BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032271
         (144 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P08066|DHSB_BACSU Succinate dehydrogenase iron-sulfur subunit OS=Bacillus subtilis
           (strain 168) GN=sdhB PE=3 SV=3
          Length = 253

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 44  YPSLRQLESEFSELEDNSKR-------DQCSEISSRKRVEERRKLSDKDLDRNDECGICM 96
           +P +R L+ + S + D+ K+       D   ++    R+ E+R+    +L +   CG+C+
Sbjct: 103 FPVVRDLQVDRSRMFDSLKKVKAWIPIDGTYDLGPGPRMPEKRRQWAYELSKCMTCGVCL 162

Query: 97  ENCTKMVTRKHF 108
           E C  + ++  F
Sbjct: 163 EACPNVNSKSKF 174


>sp|P48144|PACA_CLAMA Glucagon family neuropeptides OS=Clarias macrocephalus PE=2 SV=1
          Length = 195

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 27  LSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRK 73
           +S++ R A   + Y + YP  R+ E+    L D + RD   ++S+RK
Sbjct: 57  MSARSRPALPEDAYTLYYPPERRAETHADGLLDRALRDILVQLSARK 103


>sp|Q3A4P3|SYT_PELCD Threonine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380
           / Gra Bd 1) GN=thrS PE=3 SV=1
          Length = 638

 Score = 30.8 bits (68), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 31  ERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQ 65
           E+ A L+  YA  +P  ++L +  ++LE+  KRD 
Sbjct: 212 EKNAMLQRIYATAFPDKKELRTYLNKLEEARKRDH 246


>sp|P50104|STB4_YEAST Probable transcriptional regulatory protein STB4 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=STB4 PE=1
           SV=1
          Length = 949

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 30/66 (45%)

Query: 56  ELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVTRKHFSLERIPD 115
           +LE     D   +  +R + E+ +K+ D D D   + G   EN  +     H + +R+P 
Sbjct: 825 QLEATLGTDHGDDTPNRNKFEQFKKVGDNDADVEVDAGEREENADERQENPHNNSKRVPL 884

Query: 116 KYFSHN 121
              SHN
Sbjct: 885 ATRSHN 890


>sp|Q07702|GYRA_MYCTU DNA gyrase subunit A OS=Mycobacterium tuberculosis GN=gyrA PE=1
           SV=2
          Length = 838

 Score = 30.4 bits (67), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 43  IYPSLRQLESEFSELED---------NSKRDQCSEISSRKRVEERRKLSDKDLDRNDECG 93
           I   L ++E+E ++LED            RD+ +EI  R   + R ++   D D +DE  
Sbjct: 451 IIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDL 510

Query: 94  ICMENCTKMVTRKHFSLERIPDKYFSH 120
           I  E+    +T   ++     D Y S 
Sbjct: 511 IAREDVVVTITETGYAKRTKTDLYRSQ 537


>sp|Q0AH18|SECA_NITEC Protein translocase subunit SecA OS=Nitrosomonas eutropha (strain
           C91) GN=secA PE=3 SV=1
          Length = 909

 Score = 30.4 bits (67), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 32  RKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDE 91
           R   L + Y+ I  ++ +LE+  S L D   RD+ SE   ++R+    KL   D    + 
Sbjct: 13  RNDRLVKQYSRIVRTINELEAVISPLSDEELRDKTSEF--KQRISNGEKL---DQLLPEA 67

Query: 92  CGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAAY 142
             +  E   +++  +HF ++ I      H G I   R    ++ +  +  Y
Sbjct: 68  FAVVREASKRVLGMRHFDVQLIGGMVL-HEGKIAEMRTGEGKTLMATLPIY 117


>sp|A1AM15|SECA_PELPD Protein translocase subunit SecA OS=Pelobacter propionicus (strain
           DSM 2379) GN=secA PE=3 SV=1
          Length = 896

 Score = 30.0 bits (66), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 28  SSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLD 87
           S  ER+  +++ + I+   + +LE+  S L D   RD+ +E   R       K    D  
Sbjct: 12  SKNERE--IKKLWPIV-ARINELEASISPLSDEQLRDKTAEFKER-----HGKGESLDAL 63

Query: 88  RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAAY 142
             +   +C E   +++  +HF ++ I      H+G I   +    ++ +  + AY
Sbjct: 64  MPEAFAVCREASKRVLGMRHFDVQLIGGMVL-HSGKISEMKTGEGKTLVATLPAY 117


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,220,787
Number of Sequences: 539616
Number of extensions: 1699271
Number of successful extensions: 7267
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 7244
Number of HSP's gapped (non-prelim): 49
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)