Query 032271
Match_columns 144
No_of_seqs 114 out of 142
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 11:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.9 9.1E-23 2E-27 176.3 3.2 126 12-143 54-221 (344)
2 PHA02926 zinc finger-like prot 99.6 2.8E-16 6.1E-21 131.4 2.5 59 83-143 164-230 (242)
3 PHA03096 p28-like protein; Pro 99.1 2.2E-11 4.7E-16 103.3 2.6 48 90-140 179-231 (284)
4 PHA02929 N1R/p28-like protein; 99.0 1.6E-10 3.4E-15 96.2 2.4 55 85-142 170-226 (238)
5 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.2E-09 2.6E-14 69.3 0.8 44 89-143 2-48 (50)
6 PF13639 zf-RING_2: Ring finge 98.7 3.8E-09 8.2E-14 65.3 0.6 40 90-139 1-44 (44)
7 PLN03208 E3 ubiquitin-protein 98.7 1.1E-08 2.3E-13 83.6 2.6 53 80-143 9-79 (193)
8 cd00162 RING RING-finger (Real 98.4 7.1E-08 1.5E-12 56.2 1.3 42 91-142 1-45 (45)
9 KOG0823 Predicted E3 ubiquitin 98.2 5E-07 1.1E-11 75.8 1.3 46 86-142 44-94 (230)
10 PF15227 zf-C3HC4_4: zinc fing 98.2 5.5E-07 1.2E-11 56.6 0.9 36 92-138 1-42 (42)
11 KOG0320 Predicted E3 ubiquitin 98.1 8E-07 1.7E-11 72.8 1.5 44 90-142 132-177 (187)
12 smart00184 RING Ring finger. E 98.1 1.5E-06 3.3E-11 48.8 2.1 36 92-138 1-39 (39)
13 PF13923 zf-C3HC4_2: Zinc fing 98.1 1E-06 2.3E-11 53.5 1.3 36 92-138 1-39 (39)
14 PF00097 zf-C3HC4: Zinc finger 98.1 1.4E-06 3.1E-11 52.5 1.6 36 92-138 1-41 (41)
15 PF12678 zf-rbx1: RING-H2 zinc 98.1 1E-06 2.3E-11 60.6 1.1 49 89-139 19-73 (73)
16 PF14634 zf-RING_5: zinc-RING 98.1 2.1E-06 4.5E-11 53.6 2.1 42 91-140 1-44 (44)
17 KOG0317 Predicted E3 ubiquitin 98.0 4.2E-06 9E-11 72.4 2.7 44 89-143 239-284 (293)
18 KOG4172 Predicted E3 ubiquitin 98.0 1.9E-06 4.1E-11 59.8 0.4 45 88-143 6-54 (62)
19 TIGR00599 rad18 DNA repair pro 97.9 7E-06 1.5E-10 73.0 2.1 49 84-143 21-71 (397)
20 KOG2177 Predicted E3 ubiquitin 97.8 6.5E-06 1.4E-10 60.6 1.4 44 85-139 9-54 (386)
21 PF12861 zf-Apc11: Anaphase-pr 97.8 1.6E-05 3.5E-10 58.0 2.9 57 85-143 17-82 (85)
22 KOG1785 Tyrosine kinase negati 97.8 7.6E-06 1.7E-10 74.7 1.4 44 89-143 369-416 (563)
23 KOG0802 E3 ubiquitin ligase [P 97.7 9.9E-06 2.1E-10 72.8 1.0 50 86-141 288-339 (543)
24 COG5243 HRD1 HRD ubiquitin lig 97.6 5E-05 1.1E-09 68.8 3.9 54 86-142 284-344 (491)
25 smart00504 Ubox Modified RING 97.5 5.7E-05 1.2E-09 48.4 1.9 44 89-143 1-46 (63)
26 TIGR00570 cdk7 CDK-activating 97.5 6E-05 1.3E-09 65.5 2.5 47 89-144 3-55 (309)
27 COG5574 PEX10 RING-finger-cont 97.5 7E-05 1.5E-09 64.4 2.3 49 81-141 208-260 (271)
28 KOG2164 Predicted E3 ubiquitin 97.4 5.5E-05 1.2E-09 69.6 1.5 45 87-142 184-235 (513)
29 PF14835 zf-RING_6: zf-RING of 97.2 9.8E-05 2.1E-09 51.9 0.4 44 88-141 6-49 (65)
30 KOG0287 Postreplication repair 97.1 0.0002 4.4E-09 64.4 1.1 49 85-144 19-69 (442)
31 COG5540 RING-finger-containing 97.1 0.00022 4.8E-09 63.2 1.2 49 87-143 321-372 (374)
32 KOG4265 Predicted E3 ubiquitin 97.0 0.00028 6.2E-09 62.4 1.2 46 87-143 288-336 (349)
33 PF13445 zf-RING_UBOX: RING-ty 96.5 0.00062 1.3E-08 43.5 -0.1 28 92-131 1-32 (43)
34 PF11793 FANCL_C: FANCL C-term 96.3 0.0011 2.3E-08 45.6 0.3 53 88-143 1-66 (70)
35 KOG4159 Predicted E3 ubiquitin 96.3 0.0017 3.7E-08 58.0 1.7 52 82-144 77-130 (398)
36 KOG0311 Predicted E3 ubiquitin 96.1 0.00097 2.1E-08 59.7 -1.1 46 87-142 41-89 (381)
37 KOG4628 Predicted E3 ubiquitin 95.9 0.0044 9.5E-08 54.9 1.8 46 90-143 230-278 (348)
38 COG5432 RAD18 RING-finger-cont 95.6 0.0049 1.1E-07 54.9 1.1 51 82-143 18-70 (391)
39 KOG0978 E3 ubiquitin ligase in 95.5 0.0042 9E-08 59.2 0.5 43 90-143 644-689 (698)
40 KOG0804 Cytoplasmic Zn-finger 95.5 0.0052 1.1E-07 56.6 0.8 52 83-141 169-220 (493)
41 KOG1002 Nucleotide excision re 95.2 0.011 2.3E-07 56.3 2.0 98 20-142 481-585 (791)
42 KOG0824 Predicted E3 ubiquitin 95.2 0.01 2.3E-07 52.3 1.7 45 88-143 6-53 (324)
43 KOG4275 Predicted E3 ubiquitin 94.5 0.0096 2.1E-07 52.8 -0.1 43 89-144 300-343 (350)
44 KOG0297 TNF receptor-associate 94.2 0.022 4.8E-07 50.0 1.5 46 86-142 18-66 (391)
45 PF04564 U-box: U-box domain; 94.1 0.022 4.8E-07 38.8 1.1 44 89-143 4-50 (73)
46 PF14447 Prok-RING_4: Prokaryo 93.8 0.023 4.9E-07 38.9 0.5 43 89-142 7-49 (55)
47 KOG4185 Predicted E3 ubiquitin 93.6 0.035 7.6E-07 45.5 1.5 48 89-141 3-53 (296)
48 COG5236 Uncharacterized conser 93.2 0.055 1.2E-06 49.4 2.1 48 83-141 55-106 (493)
49 KOG0828 Predicted E3 ubiquitin 93.0 0.051 1.1E-06 51.2 1.8 56 86-143 568-634 (636)
50 KOG4739 Uncharacterized protei 91.9 0.07 1.5E-06 45.2 1.1 29 113-143 20-48 (233)
51 PF05290 Baculo_IE-1: Baculovi 91.8 0.11 2.3E-06 41.4 1.9 49 88-143 79-132 (140)
52 KOG2932 E3 ubiquitin ligase in 91.8 0.065 1.4E-06 48.1 0.7 30 112-143 105-134 (389)
53 PF14569 zf-UDP: Zinc-binding 91.6 0.13 2.8E-06 37.7 2.0 52 89-144 9-63 (80)
54 KOG1941 Acetylcholine receptor 91.3 0.084 1.8E-06 48.7 1.0 53 81-140 357-413 (518)
55 PF14570 zf-RING_4: RING/Ubox 91.2 0.19 4E-06 33.4 2.3 45 92-143 1-48 (48)
56 KOG1571 Predicted E3 ubiquitin 90.5 0.14 2.9E-06 45.9 1.5 48 83-143 299-347 (355)
57 KOG1001 Helicase-like transcri 89.7 0.23 5E-06 47.2 2.4 42 90-143 455-500 (674)
58 COG5219 Uncharacterized conser 88.9 0.16 3.6E-06 51.2 0.9 56 83-142 1463-1522(1525)
59 KOG4692 Predicted E3 ubiquitin 88.7 0.27 6E-06 45.0 2.0 52 80-142 411-466 (489)
60 COG5194 APC11 Component of SCF 87.0 0.34 7.4E-06 36.0 1.3 26 117-142 53-80 (88)
61 KOG0825 PHD Zn-finger protein 86.5 0.21 4.6E-06 49.5 0.1 30 114-143 140-171 (1134)
62 KOG3002 Zn finger protein [Gen 86.4 0.34 7.4E-06 41.9 1.2 44 86-142 45-90 (299)
63 KOG1813 Predicted E3 ubiquitin 85.3 0.35 7.5E-06 42.8 0.8 40 91-141 243-284 (313)
64 PF03854 zf-P11: P-11 zinc fin 85.2 0.27 5.8E-06 33.3 0.0 25 119-143 20-46 (50)
65 PLN02400 cellulose synthase 85.2 0.32 7E-06 48.8 0.6 57 84-144 31-90 (1085)
66 COG5152 Uncharacterized conser 84.7 0.54 1.2E-05 40.3 1.6 39 91-140 198-238 (259)
67 PLN02638 cellulose synthase A 84.2 0.37 7.9E-06 48.4 0.5 53 88-144 16-71 (1079)
68 PF08746 zf-RING-like: RING-li 84.0 0.86 1.9E-05 28.9 2.0 39 92-138 1-43 (43)
69 KOG1734 Predicted RING-contain 83.9 0.47 1E-05 42.0 1.0 46 89-140 224-278 (328)
70 PLN02436 cellulose synthase A 83.9 0.41 8.9E-06 48.1 0.7 57 84-144 31-90 (1094)
71 KOG2879 Predicted E3 ubiquitin 83.7 0.71 1.5E-05 40.6 2.0 51 80-141 230-285 (298)
72 KOG2660 Locus-specific chromos 83.5 0.3 6.4E-06 43.5 -0.4 48 86-143 12-61 (331)
73 KOG1815 Predicted E3 ubiquitin 83.3 0.76 1.6E-05 40.8 2.0 32 86-128 67-99 (444)
74 PLN02189 cellulose synthase 81.0 0.73 1.6E-05 46.2 1.2 55 86-144 31-88 (1040)
75 PF11789 zf-Nse: Zinc-finger o 80.8 0.56 1.2E-05 31.4 0.2 39 89-137 11-53 (57)
76 PLN02915 cellulose synthase A 80.2 0.62 1.3E-05 46.7 0.4 53 88-144 14-69 (1044)
77 PF08403 AA_permease_N: Amino 78.2 0.9 2E-05 32.5 0.6 17 42-58 38-54 (74)
78 COG5175 MOT2 Transcriptional r 77.5 1.8 3.8E-05 39.8 2.4 46 89-142 14-63 (480)
79 KOG1814 Predicted E3 ubiquitin 77.2 1.4 3.1E-05 40.6 1.7 31 87-128 182-215 (445)
80 KOG3899 Uncharacterized conser 76.8 0.96 2.1E-05 40.6 0.5 50 92-142 288-364 (381)
81 KOG4362 Transcriptional regula 76.8 1.1 2.4E-05 43.1 1.0 42 89-141 21-67 (684)
82 PF05883 Baculo_RING: Baculovi 75.7 0.98 2.1E-05 35.6 0.3 40 88-131 25-66 (134)
83 KOG1100 Predicted E3 ubiquitin 75.2 1.1 2.5E-05 36.7 0.5 38 92-142 161-199 (207)
84 KOG3800 Predicted E3 ubiquitin 74.5 2 4.4E-05 37.9 1.9 30 114-144 20-52 (300)
85 KOG0827 Predicted E3 ubiquitin 73.1 2.1 4.5E-05 39.6 1.7 45 90-141 5-54 (465)
86 PF10272 Tmpp129: Putative tra 72.6 4.3 9.3E-05 36.3 3.5 58 85-142 267-350 (358)
87 KOG1493 Anaphase-promoting com 68.8 1.5 3.3E-05 32.3 -0.1 26 117-142 50-80 (84)
88 TIGR03738 PRTRC_C PRTRC system 68.7 5.8 0.00013 28.1 2.8 34 11-48 5-40 (66)
89 PF10367 Vps39_2: Vacuolar sor 67.6 5.8 0.00013 27.1 2.6 42 78-128 67-108 (109)
90 PF07800 DUF1644: Protein of u 64.7 7.4 0.00016 31.8 3.1 16 89-104 2-17 (162)
91 KOG1952 Transcription factor N 63.4 3.2 7E-05 41.4 0.9 46 87-141 189-245 (950)
92 PLN02195 cellulose synthase A 61.0 4.4 9.5E-05 40.7 1.4 53 87-143 4-59 (977)
93 PF04641 Rtf2: Rtf2 RING-finge 60.3 4.1 8.9E-05 33.8 0.9 51 86-143 110-161 (260)
94 KOG1428 Inhibitor of type V ad 56.8 5.9 0.00013 42.8 1.5 52 83-143 3480-3544(3738)
95 KOG3268 Predicted E3 ubiquitin 53.6 8 0.00017 32.8 1.6 64 63-142 151-227 (234)
96 PF07975 C1_4: TFIIH C1-like d 52.2 10 0.00022 25.4 1.6 24 114-139 25-50 (51)
97 smart00744 RINGv The RING-vari 48.6 15 0.00032 23.6 1.9 20 120-139 26-49 (49)
98 KOG0298 DEAD box-containing he 48.4 7.4 0.00016 40.4 0.7 46 83-140 1147-1196(1394)
99 KOG1812 Predicted E3 ubiquitin 46.5 8.4 0.00018 34.2 0.7 33 88-128 145-178 (384)
