------EEEGGGCBGGG
T ss_pred EEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE-----------------EEcccccchhh
Confidence 4688888 999999999987 5677899999999999998 443 25677776654
No 35
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=98.20 E-value=1.6e-06 Score=67.56 Aligned_cols=58 Identities=28% Similarity=0.501 Sum_probs=44.9
Q ss_pred EEEEcCC-chhHHHHHHHcC------CCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECC---
Q 032269 61 EEINCPD-DSFILDAAEEAG------LDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTS--- 130 (144)
Q Consensus 61 ~~i~v~~-g~tLL~a~~~~G------i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~--- 130 (144)
+++++++ |+|||++|++.+ +...++|+.|.||+|.|+| +|. .+|||++.+..
T Consensus 33 ~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~~~g 94 (252)
T 2h88_B 33 YEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDPDLS 94 (252)
T ss_dssp EEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCCCTT
T ss_pred EEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhHcCC
Confidence 4677778 999999999986 2356689999999999996 443 47888888765
Q ss_pred -CeEEEc
Q 032269 131 -DVTIET 136 (144)
Q Consensus 131 -dl~I~~ 136 (144)
.++|+-
T Consensus 95 ~~~~iep 101 (252)
T 2h88_B 95 KTTKIYP 101 (252)
T ss_dssp SCEEEEC
T ss_pred CceEEec
Confidence 266663
No 36
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=97.64 E-value=4e-05 Score=60.96 Aligned_cols=41 Identities=27% Similarity=0.569 Sum_probs=32.5
Q ss_pred EEEEcCC-chhHHHHHHHcCC------CCCCCCCCcccccCEEEEeeCc
Q 032269 61 EEINCPD-DSFILDAAEEAGL------DLPYSCRAGACSSCTGKVVSGT 102 (144)
Q Consensus 61 ~~i~v~~-g~tLL~a~~~~Gi------~i~~~C~~G~CgtC~v~v~~G~ 102 (144)
+++++++ |+|||++|++.+. ....+|+.|.||+|.|.| .|.
T Consensus 57 ~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~ 104 (282)
T 3vr8_B 57 FDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGE 104 (282)
T ss_pred EEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCE
Confidence 4577777 9999999998654 345689999999999987 443
No 37
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=97.42 E-value=0.00015 Score=53.38 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=38.7
Q ss_pred ceEEEEEcCCCeE--EEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269 49 TYKVKLITPGGEE--EINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 49 ~~~V~i~~~~g~~--~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~ 99 (144)
+++++| ||+. .++++++++||+.+++. |+ ....+|+.|.||.|-|.|-
T Consensus 4 ~i~~~v---NG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd 55 (164)
T 3nvw_A 4 ELVFFV---NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 55 (164)
T ss_dssp CEEEEE---TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred eEEEEE---CCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence 356666 4642 35689999999999985 76 6899999999999999985
No 38
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.33 E-value=0.00031 Score=59.33 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=37.7
Q ss_pred eEEEEEcCCC-eEEE-EcCCchhHHHHHHHcCC-CCCCCCCCcccccCEEEEe
Q 032269 50 YKVKLITPGG-EEEI-NCPDDSFILDAAEEAGL-DLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i-~v~~g~tLL~a~~~~Gi-~i~~~C~~G~CgtC~v~v~ 99 (144)
+++++ || .+++ +++++++||+++++.|+ ....+|+.|.||.|-|.|-
T Consensus 3 ~~~~v---Ng~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v~ 52 (462)
T 2w3s_A 3 IAFLL---NGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMIR 52 (462)
T ss_dssp EEEEE---TTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEEE
T ss_pred EEEEE---CCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEEE
Confidence 44555 45 4556 67899999999996677 4899999999999999993
No 39
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=97.32 E-value=0.00034 Score=63.42 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=38.3
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v 98 (144)
+++++ ++..++++++++++||++|++. |+ ....+|+.|.||.|-|.|
T Consensus 4 ~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v 52 (907)
T 1vlb_A 4 KVITV--NGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL 52 (907)
T ss_dssp EEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred EEEEE--CCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE
Confidence 44555 3335678889999999999984 66 689999999999999998
No 40
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=97.17 E-value=0.00042 Score=62.83 Aligned_cols=47 Identities=17% Similarity=0.421 Sum_probs=38.5
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV 98 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v 98 (144)
+++++ ++..++++++++++||++|++. |+ ....+|+.|.||.|-|.|
T Consensus 4 ~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v 52 (907)
T 1dgj_A 4 KTLIV--NGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL 52 (907)
T ss_dssp EECEE--TTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred EEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE
Confidence 44555 3334578999999999999984 66 689999999999999988
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.93 E-value=0.0011 Score=55.42 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC----CCCCC-Ccc--cccCEEEE
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDL----PYSCR-AGA--CSSCTGKV 98 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i----~~~C~-~G~--CgtC~v~v 98 (144)
+++++| ||+ .+++.+|+||++|++++|+++ +.. + .|. |+.|.|+|
T Consensus 15 ~v~~~~---dg~-~~~~~~g~ti~~a~~~~g~~~~~~~~~~-~p~g~~~~~~c~v~v 66 (493)
T 1y56_A 15 KVTIYF---EGK-ELEAYEGEKLPVALLANEIYWLTTSNEG-RKRGAFTFGPVPMTV 66 (493)
T ss_dssp EEEEEE---TTE-EEEEETTCBHHHHHHHTTCCCCEECTTS-CEECSSSSSCCEEBS
T ss_pred eEEEEE---CCE-EEEecCCCHHHHHHHHCCCceecCCCCC-CCCccccceEEEEEE
Confidence 466666 675 799999999999999999965 222 3 455 78899976
No 42
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=95.64 E-value=0.022 Score=51.71 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=41.8
Q ss_pred ccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCC-----------CCCcccccCEEEEe
Q 032269 43 RVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYS-----------CRAGACSSCTGKVV 99 (144)
Q Consensus 43 ~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~-----------C~~G~CgtC~v~v~ 99 (144)
++..+.+++++| +|+ .+++.+|+||+.|++.+|+.+... |..|.|..|.+.+.
