BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032270
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
GN=At5g01610 PE=1 SV=1
Length = 170
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 29 ELLAEINLPKGLLPLNDLVEVGYNRATG--FVWLKQKKRTEHKFRSIGRNVSYDTEVTGF 86
ELL E +LP G+ P D ++ T V + +K S+ + + T VTG
Sbjct: 56 ELLKEYDLPIGIFP-GDATNYEFDEETKKLTVLIPSICEVGYKDSSV---LKFTTTVTGH 111
Query: 87 VEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFPISAFELDEN 144
+E ++ + G+K+K ++IWV ++ I TDA K+ F + G+ +S A+E+ N
Sbjct: 112 LEKGKLTDVEGIKTK-VMIWVKVTSISTDAS---KVYF--TAGMKKSRSRDAYEVQRN 163
>sp|B1NWJ3|YCF2_MANES Protein ycf2 OS=Manihot esculenta GN=ycf2 PE=3 SV=1
Length = 2312
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R+I N+ YD+ + FV+ R +L G
Sbjct: 343 VWLVNKDRFFSKARNISSNIQYDSTRSSFVQGRNSSQLKG 382
>sp|A4GYV4|YCF2_POPTR Protein ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3 SV=1
Length = 2285
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R+I N+ YD+ + FV+ R +L G
Sbjct: 356 VWLVNKDRFFSKARNISSNIQYDSTRSSFVQGRDSSQLKG 395
>sp|Q332R7|YCF2_LACSA Protein ycf2 OS=Lactuca sativa GN=ycf2-A PE=3 SV=1
Length = 2264
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R++ N+ YD+ + FV+ R +L G
Sbjct: 356 VWLVNKDRFFRKVRNVSSNIQYDSTRSSFVQVRDSSQLKG 395
>sp|B2LMN7|YCF2_GUIAB Protein ycf2 OS=Guizotia abyssinica GN=ycf2-A PE=3 SV=1
Length = 2276
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R++ N+ YD+ + FV+ R +L G
Sbjct: 356 VWLVNKDRFFRKVRNVSSNIQYDSTRSSFVQVRDSSQLKG 395
>sp|A4QLE9|YCF2_LEPVR Protein ycf2 OS=Lepidium virginicum GN=ycf2-A PE=3 SV=1
Length = 2287
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISDIYTD 115
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+ Y++
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISNEYSE 413
>sp|P41516|TOP2A_RAT DNA topoisomerase 2-alpha OS=Rattus norvegicus GN=Top2a PE=2 SV=1
Length = 1526
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 83 VTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFP 135
+T F+EDRR R+L G+ L ++ Y D + + I F+NS RS P
Sbjct: 663 LTNFMEDRRQRKLLGLPEDYLYGQTTMYLTYNDFINKELILFSNSDN-ERSIP 714
>sp|O42131|TOP2B_CHICK DNA topoisomerase 2-beta OS=Gallus gallus GN=TOP2B PE=2 SV=1
Length = 1627
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 83 VTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFP 135
+T F+EDRR RRL G+ + L + Y D + + I F+NS RS P
Sbjct: 691 LTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDN-ERSIP 742
>sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3
Length = 1626
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 83 VTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFP 135
+T F+EDRR RRL G+ + L + Y D + + I F+NS RS P
Sbjct: 686 LTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDN-ERSIP 737
>sp|Q14F97|YCF2_POPAL Protein ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1
Length = 2282
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R+I N+ YD+ + F++ R +L G
Sbjct: 356 VWLVNKDRFFSKARNISSNIQYDSTRSSFLQGRDSSQLKG 395
>sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta OS=Mus musculus GN=Top2b PE=1 SV=2
Length = 1612
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 83 VTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFP 135
+T F+EDRR RRL G+ + L + Y D + + I F+NS RS P
Sbjct: 674 LTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDN-ERSIP 725
>sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta OS=Cricetulus longicaudatus GN=TOP2B PE=2
SV=1
Length = 1612
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 83 VTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFP 135
+T F+EDRR RRL G+ + L + Y D + + I F+NS RS P
Sbjct: 674 LTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDN-ERSIP 725
>sp|Q09WV7|YCF2_MORIN Protein ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1
Length = 2292
