Query 032270
Match_columns 144
No_of_seqs 107 out of 348
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 11:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04398 DUF538: Protein of un 100.0 1.7E-47 3.7E-52 281.9 7.6 110 26-142 1-110 (110)
2 cd03697 EFTU_II EFTU_II: Elong 46.3 58 0.0013 22.0 4.8 45 80-126 15-69 (87)
3 PRK12442 translation initiatio 44.8 62 0.0013 23.2 4.8 54 54-126 18-71 (87)
4 PF15406 PH_6: Pleckstrin homo 40.0 28 0.0006 26.1 2.5 38 33-72 59-96 (112)
5 PF05963 Cytomega_US3: Cytomeg 39.6 1E+02 0.0022 25.0 5.8 60 34-99 15-75 (187)
6 PRK09457 astD succinylglutamic 39.2 28 0.0006 31.1 2.8 31 12-42 162-195 (487)
7 cd02410 archeal_CPSF_KH The ar 36.9 56 0.0012 25.5 3.8 54 9-68 34-90 (145)
8 PF03975 CheD: CheD chemotacti 33.2 1.1E+02 0.0023 22.2 4.6 36 25-64 67-108 (114)
9 TIGR02288 PaaN_2 phenylacetic 32.7 33 0.00072 31.7 2.3 32 12-43 221-259 (551)
10 cd07147 ALDH_F21_RNP123 Aldehy 31.9 47 0.001 29.0 3.0 32 11-42 149-184 (452)
11 TIGR02299 HpaE 5-carboxymethyl 31.0 43 0.00092 29.8 2.6 31 12-42 163-196 (488)
12 cd07113 ALDH_PADH_NahF Escheri 30.4 51 0.0011 29.2 3.0 31 12-42 170-203 (477)
13 cd07110 ALDH_F10_BADH Arabidop 30.3 51 0.0011 28.9 3.0 31 12-42 148-181 (456)
14 PF08300 HCV_NS5a_1a: Hepatiti 30.3 43 0.00093 22.6 1.9 17 80-97 27-43 (62)
15 cd07104 ALDH_BenzADH-like ALDH 30.2 51 0.0011 28.4 2.9 31 12-42 126-160 (431)
16 smart00540 LEM in nuclear memb 29.7 45 0.00097 20.8 1.8 16 24-39 8-23 (44)
17 PRK13968 putative succinate se 29.6 54 0.0012 29.1 3.0 31 12-42 154-187 (462)
18 PRK09406 gabD1 succinic semial 28.6 55 0.0012 29.0 2.9 31 12-42 151-184 (457)
19 cd07098 ALDH_F15-22 Aldehyde d 28.4 56 0.0012 28.7 2.9 30 13-42 149-185 (465)
20 PRK13488 chemoreceptor glutami 28.1 1.1E+02 0.0024 23.8 4.2 36 25-64 110-151 (157)
21 cd07150 ALDH_VaniDH_like Pseud 27.6 59 0.0013 28.4 2.9 31 12-42 147-180 (451)
22 cd07127 ALDH_PAD-PaaZ Phenylac 27.5 53 0.0012 30.3 2.7 31 12-42 221-258 (549)
23 PRK00197 proA gamma-glutamyl p 26.9 51 0.0011 28.9 2.4 31 12-42 141-178 (417)
24 PRK10090 aldehyde dehydrogenas 26.6 66 0.0014 28.2 3.0 31 12-42 99-132 (409)
25 cd07131 ALDH_AldH-CAJ73105 Unc 25.6 70 0.0015 28.2 3.0 31 12-42 163-196 (478)
26 PRK09407 gabD2 succinic semial 25.5 68 0.0015 29.0 3.0 31 12-42 182-215 (524)
27 PF09087 Cyc-maltodext_N: Cycl 25.3 1.1E+02 0.0024 21.7 3.5 43 77-127 19-70 (88)
28 cd07151 ALDH_HBenzADH NADP+-de 25.0 71 0.0015 28.2 3.0 32 12-43 158-193 (465)
29 cd01256 PH_dynamin Dynamin ple 24.8 42 0.00091 25.0 1.2 20 36-57 41-60 (110)
30 TIGR02518 EutH_ACDH acetaldehy 24.8 71 0.0015 28.8 2.9 31 12-42 132-169 (488)
31 cd07090 ALDH_F9_TMBADH NAD+-de 24.4 66 0.0014 28.2 2.6 30 13-42 145-177 (457)
32 cd07119 ALDH_BADH-GbsA Bacillu 24.2 75 0.0016 28.1 3.0 31 12-42 162-195 (482)
33 PF02402 Lysis_col: Lysis prot 24.0 38 0.00082 21.6 0.7 26 76-101 20-46 (46)
34 KOG2455 Delta-1-pyrroline-5-ca 23.8 47 0.001 30.8 1.6 16 26-41 241-256 (561)
35 TIGR03216 OH_muco_semi_DH 2-hy 23.6 80 0.0017 28.0 3.0 31 12-42 167-200 (481)
36 cd07152 ALDH_BenzADH NAD-depen 23.6 77 0.0017 27.7 2.9 32 12-43 138-173 (443)
37 PLN02315 aldehyde dehydrogenas 23.6 76 0.0017 28.7 2.9 31 12-42 182-219 (508)
38 PRK13497 chemoreceptor glutami 23.6 1.7E+02 0.0037 23.4 4.6 47 13-63 93-155 (184)
39 cd07088 ALDH_LactADH-AldA Esch 23.5 81 0.0018 27.7 3.0 31 12-42 161-194 (468)
40 cd03700 eEF2_snRNP_like_II EF2 23.1 2.5E+02 0.0054 19.0 5.7 53 75-127 16-81 (93)
41 PF10979 DUF2786: Protein of u 23.0 48 0.001 20.4 1.1 17 21-37 25-41 (43)
42 cd07102 ALDH_EDX86601 Uncharac 23.0 86 0.0019 27.3 3.0 31 12-42 144-177 (452)
43 cd07101 ALDH_SSADH2_GabD2 Myco 22.8 86 0.0019 27.5 3.0 31 12-42 146-179 (454)
44 cd07105 ALDH_SaliADH Salicylal 22.3 89 0.0019 27.2 3.0 31 12-42 126-159 (432)
45 cd07144 ALDH_ALD2-YMR170C Sacc 22.3 86 0.0019 27.8 3.0 31 12-42 172-205 (484)
46 cd07091 ALDH_F1-2_Ald2-like AL 22.2 88 0.0019 27.6 3.0 31 12-42 169-202 (476)
47 cd07093 ALDH_F8_HMSADH Human a 22.1 89 0.0019 27.3 3.0 32 12-43 145-179 (455)
48 cd07115 ALDH_HMSADH_HapE Pseud 21.9 82 0.0018 27.6 2.7 31 12-42 145-178 (453)
49 cd07140 ALDH_F1L_FTFDH 10-form 21.9 87 0.0019 28.1 2.9 31 12-42 175-208 (486)
50 cd07109 ALDH_AAS00426 Uncharac 21.8 91 0.002 27.3 3.0 31 12-42 145-178 (454)
51 cd07142 ALDH_F2BC Arabidosis a 21.4 91 0.002 27.6 2.9 31 12-42 169-202 (476)
52 TIGR03240 arg_catab_astD succi 21.3 87 0.0019 27.9 2.8 31 12-42 160-193 (484)
53 cd07111 ALDH_F16 Aldehyde dehy 21.1 92 0.002 27.9 2.9 31 12-42 175-208 (480)
54 PRK13498 chemoreceptor glutami 21.1 2.1E+02 0.0045 22.4 4.6 36 25-64 118-159 (167)
55 PRK13493 chemoreceptor glutami 20.9 2E+02 0.0044 23.5 4.6 36 25-64 142-183 (213)
56 cd07146 ALDH_PhpJ Streptomyces 20.9 99 0.0021 27.2 3.0 30 13-42 149-181 (451)
57 PF01849 NAC: NAC domain; Int 20.8 2.4E+02 0.0051 17.9 4.3 31 26-60 3-33 (58)
58 cd07103 ALDH_F5_SSADH_GabD Mit 20.5 98 0.0021 26.9 2.9 30 13-42 146-178 (451)
59 cd07145 ALDH_LactADH_F420-Bios 20.4 1E+02 0.0022 27.0 3.0 31 12-42 151-184 (456)
60 COG2706 3-carboxymuconate cycl 20.1 2.7E+02 0.0058 24.7 5.4 36 43-78 63-104 (346)
No 1
>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function.; PDB: 1YDU_A.