T Consensus 16 ~~~~~~~~~~~~---dG~-~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~ 79 (965)
T 2gag_A 16 RINREEALSLTV---DGA-KLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVS 79 (965)
T ss_dssp SSEEEEEEEEEE---TTE-EEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEEC
T ss_pred ccCCCCeEEEEE---CCE-EEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEc
Confidence 444455667777 675 799999999999999999986443 45688999999996
No 43
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=95.57 E-value=0.013 Score=55.11 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=37.1
Q ss_pred eEEEEEcCCCe-EEE-EcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269 50 YKVKLITPGGE-EEI-NCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 50 ~~V~i~~~~g~-~~i-~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~ 99 (144)
+++++ ||+ +++ .+++++|||+.+++. |+ ....+|+.|.||.|-|.|-
T Consensus 6 i~~~v---Ng~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~ 56 (1332)
T 3unc_A 6 LVFFV---NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 56 (1332)
T ss_dssp EEEEE---TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred EEEEE---CCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence 44555 454 333 589999999999984 76 4889999999999999984
No 44
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=92.76 E-value=0.13 Score=48.47 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=30.6
Q ss_pred cCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269 65 CPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 65 v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~ 99 (144)
+++..|||+.++.+ ++ .-...|+.|-||.|-|-|-
T Consensus 24 ~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~ 60 (1335)
T 3zyv_A 24 ADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS 60 (1335)
T ss_dssp CCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred CCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence 67999999999984 66 4788999999999999884
No 45
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=91.41 E-value=0.026 Score=43.06 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=28.7
Q ss_pred ccccccchHHHhcCCc-ccccCCCCCceeeeccCCc
Q 032269 4 LSSAMVSTSFIRSKPT-ATSLKAMPNMGQAIFGLKA 38 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~i~~e~F~~~~ 38 (144)
+|||..|+..+++.+. ..+++. .+||+|.|....
T Consensus 196 ~CGP~~m~~av~~~l~~~~G~~~-~~i~~e~fw~~g 230 (252)
T 2gpj_A 196 IACEFNSMRALRRHFKQAHALPK-SHFYTSSYWKIG 230 (252)
T ss_dssp EEEEHHHHHHHHHHHHHHCCCCG-GGEEEEEEECTT
T ss_pred EEcCHHHHHHHHHHHHHhcCCCH-HHeEEEEEcCCC
Confidence 7999999999999887 666666 999999997544
No 46
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=72.61 E-value=2.2 Score=32.14 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=20.7
Q ss_pred hHHHHHHHcCCCC------CCCCCCcccccCEEEEe
Q 032269 70 FILDAAEEAGLDL------PYSCRAGACSSCTGKVV 99 (144)
Q Consensus 70 tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v~ 99 (144)
.+.+ +.+.|++. ...|+.|.||.|.+...
T Consensus 205 ~v~~-l~~~gv~~~vs~e~~m~CG~G~C~~C~~~~~ 239 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISMESRMACGIGACYACVEHDK 239 (262)
T ss_dssp HHHH-HTTTCSSEEEECCCCCSSSSSSSCTTEEEET
T ss_pred HHHH-HHhCCCCEEEEecccccCcccccccCCcccc
Confidence 3444 55567652 35799999999999863
No 47
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=72.43 E-value=5.6 Score=26.54 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=24.4
Q ss_pred ccceEEEEEcCCCe---EEEEcCCchhHHHHHHHcC
Q 032269 47 MATYKVKLITPGGE---EEINCPDDSFILDAAEEAG 79 (144)
Q Consensus 47 m~~~~V~i~~~~g~---~~i~v~~g~tLL~a~~~~G 79 (144)
++.++|+|...++. +.+. +.+++|+++|.++.
T Consensus 6 ~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 6 EKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp CEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred eeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence 45688888766552 3466 88999999999987
No 48
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=71.19 E-value=6.2 Score=24.52 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=25.1
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLP 83 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~ 83 (144)
++|++ ......++++++|.|+.+.+.+.|++..
T Consensus 3 v~Vkl-~g~~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 3 VTVEV-VGEETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEEC-SSSSEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred EEEEE-eCccceeEEcCCCCcHHHHHHHcCCCcc
Confidence 45666 2222346899999999999999999875
No 49
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=69.50 E-value=6.1 Score=26.20 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=31.0
Q ss_pred ccceEEEEEcCCC-eEEEEcCCchhHHHHHHHc----CCCCCCCCCCcccccCEEEEe
Q 032269 47 MATYKVKLITPGG-EEEINCPDDSFILDAAEEA----GLDLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~----Gi~i~~~C~~G~CgtC~v~v~ 99 (144)
|..-.|.+..|++ ...++|.+|.||-+|+.++ |+ .+-.|.|...