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL+ K R K R++ N+ YD+ + FV+ +L G
Sbjct: 358 VWLENKDRFFSKVRNVSSNIQYDSTRSSFVQVTDFSQLKG 397
>sp|A0ZZ78|YCF2_GOSBA Protein ycf2 OS=Gossypium barbadense GN=ycf2-A PE=3 SV=1
Length = 2298
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL + R K R++ N+ YD+ + FV+ R+L G
Sbjct: 356 VWLVNRDRFFSKVRNVSSNIQYDSTRSSFVQVTDSRQLKG 395
>sp|Q2L949|YCF2_GOSHI Protein ycf2 OS=Gossypium hirsutum GN=ycf2-A PE=3 SV=1
Length = 2298
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL + R K R++ N+ YD+ + FV+ R+L G
Sbjct: 356 VWLVNRDRFFSKVRNVSSNIQYDSTRSSFVQVTDSRQLKG 395
>sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3
Length = 1531
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 83 VTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFP 135
+T F+EDRR R+L G+ L + Y D + + I F+NS RS P
Sbjct: 665 LTNFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDN-ERSIP 716
>sp|A6MM80|YCF2_BUXMI Protein ycf2 OS=Buxus microphylla GN=ycf2-A PE=3 SV=1
Length = 2281
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R++ N+ YD+ + FV+ R +L G
Sbjct: 358 VWLVNKDRFFSKVRNVSSNIQYDSTRSIFVQVRDSSQLKG 397
>sp|P24032|MLRN_CHICK Myosin regulatory light chain 2, smooth muscle minor isoform
OS=Gallus gallus PE=2 SV=2
Length = 172
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 22 ICKQKSHELLAEINLPKGLLPLNDLVEVGYNRATG------FVWLKQKKRTEHKFRSIGR 75
I K+ H++LA + G P ++ ++ N A G F+ + +K + R
Sbjct: 49 IDKEDLHDMLASL----GKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIR 104
Query: 76 NV--SYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITF 124
N +D E TGF+++ +R L + + ++Y +AP KK F
Sbjct: 105 NAFACFDEEATGFIQEDYLRELLTTMG-DRFTDEEVDELYREAPIDKKGNF 154
>sp|Q02099|RAD3_SCHPO Protein kinase rad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rad3 PE=1 SV=2
Length = 2386
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 16 IYHGESICKQKSHELLAEINLPKGLL 41
IYHG IC++ H L++ INL G L
Sbjct: 294 IYHGLPICEKSKHILMSSINLTLGSL 319
>sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus griseus GN=TOP2A PE=1 SV=1
Length = 1526
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 83 VTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFP 135
+T F+EDRR R+L G+ L + Y D + + I F+NS RS P
Sbjct: 664 LTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDN-ERSIP 715
>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1
Length = 1533
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 83 VTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFP 135
+T F+EDRR R+L G+ L + Y D + + I F+NS RS P
Sbjct: 665 LTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDN-ERSIP 716
>sp|P46000|FASD_ECOLX Outer membrane usher protein FasD OS=Escherichia coli GN=fasD PE=3
SV=1
Length = 835
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 46 LVEVGYNRATG---FVWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKE 102
+V V YN G LK+ T F S+ V D+E+TG ++D L G+ SK
Sbjct: 739 VVPVKYNLFKGKQIVFSLKRYDGTPLPFGSVVSLVGSDSEITGIIDDAGRVYLAGIPSKG 798
Query: 103 LL 104
+L
Sbjct: 799 IL 800
>sp|A4QLN7|YCF2_LOBMA Protein ycf2 OS=Lobularia maritima GN=ycf2-A PE=3 SV=1
Length = 2293
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISN 409
>sp|A7Y3J6|YCF2_IPOPU Protein ycf2 OS=Ipomoea purpurea GN=ycf2-A PE=3 SV=1
Length = 2197
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 56 GFVWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
G VWL +K R K R++ N+ YD+ + FV+ +L G
Sbjct: 308 GNVWLGKKDRFFSKVRNVWSNIQYDSTRSSFVQVTDSSQLKG 349
>sp|A4QJX4|YCF2_OLIPU Protein ycf2 OS=Olimarabidopsis pumila GN=ycf2-A PE=3 SV=1
Length = 2291
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISN 409
>sp|A4QKN5|YCF2_CAPBU Protein ycf2 OS=Capsella bursa-pastoris GN=ycf2-A PE=3 SV=1
Length = 2289
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISN 409
>sp|P56786|YCF2_ARATH Protein ycf2 OS=Arabidopsis thaliana GN=ycf2-A PE=3 SV=1