Probab=100.00 E-value=1.7e-47 Score=281.92 Aligned_cols=110 Identities=47% Similarity=0.854 Sum_probs=83.1
Q ss_pred hHHHHHHhCCCCCCCcCCCCceEEEEEccCcEEEEEeCCeEEEEEcccceEEEEceEEEEEEccCceeeccceeEEEEEe
Q 032270 26 KSHELLAEINLPKGLLPLNDLVEVGYNRATGFVWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLI 105 (144)
Q Consensus 26 ta~elL~~~glP~GLLPl~~V~~y~l~~~tG~~~v~l~~~c~~~F~~~~~~v~Y~~~ItG~i~~g~i~~L~GVkvK~lf~ 105 (144)
||||||++||||+|||| .+|++|+||++||+|||+|+++|+|+|+. |+|+|+++|||+|++|+|++|+|||+|+||+
T Consensus 1 tayelL~~~glP~GLLP-~~v~~y~l~~~tG~f~v~l~~~C~~~~~~--~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~ 77 (110)
T PF04398_consen 1 TAYELLEEYGLPRGLLP-LGVTEYGLNRDTGFFWVKLKSPCEFRFEG--YLVSYDSEITGYIEKGKIKNLTGVKVKELFL 77 (110)
T ss_dssp --HHHHHHHS-TT-TTT-SSS-EEEE-TTT-SEEEE-SS-EEEESTT--SEEEE-SEEEEEE-SS-EEEEES-EEE-SSS
T ss_pred CHHHhHHHcCCCCCcCC-CCceEEEEecCCcEEEEEecCCEEEEEEE--EEEEEcCeEEEEECCCcCccccCEEEEEEEE
Confidence 79999999999999999 57899999999999999999999999986 8999999999999999999999999999999
Q ss_pred eeeeeEEEEcCCCCCeEEEEeCCceeeeecccccccC
Q 032270 106 WVSISDIYTDAPDSKKITFANSTGLARSFPISAFELD 142 (144)
Q Consensus 106 Wv~I~eI~vd~~~~~~i~F~~g~gisksfP~~~F~~~ 142 (144)
|++|++|.++ +++|+|++|. ++++||+++|++|
T Consensus 78 W~~v~~i~~~---~~~i~F~~g~-~s~sfp~~~F~~s 110 (110)
T PF04398_consen 78 WVPVTEISVD---GDKIYFKVGG-ISKSFPVSAFEES 110 (110)
T ss_dssp EES---BEE----SSSEE-TTSS-SS----TTTTSS-
T ss_pred EeeEEEEEEc---CCEEEEEEee-EeccCCHHHhccC
Confidence 9999999995 8999999976 9999999999986
No 2
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=46.34 E-value=58 Score=22.02 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=29.0
Q ss_pred ceEEEEEEccCceeeccceeEEEE----EeeeeeeEEEEcCC------CCCeEEEEe
Q 032270 80 DTEVTGFVEDRRMRRLTGVKSKEL----LIWVSISDIYTDAP------DSKKITFAN 126 (144)
Q Consensus 80 ~~~ItG~i~~g~i~~L~GVkvK~l----f~Wv~I~eI~vd~~------~~~~i~F~~ 126 (144)
.+.++|+|+.|+|+ .|-++..+ .....|..|.+.+. +|+.+.+.+
T Consensus 15 G~vv~G~v~~G~v~--~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l 69 (87)
T cd03697 15 GTVVTGRIERGTIK--VGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLL 69 (87)
T ss_pred EEEEEEEECCCCCc--cCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEE
Confidence 35699999999998 44444443 45677888877632 245555544
No 3
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=44.84 E-value=62 Score=23.21 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=37.4
Q ss_pred cCcEEEEEeCCeEEEEEcccceEEEEceEEEEEEccCceeeccceeEEEEEeeeeeeEEEEcCCCCCeEEEEe
Q 032270 54 ATGFVWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVKSKELLIWVSISDIYTDAPDSKKITFAN 126 (144)
Q Consensus 54 ~tG~~~v~l~~~c~~~F~~~~~~v~Y~~~ItG~i~~g~i~~L~GVkvK~lf~Wv~I~eI~vd~~~~~~i~F~~ 126 (144)
.++.|+|.|.+.++ +- ..|+|++...+|+=+.|=+|++- +|- - +++-+.|.|.-
T Consensus 18 p~~~frV~LenG~~---------vl--a~isGKmR~~rIrIl~GD~V~VE-~sp------Y-DltkGRIiyR~ 71 (87)
T PRK12442 18 PDSRFRVTLENGVE---------VG--AYASGRMRKHRIRILAGDRVTLE-LSP------Y-DLTKGRINFRH 71 (87)
T ss_pred CCCEEEEEeCCCCE---------EE--EEeccceeeeeEEecCCCEEEEE-ECc------c-cCCceeEEEEe
Confidence 36778887765322 22 67899999999999999999887 341 1 13356777765
No 4
>PF15406 PH_6: Pleckstrin homology domain
Probab=39.97 E-value=28 Score=26.11 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=28.1
Q ss_pred hCCCCCCCcCCCCceEEEEEccCcEEEEEeCCeEEEEEcc
Q 032270 33 EINLPKGLLPLNDLVEVGYNRATGFVWLKQKKRTEHKFRS 72 (144)
Q Consensus 33 ~~glP~GLLPl~~V~~y~l~~~tG~~~v~l~~~c~~~F~~ 72 (144)
.---|.|+++|.++.+-.-+ .+-.|.++.++. .|+|+.