T Consensus 11 ~~~~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L---------~pe~C~Vy~~ 59 (96)
T 3ny5_A 11 MQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL---------IPECCAVYRI 59 (96)
T ss_dssp CSSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC---------CGGGEEEEEC
T ss_pred hhhCEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCC---------ChHHeEEEEc
Confidence 5555566656777 5579999999999988764 33 5566777654
No 50
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=68.73 E-value=6.5 Score=25.02 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=27.2
Q ss_pred EEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEe
Q 032269 52 VKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 52 V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~ 99 (144)
|.+..|++ ...++|.+|.||-+|+.++ +.. |+=.+-.|.|...
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~Ka-Lk~----R~L~pe~C~V~~~ 47 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKA-LKV----RGLQPECCAVFRL 47 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHH-HHT----TTCCGGGEEEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHH-HHH----cCCCHHHeEEEEe
Confidence 34444666 4579999999999988764 000 1115566777655
No 51
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=63.67 E-value=7.1 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEEEcCCC-eEEEEcCCchhHHHHHHHc
Q 032269 51 KVKLITPGG-EEEINCPDDSFILDAAEEA 78 (144)
Q Consensus 51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~ 78 (144)
.|.++.|++ ...++|.+|+||-+|+.++
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~Ka 37 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKA 37 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHH
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHH
Confidence 455555776 5579999999999988754
No 52
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=63.19 E-value=7.6 Score=24.46 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=24.1
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
.|.+..|+|. .++.+.|.|.+|.|.+-+-.+
T Consensus 7 ~i~v~tP~G~-~~~lp~GaT~~D~A~~Ih~~l 37 (78)
T 3hvz_A 7 EVFVFTPKGD-VISLPIGSTVIDFAYAIHSAV 37 (78)
T ss_dssp EEEEECTTSC-EEEEETTCBHHHHHHHHCHHH
T ss_pred eEEEECCCCC-EEEecCCCCHHHHHHHhhhhh
Confidence 4566578896 699999999999998754444
No 53
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=60.71 E-value=11 Score=24.94 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=27.9
Q ss_pred EEEEEcCCC-eEEEEcCCchhHHHHHHHc----CCCCCCCCCCcccccCEEEEe
Q 032269 51 KVKLITPGG-EEEINCPDDSFILDAAEEA----GLDLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~----Gi~i~~~C~~G~CgtC~v~v~ 99 (144)
.|.+..|++ ...++|.+|.||-+|+.++ |+ .+-.|.|...
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L---------~pe~C~Vy~~ 63 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL---------IPECCAVYRI 63 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTC---------CGGGEEEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHcEEEEc
Confidence 455545776 5579999999999988654 44 4566777644
No 54
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=59.49 E-value=9.7 Score=24.89 Aligned_cols=31 Identities=16% Similarity=0.496 Sum_probs=23.1
Q ss_pred EEEEEcCCC-eEEEEcCCchhHHHHHHH----cCCC
Q 032269 51 KVKLITPGG-EEEINCPDDSFILDAAEE----AGLD 81 (144)
Q Consensus 51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~----~Gi~ 81 (144)
.|+|..+++ +..+.+.++.+|.|++++ .|++
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 455557777 667999999999987765 4664
No 55
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=57.46 E-value=1.6 Score=38.16 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=26.9
Q ss_pred ccccccchHHHhcCCccc-----cc------------CCCCCceeeeccCCcC
Q 032269 4 LSSAMVSTSFIRSKPTAT-----SL------------KAMPNMGQAIFGLKAN 39 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-----~~------------~~~~~i~~e~F~~~~~ 39 (144)
+|||..|...+.+.+... ++ ....++|+|.|+....
T Consensus 607 vCGp~~M~~~V~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf~~~~~ 659 (688)
T 1tll_A 607 VCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIFGVTLR 659 (688)
T ss_dssp EEEEHHHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEEESCSS
T ss_pred EeCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEecCCccc
Confidence 799999999888766543 22 1347899999987653
No 56
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=56.97 E-value=10 Score=22.57 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=21.9
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
++|++ ++|+ .++++.|.|+++.+.+.+..+
T Consensus 3 i~i~~--p~g~-~~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 3 VMVFT--PKGE-IKRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp EEEEC--TTCC-EEEECTTCBHHHHHHHHCSHH
T ss_pred EEEEc--CCCC-EEEcCCCCcHHHHHHHHhhcc
Confidence 34444 5675 688999999999998765443
No 57
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=56.79 E-value=2.4 Score=31.92 Aligned_cols=29 Identities=3% Similarity=-0.207 Sum_probs=22.9
Q ss_pred ccccccchHHHhcCCcccccCCCCCceeeecc
Q 032269 4 LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFG 35 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~F~ 35 (144)
+|||..|+..+++ +...+.+ .+++.|.|=
T Consensus 196 vCGp~~m~~~v~~-l~~~gv~--~~vs~e~~m 224 (262)
T 1ep3_B 196 TCGAPAMLKAVAK-KYDQLER--LYISMESRM 224 (262)
T ss_dssp EESCHHHHHHHHH-HTTTCSS--EEEECCCCC
T ss_pred EECCHHHHHHHHH-HHhCCCC--EEEEecccc
Confidence 7999999999999 7664444 678888663
No 58
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=55.34 E-value=13 Score=23.15 Aligned_cols=27 Identities=4% Similarity=0.122 Sum_probs=22.8
Q ss_pred EEEEEcCCCeEEEEcC--CchhHHHHHHHcCCC
Q 032269 51 KVKLITPGGEEEINCP--DDSFILDAAEEAGLD 81 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~--~g~tLL~a~~~~Gi~ 81 (144)
+|++ +|+ .++++ ++.||.+.+.+.|++
T Consensus 2 ~I~v---NGe-~~e~~~~~~~Tl~~LL~~l~~~ 30 (78)
T 2k5p_A 2 NLTV---NGK-PSTVDGAESLNVTELLSALKVA 30 (78)
T ss_dssp EEEE---TTE-EEECSSCSCEEHHHHHHHHTCS
T ss_pred EEEE---CCE-EEEcCCCCCCcHHHHHHHcCCC
Confidence 5777 565 68888 899999999999987
No 59
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=55.31 E-value=15 Score=24.75 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=28.6
Q ss_pred EEEEEcCCC-eEEEEcCCchhHHHHHHHc----CCCCCCCCCCcccccCEEEEe
Q 032269 51 KVKLITPGG-EEEINCPDDSFILDAAEEA----GLDLPYSCRAGACSSCTGKVV 99 (144)
Q Consensus 51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~----Gi~i~~~C~~G~CgtC~v~v~ 99 (144)
.|.+..|++ ...++|.+|.||-||+.++ |+ .+-.|.|...