100 COG5222 Uncharacterized conser 45.6 11 0.00024 34.3 1.2 41 90-140 275-318 (427)
101 KOG2930 SCF ubiquitin ligase, 42.8 13 0.00027 29.0 1.0 23 118-140 81-105 (114)
102 KOG4185 Predicted E3 ubiquitin 42.5 7.5 0.00016 31.9 -0.2 24 118-141 239-265 (296)
103 PF14454 Prok_Ub: Prokaryotic 39.2 42 0.0009 23.5 3.1 39 12-56 7-47 (65)
104 smart00647 IBR In Between Ring 39.1 9.5 0.00021 23.9 -0.1 17 113-131 43-59 (64)
105 smart00412 Cu_FIST Copper-Fist 38.6 15 0.00032 23.8 0.7 15 122-136 9-23 (39)
106 KOG4021 Mitochondrial ribosoma 37.3 17 0.00036 31.2 1.0 19 124-142 97-118 (239)
107 KOG1356 Putative transcription 37.2 11 0.00025 37.5 0.0 26 113-140 246-279 (889)
108 KOG2114 Vacuolar assembly/sort 35.3 26 0.00056 35.3 2.1 65 66-143 813-883 (933)
109 KOG1645 RING-finger-containing 34.4 19 0.0004 33.7 0.9 41 89-140 4-53 (463)
110 KOG2113 Predicted RNA binding 34.0 26 0.00055 32.0 1.7 85 40-139 298-383 (394)
111 KOG4367 Predicted Zn-finger pr 29.2 35 0.00076 32.7 1.8 33 87-130 2-34 (699)
112 COG5220 TFB3 Cdk activating ki 28.2 16 0.00034 32.3 -0.5 47 89-143 10-64 (314)
113 PF12023 DUF3511: Domain of un 27.7 5.2 0.00011 26.8 -2.8 27 5-38 2-32 (47)
114 PHA02825 LAP/PHD finger-like p 27.6 55 0.0012 26.8 2.5 44 88-143 7-59 (162)
115 PF10571 UPF0547: Uncharacteri 25.4 29 0.00063 20.1 0.4 10 133-142 1-10 (26)
116 TIGR02878 spore_ypjB sporulati 23.2 34 0.00074 29.4 0.6 16 33-48 124-142 (233)
117 KOG2034 Vacuolar sorting prote 23.1 89 0.0019 31.7 3.4 36 84-128 812-847 (911)
118 KOG2068 MOT2 transcription fac 22.2 59 0.0013 29.2 1.9 47 90-143 250-298 (327)
119 KOG1538 Uncharacterized conser 22.0 41 0.00088 33.9 0.9 29 112-142 1038-1076(1081)
120 PF10548 P22_AR_C: P22AR C-ter 21.8 58 0.0013 22.9 1.4 20 36-55 26-45 (74)
121 PF01485 IBR: IBR domain; Int 21.4 20 0.00043 22.3 -0.9 15 118-132 46-60 (64)
122 PRK07735 NADH dehydrogenase su 20.1 1.3E+02 0.0029 28.0 3.7 39 6-46 352-401 (430)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.1e-23 Score=176.27 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=98.0
Q ss_pred eeeEEEEEe-eCCCCcCchhhh--hchHhhhHHhhhch---------Hhhhhhcccchhhh----------hhhchhhhh
Q 032271 12 KLFVNVQVY-VDGMPALSSKER--KATLREFYAIIYPS---------LRQLESEFSELEDN----------SKRDQCSEI 69 (144)
Q Consensus 12 ~~iliykvy-~dG~~~~s~~eR--kAtireFY~vI~Ps---------L~qL~~~~~d~e~~----------~q~~~c~e~ 69 (144)
-.+++|.++ .|+..+||..+| +.++++|+++.+|+ +-+.+.+..++... .+...|...
T Consensus 54 ~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~ 133 (344)
T KOG1039|consen 54 SQSLIWANAVADASATMSVSSRPVLTAIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQ 133 (344)
T ss_pred chhhcccchhhccccccchhcccchhhhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHH
Confidence 456888888 899999999998 89999999999999 54445444444333 122222222
Q ss_pred hhh-----------hHHHHhhcccccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc-------
Q 032271 70 SSR-----------KRVEERRKLSDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR------- 131 (144)
Q Consensus 70 ~~r-----------kd~E~~~k~s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r------- 131 (144)
++. .++| ++++++.+++++||||||++.+++ ....+++|||| |+|+||++|||+||
T Consensus 134 ~~~~~~~~~~~~~~~~~e---~~~a~~~s~~k~CGICme~i~ek~-~~~~rfgilpn--C~H~~Cl~Cir~wr~~~q~~~ 207 (344)
T KOG1039|consen 134 YKNSMKRGSSCALSSAME---RSFALQKSSEKECGICMETINEKA-ASERRFGILPN--CNHSFCLNCIRKWRQATQFES 207 (344)
T ss_pred HhhhhcccccccchHhhh---hccCcCccccccceehhhhccccc-hhhhhcccCCC--cchhhhhcHhHhhhhhhcccc
Confidence 111 1444 667888899999999999998888 77788899999 99999999999998
Q ss_pred --cCCChhhhcccc
Q 032271 132 --SQSCLFAVAAYR 143 (144)
Q Consensus 132 --SkSCP~CR~~l~ 143 (144)
+++|||||++.+
T Consensus 208 ~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 208 KTSKSCPFCRVPSS 221 (344)
T ss_pred ccccCCCcccCccc
Confidence 789999999865
No 2
>PHA02926 zinc finger-like protein; Provisional
Probab=99.60 E-value=2.8e-16 Score=131.43 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=49.6
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccccC--------CChhhhcccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQ--------SCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rSk--------SCP~CR~~l~ 143 (144)
..+.|+|++||||||.+.++-.++.+.+|+|++ |+|+||+.||+.|++. +||+||..+.
T Consensus 164 ~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~--CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 164 VYRVSKEKECGICYEVVYSKRLENDRYFGLLDS--CNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHhccCCCCCccCccccccccccccccccccCC--CCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 346788999999999987765556667788999 9999999999999863 5999999864
No 3
>PHA03096 p28-like protein; Provisional
Probab=99.13 E-value=2.2e-11 Score=103.27 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=36.8
Q ss_pred ccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc-----CCChhhhc
Q 032271 90 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS-----QSCLFAVA 140 (144)
Q Consensus 90 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS-----kSCP~CR~ 140 (144)
++||||||++..+. .....+|+||+ |+|.||+.|++.||+ ..||.||.
T Consensus 179 k~c~ic~e~~~~k~-~~~~~fgil~~--c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKY-IIKKYYGILSE--IKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhc-ccccccccccc--CCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 89999999976553 23555667999 999999999999986 34555543
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.00 E-value=1.6e-10 Score=96.17 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=40.5
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc--cCCChhhhccc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--SQSCLFAVAAY 142 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--SkSCP~CR~~l 142 (144)
+.+.+.+|+||||...+... +...++.+++ |+|.||..|+..|. +.+||.||..+
T Consensus 170 ~~~~~~eC~ICle~~~~~~~-~~~~~~vl~~--C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEI-KNMYFGILSN--CNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred cCCCCCCCccCCcccccCcc-ccccceecCC--CCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 56778999999998533210 1111344688 99999999999884 56999999876
No 5
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.80 E-value=1.2e-09 Score=69.32 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=36.4
Q ss_pred CccccccccccccceecccCccCCCCCCCCCch-hhhhHHhcc--ccCCChhhhcccc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
+.+|.||++.....++ .+ |+|. ||..|+.+| +.+.||+||.++.
T Consensus 2 ~~~C~iC~~~~~~~~~---------~p--CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVL---------LP--CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEE---------ET--TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEE---------eC--CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 6789999998777676 45 9999 999999977 6789999999875
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.70 E-value=3.8e-09 Score=65.32 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=29.3
Q ss_pred ccccccccccc--cceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhh
Q 032271 90 DECGICMENCT--KMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAV 139 (144)
Q Consensus 90 ~eCgICME~~~--k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR 139 (144)
++|+||||... +.+. .-+ |+|.||..|+..| ++.+||.||
T Consensus 1 d~C~IC~~~~~~~~~~~--------~l~--C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVV--------KLP--CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEE--------EET--TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEE--------Ecc--CCCeeCHHHHHHHHHhCCcCCccC
Confidence 58999999863 2222 134 9999999999976 468999998
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.67 E-value=1.1e-08 Score=83.61 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=43.2
Q ss_pred cccccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc------------------cCCChhhhcc
Q 032271 80 KLSDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR------------------SQSCLFAVAA 141 (144)
Q Consensus 80 k~s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r------------------SkSCP~CR~~ 141 (144)
+...+|...+.+|.||++...+.|+ .. |.|.||..|+..|- ..+||.||..
T Consensus 9 ~~~~~~~~~~~~CpICld~~~dPVv---------T~--CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 9 DTTLVDSGGDFDCNICLDQVRDPVV---------TL--CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred cceeccCCCccCCccCCCcCCCcEE---------cC--CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 3457788889999999998877666 56 99999999999762 2479999987
Q ss_pred cc
Q 032271 142 YR 143 (144)
Q Consensus 142 l~ 143 (144)
+.