T Consensus 59 dka~P~GiinLadase~~~~-g~~kF~f~~~G~-khtF~A 96 (112)
T PF15406_consen 59 DKASPSGIINLADASEPEKD-GSNKFHFKIKGH-KHTFEA 96 (112)
T ss_pred cccCCcceEehhhccccccC-CCceEEEEeCCc-eeeeec
Confidence 34479999999998887653 234588888665 689974
No 5
>PF05963 Cytomega_US3: Cytomegalovirus US3 protein; InterPro: IPR009237 US3 of human cytomegalovirus is an endoplasmic reticulum resident transmembrane glycoprotein that binds to major histocompatibility complex class I molecules and prevents their departure. The endoplasmic reticulum retention signal of the US3 protein is contained in the luminal domain of the protein [].; PDB: 1IM3_L.
Probab=39.63 E-value=1e+02 Score=25.02 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=23.3
Q ss_pred CCCCCCCc-CCCCceEEEEEccCcEEEEEeCCeEEEEEcccceEEEEceEEEEEEccCceeecccee
Q 032270 34 INLPKGLL-PLNDLVEVGYNRATGFVWLKQKKRTEHKFRSIGRNVSYDTEVTGFVEDRRMRRLTGVK 99 (144)
Q Consensus 34 ~glP~GLL-Pl~~V~~y~l~~~tG~~~v~l~~~c~~~F~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk 99 (144)
.|||-|.= |+..+++ .+-+.--.|.|.++. |.++.+ ++...-+|+|++.+-..-+.-++.
T Consensus 15 l~~~~~~p~p~~~~~~-~~~a~~~~ftV~~n~---C~ie~G--klf~~G~I~GN~t~~~fv~~~v~~ 75 (187)
T PF05963_consen 15 LGLTDGFPRPVPEITE-QLTARRAHFTVEQNR---CYIEGG--KLFMTGRISGNFTKSHFVQVGVVG 75 (187)
T ss_dssp -------------------------EEEEEEE---EEESSS--EEEEEEEEEE--S-EEEEESSS-E
T ss_pred cccccCCCCchHHHHh-hhccCCceEEEEeee---EEEECC--EEEEEEEEeeeeeeEEEEEEeeee
Confidence 45555553 6656777 442212348887543 677754 888889999999865555555544
No 6
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=39.17 E-value=28 Score=31.09 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=24.8
Q ss_pred CCcEEEeccccchhhHH---HHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQKSH---ELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~ta~---elL~~~glP~GLLP 42 (144)
-++.|...++.+..++. ++|++.|||.|++=
T Consensus 162 GN~VvlKPs~~tp~t~~~l~~l~~~aGlP~gvv~ 195 (487)
T PRK09457 162 GNTVVFKPSELTPWVAELTVKLWQQAGLPAGVLN 195 (487)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCcCcCeEE
Confidence 45678888888766665 78999999999876
No 7
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=36.90 E-value=56 Score=25.46 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=34.7
Q ss_pred hhcCCcEEEeccccc--hhhHHHHHHhCCCCCCCcCC-CCceEEEEEccCcEEEEEeCCeEEE
Q 032270 9 NNQEGAEIYHGESIC--KQKSHELLAEINLPKGLLPL-NDLVEVGYNRATGFVWLKQKKRTEH 68 (144)
Q Consensus 9 ~~~~~aev~~g~~~~--~~ta~elL~~~glP~GLLPl-~~V~~y~l~~~tG~~~v~l~~~c~~ 68 (144)
+.|....|.-..+.= .+.|.++..+. +|- .+|++.-||.+||.|+++..+|.-+
T Consensus 34 ~lrKRIvvR~dps~l~~~e~A~~~I~~i------vP~ea~i~di~Fd~~tGEV~IeaeKPG~V 90 (145)
T cd02410 34 DLRKRIVIRPDPSVLKPPEEAIKIILEI------VPEEAGITDIYFDDDTGEVIIEAEKPGLV 90 (145)
T ss_pred HHhceEEEcCChhhcCCHHHHHHHHHHh------CCCccCceeeEecCCCcEEEEEEcCCeEE
Confidence 345554444332221 24666776663 442 3689999999999999999887543
No 8
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=33.18 E-value=1.1e+02 Score=22.18 Aligned_cols=36 Identities=39% Similarity=0.622 Sum_probs=23.6
Q ss_pred hhHHHHHHhCCCCC------CCcCCCCceEEEEEccCcEEEEEeCC
Q 032270 25 QKSHELLAEINLPK------GLLPLNDLVEVGYNRATGFVWLKQKK 64 (144)
Q Consensus 25 ~ta~elL~~~glP~------GLLPl~~V~~y~l~~~tG~~~v~l~~ 64 (144)
..|.++|+++|+|. |--+ ..-.|+..||.+||+.-+
T Consensus 67 ~~a~~~L~~~gi~I~a~dvGG~~~----R~v~f~~~tG~v~vk~~~ 108 (114)
T PF03975_consen 67 EAARELLAEEGIPIVAEDVGGNFG----RKVRFDPATGEVWVKRIG 108 (114)
T ss_dssp HHHHHHHHHTT--EEEEEE-SSS-----EEEEEETTTTEEEEE---
T ss_pred HHHHHHHHHCCCcEEEeeCCCCCC----cEEEEEcCCCEEEEEECC
Confidence 46889999999994 4444 246688899999998643
No 9
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=32.66 E-value=33 Score=31.69 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=24.9
Q ss_pred CCcEEEeccccchhhH-------HHHHHhCCCCCCCcCC
Q 032270 12 EGAEIYHGESICKQKS-------HELLAEINLPKGLLPL 43 (144)
Q Consensus 12 ~~aev~~g~~~~~~ta-------~elL~~~glP~GLLPl 43 (144)
-++.|.+.++.+.-++ .++|++.|||.|++-+
T Consensus 221 GN~VVlKPs~~tpl~~~~~~~~l~e~l~eAGlP~gvv~l 259 (551)
T TIGR02288 221 GNPVLVKPHPGAILPLALTVQVAREVLGEAGFDPNLVTL 259 (551)
T ss_pred CCeEEEECCcccchhHHHHHHHHHHHHHHcCcChhHEEE
Confidence 3577888888776543 3999999999998863
No 10
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=31.88 E-value=47 Score=29.00 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=25.2
Q ss_pred cCC-cEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 11 QEG-AEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 11 ~~~-aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
.+| +.|...++.+..+ ..++|+++|||.|++-
T Consensus 149 aaGN~VIlKps~~~p~~~~~l~~~l~~ag~P~g~v~ 184 (452)
T cd07147 149 AAGCPFVLKPASRTPLSALILGEVLAETGLPKGAFS 184 (452)
T ss_pred HcCCEEEEECCCCCcHHHHHHHHHHHHcCCCcCcEE
Confidence 344 7888888886554 5788999999999875