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L---------~pe~C~Vy~~ 64 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL---------QPECCAVFRL 64 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTC---------CTTTEEEEEC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHceeEEc
Confidence 455556776 5679999999999988754 54 3566777655
No 60
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=52.58 E-value=12 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=22.6
Q ss_pred eEEEEEcCCCeEEEEcCCc-hhHHHHHHHcCCC
Q 032269 50 YKVKLITPGGEEEINCPDD-SFILDAAEEAGLD 81 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g-~tLL~a~~~~Gi~ 81 (144)
.+|++ +|+ .++++++ .||.+.+...+++
T Consensus 21 M~I~v---NGe-~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 21 HMLQL---NGK-DVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp -CEEE---TTE-EECCSSSCCBHHHHHHHTTCT
T ss_pred eEEEE---CCE-EEECCCCCCcHHHHHHHhCCC
Confidence 47888 565 7899998 9999999998765
No 61
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=50.72 E-value=35 Score=20.43 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=23.9
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCC
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLD 81 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~ 81 (144)
.+|++....+.++++++++.|+.+.+...+++
T Consensus 5 m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l~~~ 36 (70)
T 1ryj_A 5 MKFTVITDDGKKILESGAPRRIKDVLGELEIP 36 (70)
T ss_dssp EEEEEEETTEEEEEEESSCCBHHHHHHHTTCC
T ss_pred EEEEEeCccCceeEECCCCCcHHHHHHHhCCC
Confidence 37778433334468899999999999998865
No 62
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.18 E-value=27 Score=22.96 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=25.7
Q ss_pred ccceEEEEEcCCC-eEEEEcCCchhHHHHH----HHcCCCCC
Q 032269 47 MATYKVKLITPGG-EEEINCPDDSFILDAA----EEAGLDLP 83 (144)
Q Consensus 47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~----~~~Gi~i~ 83 (144)
+.+.+|+|+...| ...+++++.+||.+.= .+.|++..
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 4567888876655 5678999999987643 34576643
No 63
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=49.86 E-value=6.8 Score=25.32 Aligned_cols=25 Identities=32% Similarity=0.712 Sum_probs=19.3
Q ss_pred hHHHHHHHcCCCC-----CCCCCCcccccC
Q 032269 70 FILDAAEEAGLDL-----PYSCRAGACSSC 94 (144)
Q Consensus 70 tLL~a~~~~Gi~i-----~~~C~~G~CgtC 94 (144)
..|+.+.+.|.-. +.+|..|.|++|
T Consensus 35 rDL~~Le~~G~l~R~~~~~~~C~sgsC~sC 64 (87)
T 2k02_A 35 AMLERMEAMGKVVRISETSEGCLSGSCKSC 64 (87)
T ss_dssp HHHHHHHTTCCSEEEEEECCSSCSSSSSSC
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCCCCCC
Confidence 5678888888743 468988889988
No 64
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=48.32 E-value=23 Score=25.69 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=25.3
Q ss_pred cceEEEEEcCCC-eEEEEcCCchhHHHHHHHc
Q 032269 48 ATYKVKLITPGG-EEEINCPDDSFILDAAEEA 78 (144)
Q Consensus 48 ~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~ 78 (144)
.|..|.|..+-| +.+++++.++.||+.++.-
T Consensus 6 tml~i~f~t~LG~~V~vdve~~~~~l~v~R~y 37 (184)
T 3kdv_A 6 TMLHIEFITDLGAKVTVDVESADKLLDVQRQY 37 (184)
T ss_dssp CCEEEEEECTTCCEEEEEESSGGGHHHHHHHH
T ss_pred ceEEEEEecCCCceEEEecCCHHHHHHHHHHh
Confidence 357888888878 5578889999999999874
No 65
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=46.89 E-value=21 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=24.5
Q ss_pred cceEEEEEcCCC-eEEEEcCCchhHHHHH----HHcCCCC
Q 032269 48 ATYKVKLITPGG-EEEINCPDDSFILDAA----EEAGLDL 82 (144)
Q Consensus 48 ~~~~V~i~~~~g-~~~i~v~~g~tLL~a~----~~~Gi~i 82 (144)
++++|.++.+.| +..+.+++.+||.+.= .+.|++.