Length = 2294
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISN 409
>sp|A4QKX4|YCF2A_CRUWA Protein ycf2 A OS=Crucihimalaya wallichii GN=ycf2-A PE=3 SV=1
Length = 2293
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 358 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISN 411
>sp|A4QLX6|YCF2_NASOF Protein ycf2 OS=Nasturtium officinale GN=ycf2-A PE=3 SV=1
Length = 2290
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISN 409
>sp|A4QKZ7|YCF2B_CRUWA Protein ycf2 B OS=Crucihimalaya wallichii GN=ycf2-B PE=3 SV=1
Length = 2293
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 358 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISN 411
>sp|A4QKE8|YCF2_BARVE Protein ycf2 OS=Barbarea verna GN=ycf2-A PE=3 SV=1
Length = 2290
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISN 409
>sp|A0A379|YCF2_COFAR Protein ycf2 OS=Coffea arabica GN=ycf2-A PE=3 SV=1
Length = 2281
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R++ N+ YD+ + FV+ +L G
Sbjct: 353 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKG 392
>sp|A4QK61|YCF2_ARAHI Protein ycf2 OS=Arabis hirsuta GN=ycf2-A PE=3 SV=1
Length = 2296
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVKVTDSSQLNGSSDQFIDPFDSISN 409
>sp|A4QJF8|YCF2_AETCO Protein ycf2 OS=Aethionema cordifolium GN=ycf2-A PE=3 SV=1
Length = 2298
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQFIDHFDSISN 409
>sp|Q0ZIV6|YCF2_VITVI Protein ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1
Length = 2300
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAP 117
VWL K R K R++ N+ YD+ + FV+ +L G + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQSRDHFDSISN-----E 410
Query: 118 DSKKITFAN 126
DSK T N
Sbjct: 411 DSKYHTLIN 419
>sp|A4QJP2|YCF2_AETGR Protein ycf2 OS=Aethionema grandiflora GN=ycf2-A PE=3 SV=1
Length = 2289
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISD 111
VWL K R K R++ N+ YD+ + FV+ +L G + + + SIS+
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQFIDHFDSISN 409
>sp|B1A978|YCF2_CARPA Protein ycf2 OS=Carica papaya GN=ycf2-A PE=3 SV=1
Length = 2298
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R++ N+ YD+ + FV+ +L G
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKG 395
>sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus GN=Top2a PE=1 SV=2
Length = 1528
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 83 VTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFANSTGLARSFP 135
+T F+EDRR R+L G+ L + Y D + + I F+NS RS P
Sbjct: 664 LTNFMEDRRQRKLLGLPEDYLYGQSTSYLTYNDFINKELILFSNSDN-ERSIP 715
>sp|Q9B1K6|YCF2_LOTJA Protein ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1
Length = 2298
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R++ N+ YD+ + F++ +L G
Sbjct: 357 VWLVNKDRFFSKIRNVSSNIQYDSTRSSFIQVTDSSQLKG 396
>sp|Q49KT6|YCF2_EUCGG Protein ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3
SV=1
Length = 2280
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R++ N+ YD+ + FV+ +L G
Sbjct: 356 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKG 395
>sp|Q09MB4|YCF2_CITSI Protein ycf2 OS=Citrus sinensis GN=ycf2-A PE=3 SV=1
Length = 2282
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R++ N+ YD+ + FV+ +L G
Sbjct: 356 VWLVNKDRFFTKVRNVSSNIQYDSTRSSFVQVTDSSQLKG 395
>sp|Q2PMM5|YCF2_SOYBN Protein ycf2 OS=Glycine max GN=ycf2-A PE=3 SV=1
Length = 2287
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 58 VWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTG 97
VWL K R K R++ N+ YD+ + F++ +L G
Sbjct: 357 VWLVNKDRFFSKVRNVSSNIQYDSTRSSFIQVTGSSQLKG 396
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,984,397
Number of Sequences: 539616
Number of extensions: 1993488
Number of successful extensions: 4290
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4250
Number of HSP's gapped (non-prelim): 49
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)