No 11
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=31.03 E-value=43 Score=29.76 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=23.5
Q ss_pred CCcEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
-++.|..+++.+..+ ..++|++.|||.|++=
T Consensus 163 GN~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~ 196 (488)
T TIGR02299 163 GNTVVLKPAEWSPLTAARLAEIAKEAGLPDGVFN 196 (488)
T ss_pred CCEEEEECchhchHHHHHHHHHHHHcCcChhhee
Confidence 356778888765444 4788999999999875
No 12
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=30.36 E-value=51 Score=29.23 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCcEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
-++.|...++.+..+ ..++|++.|||.|++=
T Consensus 170 GN~VvlKPs~~tp~~~~~l~~~~~~aglP~gvv~ 203 (477)
T cd07113 170 GCTIVIKPSEFTPLTLLRVAELAKEAGIPDGVLN 203 (477)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHcCcCCCcEE
Confidence 456778887765544 4778999999999875
No 13
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=30.32 E-value=51 Score=28.87 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=23.8
Q ss_pred CCcEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
-++.|...++.+..+ ..+++++.|||.|++-
T Consensus 148 GN~VV~Kps~~~p~~~~~l~~~~~~aGlP~gvv~ 181 (456)
T cd07110 148 GCTVVLKPSELTSLTELELAEIAAEAGLPPGVLN 181 (456)
T ss_pred CCEEEEECcccchHHHHHHHHHHHHcCCCCCcEE
Confidence 456788888776554 5678999999999875
No 14
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=30.28 E-value=43 Score=22.62 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=12.9
Q ss_pred ceEEEEEEccCceeeccc
Q 032270 80 DTEVTGFVEDRRMRRLTG 97 (144)
Q Consensus 80 ~~~ItG~i~~g~i~~L~G 97 (144)
...|+|.|+.|+|+ +.|
T Consensus 27 Ga~ItGhVknG~mr-i~g 43 (62)
T PF08300_consen 27 GAVITGHVKNGSMR-IYG 43 (62)
T ss_dssp S-EEEEEEETTEEE-EE-
T ss_pred CCEEeEEEeCCeEE-Eec
Confidence 47899999999998 544
No 15
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=30.23 E-value=51 Score=28.45 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=23.9
Q ss_pred CCcEEEeccccchh----hHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQ----KSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~----ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+.. ...++|.+.|||.|++-
T Consensus 126 GN~Vi~Kps~~~p~~~~~~l~~~l~~aGlP~gvv~ 160 (431)
T cd07104 126 GNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVLN 160 (431)
T ss_pred CCeEEeeCCCCChHHHHHHHHHHHHHcCCCcccEE
Confidence 34678888877543 36889999999999876
No 16
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=29.65 E-value=45 Score=20.85 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.8
Q ss_pred hhhHHHHHHhCCCCCC
Q 032270 24 KQKSHELLAEINLPKG 39 (144)
Q Consensus 24 ~~ta~elL~~~glP~G 39 (144)
..-..+.|.+||+|.|
T Consensus 8 d~eL~~~L~~~G~~~g 23 (44)
T smart00540 8 DAELRAELKQYGLPPG 23 (44)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3456778999999997
No 17
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=29.62 E-value=54 Score=29.09 Aligned_cols=31 Identities=6% Similarity=0.166 Sum_probs=23.9
Q ss_pred CCcEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
-++.|...++.+..+ ..++|++.|||.|++-
T Consensus 154 GN~vv~KPs~~tp~~~~~l~~~~~~aGlP~gv~~ 187 (462)
T PRK13968 154 GNGYLLKHAPNVMGCAQLIAQVFKDAGIPQGVYG 187 (462)
T ss_pred CCEEEEECCCcChHHHHHHHHHHHHcCcCcCcEE
Confidence 356778888876554 4678999999999976
No 18
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=28.58 E-value=55 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCcEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
-++.|....+.+..+ ..++|++.|||.|++-
T Consensus 151 GN~VV~Kps~~~p~~~~~l~~l~~~aGlP~gvv~ 184 (457)
T PRK09406 151 GNVGLLKHASNVPQTALYLADLFRRAGFPDGCFQ 184 (457)
T ss_pred CCEEEEECCCcCcHHHHHHHHHHHHhCCCcCcEE
Confidence 346777887765544 5778999999999976
No 19
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=28.43 E-value=56 Score=28.72 Aligned_cols=30 Identities=20% Similarity=0.069 Sum_probs=22.3
Q ss_pred CcEEEeccccchhhHH-------HHHHhCCCCCCCcC
Q 032270 13 GAEIYHGESICKQKSH-------ELLAEINLPKGLLP 42 (144)
Q Consensus 13 ~aev~~g~~~~~~ta~-------elL~~~glP~GLLP 42 (144)
++.|...++.+..+++ ++|++.|||.|++=
T Consensus 149 N~VIlKps~~~p~~~~~~~~~~~~~l~~aGlP~gvv~ 185 (465)
T cd07098 149 NAIVVKVSEQVAWSSGFFLSIIRECLAACGHDPDLVQ 185 (465)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 4677788887765554 55689999999764
No 20
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=28.10 E-value=1.1e+02 Score=23.77 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=27.2
Q ss_pred hhHHHHHHhCCCCC------CCcCCCCceEEEEEccCcEEEEEeCC
Q 032270 25 QKSHELLAEINLPK------GLLPLNDLVEVGYNRATGFVWLKQKK 64 (144)
Q Consensus 25 ~ta~elL~~~glP~------GLLPl~~V~~y~l~~~tG~~~v~l~~ 64 (144)
+.|.++|+++|+|. |--+ . .-.|+.+||.+|++.-.