T Consensus 20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 457888876667 4679999999998642 3445544
No 66
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=46.77 E-value=11 Score=23.71 Aligned_cols=26 Identities=35% Similarity=0.730 Sum_probs=19.4
Q ss_pred hHHHHHHHcCCC-----CCCCCCCcccccCE
Q 032269 70 FILDAAEEAGLD-----LPYSCRAGACSSCT 95 (144)
Q Consensus 70 tLL~a~~~~Gi~-----i~~~C~~G~CgtC~ 95 (144)
.-|+.+.+.|.- ....|..|.|+.|.
T Consensus 35 rdL~~Le~~G~l~R~~~~GgaC~~g~C~~C~ 65 (78)
T 1xn7_A 35 AMLQQLESMGKAVRIQEEPDGCLSGSCKSCP 65 (78)
T ss_dssp HHHHHHHHHTSEEEECCCCCCCCCSSCCCCC
T ss_pred HHHHHHHHCCCEEEecCcCCCCCCCCCCCCC
Confidence 457788888874 34678878899994
No 67
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=44.89 E-value=24 Score=21.65 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=21.8
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
+|++ +|+ .+++ ++.||.+.+.+.|++.
T Consensus 2 ~I~v---NG~-~~e~-~~~Tl~~LL~~l~~~~ 28 (73)
T 2kl0_A 2 LVTI---NGE-QREV-QSASVAALMTELDCTG 28 (73)
T ss_dssp CEEE---TTE-EECC-CCSBHHHHHHHTTCCS
T ss_pred EEEE---CCE-EEEc-CCCcHHHHHHHcCCCC
Confidence 4677 464 6888 8899999999998873
No 68
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=43.70 E-value=21 Score=21.09 Aligned_cols=27 Identities=7% Similarity=0.289 Sum_probs=21.9
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHcCCC
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEAGLD 81 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~ 81 (144)
+|++ +|+ .++++++.|+.+.+...++.
T Consensus 2 ~i~v---Ng~-~~~~~~~~tv~~ll~~l~~~ 28 (66)
T 1f0z_A 2 QILF---NDQ-AMQCAAGQTVHELLEQLDQR 28 (66)
T ss_dssp CEEE---SSC-EECCCTTCCHHHHHHHHTCC
T ss_pred EEEE---CCE-EEEcCCCCcHHHHHHHcCCC
Confidence 4677 465 68899999999999998765
No 69
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.90 E-value=44 Score=21.08 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHHH----HcCCCC
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAAE----EAGLDL 82 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~----~~Gi~i 82 (144)
+++|+|+..+..+.+++++..|+.+.=. ..|++.
T Consensus 17 ~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 17 LVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred eEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 4677775444456789999999877533 346653
No 70
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=39.00 E-value=50 Score=20.32 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=22.3
Q ss_pred eEEEEEcCCCeEEEEcCC-chhHHHHHHHcCCCCCC
Q 032269 50 YKVKLITPGGEEEINCPD-DSFILDAAEEAGLDLPY 84 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~-g~tLL~a~~~~Gi~i~~ 84 (144)
++|++ ++|. ..+.+. |.|+++.+.+-+-.+..
T Consensus 12 i~I~l--pdG~-~~~~~~~~~T~~dia~~i~~~l~~ 44 (88)
T 1wwt_A 12 IKVTL--PDGK-QVDAESWKTTPYQIACGISQGLAD 44 (88)
T ss_dssp EEEEC--TTSC-EEEEETTTCCHHHHHHHSSTTTGG
T ss_pred EEEEE--CCCC-EEEcccCCCCHHHHHHHhhhcccc
Confidence 44555 6775 577777 89999999887555543
No 71
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=38.58 E-value=17 Score=19.57 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=18.3
Q ss_pred EEEcCCchhHHHHHHHcCCCC
Q 032269 62 EINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 62 ~i~v~~g~tLL~a~~~~Gi~i 82 (144)
.+.|.+|+||-..+.+.|+.+
T Consensus 4 ~y~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 4 TYRVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp EEEECTTCCHHHHHHHHTCCH
T ss_pred EEEEcCCCcHHHHHHHHCcCH
Confidence 478899999999999998864
No 72
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=33.51 E-value=68 Score=20.68 Aligned_cols=33 Identities=6% Similarity=0.130 Sum_probs=23.5
Q ss_pred eEEEEEcCCCeEEEEcC-CchhHHHHHH----HcCCCC
Q 032269 50 YKVKLITPGGEEEINCP-DDSFILDAAE----EAGLDL 82 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~-~g~tLL~a~~----~~Gi~i 82 (144)
..|+|+.++|...++++ +..||.+.-. ..|++.
T Consensus 8 M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~ 45 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPI 45 (107)
T ss_dssp EEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCT
T ss_pred EEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCc
Confidence 46888778886679999 9999876543 246544
No 73
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=39.43 E-value=9 Score=21.19 Aligned_cols=17 Identities=29% Similarity=0.911 Sum_probs=13.7
Q ss_pred HcCCCCCCCCCCcccccC
Q 032269 77 EAGLDLPYSCRAGACSSC 94 (144)
Q Consensus 77 ~~Gi~i~~~C~~G~CgtC 94 (144)
++|..+.+.|.+ .||.|
T Consensus 24 ~ng~~~r~~C~k-TCG~C 40 (40)
T 2lg4_A 24 RNGVKLRANCKK-TCGLC 40 (40)
Confidence 778889999975 67776
No 74
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=32.45 E-value=60 Score=27.22 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=25.3
Q ss_pred EEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCccc
Q 032269 61 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVD 104 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~ 104 (144)
++++++++.|+||++..-. ..+|+. +|.++| .|...