T Consensus 78 Is 79 (193)
T PLN03208 78 VS 79 (193)
T ss_pred CC
Confidence 63
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.44 E-value=7.1e-08 Score=56.24 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=32.1
Q ss_pred cccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhccc
Q 032271 91 ECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAY 142 (144)
Q Consensus 91 eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l 142 (144)
+|.||++...+.+. +++ |+|.||..|+..|. +..||.||..+
T Consensus 1 ~C~iC~~~~~~~~~--------~~~--C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVV--------LLP--CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceE--------ecC--CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999998633222 366 99999999999664 45899999764
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=5e-07 Score=75.82 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=39.8
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-----ccCCChhhhccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-----RSQSCLFAVAAY 142 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-----rSkSCP~CR~~l 142 (144)
.+.+-+|.||+|...+.|+ .. |+|.||+-|+-+| .+++||.|+..+
T Consensus 44 ~~~~FdCNICLd~akdPVv---------Tl--CGHLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVV---------TL--CGHLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CCCceeeeeeccccCCCEE---------ee--cccceehHHHHHHHhhcCCCeeCCcccccc
Confidence 4667899999999988787 67 9999999999987 579999998754
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.18 E-value=5.5e-07 Score=56.64 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=26.2
Q ss_pred ccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-cc-----CCChhh
Q 032271 92 CGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-RS-----QSCLFA 138 (144)
Q Consensus 92 CgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-rS-----kSCP~C 138 (144)
|+||++...+.|. .+ |+|+||..|+.++ +. -+||+|
T Consensus 1 CpiC~~~~~~Pv~---------l~--CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVS---------LP--CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE----------S--SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccc---------cC--CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999988888 56 9999999999933 22 379987
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8e-07 Score=72.78 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=35.1
Q ss_pred ccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc--CCChhhhccc
Q 032271 90 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS--QSCLFAVAAY 142 (144)
Q Consensus 90 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS--kSCP~CR~~l 142 (144)
--|||||+.+.+++- -..+|+|.||-.||.++.+ .-||.||..|
T Consensus 132 ~~CPiCl~~~sek~~---------vsTkCGHvFC~~Cik~alk~~~~CP~C~kkI 177 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVP---------VSTKCGHVFCSQCIKDALKNTNKCPTCRKKI 177 (187)
T ss_pred cCCCceecchhhccc---------cccccchhHHHHHHHHHHHhCCCCCCccccc
Confidence 569999999888773 1234999999999997665 5799999654
No 12
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.13 E-value=1.5e-06 Score=48.80 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=28.5
Q ss_pred ccccccccccceecccCccCCCCCCCCCchhhhhHHhcc---ccCCChhh
Q 032271 92 CGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA---RSQSCLFA 138 (144)
Q Consensus 92 CgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~---rSkSCP~C 138 (144)
|.||++.....++ .+ |+|.||..|+..| ....||.|
T Consensus 1 C~iC~~~~~~~~~---------~~--C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVV---------LP--CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEE---------ec--CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998555444 45 9999999999976 34679987
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.12 E-value=1e-06 Score=53.47 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=27.7
Q ss_pred ccccccccccc-eecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhh
Q 032271 92 CGICMENCTKM-VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFA 138 (144)
Q Consensus 92 CgICME~~~k~-V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~C 138 (144)
|+||++...+. ++ .+ |+|.||..|+.+| ...+||.|
T Consensus 1 C~iC~~~~~~~~~~---------~~--CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVV---------TP--CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEE---------CT--TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEE---------CC--CCCchhHHHHHHHHHCcCCCcCC
Confidence 89999987666 34 56 9999999999955 35789987
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.10 E-value=1.4e-06 Score=52.48 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=29.2
Q ss_pred ccccccccccce-ecccCccCCCCCCCCCchhhhhHHhcc----ccCCChhh
Q 032271 92 CGICMENCTKMV-TRKHFSLERIPDKYFSHNGLIMNYRNA----RSQSCLFA 138 (144)
Q Consensus 92 CgICME~~~k~V-~~k~~~~~~Lpn~~C~H~fCl~Cir~~----rSkSCP~C 138 (144)
|+||++...+.+ + .+ |+|.||..|+++| .+..||.|
T Consensus 1 C~iC~~~~~~~~~~---------~~--C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVIL---------LP--CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEE---------TT--TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEE---------ec--CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999876666 4 56 9999999999954 34679987
No 15
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.10 E-value=1e-06 Score=60.65 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=32.3
Q ss_pred Cccccccccccccceecc-cCccC---CCCCCCCCchhhhhHHhcc--ccCCChhhh
Q 032271 89 NDECGICMENCTKMVTRK-HFSLE---RIPDKYFSHNGLIMNYRNA--RSQSCLFAV 139 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k-~~~~~---~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR 139 (144)
++.|+||++.......+- ..+.+ .++. |+|.|-..||++| .+.+||.||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~--C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP--CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET--TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc--cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 445999999863332211 11111 2456 9999999999987 457999998
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.08 E-value=2.1e-06 Score=53.61 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=30.9
Q ss_pred cccccccccccceecccCccCCCCCCCCCchhhhhHHhccc--cCCChhhhc
Q 032271 91 ECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--SQSCLFAVA 140 (144)
Q Consensus 91 eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--SkSCP~CR~ 140 (144)
+|+||.+...+ ..+ -.|.+ |+|+||..|+.+.. +..||+||.
T Consensus 1 ~C~~C~~~~~~-----~~~-~~l~~--CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE-----ERR-PRLTS--CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC-----CCC-eEEcc--cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 59999988511 001 12467 99999999999665 789999984
No 17
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.2e-06 Score=72.41 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=33.7
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc--CCChhhhcccc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS--QSCLFAVAAYR 143 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS--kSCP~CR~~l~ 143 (144)
+--|.+|||+....-. -+|+|.||+.||..|-+ ..||.||..+.
T Consensus 239 ~~kC~LCLe~~~~pSa-----------TpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSA-----------TPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCceEEEecCCCCCCc-----------CcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 4789999998522211 33999999999997754 57999998753
No 18
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.9e-06 Score=59.84 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=37.0
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCch-hhhhHHh-ccc--cCCChhhhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYR-NAR--SQSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir-~~r--SkSCP~CR~~l~ 143 (144)
-++||-||||.-...|+ -- |+|. ||-.|-+ .|+ ...||.||++++
T Consensus 6 ~~dECTICye~pvdsVl---------Yt--CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVL---------YT--CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcchHHH---------HH--cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 35999999998777677 56 9998 9999977 555 478999999876
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=7e-06 Score=72.98 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=37.9
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-c-cCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-R-SQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-r-SkSCP~CR~~l~ 143 (144)
-+++.+..|+||++.....|+ .. |+|.||..|++.| . ...||.||..+.
T Consensus 21 ~~Le~~l~C~IC~d~~~~Pvi---------tp--CgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVL---------TS--CSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred cccccccCCCcCchhhhCccC---------CC--CCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 345668899999998766555 46 9999999999943 2 246999998753
No 20
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6.5e-06 Score=60.61 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=35.2
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc--CCChhhh
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS--QSCLFAV 139 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS--kSCP~CR 139 (144)
.++.+.+|.||+|.....++ .+ |.|+||-.|+..+.. -.||.||
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~---------l~--C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVL---------LP--CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred hccccccChhhHHHhhcCcc---------cc--ccchHhHHHHHHhcCCCcCCcccC
Confidence 44568999999998655433 45 999999999995544 7899999
No 21
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.80 E-value=1.6e-05 Score=58.01 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=38.5
Q ss_pred ccCCCccccccccccccceecccCccC----CCCCCCCCchhhhhHHhcccc-----CCChhhhcccc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLE----RIPDKYFSHNGLIMNYRNARS-----QSCLFAVAAYR 143 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~----~Lpn~~C~H~fCl~Cir~~rS-----kSCP~CR~~l~ 143 (144)
|+..|++||||...-...--.-.+|.. .+.. |+|+|=+-||.+|-+ +.||.||...+
T Consensus 17 d~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~--C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 17 DVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGK--CSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ecCCCCceeeEecccccCCCCccCCCCCCceeecc--CccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 455699999998764322211223322 1335 999999999997743 57999998753
No 22
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.79 E-value=7.6e-06 Score=74.66 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=37.1
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc----cCCChhhhcccc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR----SQSCLFAVAAYR 143 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r----SkSCP~CR~~l~ 143 (144)
-+.|-||-|+...+-. .. |+|.+|-.|..+|. +|.|||||..+|
T Consensus 369 FeLCKICaendKdvkI---------EP--CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAENDKDVKI---------EP--CGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccCCCccc---------cc--ccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 3579999999766444 45 99999999999997 689999999886
No 23
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=9.9e-06 Score=72.82 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=35.8
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAA 141 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~ 141 (144)
...+..|-||+|.....-- -..-+|| |+|.|+..|+++| |+++||+||..
T Consensus 288 ~~~~~~C~IC~e~l~~~~~---~~~~rL~---C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHN---ITPKRLP---CGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred hhcCCeeeeechhhccccc---cccceee---cccchHHHHHHHHHHHhCcCCcchhh
Confidence 3447899999997533100 0001223 9999999999988 89999999983
No 24
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=5e-05 Score=68.83 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=37.2
Q ss_pred cCCCcccccccccccccee-cccCccC----CCCCCCCCchhhhhHHhcc--ccCCChhhhccc
Q 032271 86 LDRNDECGICMENCTKMVT-RKHFSLE----RIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAY 142 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~-~k~~~~~----~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l 142 (144)
.+.|.-|-||||-....-- +-..+.+ +|| |+|.+=+.|.+|| |+|+||.||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp---CGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP---CGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc---ccceeeHHHHHHHHHhccCCCcccCcc
Confidence 4568899999976211100 0011111 355 9999999999999 899999999874
No 25
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.50 E-value=5.7e-05 Score=48.41 Aligned_cols=44 Identities=9% Similarity=-0.105 Sum_probs=35.1
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
+..|.||++.....|. .. |+|+||..||.+| ....||+|+..+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~---------~~--~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVI---------LP--SGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEE---------CC--CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 3469999998877676 44 8999999999955 3568999998763
No 26
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=6e-05 Score=65.52 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=33.4
Q ss_pred Ccccccccccc---ccceecccCccCCCCCCCCCchhhhhHHhc-c--ccCCChhhhccccC
Q 032271 89 NDECGICMENC---TKMVTRKHFSLERIPDKYFSHNGLIMNYRN-A--RSQSCLFAVAAYRE 144 (144)
Q Consensus 89 e~eCgICME~~---~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~-~--rSkSCP~CR~~l~~ 144 (144)
+..|.||.... ..+.+ +-| .|+|.||-.|+.+ | .+..||.|+.++++
T Consensus 3 ~~~CP~Ck~~~y~np~~kl--------~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKL--------MVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCccccc--------ccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 46899999842 22211 123 5999999999994 4 34689999998863
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=7e-05 Score=64.36 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=37.4
Q ss_pred ccccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhc-cc---cCCChhhhcc
Q 032271 81 LSDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN-AR---SQSCLFAVAA 141 (144)
Q Consensus 81 ~s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~-~r---SkSCP~CR~~ 141 (144)
+.-+. .++-.|.||||.-...+- -. |+|.||+.|+-- |- ..-||.||..
T Consensus 208 ~pfip-~~d~kC~lC~e~~~~ps~---------t~--CgHlFC~~Cl~~~~t~~k~~~CplCRak 260 (271)
T COG5574 208 LPFIP-LADYKCFLCLEEPEVPSC---------TP--CGHLFCLSCLLISWTKKKYEFCPLCRAK 260 (271)
T ss_pred CCccc-ccccceeeeecccCCccc---------cc--ccchhhHHHHHHHHHhhccccCchhhhh
Confidence 34444 778899999998766554 34 999999999985 64 3569999974
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=5.5e-05 Score=69.56 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=34.7
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh-cccc------CCChhhhccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR-NARS------QSCLFAVAAY 142 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-~~rS------kSCP~CR~~l 142 (144)
+.+..|.||+|.-.-.+. -+ |+|.||..|+- -|.. .+||.||..+
T Consensus 184 ~t~~~CPICL~~~~~p~~---------t~--CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVR---------TN--CGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CcCCcCCcccCCCCcccc---------cc--cCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 348999999997543333 57 99999999998 3332 6899999876
No 29
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.20 E-value=9.8e-05 Score=51.89 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=23.5
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccccCCChhhhcc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAA 141 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rSkSCP~CR~~ 141 (144)
+-.-|.+|.+...+.|. |.+ |.|.||..|++.--+.-||.|..+
T Consensus 6 ~lLrCs~C~~~l~~pv~--------l~~--CeH~fCs~Ci~~~~~~~CPvC~~P 49 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVC--------LGG--CEHIFCSSCIRDCIGSECPVCHTP 49 (65)
T ss_dssp HTTS-SSS-S--SS-B-----------S--SS--B-TTTGGGGTTTB-SSS--B
T ss_pred HhcCCcHHHHHhcCCce--------ecc--CccHHHHHHhHHhcCCCCCCcCCh
Confidence 35679999999877764 467 999999999995444459999875
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.07 E-value=0.0002 Score=64.37 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=35.9
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhc--cccCCChhhhccccC
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN--ARSQSCLFAVAAYRE 144 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~--~rSkSCP~CR~~l~~ 144 (144)
+++.-.-||||.|-..-.++ -+ |+|+||.-|||. ...-.||.|+++.++
T Consensus 19 ~lD~lLRC~IC~eyf~ip~i---------tp--CsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMI---------TP--CSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hhHHHHHHhHHHHHhcCcee---------cc--ccchHHHHHHHHHhccCCCCCceecccch
Confidence 44445679999997543333 35 999999999993 234689999998753
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00022 Score=63.22 Aligned_cols=49 Identities=29% Similarity=0.402 Sum_probs=36.7
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
....||.|||+...|. - ..-.|| |+|-|=-.|+.+|- +..||.||.++.
T Consensus 321 ~~GveCaICms~fiK~-d----~~~vlP---C~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKN-D----RLRVLP---CDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhccc-c----eEEEec---cCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3458999999987642 1 011124 99999999999995 588999998763
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00028 Score=62.41 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=34.9
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCch-hhhhHHhccc--cCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNAR--SQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~r--SkSCP~CR~~l~ 143 (144)
+..+||-|||.--..+++ -+ |+|. +|-.|-..-| ...||.||..+.