T Consensus 110 ~~a~~~L~~~gi~i~a~dvGG~~g-R---~i~f~~~tG~v~vk~~~ 151 (157)
T PRK13488 110 ESAKETLKKLGIRIVAEDVGGDYG-R---TVKFDLKTGKVIVRKAN 151 (157)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCC-c---EEEEECCCCEEEEEEcC
Confidence 46889999999995 4444 3 45688899999997533
No 21
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=27.58 E-value=59 Score=28.36 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCcEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
-++.|...++.+..+ ..++|++.|||.|++-
T Consensus 147 GN~VilKps~~~p~t~~~l~~~~~~ag~P~g~v~ 180 (451)
T cd07150 147 GNTVVLKPSEETPVIGLKIAEIMEEAGLPKGVFN 180 (451)
T ss_pred CCeEEEECCccCcHHHHHHHHHHHHhCCCcCcEE
Confidence 356677777766544 4688999999999875
No 22
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=27.48 E-value=53 Score=30.27 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=24.0
Q ss_pred CCcEEEeccccchhhH-------HHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQKS-------HELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~ta-------~elL~~~glP~GLLP 42 (144)
-++.|.+.++.+.-++ .++|++.|||.|++-
T Consensus 221 GN~VVvKPs~~a~ls~~~~~~~i~~~l~eAGlP~gvv~ 258 (549)
T cd07127 221 GNPVIVKPHPAAILPLAITVQVAREVLAEAGFDPNLVT 258 (549)
T ss_pred CCeEEEECCcccchhHHHHHHHHHHHHHHcCcCcccEE
Confidence 3567788888776543 389999999999886
No 23
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=26.85 E-value=51 Score=28.88 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCcEEEeccccchhhHHHH-------HHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQKSHEL-------LAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~ta~el-------L~~~glP~GLLP 42 (144)
-++.|+..++.+..++..+ |++.|||.|++=
T Consensus 141 GN~vVlKPs~~tp~t~~~l~~l~~~~l~~aGlP~gv~~ 178 (417)
T PRK00197 141 GNAVILRGGSEAIHSNRALVAVIQEALEEAGLPADAVQ 178 (417)
T ss_pred CCeEEEecChhhhHHHHHHHHHHHHHHHHcCcChhhEE
Confidence 3567888888877766543 678899999986
No 24
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=26.62 E-value=66 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=23.6
Q ss_pred CCcEEEeccccc---hhhHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESIC---KQKSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~---~~ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+ .....+++++.|||.|++=
T Consensus 99 GN~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~ 132 (409)
T PRK10090 99 GNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFN 132 (409)
T ss_pred CCEEEEECCCcChHHHHHHHHHHHHcCCCcccEE
Confidence 456777887765 4455789999999999885
No 25
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=25.59 E-value=70 Score=28.23 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCcEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQ---KSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~---ta~elL~~~glP~GLLP 42 (144)
-++.|..+++.+.. ...++|.+.|||.|++=
T Consensus 163 GN~VvlKps~~~p~~~~~l~~~l~~aGlP~gvv~ 196 (478)
T cd07131 163 GNTVVFKPAEDTPACALKLVELFAEAGLPPGVVN 196 (478)
T ss_pred CCEEEEECCCcCcHHHHHHHHHHHhcCcCCCcEE
Confidence 34577888776544 45688999999999875
No 26
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=25.55 E-value=68 Score=28.97 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=23.7
Q ss_pred CCcEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
-++.|...++.+..+ ..++|++.|||.|++=
T Consensus 182 GN~VIlKPs~~tp~~~~~l~~ll~eaGlP~gvv~ 215 (524)
T PRK09407 182 GNAVVLKPDSQTPLTALAAVELLYEAGLPRDLWQ 215 (524)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCcccEE
Confidence 346788888776554 4789999999999874
No 27
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=25.32 E-value=1.1e+02 Score=21.71 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=22.0
Q ss_pred EEEceEEEEEEccCceeeccceeEEE---------EEeeeeeeEEEEcCCCCCeEEEEeC
Q 032270 77 VSYDTEVTGFVEDRRMRRLTGVKSKE---------LLIWVSISDIYTDAPDSKKITFANS 127 (144)
Q Consensus 77 v~Y~~~ItG~i~~g~i~~L~GVkvK~---------lf~Wv~I~eI~vd~~~~~~i~F~~g 127 (144)
+-|+..|.. ..=+|.. .||+.+. ||+++.|++.. .+.+.|...
T Consensus 19 mvyG~nI~~--~~v~i~~-~gV~i~~v~~~~npNYLFv~L~i~~ak-----pg~~~i~~~ 70 (88)
T PF09087_consen 19 MVYGKNIAS--AEVSISY-PGVTIKKVVKTDNPNYLFVYLDISDAK-----PGTFTINFK 70 (88)
T ss_dssp EEESTTGGG--SEEEE-B-TTEEEEEEEE-SSTTEEEEEEEE-T-------SEEEEEEEE
T ss_pred EEecCCccc--CEEEEeC-CCeEEEEEEecCCCCEEEEEEecCCCC-----CcEEEEEEE
Confidence 345554443 1223333 6777665 89999998443 455554443
No 28
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=25.01 E-value=71 Score=28.15 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCcEEEeccccchh----hHHHHHHhCCCCCCCcCC
Q 032270 12 EGAEIYHGESICKQ----KSHELLAEINLPKGLLPL 43 (144)
Q Consensus 12 ~~aev~~g~~~~~~----ta~elL~~~glP~GLLPl 43 (144)
-++.|...++.+.. ...++|++.|||.|++-+
T Consensus 158 GN~Vi~Kps~~~p~~~~~~l~~~l~~aG~P~gvv~~ 193 (465)
T cd07151 158 GNAVVLKPASDTPITGGLLLAKIFEEAGLPKGVLNV 193 (465)
T ss_pred CCEEEEECCCCCcHhHHHHHHHHHHHcCcCccceEE
Confidence 45678888876543 457899999999998863
No 29
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.77 E-value=42 Score=25.01 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=14.8
Q ss_pred CCCCCcCCCCceEEEEEccCcE
Q 032270 36 LPKGLLPLNDLVEVGYNRATGF 57 (144)
Q Consensus 36 lP~GLLPl~~V~~y~l~~~tG~ 57 (144)
=|+|+|||.|+.-=.. ++|+
T Consensus 41 E~kyilpLdnLk~Rdv--e~gf 60 (110)
T cd01256 41 EKKYMLPLDGLKLRDI--EGGF 60 (110)
T ss_pred cccceeeccccEEEee--cccc
Confidence 3899999998776555 3664
No 30
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=24.76 E-value=71 Score=28.82 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=24.4
Q ss_pred CCcEEEeccccchhhHH-------HHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQKSH-------ELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~ta~-------elL~~~glP~GLLP 42 (144)
-++.|..+++.+..++. ++|++.|||.|++=
T Consensus 132 GNaVIlKps~~a~~s~~~~~~~l~~~l~eaGlP~gvv~ 169 (488)
T TIGR02518 132 RNAIVFSPHPNAKKCIIETVKLMRKAAEEAGAPEGAIG 169 (488)
T ss_pred CCcEEEECCccchHHHHHHHHHHHHHHHHcCcCcccEE
Confidence 46889999988776554 44689999999985
No 31
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=24.36 E-value=66 Score=28.18 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=22.7
Q ss_pred CcEEEeccccc---hhhHHHHHHhCCCCCCCcC
Q 032270 13 GAEIYHGESIC---KQKSHELLAEINLPKGLLP 42 (144)
Q Consensus 13 ~aev~~g~~~~---~~ta~elL~~~glP~GLLP 42 (144)
++.|..+++.+ .....++|.+.|||.|++=
T Consensus 145 N~Vv~Kps~~~~~~~~~l~~~~~~aGlP~g~~~ 177 (457)
T cd07090 145 NAMVYKPSPFTPLTALLLAEILTEAGLPDGVFN 177 (457)
T ss_pred CeeeecCCCcCcHHHHHHHHHHHHcCCCcccEE