T Consensus 45 y~v~~~~~~~vLd~L~~ik---~l~fr~----sCam~I-NG~~~ 80 (514)
T 3kwl_A 45 YFLEYQEDQYLLDLLKQLK---GVSYSE----NIALKI-NQIAV 80 (514)
T ss_dssp EEEECCTTCBHHHHHTTST---TCCCCS----SCCEEE-TTEEE
T ss_pred EEEeCCCCCcHHHHHHHhh---hCeeec----cceEEE-CCEeh
Confidence 3467789999999998754 555666 677766 55543
No 75
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.63 E-value=60 Score=20.11 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=18.8
Q ss_pred ccceEEEEEcCCCe---EEEEcCCchhHHHH
Q 032269 47 MATYKVKLITPGGE---EEINCPDDSFILDA 74 (144)
Q Consensus 47 m~~~~V~i~~~~g~---~~i~v~~g~tLL~a 74 (144)
|..++|+|+..++. ..+++++..|+.+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHH
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHH
Confidence 34567888665553 45667799998774
No 76
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=30.54 E-value=57 Score=19.30 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=23.1
Q ss_pred ccceEEEEEcCCC-eEEEEcCCchhHHHHHH----HcCCCC
Q 032269 47 MATYKVKLITPGG-EEEINCPDDSFILDAAE----EAGLDL 82 (144)
Q Consensus 47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~----~~Gi~i 82 (144)
|...+|+++..+| ...+++++.+|+.+.-. +.|++.
T Consensus 1 m~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~ 41 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 41 (79)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 3446788865555 45688899988876432 346553
No 77
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.15 E-value=60 Score=20.35 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=21.1
Q ss_pred ccceEEEEEcCCC--eEEEEcCCchhHHHH
Q 032269 47 MATYKVKLITPGG--EEEINCPDDSFILDA 74 (144)
Q Consensus 47 m~~~~V~i~~~~g--~~~i~v~~g~tLL~a 74 (144)
|++++|+|..++. ..++++++..||.+.
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~l 34 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEF 34 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHH
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHH
Confidence 5668888865555 368999999998764
No 78
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=28.47 E-value=38 Score=19.75 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=19.8
Q ss_pred EEEEcCCCeEEEEcCCchhHHHHHHHcCCC
Q 032269 52 VKLITPGGEEEINCPDDSFILDAAEEAGLD 81 (144)
Q Consensus 52 V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~ 81 (144)
|++ +|+ .+++ ++.|+.+.+...++.
T Consensus 2 i~v---Ng~-~~~~-~~~tv~~ll~~l~~~ 26 (64)
T 2cu3_A 2 VWL---NGE-PRPL-EGKTLKEVLEEMGVE 26 (64)
T ss_dssp EEE---TTE-EECC-TTCCHHHHHHHHTBC
T ss_pred EEE---CCE-EEEc-CCCcHHHHHHHcCCC
Confidence 566 564 6888 889999999998765
No 79
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.39 E-value=1e+02 Score=18.99 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=19.1
Q ss_pred cceEEEEEcCCCeEEEEcCCchhHHHH
Q 032269 48 ATYKVKLITPGGEEEINCPDDSFILDA 74 (144)
Q Consensus 48 ~~~~V~i~~~~g~~~i~v~~g~tLL~a 74 (144)
.+++|+|+..+....+++++..|+.+.
T Consensus 16 ~~m~i~Vk~~g~~~~~~v~~~~TV~~L 42 (96)
T 1wx8_A 16 RIIRVSVKTPQDCHEFFLAENSNVRRF 42 (96)
T ss_dssp CEEEEEEECSSSEEEEEEETTCCHHHH
T ss_pred CcEEEEEEECCeEEEEEECCCCCHHHH
Confidence 346777765544567899999998764
No 80
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=27.66 E-value=84 Score=18.49 Aligned_cols=33 Identities=6% Similarity=0.044 Sum_probs=22.0
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHHHH----HcCCCC
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDAAE----EAGLDL 82 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~----~~Gi~i 82 (144)
.+|.|+..+| ...+++++..|+.+.=. ..|+++
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 42 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH
Confidence 4677766566 45689999999886432 346553
No 81
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.59 E-value=29 Score=20.89 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.0
Q ss_pred EEEEcCCchhHHHHHHHcCCCC
Q 032269 61 EEINCPDDSFILDAAEEAGLDL 82 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~i 82 (144)
..+.|.+|+||...+++.|+.+
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~ 37 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTM 37 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCH
T ss_pred EEEEECCCCcHHHHHHHHCcCH
Confidence 3578999999999999998875
No 82
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=27.06 E-value=77 Score=20.15 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=19.9
Q ss_pred ccceEEEEEcCCCeEEEEcCCchhHHHH
Q 032269 47 MATYKVKLITPGGEEEINCPDDSFILDA 74 (144)
Q Consensus 47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a 74 (144)
+..++|+|+..+....+++++..|+.+.