T Consensus 288 ~~gkeCVIClse~rdt~v---------LP--CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVV---------LP--CRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEE---------ec--chhhehhHhHHHHHHHhhcCCCccccchH
Confidence 446999999955444444 24 9999 9999998656 456999999875
No 33
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.51 E-value=0.00062 Score=43.54 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=16.4
Q ss_pred ccccccccc----cceecccCccCCCCCCCCCchhhhhHHhccc
Q 032271 92 CGICMENCT----KMVTRKHFSLERIPDKYFSHNGLIMNYRNAR 131 (144)
Q Consensus 92 CgICME~~~----k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r 131 (144)
|.||.|..+ .++| . |+|+||-+|+.++-
T Consensus 1 CpIc~e~~~~~n~P~~L----------~--CGH~~c~~cl~~l~ 32 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVL----------P--CGHVFCKDCLQKLS 32 (43)
T ss_dssp -TTT----TTSS-EEE-----------S--SS-EEEHHHHHHHH
T ss_pred CCccccccCCCCCCEEE----------e--CccHHHHHHHHHHH
Confidence 789999434 4556 4 99999999999543
No 34
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.34 E-value=0.0011 Score=45.64 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=19.2
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-------c------cCCChhhhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-------R------SQSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-------r------SkSCP~CR~~l~ 143 (144)
++.+||||++...+ ....+.-.-+|..|++.|=+.|...| | ...||.|+.+|.
T Consensus 1 ~~~~C~IC~~~~~~---~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 1 QELECGICYSYRLD---DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp ---S-SSS--SS-T---T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCCcCCcEecC---CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 36899999987431 01111112344447655556777755 1 135999998774
No 35
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0017 Score=58.01 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=42.3
Q ss_pred cccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhc--cccCCChhhhccccC
Q 032271 82 SDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN--ARSQSCLFAVAAYRE 144 (144)
Q Consensus 82 s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~--~rSkSCP~CR~~l~~ 144 (144)
..-.+.++-+|-|||....+.|. .+ |+|+||..|+.+ ..+..||.||..|.+
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~---------tp--cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVV---------TP--CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cCccccchhhhhhhHhhcCCCcc---------cc--ccccccHHHHHHHhccCCCCccccccccc
Confidence 34455789999999999888887 56 999999999763 356789999998863
No 36
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.00097 Score=59.66 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=36.6
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAY 142 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l 142 (144)
..+..|.||++...+... .+.|-|-||-.||- +...++||.||..+
T Consensus 41 ~~~v~c~icl~llk~tmt----------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMT----------TKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hhhhccHHHHHHHHhhcc----------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 457889999999866555 34599999999998 22348999999875
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0044 Score=54.87 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=33.6
Q ss_pred ccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc---CCChhhhcccc
Q 032271 90 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS---QSCLFAVAAYR 143 (144)
Q Consensus 90 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS---kSCP~CR~~l~ 143 (144)
+.|-||||-- .+.-.+.+|| |+|.|=-.||..|=. ..||.|+..++
T Consensus 230 ~~CaIClEdY-----~~GdklRiLP---C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDY-----EKGDKLRILP---CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeeccc-----ccCCeeeEec---CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 4999999972 2222333455 999999999998743 56999987654
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=95.61 E-value=0.0049 Score=54.88 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=37.8
Q ss_pred cccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh-ccc-cCCChhhhcccc
Q 032271 82 SDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR-NAR-SQSCLFAVAAYR 143 (144)
Q Consensus 82 s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-~~r-SkSCP~CR~~l~ 143 (144)
|-.+++.-.-|-||-+...-.+. -. |+|+||--||| +-+ ---||.||....
T Consensus 18 SL~~LDs~lrC~IC~~~i~ip~~---------Tt--CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 18 SLKGLDSMLRCRICDCRISIPCE---------TT--CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred chhcchhHHHhhhhhheeeccee---------cc--cccchhHHHHHHHhcCCCCCccccccHH
Confidence 44455666789999988655455 45 99999999999 333 458999998653
No 39
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0042 Score=59.23 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=36.5
Q ss_pred ccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhcccc
Q 032271 90 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYR 143 (144)
Q Consensus 90 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~ 143 (144)
.-|+.|-.+-..+|+ +. |.|.||-.|++ ..|-.-||.|-.+|.
T Consensus 644 LkCs~Cn~R~Kd~vI---------~k--C~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVI---------TK--CGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred eeCCCccCchhhHHH---------Hh--cchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 459999977777777 78 99999999999 568899999988763
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.46 E-value=0.0052 Score=56.59 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=39.4
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccccCCChhhhcc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAA 141 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rSkSCP~CR~~ 141 (144)
...+-+--.|.+|+|....-+. |+++ -.|+|+|=-.|..+|.-.|||.||-.
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~------gi~t-~~c~Hsfh~~cl~~w~~~scpvcR~~ 220 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTT------GILT-ILCNHSFHCSCLMKWWDSSCPVCRYC 220 (493)
T ss_pred CCCcccCCCcchhHhhcCcccc------ceee-eecccccchHHHhhcccCcChhhhhh
Confidence 4444555789999998755443 2233 34999999999999999999999954
No 41
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.19 E-value=0.011 Score=56.25 Aligned_cols=98 Identities=13% Similarity=0.251 Sum_probs=59.8
Q ss_pred eeCCCCcCchhhhhchHhhhHHhhhchHhhhhhcccchhhhhhhchhhhhhhhhHHHHhhcccccccCCCcccccccccc
Q 032271 20 YVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENC 99 (144)
Q Consensus 20 y~dG~~~~s~~eRkAtireFY~vI~PsL~qL~~~~~d~e~~~q~~~c~e~~~rkd~E~~~k~s~id~~~e~eCgICME~~ 99 (144)
|.|.+.+..++--.-++-.=||-||--|-+|.. ..|-.+- -.|+++ +....+--.+.|||+|-++.
T Consensus 481 Y~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ-~aDHP~L-------Vl~S~~------~n~~~enk~~~~C~lc~d~a 546 (791)
T KOG1002|consen 481 YKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQ-AADHPDL-------VLYSAN------ANLPDENKGEVECGLCHDPA 546 (791)
T ss_pred HHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHH-hccCcce-------eeehhh------cCCCccccCceeecccCChh
Confidence 445555555555555566668888877665541 1111111 122221 22233344589999999997
Q ss_pred ccceecccCccCCCCCCCCCchhhhhHHh-------ccccCCChhhhccc
Q 032271 100 TKMVTRKHFSLERIPDKYFSHNGLIMNYR-------NARSQSCLFAVAAY 142 (144)
Q Consensus 100 ~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-------~~rSkSCP~CR~~l 142 (144)
.+-+. +. |-|.||--|+. .....+||.|-..|
T Consensus 547 ed~i~---------s~--ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 547 EDYIE---------SS--CHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred hhhHh---------hh--hhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 66555 67 99999999996 11238999997655
No 42
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.01 Score=52.30 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=34.5
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHh--cccc-CCChhhhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NARS-QSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~rS-kSCP~CR~~l~ 143 (144)
..+||-||.-...-.|. +. |+|-||--||. -|+. +.||.||.++-
T Consensus 6 ~~~eC~IC~nt~n~Pv~---------l~--C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVN---------LY--CFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCCcCcc---------cc--ccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 46899999976544454 45 99999999998 3444 56999998763
No 43
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.0096 Score=52.76 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=34.4
Q ss_pred CccccccccccccceecccCccCCCCCCCCCch-hhhhHHhccccCCChhhhccccC
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYRE 144 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~rSkSCP~CR~~l~~ 144 (144)
+..|-|||+...+=|+ .. |+|. -|-+|-. |-+.||+||.-++|
T Consensus 300 ~~LC~ICmDaP~DCvf---------Le--CGHmVtCt~CGk--rm~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVF---------LE--CGHMVTCTKCGK--RMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEE---------ee--cCcEEeehhhcc--ccccCchHHHHHHH
Confidence 7889999999888788 45 9997 6777754 55699999987653
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.23 E-value=0.022 Score=50.03 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=37.0
Q ss_pred cCCCccccccccccccceecccCccCCCC-CCCCCchhhhhHHhcccc--CCChhhhccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIP-DKYFSHNGLIMNYRNARS--QSCLFAVAAY 142 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lp-n~~C~H~fCl~Cir~~rS--kSCP~CR~~l 142 (144)
++.+.-|.|||-+.-.-+. + . |+|.||-.|+..|-+ +.||.||..+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~---------~~~--cgh~fC~~C~~~~~~~~~~cp~~~~~~ 66 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQ---------TTT--CGHRFCAGCLLESLSNHQKCPVCRQEL 66 (391)
T ss_pred CcccccCccccccccCCCC---------CCC--CCCcccccccchhhccCcCCccccccc
Confidence 6778999999998655444 3 5 999999999997655 5999998654
No 45
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=94.15 E-value=0.022 Score=38.78 Aligned_cols=44 Identities=14% Similarity=-0.079 Sum_probs=31.4
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
+-.|.|+.+...+-|+ .. ++|+|+-.+|.+|- ...||+|+..+.
T Consensus 4 ~f~CpIt~~lM~dPVi---------~~--~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 4 EFLCPITGELMRDPVI---------LP--SGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGB-TTTSSB-SSEEE---------ET--TSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred ccCCcCcCcHhhCcee---------CC--cCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 5679999999877777 34 67999999999773 578999988763
No 46
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.77 E-value=0.023 Score=38.89 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=34.5
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHhccccCCChhhhccc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAAY 142 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rSkSCP~CR~~l 142 (144)
+..|-.|....++-++ .. |.|..|..|.--+|...||||-.++
T Consensus 7 ~~~~~~~~~~~~~~~~---------~p--CgH~I~~~~f~~~rYngCPfC~~~~ 49 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTV---------LP--CGHLICDNCFPGERYNGCPFCGTPF 49 (55)
T ss_pred ceeEEEcccccccccc---------cc--ccceeeccccChhhccCCCCCCCcc
Confidence 4566677766555555 45 9999999999999999999998765
No 47
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.035 Score=45.53 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=33.3
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhcc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAA 141 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~ 141 (144)
..+|+||-|..... -..+-| +++. |+|++|-.|+- ..-+..|||||.+
T Consensus 3 ~~~c~~c~~~~s~~-~~~~~p--~~l~--c~h~~c~~c~~~l~~~~~i~cpfcR~~ 53 (296)
T KOG4185|consen 3 FPECEICNEDYSSE-DGDHIP--RVLK--CGHTICQNCASKLLGNSRILCPFCRET 53 (296)
T ss_pred CCceeecCcccccc-CcccCC--cccc--cCceehHhHHHHHhcCceeeccCCCCc
Confidence 46899999874432 211222 3456 99999999998 3345778999986
No 48
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.17 E-value=0.055 Score=49.37 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=36.1
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc----ccCCChhhhcc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA----RSQSCLFAVAA 141 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~----rSkSCP~CR~~ 141 (144)
+-+.+.++-|-||.+..+-..+ .+ |+|-+|--|--+- ..++||+||..
T Consensus 55 ddtDEen~~C~ICA~~~TYs~~---------~P--C~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYSAR---------YP--CGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccccccceeEEecCCceEEEe---------cc--CCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3445667899999998754433 24 9999999997644 45999999964
No 49
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.051 Score=51.17 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=38.2
Q ss_pred cCCCcccccccccccc-------ceecc-cCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 86 LDRNDECGICMENCTK-------MVTRK-HFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k-------~V~~k-~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
.++...|.|||..+.- ++... +.+--.+.+ |+|.|=-.|..+|- +--||.||.+|.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP--C~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP--CHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccc--hHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 5678899999976421 12211 111113556 99999999999884 458999999874
No 50
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.93 E-value=0.07 Score=45.17 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=23.8
Q ss_pred CCCCCCCchhhhhHHhccccCCChhhhcccc
Q 032271 113 IPDKYFSHNGLIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 113 Lpn~~C~H~fCl~Cir~~rSkSCP~CR~~l~ 143 (144)
|.+ |.|.||..|..-.--..||.|+.+++
T Consensus 20 LTa--C~HvfC~~C~k~~~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 20 LTA--CRHVFCEPCLKASSPDVCPLCKKSIR 48 (233)
T ss_pred eee--chhhhhhhhcccCCccccccccceee
Confidence 578 99999999997443349999999865
No 51
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.75 E-value=0.11 Score=41.41 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=38.7
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHh-cccc----CCChhhhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR-NARS----QSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-~~rS----kSCP~CR~~l~ 143 (144)
.--||.||-|... +++|-- ||.=|+-+.|-.||. -|.- --||.|..++|
T Consensus 79 ~lYeCnIC~etS~----ee~FLK---PneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSA----EERFLK---PNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccc----hhhcCC---cccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 5579999999944 444444 777799999999999 5753 46999999987
No 52
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.065 Score=48.09 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=24.3
Q ss_pred CCCCCCCCchhhhhHHhccccCCChhhhcccc
Q 032271 112 RIPDKYFSHNGLIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 112 ~Lpn~~C~H~fCl~Cir~~rSkSCP~CR~~l~ 143 (144)
|+-. |.|.||++|-|.---|+||-|-..+.