Confidence 45777777664 4456889999999999864
No 32
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=24.22 E-value=75 Score=28.10 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCcEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQ---KSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~---ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+.. ...++|.+.|||.|++=
T Consensus 162 GN~VilKps~~~p~~~~~l~~~~~~aGlP~gv~~ 195 (482)
T cd07119 162 GNTVVIKPSEVTPLTTIALFELIEEAGLPAGVVN 195 (482)
T ss_pred CCEEEEECCccccHHHHHHHHHHHHcCCCcCcEE
Confidence 45678888776544 56789999999999875
No 33
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=24.04 E-value=38 Score=21.56 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=19.1
Q ss_pred EEEEceEEE-EEEccCceeeccceeEE
Q 032270 76 NVSYDTEVT-GFVEDRRMRRLTGVKSK 101 (144)
Q Consensus 76 ~v~Y~~~It-G~i~~g~i~~L~GVkvK 101 (144)
++.|-+.+. |.|++-+-++|+||+++
T Consensus 20 QaN~iRDvqGGtVaPSSss~lTGv~~q 46 (46)
T PF02402_consen 20 QANYIRDVQGGTVAPSSSSELTGVAVQ 46 (46)
T ss_pred hhcceecCCCceECCCccceeeeeecC
Confidence 444545544 59999999999999863
No 34
>KOG2455 consensus Delta-1-pyrroline-5-carboxylate dehydrogenase [Amino acid transport and metabolism]
Probab=23.79 E-value=47 Score=30.76 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.2
Q ss_pred hHHHHHHhCCCCCCCc
Q 032270 26 KSHELLAEINLPKGLL 41 (144)
Q Consensus 26 ta~elL~~~glP~GLL 41 (144)
-+|++|+|-|||.|++
T Consensus 241 ii~~il~EAGlP~Gvi 256 (561)
T KOG2455|consen 241 IIYRILREAGLPPGVI 256 (561)
T ss_pred HHHHHHHHcCCCccce
Confidence 4678999999999987
No 35
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=23.64 E-value=80 Score=28.01 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=23.5
Q ss_pred CCcEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQ---KSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~---ta~elL~~~glP~GLLP 42 (144)
-++.|..+++.+.. ...++|.+.|||.|++=
T Consensus 167 GN~vvlKPs~~tp~t~~~l~~l~~~aglP~g~~~ 200 (481)
T TIGR03216 167 GNTVVVKPSEETPGTATLLGEVMNAVGVPKGVYN 200 (481)
T ss_pred CCEEEEECCccchHHHHHHHHHHHHcCCCcCceE
Confidence 34667778776544 45789999999999886
No 36
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=23.63 E-value=77 Score=27.67 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=23.5
Q ss_pred CCcEEEeccccchhh----HHHHHHhCCCCCCCcCC
Q 032270 12 EGAEIYHGESICKQK----SHELLAEINLPKGLLPL 43 (144)
Q Consensus 12 ~~aev~~g~~~~~~t----a~elL~~~glP~GLLPl 43 (144)
-++.|+..++.+..+ ..++|++.|||.|++-+
T Consensus 138 GN~VvlKps~~~p~~~~~~l~~~~~~ag~P~gvv~~ 173 (443)
T cd07152 138 GNAVVLKPDPRTPVSGGVVIARLFEEAGLPAGVLHV 173 (443)
T ss_pred CCEEEEECCcccchhHHHHHHHHHHHhCcCcCcEEE
Confidence 345777877765443 35899999999999863
No 37
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=23.62 E-value=76 Score=28.71 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCcEEEeccccchhh-------HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK-------SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t-------a~elL~~~glP~GLLP 42 (144)
-++.|...++.+..+ ..++|++.|||.|++=
T Consensus 182 GN~VVlKPs~~tp~~~~~~~~l~~~~~~~aGlP~gvv~ 219 (508)
T PLN02315 182 GNCVVWKGAPTTPLITIAMTKLVAEVLEKNNLPGAIFT 219 (508)
T ss_pred CCEEEeeCCCcChHHHHHHHHHHHHHHHHcCCCcccEE
Confidence 456788888876554 4677899999999985
No 38
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.58 E-value=1.7e+02 Score=23.41 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=33.8
Q ss_pred CcEEEeccccc----------hhhHHHHHHhCCCCC------CCcCCCCceEEEEEccCcEEEEEeC
Q 032270 13 GAEIYHGESIC----------KQKSHELLAEINLPK------GLLPLNDLVEVGYNRATGFVWLKQK 63 (144)
Q Consensus 13 ~aev~~g~~~~----------~~ta~elL~~~glP~------GLLPl~~V~~y~l~~~tG~~~v~l~ 63 (144)
-|-|+-|+..- .+.|.++|+++|+|. |--+ . .-.|+.+||.+|++.=
T Consensus 93 ~aKifGGA~m~~~~~~IG~rNi~~a~~~L~~~gI~i~a~DvGG~~g-R---~v~f~~~tG~v~~k~~ 155 (184)
T PRK13497 93 EAKIFGGAKTIATFSNVGEQNAAFAMQFLRDEGIPVVGSSTGGEHG-R---KLEYWPVSGRARQYPL 155 (184)
T ss_pred EEEEEeCchhccccccHHHHHHHHHHHHHHHcCCcEEEEeCCCCCC-c---EEEEECCCCeEEEEEc
Confidence 35566666533 247899999999994 6655 3 3567889999999853
No 39
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=23.51 E-value=81 Score=27.68 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=22.8
Q ss_pred CCcEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQ---KSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~---ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+.. ...++|++.|||.|++=
T Consensus 161 GN~VVlKps~~~p~~~~~l~~~~~~aglP~gvv~ 194 (468)
T cd07088 161 GNTIVIKPSEETPLNALEFAELVDEAGLPAGVLN 194 (468)
T ss_pred CCEEEEECCCcchHHHHHHHHHHHHcCcCccceE
Confidence 34567777765544 55789999999999864
No 40
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=23.06 E-value=2.5e+02 Score=19.02 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=37.8
Q ss_pred eEEEEceEEEEEEccCceeecc-------------ceeEEEEEeeeeeeEEEEcCCCCCeEEEEeC
Q 032270 75 RNVSYDTEVTGFVEDRRMRRLT-------------GVKSKELLIWVSISDIYTDAPDSKKITFANS 127 (144)
Q Consensus 75 ~~v~Y~~~ItG~i~~g~i~~L~-------------GVkvK~lf~Wv~I~eI~vd~~~~~~i~F~~g 127 (144)
-.+.|-+-.+|.++.|.--... -.+++.++....-..+.++....++|..=.|
T Consensus 16 g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g 81 (93)
T cd03700 16 GFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIVG 81 (93)
T ss_pred EEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEEC
Confidence 4677888888888888543222 2677788888888888888766777776443
No 41
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=23.05 E-value=48 Score=20.41 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.5
Q ss_pred ccchhhHHHHHHhCCCC
Q 032270 21 SICKQKSHELLAEINLP 37 (144)
Q Consensus 21 ~~~~~ta~elL~~~glP 37 (144)
+.+..+|.+|+.+||+-
T Consensus 25 ~~A~~kAq~Lm~ky~i~ 41 (43)
T PF10979_consen 25 EAALAKAQRLMAKYGID 41 (43)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 45788999999999974
No 42
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=22.97 E-value=86 Score=27.34 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=22.6
Q ss_pred CCcEEEeccccch---hhHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICK---QKSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~---~ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+. ....++|++.|||.|++=
T Consensus 144 GN~VVlKps~~~~~~~~~l~~~l~~aGlP~g~~~ 177 (452)
T cd07102 144 GNAVILKHSPQTPLCGERFAAAFAEAGLPEGVFQ 177 (452)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHhcCCCcCcEE
Confidence 3456777666543 456789999999999864
No 43