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~L 50 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQF 50 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHH
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHH
Confidence 3456777765544567899999998764
No 83
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=26.54 E-value=86 Score=18.50 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=18.0
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHH
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDA 74 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a 74 (144)
.+|+|+..++ ...+++++..|+.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~l 29 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENV 29 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHH
Confidence 4677765555 457889999998774
No 84
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.99 E-value=82 Score=18.89 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=18.9
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHH
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAA 75 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~ 75 (144)
.++|+|+..++ ...+++++..|+.+.-
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK 34 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAINPNSFILGLK 34 (87)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHH
T ss_pred CEEEEEEcCCCCEEEEEeCCCChHHHHH
Confidence 45777755455 4578999999987743
No 85
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=25.94 E-value=84 Score=19.69 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHH
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDA 74 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a 74 (144)
.++|.|+..++..++++++..||.+.
T Consensus 15 ~~~I~Vk~~~~~~~l~v~~~~TV~~L 40 (94)
T 2kan_A 15 KIHVTVKFPSKQFTVEVDRTETVSSL 40 (94)
T ss_dssp CEEEEEECSSCEEEEEECTTCBHHHH
T ss_pred CEEEEEEcCCcEEEEEECCCCcHHHH
Confidence 46788866666678999999998774
No 86
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.52 E-value=61 Score=20.51 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCeE-EEEcCCchhHHHHHH----HcCCCCC
Q 032269 49 TYKVKLITPGGEE-EINCPDDSFILDAAE----EAGLDLP 83 (144)
Q Consensus 49 ~~~V~i~~~~g~~-~i~v~~g~tLL~a~~----~~Gi~i~ 83 (144)
+++|+|+..+..+ .+++++.+|+.+.=. ..|++..
T Consensus 7 ~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~ 46 (96)
T 1wgg_A 7 GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPA 46 (96)
T ss_dssp EEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTT
T ss_pred EEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 4577775444456 488999999877433 3566543
No 87
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=25.46 E-value=30 Score=25.24 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=18.8
Q ss_pred chhHHHHHHHcCC-C----CCCCCCCc----ccccC
Q 032269 68 DSFILDAAEEAGL-D----LPYSCRAG----ACSSC 94 (144)
Q Consensus 68 g~tLL~a~~~~Gi-~----i~~~C~~G----~CgtC 94 (144)
-.-|.+.+.+.|+ + ..++|..| .||.|
T Consensus 166 K~ei~~~a~~~gl~~~~~~~t~sC~~~~~~~~CG~C 201 (232)
T 2pg3_A 166 KAETWALADYYQQLDTVRYHTLTCYNGIKGDGCGQC 201 (232)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCCTTSCCTTTTSCS
T ss_pred HHHHHHHHHHcCCCcccccccCCCcCCCCCCcCCcC
Confidence 3558888899998 4 47888632 46655
No 88
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=25.32 E-value=1.4e+02 Score=19.31 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=40.9
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHHH----HcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEe
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAAE----EAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT 123 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~----~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa 123 (144)
.|+|.++..+| ...+++++..|+.+.-. ..|++.... ..+..|.. ..+...|++-...++..|-
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q----------rLi~~Gk~-L~D~~tL~~ygI~~gstI~ 77 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ----------RLIWAGKQ-LEDGRTLSDYNIQRESTLH 77 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE----------EEEETTEE-CCTTCBTTTTTCCSSCEEE
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHE----------EEEECCEE-CCCCCcHHHCCCCCCCEEE
Confidence 36666655555 45789999999876432 345543211 11122322 1233345555566677776
Q ss_pred eeceECCCeEEEc
Q 032269 124 CAAYPTSDVTIET 136 (144)
Q Consensus 124 Cq~~~~~dl~I~~ 136 (144)
...+..+...+.+
T Consensus 78 l~~~~~GG~~~~~ 90 (114)
T 2kdi_A 78 LVLRLRGGSMGGA 90 (114)
T ss_dssp EEECCCSSCCCSS
T ss_pred EEEEcCCCceeec
Confidence 6666555544433
No 89
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=24.98 E-value=35 Score=21.11 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=20.7
Q ss_pred eEEEEEcCCCeEEEEcCCchhHHHHHH
Q 032269 50 YKVKLITPGGEEEINCPDDSFILDAAE 76 (144)
Q Consensus 50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~ 76 (144)
..|+|..++|...+++++..|+-+...
T Consensus 5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~ 31 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITATKRETAATFLK 31 (80)
T ss_dssp CCCEEECSSEEEECCCCSSCCHHHHHH
T ss_pred EEEEEECCCCCEEEEcCCcChHHHHHH
Confidence 467887788877899999888766544
No 90
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=24.90 E-value=55 Score=21.29 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=18.2
Q ss_pred EEEEcCCchhHHHHHHHcCCC
Q 032269 61 EEINCPDDSFILDAAEEAGLD 81 (144)
Q Consensus 61 ~~i~v~~g~tLL~a~~~~Gi~ 81 (144)
..+++++|.|+.+++.+.|+.