T Consensus 105 RmIP--CkHvFCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 105 RMIP--CKHVFCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred cccc--cchhhhhhhhhcCccccCcCcccHHH
Confidence 4455 99999999999666799999977654
No 53
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=91.61 E-value=0.13 Score=37.67 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=21.9
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhccccC
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYRE 144 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~~ 144 (144)
...|-||-+.+--.+....|-. --+ |+-..|-.||. +-.+|+||.|+..++|
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVA--C~e--C~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVA--CHE--CAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S---SS--S-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEE--Ecc--cCCccchhHHHHHhhcCcccccccCCCccc
Confidence 5789999998654444333332 344 88899999998 5567999999998875
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.29 E-value=0.084 Score=48.70 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=42.5
Q ss_pred ccccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh----ccccCCChhhhc
Q 032271 81 LSDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR----NARSQSCLFAVA 140 (144)
Q Consensus 81 ~s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir----~~rSkSCP~CR~ 140 (144)
.++.+.+-+.-||.|-|. +=.|...++.|| |.|.|=.+|.. +..-+|||-||.
T Consensus 357 a~~~~~e~~L~Cg~CGe~----~Glk~e~LqALp---CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 357 AHECVEETELYCGLCGES----IGLKNERLQALP---CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHHHHHHhhhhhhhhhh----hcCCcccccccc---hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 455566667899999998 444566777777 99999999998 777899999993
No 55
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.25 E-value=0.19 Score=33.40 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=20.1
Q ss_pred ccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 92 CGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 92 CgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
|.+|+|.... ...+.+| =.|++-.|.-|+.+.. ...||-||.+++
T Consensus 1 cp~C~e~~d~------~d~~~~P-C~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDE------TDKDFYP-CECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--C------CCTT--S-STTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccccc------CCCcccc-CcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 6789988522 1222234 3599999999998544 578999999874
No 56
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=0.14 Score=45.90 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=34.6
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchh-hhhHHhccccCCChhhhcccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNG-LIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~f-Cl~Cir~~rSkSCP~CR~~l~ 143 (144)
..+++..+-|-||.+.-+..++ -+ |+|.- |.-|.++- -+||.||.+++
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~f---------vp--cGh~ccct~cs~~l--~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVF---------VP--CGHVCCCTLCSKHL--PQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceee---------ec--CCcEEEchHHHhhC--CCCchhHHHHH
Confidence 4456778899999988766677 34 99984 44555432 33999999875
No 57
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.73 E-value=0.23 Score=47.17 Aligned_cols=42 Identities=12% Similarity=0.332 Sum_probs=31.8
Q ss_pred ccccccccccccceecccCccCCCCCCCCCchhhhhHHh----ccccCCChhhhcccc
Q 032271 90 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR----NARSQSCLFAVAAYR 143 (144)
Q Consensus 90 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir----~~rSkSCP~CR~~l~ 143 (144)
..|.||++ ....+. .. |.|.+|..|+- ....+.||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~i---------t~--c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFI---------TR--CGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-ccccee---------ec--ccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 333333 45 99999999998 223457999998664
No 58
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.90 E-value=0.16 Score=51.23 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=37.9
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc----ccCCChhhhccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA----RSQSCLFAVAAY 142 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~----rSkSCP~CR~~l 142 (144)
..+.|.-+||.||..+... |- +.+|..+=|. |.|-|=-.|.=+| .+..||.||..+
T Consensus 1463 ~~~fsG~eECaICYsvL~~-vd-r~lPskrC~T--CknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDM-VD-RSLPSKRCAT--CKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hhhcCCcchhhHHHHHHHH-Hh-ccCCccccch--hhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 4456778999999987432 32 2233333444 6777888888877 347899999765
No 59
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=0.27 Score=45.04 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=40.4
Q ss_pred ccccccc--CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh--ccccCCChhhhccc
Q 032271 80 KLSDKDL--DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NARSQSCLFAVAAY 142 (144)
Q Consensus 80 k~s~id~--~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~rSkSCP~CR~~l 142 (144)
.++++++ ++|..|.||.-.-...|+ -+ |.|--|-.||. -..+|-|=||..+.
T Consensus 411 ~~~~~~lp~sEd~lCpICyA~pi~Avf---------~P--C~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 411 ESFNKDLPDSEDNLCPICYAGPINAVF---------AP--CSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred HhhcCCCCCcccccCcceecccchhhc---------cC--CCCchHHHHHHHHHhcCCeeeEeccee
Confidence 4667776 678999999965444455 34 99999999998 45789999998764
No 60
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=86.99 E-value=0.34 Score=35.99 Aligned_cols=26 Identities=8% Similarity=-0.067 Sum_probs=22.0
Q ss_pred CCCchhhhhHHhcccc--CCChhhhccc
Q 032271 117 YFSHNGLIMNYRNARS--QSCLFAVAAY 142 (144)
Q Consensus 117 ~C~H~fCl~Cir~~rS--kSCP~CR~~l 142 (144)
.|||+|=.-||.+|-+ .-||.+|.+.
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 3999999999998854 6799999764
No 61
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.51 E-value=0.21 Score=49.46 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=24.1
Q ss_pred CCCCCCchhhhhHHhccc--cCCChhhhcccc
Q 032271 114 PDKYFSHNGLIMNYRNAR--SQSCLFAVAAYR 143 (144)
Q Consensus 114 pn~~C~H~fCl~Cir~~r--SkSCP~CR~~l~ 143 (144)
..++|.|.||-.|+-.|- -++||.||..|-
T Consensus 140 ~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 140 SEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred cccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 456799999999988773 489999998764
No 62
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.38 E-value=0.34 Score=41.93 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=34.5
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCC--CchhhhhHHhccccCCChhhhccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYF--SHNGLIMNYRNARSQSCLFAVAAY 142 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C--~H~fCl~Cir~~rSkSCP~CR~~l 142 (144)
..+=.+|.||-+..+..++ - | +|..|-+|-+ ..+.-||+||.++
T Consensus 45 ~~~lleCPvC~~~l~~Pi~----------Q--C~nGHlaCssC~~-~~~~~CP~Cr~~~ 90 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIF----------Q--CDNGHLACSSCRT-KVSNKCPTCRLPI 90 (299)
T ss_pred chhhccCchhhccCcccce----------e--cCCCcEehhhhhh-hhcccCCcccccc
Confidence 3345799999999777555 2 6 5999999985 4678899999876
No 63
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=0.35 Score=42.78 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=32.3
Q ss_pred cccccccccccceecccCccCCCCCCCCCchhhhhHHh--ccccCCChhhhcc
Q 032271 91 ECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NARSQSCLFAVAA 141 (144)
Q Consensus 91 eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~rSkSCP~CR~~ 141 (144)
.|.||-+.-...|. .+ |.|.||-.|.- ..++.-|+.|-..
T Consensus 243 ~c~icr~~f~~pVv---------t~--c~h~fc~~ca~~~~qk~~~c~vC~~~ 284 (313)
T KOG1813|consen 243 KCFICRKYFYRPVV---------TK--CGHYFCEVCALKPYQKGEKCYVCSQQ 284 (313)
T ss_pred cccccccccccchh---------hc--CCceeehhhhccccccCCcceecccc
Confidence 39999988766666 57 99999999987 4466889999654
No 64
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=85.25 E-value=0.27 Score=33.28 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=19.1
Q ss_pred CchhhhhHHh--ccccCCChhhhcccc
Q 032271 119 SHNGLIMNYR--NARSQSCLFAVAAYR 143 (144)
Q Consensus 119 ~H~fCl~Cir--~~rSkSCP~CR~~l~ 143 (144)
+|..|++|.. ..+|.-||+|-.+|.
T Consensus 20 dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 20 DHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp S-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred chhHHHHHHHHHhccccCCCcccCcCc
Confidence 5999999999 678899999988764
No 65
>PLN02400 cellulose synthase
Probab=85.18 E-value=0.32 Score=48.77 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=39.6
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhccccC
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYRE 144 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~~ 144 (144)
+.--....|-||-+.+--.+....|-. =-. |.-..|-.||. +-.+|+||+|+..+||
T Consensus 31 ~~~~~gqiCqICGD~VG~t~dGe~FVA--C~e--CaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 31 LKNLNGQICQICGDDVGVTETGDVFVA--CNE--CAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ccccCCceeeecccccCcCCCCCEEEE--Ecc--CCCccccchhheecccCCccCcccCCcccc
Confidence 333445699999988755444322222 223 66669999998 5568999999999986
No 66
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=84.66 E-value=0.54 Score=40.30 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=28.2
Q ss_pred cccccccccccceecccCccCCCCCCCCCchhhhhHHh-cc-ccCCChhhhc
Q 032271 91 ECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR-NA-RSQSCLFAVA 140 (144)
Q Consensus 91 eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-~~-rSkSCP~CR~ 140 (144)
.||||-+--...|. .+ |+|.||-.|.- .. ..-.|-+|-.
T Consensus 198 ~C~iCKkdy~spvv---------t~--CGH~FC~~Cai~~y~kg~~C~~Cgk 238 (259)
T COG5152 198 LCGICKKDYESPVV---------TE--CGHSFCSLCAIRKYQKGDECGVCGK 238 (259)
T ss_pred eehhchhhccchhh---------hh--cchhHHHHHHHHHhccCCcceecch
Confidence 79999987544444 47 99999999976 22 3356777754
No 67
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=84.25 E-value=0.37 Score=48.39 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=36.9
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhccccC
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYRE 144 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~~ 144 (144)
....|-||-+.+--.+....|=. =- -|+-..|-.||. +-.+|+||+|...+||
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVA--C~--eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVA--CD--VCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEE--ec--cCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 35699999988644443222211 12 266669999998 5568999999999886
No 68
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=84.04 E-value=0.86 Score=28.86 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=19.6
Q ss_pred ccccccccccceecccCccCCCCCCCCC---chhhhhHHhccccC-CChhh
Q 032271 92 CGICMENCTKMVTRKHFSLERIPDKYFS---HNGLIMNYRNARSQ-SCLFA 138 (144)
Q Consensus 92 CgICME~~~k~V~~k~~~~~~Lpn~~C~---H~fCl~Cir~~rSk-SCP~C 138 (144)
|-+|.|+++.-+. =+|..|+ |..|+.=|-+.++. .||-|
T Consensus 1 C~~C~~iv~~G~~--------C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQR--------CSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE---------SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeecc--------CCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6688888766655 1111133 77888877765555 49987
No 69
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.92 E-value=0.47 Score=42.02 Aligned_cols=46 Identities=15% Similarity=0.357 Sum_probs=31.1
Q ss_pred Cccccccccccccce-----ecccCccCCCCCCCCCchhhhhHHhcc----ccCCChhhhc
Q 032271 89 NDECGICMENCTKMV-----TRKHFSLERIPDKYFSHNGLIMNYRNA----RSQSCLFAVA 140 (144)
Q Consensus 89 e~eCgICME~~~k~V-----~~k~~~~~~Lpn~~C~H~fCl~Cir~~----rSkSCP~CR~ 140 (144)
|..|-+|-......+ .+|... | . |||.|=--|||-| +.|.||.|..
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~---L-s--CnHvFHEfCIrGWcivGKkqtCPYCKe 278 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYK---L-S--CNHVFHEFCIRGWCIVGKKQTCPYCKE 278 (328)
T ss_pred cchhHhhcchheeecchhhhhhhhee---e-e--cccchHHHhhhhheeecCCCCCchHHH
Confidence 567888865432222 222222 2 4 9999999999977 6799999964
No 70
>PLN02436 cellulose synthase A
Probab=83.89 E-value=0.41 Score=48.11 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=39.0
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhccccC
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYRE 144 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~~ 144 (144)
++-.....|-||-+.+--.+....|-. =.. |+-..|-.||. +-.+|+||+|...++|
T Consensus 31 ~~~~~~~iCqICGD~Vg~t~dGe~FVA--Cn~--C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 31 VQELSGQTCQICGDEIELTVDGEPFVA--CNE--CAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred ccccCCccccccccccCcCCCCCEEEe--ecc--CCCccccchhhhhhhcCCccCcccCCchhh
Confidence 344445699999988644443222221 122 66669999998 5567999999999885
No 71
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.72 E-value=0.71 Score=40.62 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=35.9
Q ss_pred cccccccCCCccccccccccc-cceecccCccCCCCCCCCCchhhhhHHhc---c-ccCCChhhhcc
Q 032271 80 KLSDKDLDRNDECGICMENCT-KMVTRKHFSLERIPDKYFSHNGLIMNYRN---A-RSQSCLFAVAA 141 (144)
Q Consensus 80 k~s~id~~~e~eCgICME~~~-k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~---~-rSkSCP~CR~~ 141 (144)
+.+.-..+.+.||.+|-|.-+ ..+. .+|.|.+|--|++. | .|-.||-|-.+
T Consensus 230 ~~sss~~t~~~~C~~Cg~~PtiP~~~-----------~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~ 285 (298)
T KOG2879|consen 230 KFSSSTGTSDTECPVCGEPPTIPHVI-----------GKCGHIYCYYCIATSRLWDASFTCPLCGEN 285 (298)
T ss_pred CcccccccCCceeeccCCCCCCCeee-----------ccccceeehhhhhhhhcchhhcccCccCCC
Confidence 344555677899999998732 2222 23999999999993 3 25789999643
No 72
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=83.49 E-value=0.3 Score=43.46 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=33.2
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh--ccccCCChhhhcccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NARSQSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~rSkSCP~CR~~l~ 143 (144)
+-.-..|++|---..+--+ ++. |-|+||-+||= -..++.||.|...+.