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=22.85 E-value=86 Score=27.51 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCcEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQ---KSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~---ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+.. ...++|.+.|||.|++=
T Consensus 146 GN~vvlKps~~~p~~~~~l~~~~~~aglP~gv~~ 179 (454)
T cd07101 146 GNAVVLKPDSQTALTALWAVELLIEAGLPRDLWQ 179 (454)
T ss_pred CCEEEEECCccchHHHHHHHHHHHHcCcCCCcEE
Confidence 35577787776654 45678999999999874
No 44
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=22.32 E-value=89 Score=27.21 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCcEEEecccc---chhhHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESI---CKQKSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~---~~~ta~elL~~~glP~GLLP 42 (144)
-++.|...++. |.....++|.+.|||.|++-
T Consensus 126 GN~VVlKps~~~p~~~~~l~~~~~~aGlP~gv~~ 159 (432)
T cd07105 126 GNTVVLKASELSPRTHWLIGRVFHEAGLPKGVLN 159 (432)
T ss_pred CCEEEEECCccChHHHHHHHHHHHHcCcCCCcEE
Confidence 34566676665 44456788999999999875
No 45
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=22.27 E-value=86 Score=27.80 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=23.7
Q ss_pred CCcEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQ---KSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~---ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+.. ...++|++.|||.|++=
T Consensus 172 GN~VV~Kps~~~p~~~~~l~~~~~~aglP~gv~~ 205 (484)
T cd07144 172 GNTVVIKPAENTPLSLLYFANLVKEAGFPPGVVN 205 (484)
T ss_pred CCEEEEECCccchHHHHHHHHHHHHhCcCCCcEE
Confidence 45677888876544 45789999999999885
No 46
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=22.20 E-value=88 Score=27.64 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=23.3
Q ss_pred CCcEEEeccccch---hhHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICK---QKSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~---~ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+. ....++|.+.|||.|++=
T Consensus 169 GN~VvlKps~~~p~~~~~l~~~~~~aglP~g~~~ 202 (476)
T cd07091 169 GNTVVLKPAEQTPLSALYLAELIKEAGFPPGVVN 202 (476)
T ss_pred CCEEEEeCCCCChHHHHHHHHHHHHcCcCCCcEE
Confidence 3466778777654 456789999999999874
No 47
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=22.11 E-value=89 Score=27.28 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=23.3
Q ss_pred CCcEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 032270 12 EGAEIYHGESICK---QKSHELLAEINLPKGLLPL 43 (144)
Q Consensus 12 ~~aev~~g~~~~~---~ta~elL~~~glP~GLLPl 43 (144)
-++.|...++.+. ....++|++.|||.|++-+
T Consensus 145 GN~VIlkps~~~p~~~~~l~~~l~~aglP~g~v~~ 179 (455)
T cd07093 145 GNTVVLKPSEWTPLTAWLLAELANEAGLPPGVVNV 179 (455)
T ss_pred CCEEEeECCCcCcHHHHHHHHHHHhcCCCccceEE
Confidence 3456777775544 4577899999999998863
No 48
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=21.92 E-value=82 Score=27.56 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCcEEEeccccch---hhHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICK---QKSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~---~ta~elL~~~glP~GLLP 42 (144)
-++.|+.+++.+. ....++|++.|||.|++-
T Consensus 145 GN~Vi~Kps~~~p~~~~~l~~~~~~aGlP~~~~~ 178 (453)
T cd07115 145 GNTVVLKPAELTPLSALRIAELMAEAGFPAGVLN 178 (453)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHhcCcCchheE
Confidence 3567888877644 456789999999999876
No 49
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=21.89 E-value=87 Score=28.05 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCcEEEeccccchhhH---HHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQKS---HELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~ta---~elL~~~glP~GLLP 42 (144)
-++.|....+.+..++ .++|.+.|||.|++=
T Consensus 175 GN~VVlKPs~~tp~~~~~l~~~~~~aglP~gv~~ 208 (486)
T cd07140 175 GNTVVLKPAQVTPLTALKFAELTVKAGFPKGVIN 208 (486)
T ss_pred CCEEEEECCccCcHHHHHHHHHHHHcCcCCCcEE
Confidence 3567788887765554 677889999999886
No 50
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=21.84 E-value=91 Score=27.30 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=23.5
Q ss_pred CCcEEEeccccch---hhHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICK---QKSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~---~ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+. ....++|++.|||.|++=
T Consensus 145 GN~VvlKps~~~p~~~~~l~~~~~~aGlP~gv~~ 178 (454)
T cd07109 145 GNAVVVKPAEDAPLTALRLAELAEEAGLPAGALN 178 (454)
T ss_pred CCEEEEECCCCChHHHHHHHHHHHHcCcCccceE
Confidence 3567777777654 456789999999999985
No 51
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=21.40 E-value=91 Score=27.63 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=23.7
Q ss_pred CCcEEEeccccc---hhhHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESIC---KQKSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~---~~ta~elL~~~glP~GLLP 42 (144)
-++.|...++.+ .....++|++.|||.|++-
T Consensus 169 GN~VV~KPs~~tp~~~~~l~~~~~~aGlP~gvv~ 202 (476)
T cd07142 169 GNTIVLKPAEQTPLSALLAAKLAAEAGLPDGVLN 202 (476)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHHcCcCcccEE
Confidence 456777777764 4456788999999999986
No 52
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=21.26 E-value=87 Score=27.86 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCcEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
-++.|..+++.+..+ ..++|++.|||.|++=
T Consensus 160 GN~VVlKPs~~tp~t~~~l~~~~~~aGlP~gvv~ 193 (484)
T TIGR03240 160 GNTVVFKPSELTPWVAEETVKLWEKAGLPAGVLN 193 (484)
T ss_pred CCEEEEECCccccHHHHHHHHHHHHhCcCcccEE
Confidence 345788888866544 4567899999999863
No 53
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=21.12 E-value=92 Score=27.86 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCcEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQ---KSHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~---ta~elL~~~glP~GLLP 42 (144)
-++.|..+++.+.. ...++|++.|||.|++=
T Consensus 175 GN~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~ 208 (480)
T cd07111 175 GNTVVLKPAEYTPLTALLFAEICAEAGLPPGVLN 208 (480)
T ss_pred CCEEEEECCCCChHHHHHHHHHHHhcCCCcccEE
Confidence 45678888876544 45779999999999874
No 54
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=21.07 E-value=2.1e+02 Score=22.43 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=27.3
Q ss_pred hhHHHHHHhCCCCC------CCcCCCCceEEEEEccCcEEEEEeCC
Q 032270 25 QKSHELLAEINLPK------GLLPLNDLVEVGYNRATGFVWLKQKK 64 (144)
Q Consensus 25 ~ta~elL~~~glP~------GLLPl~~V~~y~l~~~tG~~~v~l~~ 64 (144)
+.|.++|+++|+|. |--+ . .-.|+.+||.+||+.-.