T Consensus 28 ~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 28 KSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp EEEEEETTCBHHHHHHHHTHH
T ss_pred EEEEcCCCCcHHHHHHHcCCC
Confidence 356789999999999999985
No 91
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=24.28 E-value=36 Score=25.70 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=24.6
Q ss_pred cceEEEEEcCCCeEEEEcCCchhHHHHHHHcCC
Q 032269 48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGL 80 (144)
Q Consensus 48 ~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi 80 (144)
..-+|++..++....+.++.|++|-+.+.++|+
T Consensus 2 ~~~~v~v~~~g~~~~~~i~~~eRLsdll~ra~~ 34 (236)
T 3p42_A 2 AQGMVTIYLPGEQQTLSVGPVENVAQLVTQPQL 34 (236)
T ss_dssp -CEEEEEECTTSSCEEEEEEESBHHHHHTCTTT
T ss_pred CceeEEEEECCCceeEeeCCCCcHHHHHhhccC
Confidence 344566655555457999999999999999984
No 92
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=23.58 E-value=50 Score=20.51 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=20.4
Q ss_pred eEEEEEcCCCeEEE-EcCCchhHHHHHH----HcCCCC
Q 032269 50 YKVKLITPGGEEEI-NCPDDSFILDAAE----EAGLDL 82 (144)
Q Consensus 50 ~~V~i~~~~g~~~i-~v~~g~tLL~a~~----~~Gi~i 82 (144)
++|+|+..+..+.+ ++++.+|+.+.=. ..|++.
T Consensus 8 m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~ 45 (90)
T 1v5t_A 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP 45 (90)
T ss_dssp CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCT
T ss_pred EEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 45666443344567 8899999877433 356653
No 93
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.31 E-value=1.3e+02 Score=18.95 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHHH
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDAA 75 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~ 75 (144)
+++|+|+..+++..++++...||.+.-
T Consensus 17 ~m~I~Vk~~~g~~~l~v~~~~TV~~LK 43 (106)
T 1wx7_A 17 LIKVTVKTPKDKEDFSVTDTCTIQQLK 43 (106)
T ss_dssp EEEEEEECSSCEEEEEEETTCCHHHHH
T ss_pred eEEEEEEeCCCcEEEEECCCCcHHHHH
Confidence 457777666666679999999987643
No 94
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=23.14 E-value=83 Score=19.95 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCeEEEEcCCchhHHHH
Q 032269 49 TYKVKLITPGGEEEINCPDDSFILDA 74 (144)
Q Consensus 49 ~~~V~i~~~~g~~~i~v~~g~tLL~a 74 (144)
+++|+|+..+++..+++++..|+.+.
T Consensus 22 ~m~I~Vk~~~g~~~l~v~~~~TV~~L 47 (100)
T 1yqb_A 22 LIKVTVKTPKDKEDFSVTDTCTIQQL 47 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTCBHHHH
T ss_pred eEEEEEEcCCCcEEEEECCCCcHHHH
Confidence 46788866666668999999998764
No 95
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=22.79 E-value=87 Score=18.13 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=18.0
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHHH
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDAA 75 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~ 75 (144)
.+|+|+. +| ...+++++..|+.+.-
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK 30 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFK 30 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHH
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHH
Confidence 6777765 44 4578899999987643
No 96
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.35 E-value=1.1e+02 Score=19.91 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=18.1
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHH
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDA 74 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a 74 (144)
.+|+|+.-+| ...+++++..|+.+.
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred EEEEEEecCCCEEEEEECCCChHHHH
Confidence 4677755555 567889999998763
No 97
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.82 E-value=97 Score=20.18 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=22.7
Q ss_pred ccccceEEEEEcCC----C-eEEEEcCCchhHHHH----HHHcCCCCCC
Q 032269 45 VAMATYKVKLITPG----G-EEEINCPDDSFILDA----AEEAGLDLPY 84 (144)
Q Consensus 45 ~~m~~~~V~i~~~~----g-~~~i~v~~g~tLL~a----~~~~Gi~i~~ 84 (144)
+.|..++|.. ++ + ...++++++.|+.+. ..+.|++...
T Consensus 13 tg~ati~V~~--~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~q 59 (100)
T 1wju_A 13 TGIATIEVFL--PPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENY 59 (100)
T ss_dssp CCEEEEEEEC--CTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTT
T ss_pred cceEEEEEEe--cCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHH
Confidence 3355455554 34 3 467899999998753 2345665433
No 98
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=20.72 E-value=1.2e+02 Score=17.93 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=17.5
Q ss_pred eEEEEEcCCC-eEEEEcCCchhHHHH
Q 032269 50 YKVKLITPGG-EEEINCPDDSFILDA 74 (144)
Q Consensus 50 ~~V~i~~~~g-~~~i~v~~g~tLL~a 74 (144)
++|+|+..+| ...+++++..|+.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHH
Confidence 4666655445 457899999998764
No 99
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=20.44 E-value=1e+02 Score=18.76 Aligned_cols=27 Identities=4% Similarity=0.003 Sum_probs=18.1
Q ss_pred ceEEEEEcCCC-eEEEEcCCchhHHHHH
Q 032269 49 TYKVKLITPGG-EEEINCPDDSFILDAA 75 (144)
Q Consensus 49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~ 75 (144)
+.+|.|+..+| ...+++++..|+.+.-
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK 31 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLK 31 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHH
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHH
Confidence 35677754445 4568889999987643
No 100
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=20.26 E-value=74 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEEEEcCCCeEEEEcCCchhHHHHHHHc
Q 032269 51 KVKLITPGGEEEINCPDDSFILDAAEEA 78 (144)
Q Consensus 51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~ 78 (144)
+|++ ++|. ..+++.|.|+++.+.+-
T Consensus 3 ~I~~--p~G~-~~~~~~g~T~~dia~~i 27 (224)
T 1tke_A 3 VITL--PDGS-QRHYDHAVSPMDVALDI 27 (224)
T ss_dssp EEEC--TTSC-EEECSSCBCHHHHHHHH
T ss_pred EEEe--CCCC-EEEecCCCCHHHHHHHH
Confidence 4555 6776 68999999999998764
Done!