T Consensus 12 ~n~~itC~LC~GYliDATT--------I~e--CLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATT--------ITE--CLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred cccceehhhccceeecchh--------HHH--HHHHHHHHHHHHHHHHhccCCccceecc
Confidence 3346789999753222111 245 99999999998 235899999987653
No 73
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.35 E-value=0.76 Score=40.78 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=25.4
Q ss_pred cCCCcccccccccccc-ceecccCccCCCCCCCCCchhhhhHHh
Q 032271 86 LDRNDECGICMENCTK-MVTRKHFSLERIPDKYFSHNGLIMNYR 128 (144)
Q Consensus 86 ~~~e~eCgICME~~~k-~V~~k~~~~~~Lpn~~C~H~fCl~Cir 128 (144)
...+.+||||++.... ++. .. |+|.||..|++
T Consensus 67 ~~~~~~c~ic~~~~~~~~~~---------~~--c~H~~c~~cw~ 99 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDGEIIG---------LG--CGHPFCPPCWT 99 (444)
T ss_pred CCccccCCcccCCCcchhhh---------cC--CCcHHHHHHHH
Confidence 3557999999998643 333 56 99999999999
No 74
>PLN02189 cellulose synthase
Probab=80.96 E-value=0.73 Score=46.18 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=38.0
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhccccC
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYRE 144 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~~ 144 (144)
-.....|-||-+.+.-.+. .+++-.=.. |+-..|-.||. +-.+|+||+|+..++|
T Consensus 31 ~~~~~~C~iCgd~vg~~~~--g~~fvaC~~--C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVD--GDLFVACNE--CGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cccCccccccccccCcCCC--CCEEEeecc--CCCccccchhhhhhhcCCccCcccCCchhh
Confidence 3345699999988643332 222212233 77789999998 5567999999999885
No 75
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=80.83 E-value=0.56 Score=31.36 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=24.8
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHhc----cccCCChh
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN----ARSQSCLF 137 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~----~rSkSCP~ 137 (144)
..-|.|.+....+.|. ++.|+|+|--..|.. .++..||.
T Consensus 11 ~~~CPiT~~~~~~PV~----------s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVK----------SKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSEEE----------ESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCCcC----------cCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 5779999987777666 356999999999983 34677997
No 76
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=80.22 E-value=0.62 Score=46.69 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhccccC
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYRE 144 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~~ 144 (144)
....|-||-+.+--.+....|-. = +-|+-..|-.||. +-.+|+||+|...++|
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVA--C--~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVA--C--HVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEE--e--ccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 35789999998654444222221 1 2366669999998 5678999999999875
No 77
>PF08403 AA_permease_N: Amino acid permease N-terminal; InterPro: IPR013612 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins appear to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found to the N terminus of the amino acid permease domain (IPR004841 from INTERPRO) in metazoan Na-K-Cl cotransporters.
Probab=78.24 E-value=0.9 Score=32.48 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=12.9
Q ss_pred hhhchHhhhhhcccchh
Q 032271 42 IIYPSLRQLESEFSELE 58 (144)
Q Consensus 42 vI~PsL~qL~~~~~d~e 58 (144)
...|||++||..+.+.+
T Consensus 38 ~~RPSL~~Lh~~~~~~~ 54 (74)
T PF08403_consen 38 KSRPSLDELHSQLEKDE 54 (74)
T ss_pred cCCCCHHHHHHHhhcCC
Confidence 46899999997766433
No 78
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=77.45 E-value=1.8 Score=39.82 Aligned_cols=46 Identities=26% Similarity=0.428 Sum_probs=30.0
Q ss_pred Cccccccccccccceecc-cCccCCCCCCCCCchhhhhHHhccc---cCCChhhhccc
Q 032271 89 NDECGICMENCTKMVTRK-HFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAY 142 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k-~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l 142 (144)
|+-|..|||... +..| .|| -+|+--.|-=||.+-| ..-||-||.-+
T Consensus 14 ed~cplcie~md--itdknf~p------c~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 14 EDYCPLCIEPMD--ITDKNFFP------CPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cccCcccccccc--cccCCccc------CCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 566999999742 1122 222 2488777777776544 46899999765
No 79
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.16 E-value=1.4 Score=40.63 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=22.8
Q ss_pred CCCcccccccccccc---ceecccCccCCCCCCCCCchhhhhHHh
Q 032271 87 DRNDECGICMENCTK---MVTRKHFSLERIPDKYFSHNGLIMNYR 128 (144)
Q Consensus 87 ~~e~eCgICME~~~k---~V~~k~~~~~~Lpn~~C~H~fCl~Cir 128 (144)
.+--.|.||||.... +++ .+ |.|.||.+|..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~---------lp--C~Hv~Ck~C~k 215 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKF---------LP--CSHVFCKSCLK 215 (445)
T ss_pred hhcccceeeehhhcCcceeee---------cc--cchHHHHHHHH
Confidence 345689999987433 333 34 99999999987
No 80
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.85 E-value=0.96 Score=40.62 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=31.8
Q ss_pred ccccc--cccccceecc-------cCccCC---CCCCCCCchhhhhHHhcc---------------ccCCChhhhccc
Q 032271 92 CGICM--ENCTKMVTRK-------HFSLER---IPDKYFSHNGLIMNYRNA---------------RSQSCLFAVAAY 142 (144)
Q Consensus 92 CgICM--E~~~k~V~~k-------~~~~~~---Lpn~~C~H~fCl~Cir~~---------------rSkSCP~CR~~l 142 (144)
|=-|| |+..|. -+. .++..+ -+|-+|.-.-|-.|..+| .|-.||.||+.+
T Consensus 288 cfac~~~e~~~ki-~~~c~~~~~~~~~~~~ga~c~nc~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 288 CFACGTEENMVKI-ERSCDGQEQRVFFHDIGAPCENCICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred hHhhccCCCchhh-hhcccchhhcccccccCCcccccccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 99999 444442 221 222222 456677888899998754 246799999864
No 81
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.78 E-value=1.1 Score=43.14 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=32.5
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHh---cc--ccCCChhhhcc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NA--RSQSCLFAVAA 141 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~--rSkSCP~CR~~ 141 (144)
+.||+||.+.+...++ .. |+|.||.-|.. .| ..+.||.|+..
T Consensus 21 ~lEc~ic~~~~~~p~~---------~k--c~~~~l~~~~n~~f~~~~~~~~~~lc~~~ 67 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSL---------LK--CDHIFLKFCLNKLFESKKGPKQCALCKSD 67 (684)
T ss_pred hccCCceeEEeeccch---------hh--hhHHHHhhhhhceeeccCccccchhhhhh
Confidence 6899999999665544 45 99999999998 22 25789999843
No 82
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=75.74 E-value=0.98 Score=35.62 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=26.4
Q ss_pred CCcccccccccccc--ceecccCccCCCCCCCCCchhhhhHHhccc
Q 032271 88 RNDECGICMENCTK--MVTRKHFSLERIPDKYFSHNGLIMNYRNAR 131 (144)
Q Consensus 88 ~e~eCgICME~~~k--~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r 131 (144)
...||.||.+.... .|.. -+.+-.-| =-|.||-.|+.+|+
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~--vt~~g~ln--LEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVY--VTDGGTLN--LEKMFCADCDKRWR 66 (134)
T ss_pred cCeeehhhhhhhhcCCCEEE--EecCCeeh--HHHHHHHHHHHHHH
Confidence 38999999998644 3331 11222234 45889999999993
No 83
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.24 E-value=1.1 Score=36.69 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=29.6
Q ss_pred ccccccccccceecccCccCCCCCCCCCch-hhhhHHhccccCCChhhhccc
Q 032271 92 CGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAY 142 (144)
Q Consensus 92 CgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~rSkSCP~CR~~l 142 (144)
|-.|-|...-+++ -+ |+|. +|-.|-.. -+.||.|+..-
T Consensus 161 Cr~C~~~~~~Vll---------lP--CrHl~lC~~C~~~--~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLL---------LP--CRHLCLCGICDES--LRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEe---------ec--ccceEeccccccc--CccCCCCcChh
Confidence 8888888766555 33 9998 99999864 56799999764
No 84
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=74.50 E-value=2 Score=37.89 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=24.5
Q ss_pred CCCCCCchhhhhHHh---ccccCCChhhhccccC
Q 032271 114 PDKYFSHNGLIMNYR---NARSQSCLFAVAAYRE 144 (144)
Q Consensus 114 pn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~~ 144 (144)
.| +|.|.+|-+|.- -..+-.||.|-+.|++
T Consensus 20 in-~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 20 IN-ECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred ec-cccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 44 699999999998 3456889999988763
No 85
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.15 E-value=2.1 Score=39.63 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=29.9
Q ss_pred ccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc----c-CCChhhhcc
Q 032271 90 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR----S-QSCLFAVAA 141 (144)
Q Consensus 90 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r----S-kSCP~CR~~ 141 (144)
-+|.||-+- +.+. ..++.+.- |+|.|=..|...|- | ..||+|+..
T Consensus 5 A~C~Ic~d~--~p~~---~~l~~i~~--cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDG--RPND---HELGPIGT--CGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEeccC--Cccc---cccccccc--hhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 589999432 1111 12223345 99999999999773 4 689999943
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=72.55 E-value=4.3 Score=36.31 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=35.4
Q ss_pred ccCCCccccccccccccceecccC------c--cCCCCC---CCCCchhhhhHHhcc---------------ccCCChhh
Q 032271 85 DLDRNDECGICMENCTKMVTRKHF------S--LERIPD---KYFSHNGLIMNYRNA---------------RSQSCLFA 138 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~------~--~~~Lpn---~~C~H~fCl~Cir~~---------------rSkSCP~C 138 (144)
..++.+-|==||.....+.+.|.= + +.-.+. =||.-.-|+.|..+| .+-.||.|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 345668899999766555555432 1 111222 234445589999866 12469999
Q ss_pred hccc
Q 032271 139 VAAY 142 (144)
Q Consensus 139 R~~l 142 (144)
|+.+
T Consensus 347 Ra~F 350 (358)
T PF10272_consen 347 RAKF 350 (358)
T ss_pred cccc
Confidence 9874
No 87
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=68.80 E-value=1.5 Score=32.34 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=21.4
Q ss_pred CCCchhhhhHHhccc-----cCCChhhhccc
Q 032271 117 YFSHNGLIMNYRNAR-----SQSCLFAVAAY 142 (144)
Q Consensus 117 ~C~H~fCl~Cir~~r-----SkSCP~CR~~l 142 (144)
+|.|+|=.-||.+|- ...||.||...
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 589999999999773 25699999875
No 88
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=68.74 E-value=5.8 Score=28.14 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=27.7
Q ss_pred ceeeEEEE--EeeCCCCcCchhhhhchHhhhHHhhhchHh
Q 032271 11 TKLFVNVQ--VYVDGMPALSSKERKATLREFYAIIYPSLR 48 (144)
Q Consensus 11 ~~~iliyk--vy~dG~~~~s~~eRkAtireFY~vI~PsL~ 48 (144)
-+|+.+|+ ...|=.+.||.. -.|+||+..||-|.