T Consensus 118 ~~a~~~L~~~gi~i~a~DvGG~~g-R---~i~f~~~tG~v~vk~~~ 159 (167)
T PRK13498 118 HAALALAEQNGLHLKAQDLGSTGH-R---SIIFDLWNGNVWVRHQP 159 (167)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCC-c---EEEEECCCCEEEEEECC
Confidence 46889999999994 4445 3 35678899999998643
No 55
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.94 E-value=2e+02 Score=23.54 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=28.7
Q ss_pred hhHHHHHHhCCCCC------CCcCCCCceEEEEEccCcEEEEEeCC
Q 032270 25 QKSHELLAEINLPK------GLLPLNDLVEVGYNRATGFVWLKQKK 64 (144)
Q Consensus 25 ~ta~elL~~~glP~------GLLPl~~V~~y~l~~~tG~~~v~l~~ 64 (144)
+.|.++|+++|+|. |-.+ .. --|+.+||.+||+.-.
T Consensus 142 ~~a~~~L~~~gI~Iva~DvGG~~g-Rk---i~f~~~tG~v~vk~~~ 183 (213)
T PRK13493 142 EFVLEYAKREKLNVVAQDLGGAQP-RK---LLFDPQTGQAWVKRIG 183 (213)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCC-cE---EEEECCCCEEEEEEcC
Confidence 47899999999994 6666 43 4677899999998654
No 56
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=20.87 E-value=99 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=23.2
Q ss_pred CcEEEeccccc---hhhHHHHHHhCCCCCCCcC
Q 032270 13 GAEIYHGESIC---KQKSHELLAEINLPKGLLP 42 (144)
Q Consensus 13 ~aev~~g~~~~---~~ta~elL~~~glP~GLLP 42 (144)
.+.|...++.+ .....++|++.|||.|++=
T Consensus 149 N~VilKps~~~p~~~~~l~~~l~~aglP~g~v~ 181 (451)
T cd07146 149 NRIVLKPSEKTPLSAIYLADLLYEAGLPPDMLS 181 (451)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHcCcCccceE
Confidence 45777777765 4457788999999999886
No 57
>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation. The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.
Probab=20.81 E-value=2.4e+02 Score=17.89 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=20.3
Q ss_pred hHHHHHHhCCCCCCCcCCCCceEEEEEccCcEEEE
Q 032270 26 KSHELLAEINLPKGLLPLNDLVEVGYNRATGFVWL 60 (144)
Q Consensus 26 ta~elL~~~glP~GLLPl~~V~~y~l~~~tG~~~v 60 (144)
++..+|+++|+ =|+.+|++..+-.++|.+.+
T Consensus 3 k~~~~l~klgl----~~i~~i~eV~i~~~dg~~~~ 33 (58)
T PF01849_consen 3 KLQKMLKKLGL----KEIPGIEEVTIRKDDGTVFV 33 (58)
T ss_dssp -----GHHCT-----EEETTEEEEEEEETTTEEEE
T ss_pred HHHHHHHHcCC----cccCCcEEEEEEECCceEEE
Confidence 45678888887 77779999999888877544
No 58
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=20.49 E-value=98 Score=26.92 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=23.5
Q ss_pred CcEEEeccccc---hhhHHHHHHhCCCCCCCcC
Q 032270 13 GAEIYHGESIC---KQKSHELLAEINLPKGLLP 42 (144)
Q Consensus 13 ~aev~~g~~~~---~~ta~elL~~~glP~GLLP 42 (144)
++.|...++.+ .....++|++.|||.|++-
T Consensus 146 N~VIlKps~~~~~~~~~l~~~l~~aglP~g~v~ 178 (451)
T cd07103 146 CTVVLKPAEETPLSALALAELAEEAGLPAGVLN 178 (451)
T ss_pred CEEEEECCccCcHHHHHHHHHHHHcCCCcccEE
Confidence 37788877664 4567899999999999875
No 59
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=20.42 E-value=1e+02 Score=27.02 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCcEEEeccccchhh---HHHHHHhCCCCCCCcC
Q 032270 12 EGAEIYHGESICKQK---SHELLAEINLPKGLLP 42 (144)
Q Consensus 12 ~~aev~~g~~~~~~t---a~elL~~~glP~GLLP 42 (144)
-++.|...++.+..+ ..++|++.|||.|++=
T Consensus 151 GN~VV~Kps~~~p~~~~~l~~~~~~ag~p~g~~~ 184 (456)
T cd07145 151 GNSVVVKPSSNTPLTAIELAKILEEAGLPPGVIN 184 (456)
T ss_pred CCEEEEECCccchHHHHHHHHHHHHcCCCcccEE
Confidence 356788888876554 5788999999999975
No 60
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=20.09 E-value=2.7e+02 Score=24.74 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=27.1
Q ss_pred CCCceEEEEEccCcEEEEEe------CCeEEEEEcccceEEE
Q 032270 43 LNDLVEVGYNRATGFVWLKQ------KKRTEHKFRSIGRNVS 78 (144)
Q Consensus 43 l~~V~~y~l~~~tG~~~v~l------~~~c~~~F~~~~~~v~ 78 (144)
..+|.+|.+|.++|.+++-= +.+|++.++..+..|.
T Consensus 63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf 104 (346)
T COG2706 63 EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVF 104 (346)
T ss_pred cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEE
Confidence 57899999999899987642 3459999987665543
Done!