BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032271
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YNM|D Chain D, Structure Of The Adpxalf3-stabilized Transition State Of
           The Nitrogenase-like Dark-operative Protochlorophyllide
           Oxidoreductase Complex From Prochlorococcus Marinus With
           Its Substrate Protochlorophyllide A
          Length = 530

 Score = 28.5 bits (62), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 15  VNVQVYVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKR 74
           +N+ +    +PA S KE       FY +I    R L  E SE   N+ +    E   R R
Sbjct: 113 LNIPIVSLELPAYSKKENWGASETFYQLI----RGLLKEISEDSSNNAKQSWQEEGRRPR 168

Query: 75  V 75
           V
Sbjct: 169 V 169


>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
 pdb|3EDV|B Chain B, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
          Length = 323

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 88  RNDECGICMENCTKMVTRKHFSLERIPDKYFS 119
           RND    C+E    ++ RKH++ E I +K   
Sbjct: 271 RNDSFTTCIELGKSLLARKHYASEEIKEKLLQ 302


>pdb|3CE2|A Chain A, Crystal Structure Of Putative Peptidase From Chlamydophila
           Abortus
          Length = 618

 Score = 26.9 bits (58), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 25  PALSSKERKATLREFYAIIYPSLRQLESEF 54
           P   SKE+K T +E   +IY SL  L +E+
Sbjct: 319 PLSQSKEKKYTFQEAVDLIYTSLSPLGTEY 348


>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
           Protein Hydf
          Length = 423

 Score = 26.9 bits (58), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 52  SEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVTRKHFSLE 111
           + FS +E   + D    + S +++EE   L D D        + ME CT     +     
Sbjct: 289 TTFSIVESRYRGDLAYFVESVRKIEE---LEDGD------TVVIMEGCTHRPLTEDIGRV 339

Query: 112 RIPDKYFSHNGLIMNYR 128
           +IP    +H G  +N++
Sbjct: 340 KIPRWLVNHTGAQLNFK 356


>pdb|4HLB|A Chain A, Crystal Structure Of A Hypothetical Protein
          (Despig_01740) From Desulfovibrio Piger Atcc 29098 At
          1.80 A Resolution
          Length = 115

 Score = 26.9 bits (58), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 15 VNVQVYVDGMP-ALSSKERKATLREFYAIIYPSLRQLESEFS 55
          V+V  Y  G+     + +RK T  EF AI   S+R+L+  F 
Sbjct: 44 VDVAAYAKGIDIVFVAADRKXTRAEFSAIASRSIRELKERFG 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,686,199
Number of Sequences: 62578
Number of extensions: 123589
Number of successful extensions: 362
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 9
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)