T Consensus 5 l~RvF~~~gi~L~DP~p~~spe----~V~dfYs~~YPeLt 40 (66)
T TIGR03738 5 LSRVFTYNGVRLADPSPAMSPE----QVRDFYSAQYPELL 40 (66)
T ss_pred EEEEEEECCeEcCCCCCCCCHH----HHHHHHhccCchhe
Confidence 36788886 556888899986 48999999999986
No 89
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=67.61 E-value=5.8 Score=27.12 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=28.8
Q ss_pred hhcccccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh
Q 032271 78 RRKLSDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR 128 (144)
Q Consensus 78 ~~k~s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir 128 (144)
+.+...+.++.+..|.+|-......++ .. -| |+|.+-..|++
T Consensus 67 ~~~~~~v~i~~~~~C~vC~k~l~~~~f----~~--~p---~~~v~H~~C~~ 108 (109)
T PF10367_consen 67 KLRSRSVVITESTKCSVCGKPLGNSVF----VV--FP---CGHVVHYSCIK 108 (109)
T ss_pred hhcCceEEECCCCCccCcCCcCCCceE----EE--eC---CCeEEeccccc
Confidence 345567888889999999987543322 11 13 77888888875
No 90
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=64.71 E-value=7.4 Score=31.75 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=11.3
Q ss_pred Ccccccccccccccee
Q 032271 89 NDECGICMENCTKMVT 104 (144)
Q Consensus 89 e~eCgICME~~~k~V~ 104 (144)
|..|.||||.--.-||
T Consensus 2 d~~CpICme~PHNAVL 17 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVL 17 (162)
T ss_pred CccCceeccCCCceEE
Confidence 5679999997533344
No 91
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=63.43 E-value=3.2 Score=41.38 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCCcccccccccc--ccceecccCccCCCCCCCCCchhhhhHHhcccc---------CCChhhhcc
Q 032271 87 DRNDECGICMENC--TKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS---------QSCLFAVAA 141 (144)
Q Consensus 87 ~~e~eCgICME~~--~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS---------kSCP~CR~~ 141 (144)
.+--||-||.|.+ +..|+ +=+.|-|.|=|.||+.|-. --||.|+-.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~W---------SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVW---------SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCce---------ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 3457999999975 44455 4455999999999998843 249999843
No 92
>PLN02195 cellulose synthase A
Probab=60.98 E-value=4.4 Score=40.67 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=35.9
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~ 143 (144)
|....|-||-+.+.-.+... ++-.= +-|+-..|-.||. +-.+|+||+|...+|
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~--~fvaC--~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGE--AFVAC--HECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCCCCC--eEEEe--ccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 34568999998653333221 22112 2377889999998 556799999999887
No 93
>PF04641 Rtf2: Rtf2 RING-finger
Probab=60.29 E-value=4.1 Score=33.77 Aligned_cols=51 Identities=6% Similarity=0.049 Sum_probs=35.2
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc-cCCChhhhcccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR-SQSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r-SkSCP~CR~~l~ 143 (144)
....-.|+|.....+ ....+-.|-+ |+|.|+-+++..-. +..||.|-.+|.
T Consensus 110 ~~~~~~CPvt~~~~~-----~~~~fv~l~~--cG~V~s~~alke~k~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFN-----GKHKFVYLRP--CGCVFSEKALKELKKSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccC-----CceeEEEEcC--CCCEeeHHHHHhhcccccccccCCccc
Confidence 344567888875432 1222222555 99999999999666 778999988764
No 94
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=56.83 E-value=5.9 Score=42.79 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=35.6
Q ss_pred ccccCCCccccccccc-cccceecccCccCCCCCCCCCchhhhhHHh-----ccc-------cCCChhhhcccc
Q 032271 83 DKDLDRNDECGICMEN-CTKMVTRKHFSLERIPDKYFSHNGLIMNYR-----NAR-------SQSCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~-~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-----~~r-------SkSCP~CR~~l~ 143 (144)
+-..+.|+.|-||.-. .... |. |-.+ |+|.|=+.|-| +|- --|||.|...+.
T Consensus 3480 ~tkQD~DDmCmICFTE~L~AA------P~-IqL~--C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3480 ATKQDADDMCMICFTEALSAA------PA-IQLD--CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hhhcccCceEEEEehhhhCCC------cc-eecC--CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4456778999999843 2110 11 1246 99999999998 563 369999987653
No 95
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.61 E-value=8 Score=32.84 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=33.9
Q ss_pred hchhhhhhhhhHHHHhhcccccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-cc---------
Q 032271 63 RDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-RS--------- 132 (144)
Q Consensus 63 ~~~c~e~~~rkd~E~~~k~s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-rS--------- 132 (144)
-+.|+.++-.+|.| -..||||.--....-. +..--.|-.|+..|=--|...| |+
T Consensus 151 ~df~a~a~Lekdd~------------~~~cgicyayqldGTi----pDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFd 214 (234)
T KOG3268|consen 151 CDFCAAAFLEKDDE------------LGACGICYAYQLDGTI----PDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFD 214 (234)
T ss_pred eCccHHHhcCcchh------------hhcccceeeeecCCcc----ccccccccccCCcHHHHHHHHHHHHHhhccceee
Confidence 44566555554433 4579999865332222 1111123336655545555555 21
Q ss_pred ---CCChhhhccc
Q 032271 133 ---QSCLFAVAAY 142 (144)
Q Consensus 133 ---kSCP~CR~~l 142 (144)
..||.|-.++
T Consensus 215 iiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 215 IIFGECPYCSDPI 227 (234)
T ss_pred eeeccCCCCCCcc
Confidence 4699998765
No 96
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=52.21 E-value=10 Score=25.35 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=15.7
Q ss_pred CCCCCCchhhhhHHh--ccccCCChhhh
Q 032271 114 PDKYFSHNGLIMNYR--NARSQSCLFAV 139 (144)
Q Consensus 114 pn~~C~H~fCl~Cir--~~rSkSCP~CR 139 (144)
|. |.+.||+.|=- +-.-.+||-|-
T Consensus 25 ~~--C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 25 PK--CKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TT--TT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CC--CCCccccCcChhhhccccCCcCCC
Confidence 67 99999999977 66668899883
No 97
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=48.59 E-value=15 Score=23.64 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=12.6
Q ss_pred chhhhhHHhccc----cCCChhhh
Q 032271 120 HNGLIMNYRNAR----SQSCLFAV 139 (144)
Q Consensus 120 H~fCl~Cir~~r----SkSCP~CR 139 (144)
|.+=..|..+|. ..+||+|.
T Consensus 26 ~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 26 KYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred hHHHHHHHHHHHHHcCCCcCCCCC
Confidence 444455666664 45899984
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=48.40 E-value=7.4 Score=40.44 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=34.9
Q ss_pred ccccCCCccccccccccc--cceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhc
Q 032271 83 DKDLDRNDECGICMENCT--KMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVA 140 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~--k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~ 140 (144)
-.++++-..|.||.+.+- ..+. . |.|.+|-.|.--| ++..||.|..
T Consensus 1147 ~~~~~~~~~c~ic~dil~~~~~I~----------~--cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1147 LMNLSGHFVCEICLDILRNQGGIA----------G--CGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred HHHhhcccchHHHHHHHHhcCCee----------e--echhHhhhHHHHHHHHhccCcchhh
Confidence 345666779999998752 3333 5 9999999999955 6788999863
No 99
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.51 E-value=8.4 Score=34.18 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=21.9
Q ss_pred CCccccccc-cccccceecccCccCCCCCCCCCchhhhhHHh
Q 032271 88 RNDECGICM-ENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR 128 (144)
Q Consensus 88 ~e~eCgICM-E~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir 128 (144)
...+|+||+ |.... +.-|. ... |.|-||..|..
T Consensus 145 ~~~~C~iC~~e~~~~---~~~f~---~~~--C~H~fC~~C~k 178 (384)
T KOG1812|consen 145 PKEECGICFVEDPEA---EDMFS---VLK--CGHRFCKDCVK 178 (384)
T ss_pred ccccCccCccccccH---hhhHH---Hhc--ccchhhhHHhH
Confidence 468999999 55211 01111 145 99999999998
No 100
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=45.61 E-value=11 Score=34.33 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=27.2
Q ss_pred ccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc---CCChhhhc
Q 032271 90 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS---QSCLFAVA 140 (144)
Q Consensus 90 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS---kSCP~CR~ 140 (144)
.-|..|--.....+- -|- |+|.||-.||.++-- .-||.|-.
T Consensus 275 LkCplc~~Llrnp~k--------T~c--C~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMK--------TPC--CGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCccc--------Ccc--ccchHHHHHHhhhhhhccccCCCccc
Confidence 678877644322111 155 999999999996532 56999954
No 101
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=42.75 E-value=13 Score=28.95 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=19.8
Q ss_pred CCchhhhhHHhcccc--CCChhhhc
Q 032271 118 FSHNGLIMNYRNARS--QSCLFAVA 140 (144)
Q Consensus 118 C~H~fCl~Cir~~rS--kSCP~CR~ 140 (144)
|||+|=.-||.+|-+ +-||.|-.
T Consensus 81 CNHaFH~hCisrWlktr~vCPLdn~ 105 (114)
T KOG2930|consen 81 CNHAFHFHCISRWLKTRNVCPLDNK 105 (114)
T ss_pred cchHHHHHHHHHHHhhcCcCCCcCc
Confidence 999999999998854 68999864
No 102
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.49 E-value=7.5 Score=31.93 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=19.2
Q ss_pred CCchhhhhHHhcc---ccCCChhhhcc
Q 032271 118 FSHNGLIMNYRNA---RSQSCLFAVAA 141 (144)
Q Consensus 118 C~H~fCl~Cir~~---rSkSCP~CR~~ 141 (144)
|.|+.|..|+..- ..-.|||||..
T Consensus 239 c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 239 EGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHhcchHHHHHHhhhcCCcccce
Confidence 9999999999922 22689999863
No 103
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=39.18 E-value=42 Score=23.47 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=27.5
Q ss_pred eeeEEEE--EeeCCCCcCchhhhhchHhhhHHhhhchHhhhhhcccc
Q 032271 12 KLFVNVQ--VYVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSE 56 (144)
Q Consensus 12 ~~iliyk--vy~dG~~~~s~~eRkAtireFY~vI~PsL~qL~~~~~d 56 (144)
+|+.+|. ...|=.|.||.. -.++||+..||-|. ...+..
T Consensus 7 ~R~F~~~g~~L~DP~p~~spe----~V~~~ya~~YPeL~--tA~v~g 47 (65)
T PF14454_consen 7 TRVFRYNGITLPDPNPSLSPE----EVRDFYAAQYPELT--TAEVEG 47 (65)
T ss_pred EEEEEECCEECCCCCCCCCHH----HHHHHHhhhChhhh--eeeecC
Confidence 4666663 445667888886 48899999999987 333443
No 104
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=39.12 E-value=9.5 Score=23.89 Aligned_cols=17 Identities=6% Similarity=-0.189 Sum_probs=13.8
Q ss_pred CCCCCCCchhhhhHHhccc
Q 032271 113 IPDKYFSHNGLIMNYRNAR 131 (144)
Q Consensus 113 Lpn~~C~H~fCl~Cir~~r 131 (144)
-|. |+|.||..|-..|.
T Consensus 43 C~~--C~~~fC~~C~~~~H 59 (64)
T smart00647 43 CPK--CGFSFCFRCKVPWH 59 (64)
T ss_pred CCC--CCCeECCCCCCcCC
Confidence 356 99999999988664
No 105
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=38.63 E-value=15 Score=23.78 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=13.1
Q ss_pred hhhhHHhccccCCCh
Q 032271 122 GLIMNYRNARSQSCL 136 (144)
Q Consensus 122 fCl~Cir~~rSkSCP 136 (144)
-|..|||.-|+.||-
T Consensus 9 aC~~CirGHR~s~C~ 23 (39)
T smart00412 9 ACESCIRGHRSSTCN 23 (39)
T ss_pred cCHHHHCcCccCCcc
Confidence 589999999999884
No 106
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=37.29 E-value=17 Score=31.24 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=13.8
Q ss_pred hhHHh-cccc--CCChhhhccc
Q 032271 124 IMNYR-NARS--QSCLFAVAAY 142 (144)
Q Consensus 124 l~Cir-~~rS--kSCP~CR~~l 142 (144)
..||| |.++ .-||.||..+
T Consensus 97 ktCIrkn~~~~gnpCPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEY 118 (239)
T ss_pred hHHHhhcCeecCCCCCccccce
Confidence 45777 5553 6899999864
No 107
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=37.17 E-value=11 Score=37.54 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.4
Q ss_pred CCCCCCCchhhhhHHhccc--c------CCChhhhc
Q 032271 113 IPDKYFSHNGLIMNYRNAR--S------QSCLFAVA 140 (144)
Q Consensus 113 Lpn~~C~H~fCl~Cir~~r--S------kSCP~CR~ 140 (144)
=+- |+|.+|+.||+.|. . ..|+|||-
T Consensus 246 C~~--C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 246 CPR--CGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred ccc--cCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 355 99999999999882 1 57899874
No 108
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.30 E-value=26 Score=35.31 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=40.5
Q ss_pred hhhhhhhhHHHHhhc-ccccccCC----Ccccccccccc-ccceecccCccCCCCCCCCCchhhhhHHhccccCCChhhh
Q 032271 66 CSEISSRKRVEERRK-LSDKDLDR----NDECGICMENC-TKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAV 139 (144)
Q Consensus 66 c~e~~~rkd~E~~~k-~s~id~~~----e~eCgICME~~-~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rSkSCP~CR 139 (144)
-++.|.+ ++++.++ +.++..+. .-.|..|--.. ..+|- -- |.|+|=-.|.. -...-||-|+
T Consensus 813 ~Ie~yk~-~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~Vh---------F~--CgHsyHqhC~e-~~~~~CP~C~ 879 (933)
T KOG2114|consen 813 AIEVYKK-DIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVH---------FL--CGHSYHQHCLE-DKEDKCPKCL 879 (933)
T ss_pred HHHHHHH-HHHHHHHHHHHhhcccceeeeeeecccCCccccceee---------ee--cccHHHHHhhc-cCcccCCccc
Confidence 3456555 6666443 44433332 23788887544 33444 24 99999888886 4567899999
Q ss_pred cccc
Q 032271 140 AAYR 143 (144)
Q Consensus 140 ~~l~ 143 (144)
..++
T Consensus 880 ~e~~ 883 (933)
T KOG2114|consen 880 PELR 883 (933)
T ss_pred hhhh
Confidence 8553
No 109
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.37 E-value=19 Score=33.66 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=29.8
Q ss_pred Ccccccccccc-----ccceecccCccCCCCCCCCCchhhhhHHhcccc----CCChhhhc
Q 032271 89 NDECGICMENC-----TKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS----QSCLFAVA 140 (144)
Q Consensus 89 e~eCgICME~~-----~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS----kSCP~CR~ 140 (144)
...|.||++.- ..+|- +- |.|.|=-.||++|-. +-||.|-.
T Consensus 4 g~tcpiclds~~~~g~hr~vs---------l~--cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVS---------LQ--CGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred cccCceeeeeeeecCceEEee---------ec--ccccccHHHHHHHHhhhhhhhCcccCC
Confidence 46799999652 22232 66 999999999998843 46999954
No 110
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=34.03 E-value=26 Score=32.03 Aligned_cols=85 Identities=12% Similarity=-0.087 Sum_probs=51.0
Q ss_pred HHhhhchHhhhhhcccchhhhhhhchhhhhhhhhHHHHhhcccccccCCCccccccccccccceecccCccCCCCCCCCC
Q 032271 40 YAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFS 119 (144)
Q Consensus 40 Y~vI~PsL~qL~~~~~d~e~~~q~~~c~e~~~rkd~E~~~k~s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~ 119 (144)
|--|-|||--|- ..|.-.++|...-+. +.-..|.+.+.-.-.+-.-.+|-.|-|.....++ .. ||
T Consensus 298 ~~~~~~s~~~i~--~~e~~s~~~~~~~a~--~~~~l~~~~~~~~~~~~s~~~~~~~~~~~~st~~---------~~--~~ 362 (394)
T KOG2113|consen 298 YWGTNNSLNDIM--ENEILSRKYDALSAW--SSMGLEKREESPTNGLMSSLKGTSAGFGLLSTIW---------SG--GN 362 (394)
T ss_pred ccccCcchhhhh--hhhhhhhhcchhhcc--ccccchhccccccccchhhcccccccCceeeeEe---------ec--CC
Confidence 444667766543 333444554332111 1111222223333344456788899888777677 77 99
Q ss_pred ch-hhhhHHhccccCCChhhh
Q 032271 120 HN-GLIMNYRNARSQSCLFAV 139 (144)
Q Consensus 120 H~-fCl~Cir~~rSkSCP~CR 139 (144)
|. ||..|..-.-+-.||.|-
T Consensus 363 ~n~~~~~~a~~s~~~~~~~c~ 383 (394)
T KOG2113|consen 363 MNLSPGSLASASASPTSSTCD 383 (394)
T ss_pred cccChhhhhhcccCCcccccc
Confidence 99 899999877788899984
No 111
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=29.22 E-value=35 Score=32.69 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=23.8
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA 130 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~ 130 (144)
++|..|.||..--.+.+. .. |+|+.|-.|.|+.
T Consensus 2 eeelkc~vc~~f~~epii---------l~--c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPII---------LP--CSHNLCQACARNI 34 (699)
T ss_pred cccccCceehhhccCceE---------ee--cccHHHHHHHHhh
Confidence 457889999865333233 45 9999999999943
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=28.23 E-value=16 Score=32.34 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=30.7
Q ss_pred Ccccccccccc---ccceecccCccCCCCCCCCCchhhhhHHhc---cccCCCh--hhhcccc
Q 032271 89 NDECGICMENC---TKMVTRKHFSLERIPDKYFSHNGLIMNYRN---ARSQSCL--FAVAAYR 143 (144)
Q Consensus 89 e~eCgICME~~---~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~---~rSkSCP--~CR~~l~ 143 (144)
|.-|.+|-.-. ..+++ -+-|. |-|-||-+|.-+ ..--.|| -|-..||
T Consensus 10 d~~CPvCksDrYLnPdik~------linPE--CyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKI------LINPE--CYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEE------EECHH--HHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 55799997432 11111 12355 999999999983 3346799 7877665
No 113
>PF12023 DUF3511: Domain of unknown function (DUF3511); InterPro: IPR021899 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain has two completely conserved residues (Y and K) that may be functionally important.
Probab=27.71 E-value=5.2 Score=26.78 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=19.4
Q ss_pred eEEeeece---eeEEEEEee-CCCCcCchhhhhchHhh
Q 032271 5 WFCVIETK---LFVNVQVYV-DGMPALSSKERKATLRE 38 (144)
Q Consensus 5 ~~~~~~~~---~iliykvy~-dG~~~~s~~eRkAtire 38 (144)
||--||+| ||..||||. .|+- |+|+|.
T Consensus 2 ~~~dpE~kRkkRVA~Yk~y~vEGKv-------K~S~R~ 32 (47)
T PF12023_consen 2 GFNDPEMKRKKRVASYKVYAVEGKV-------KGSLRK 32 (47)
T ss_pred CCCCHHHHHHHHHHhhheeeeehHH-------HHHHHh
Confidence 56667764 699999997 7764 466665
No 114
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=27.57 E-value=55 Score=26.79 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=26.9
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchh-----hhhHHhcc----ccCCChhhhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNG-----LIMNYRNA----RSQSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~f-----Cl~Cir~~----rSkSCP~CR~~l~ 143 (144)
.+.+|=||.+.... . . .||+=.. =-.|.++| +..+||+|...++
T Consensus 7 ~~~~CRIC~~~~~~--~---------~-~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV--V---------T-NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC--c---------c-CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 47899999987432 1 1 2354211 23455655 4578999998764
No 115
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.37 E-value=29 Score=20.08 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=6.9
Q ss_pred CCChhhhccc
Q 032271 133 QSCLFAVAAY 142 (144)
Q Consensus 133 kSCP~CR~~l 142 (144)
+.||.|+..+
T Consensus 1 K~CP~C~~~V 10 (26)
T PF10571_consen 1 KTCPECGAEV 10 (26)
T ss_pred CcCCCCcCCc
Confidence 4688887654
No 116
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=23.19 E-value=34 Score=29.35 Aligned_cols=16 Identities=56% Similarity=1.086 Sum_probs=11.9
Q ss_pred hchHhhh---HHhhhchHh
Q 032271 33 KATLREF---YAIIYPSLR 48 (144)
Q Consensus 33 kAtireF---Y~vI~PsL~ 48 (144)
.+++.+| |.+|+|||.
T Consensus 124 ~~~ln~Fl~~Y~~I~PSl~ 142 (233)
T TIGR02878 124 QEKLNEFLSLYDLIYPSLT 142 (233)
T ss_pred HHHHHHHHHHhhhccccee
Confidence 3556666 889999964
No 117
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.13 E-value=89 Score=31.65 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=26.1
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR 128 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir 128 (144)
.-++..+.|++|+-+ .+.+.|-. .+|+|.|=..|+-
T Consensus 812 ~v~ep~d~C~~C~~~----ll~~pF~v-----f~CgH~FH~~Cl~ 847 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRP----LLIKPFYV-----FPCGHCFHRDCLI 847 (911)
T ss_pred EEecCccchHHhcch----hhcCccee-----eeccchHHHHHHH
Confidence 346788999999988 33333322 3399999999987
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=22.22 E-value=59 Score=29.18 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=31.9
Q ss_pred ccccccccccccceecccCccCCCCCCCCCchhhhhHHh--ccccCCChhhhcccc
Q 032271 90 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NARSQSCLFAVAAYR 143 (144)
Q Consensus 90 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~rSkSCP~CR~~l~ 143 (144)
.+|.||-|..... .. ..|| -+|.|..|+-|.. --...+||.||.++.
T Consensus 250 ~s~p~~~~~~~~~----d~--~~lP-~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLT----DS--NFLP-CPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCccccc----cc--cccc-ccccccchhhhhhcccccCCCCCccCCccc
Confidence 7899999964211 01 1134 3699999999987 234578999998764
No 119
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.98 E-value=41 Score=33.86 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=23.4
Q ss_pred CCCCCCCCchhhhhHHhc----------cccCCChhhhccc
Q 032271 112 RIPDKYFSHNGLIMNYRN----------ARSQSCLFAVAAY 142 (144)
Q Consensus 112 ~Lpn~~C~H~fCl~Cir~----------~rSkSCP~CR~~l 142 (144)
+||+ =.-++|..|..- -+..-|||||.+.
T Consensus 1038 ilPd--~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~ 1076 (1081)
T KOG1538|consen 1038 LLPD--ASITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSK 1076 (1081)
T ss_pred hCCc--chhhhCchHHhhhccchhhHHHHhcCCCCcccccc
Confidence 5888 888899999882 2457899999875
No 120
>PF10548 P22_AR_C: P22AR C-terminal domain; InterPro: IPR018876 This entry represents the carboxy-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018875 from INTERPRO.
Probab=21.77 E-value=58 Score=22.91 Aligned_cols=20 Identities=35% Similarity=0.800 Sum_probs=16.8
Q ss_pred HhhhHHhhhchHhhhhhccc
Q 032271 36 LREFYAIIYPSLRQLESEFS 55 (144)
Q Consensus 36 ireFY~vI~PsL~qL~~~~~ 55 (144)
-++++..++|.|++|.+.+.
T Consensus 26 m~~~~~~l~p~L~~lgS~~a 45 (74)
T PF10548_consen 26 MRELCQELYPALKALGSNYA 45 (74)
T ss_pred HHHHHHHHHHHHHHhCCCcC
Confidence 35788999999999997765
No 121
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=21.36 E-value=20 Score=22.31 Aligned_cols=15 Identities=0% Similarity=-0.352 Sum_probs=12.5
Q ss_pred CCchhhhhHHhcccc
Q 032271 118 FSHNGLIMNYRNARS 132 (144)
Q Consensus 118 C~H~fCl~Cir~~rS 132 (144)
|++.||..|-..|..
T Consensus 46 C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 46 CGTEFCFKCGEPWHE 60 (64)
T ss_dssp CCSEECSSSTSESCT
T ss_pred CCCcCccccCcccCC
Confidence 999999999886643
No 122
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=20.09 E-value=1.3e+02 Score=27.99 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=24.3
Q ss_pred EEeeeceeeEEEEEeeCCC----CcCch-------hhhhchHhhhHHhhhch
Q 032271 6 FCVIETKLFVNVQVYVDGM----PALSS-------KERKATLREFYAIIYPS 46 (144)
Q Consensus 6 ~~~~~~~~iliykvy~dG~----~~~s~-------~eRkAtireFY~vI~Ps 46 (144)
|.-+.+...|..||++++. |+++. +||. +.+||||.|.-
T Consensus 352 LlS~~~n~rV~VKv~l~~d~P~VPSIt~I~P~AnW~ERE--a~DMFGI~FeG 401 (430)
T PRK07735 352 LYSYGKRQSVAVKVKLDREAPQVESVTPLWKGANWPERE--AYDLLGIVFKG 401 (430)
T ss_pred EEecCCCCEEEEEEecCCCCCCCCChHHhhccCChHHHH--HHHHhCcccCC
Confidence 3334555667778886533 44443 5665 57889988855
Done!