Query 032271
Match_columns 144
No_of_seqs 114 out of 142
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 19:21:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayc_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 87.7 3.9 46 87-143 51-98 (138)
2 1iym_A EL5; ring-H2 finger, ub 99.0 5.5E-11 1.9E-15 73.2 2.1 50 86-142 2-53 (55)
3 3ng2_A RNF4, snurf, ring finge 99.0 5.1E-11 1.7E-15 76.3 1.8 50 83-143 4-62 (71)
4 2ea6_A Ring finger protein 4; 99.0 7.3E-11 2.5E-15 74.8 1.9 58 83-144 9-68 (69)
5 2ecn_A Ring finger protein 141 98.9 2.5E-10 8.5E-15 73.5 2.1 47 85-143 11-59 (70)
6 2djb_A Polycomb group ring fin 98.9 3.1E-10 1.1E-14 74.0 2.3 49 85-143 11-61 (72)
7 2ysl_A Tripartite motif-contai 98.9 5E-10 1.7E-14 72.2 2.5 49 84-143 15-68 (73)
8 3ztg_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 75.3 2.6 50 83-142 7-60 (92)
9 1v87_A Deltex protein 2; ring- 98.9 4.4E-10 1.5E-14 78.3 2.0 59 83-143 19-93 (114)
10 2kiz_A E3 ubiquitin-protein li 98.9 6.4E-10 2.2E-14 71.4 2.6 50 83-143 8-62 (69)
11 2xeu_A Ring finger protein 4; 98.9 3.1E-10 1.1E-14 70.9 1.1 45 88-143 2-55 (64)
12 2ecm_A Ring finger and CHY zin 98.9 4.8E-10 1.6E-14 68.8 1.7 46 87-143 3-54 (55)
13 1chc_A Equine herpes virus-1 r 98.9 6.1E-10 2.1E-14 71.1 2.2 46 87-143 3-51 (68)
14 2ct2_A Tripartite motif protei 98.9 5.9E-10 2E-14 73.7 2.1 50 83-143 9-67 (88)
15 2csy_A Zinc finger protein 183 98.9 7.3E-10 2.5E-14 73.4 2.4 49 84-143 10-60 (81)
16 2egp_A Tripartite motif-contai 98.9 8.1E-10 2.8E-14 71.9 2.4 49 84-143 7-64 (79)
17 2yur_A Retinoblastoma-binding 98.9 6.8E-10 2.3E-14 73.1 1.9 50 83-142 9-62 (74)
18 2ect_A Ring finger protein 126 98.8 8.9E-10 3E-14 72.2 2.0 53 83-143 9-63 (78)
19 2ep4_A Ring finger protein 24; 98.8 7.9E-10 2.7E-14 71.8 1.7 52 84-143 10-63 (74)
20 2ecy_A TNF receptor-associated 98.8 9.5E-10 3.3E-14 70.4 2.1 49 84-143 10-61 (66)
21 2ecl_A Ring-box protein 2; RNF 98.8 9.4E-10 3.2E-14 74.2 1.8 54 88-143 14-75 (81)
22 1x4j_A Ring finger protein 38; 98.8 9.6E-10 3.3E-14 71.9 1.7 47 86-143 20-71 (75)
23 1g25_A CDK-activating kinase a 98.8 1E-09 3.5E-14 70.1 1.6 45 88-143 2-54 (65)
24 2ecw_A Tripartite motif-contai 98.8 1.3E-09 4.4E-14 71.0 1.9 48 85-143 15-70 (85)
25 2d8t_A Dactylidin, ring finger 98.8 1.7E-09 5.6E-14 70.3 2.4 47 86-143 12-60 (71)
26 2ecj_A Tripartite motif-contai 98.8 1.6E-09 5.4E-14 66.9 2.1 43 85-138 11-58 (58)
27 2ckl_A Polycomb group ring fin 98.8 8.5E-10 2.9E-14 76.8 0.9 50 84-143 10-61 (108)
28 2ecv_A Tripartite motif-contai 98.8 1.8E-09 6.3E-14 70.2 2.2 49 84-143 14-70 (85)
29 2l0b_A E3 ubiquitin-protein li 98.8 1.6E-09 5.5E-14 74.1 1.9 47 86-143 37-88 (91)
30 2y43_A E3 ubiquitin-protein li 98.8 9.9E-10 3.4E-14 75.2 0.7 46 88-143 21-68 (99)
31 4ap4_A E3 ubiquitin ligase RNF 98.8 1.3E-09 4.4E-14 75.8 1.3 46 87-143 5-59 (133)
32 1e4u_A Transcriptional repress 98.8 3E-09 1E-13 72.7 2.7 51 84-143 6-61 (78)
33 3l11_A E3 ubiquitin-protein li 98.7 1.5E-09 5.2E-14 76.1 1.0 47 85-142 11-60 (115)
34 3fl2_A E3 ubiquitin-protein li 98.7 1.4E-09 4.8E-14 77.3 0.7 47 86-143 49-98 (124)
35 4ic3_A E3 ubiquitin-protein li 98.7 1.3E-09 4.5E-14 72.4 0.4 43 88-143 23-66 (74)
36 3lrq_A E3 ubiquitin-protein li 98.7 2.2E-09 7.6E-14 74.5 0.0 48 86-143 19-69 (100)
37 2ysj_A Tripartite motif-contai 98.7 6.4E-09 2.2E-13 65.8 2.2 44 84-138 15-63 (63)
38 1t1h_A Gspef-atpub14, armadill 98.7 6.2E-09 2.1E-13 68.1 2.0 49 84-143 3-54 (78)
39 1jm7_A BRCA1, breast cancer ty 98.7 2.6E-09 8.7E-14 73.6 0.1 45 88-143 20-69 (112)
40 1jm7_B BARD1, BRCA1-associated 98.7 3.5E-09 1.2E-13 75.0 0.7 47 87-143 20-66 (117)
41 1bor_A Transcription factor PM 98.6 6.3E-09 2.2E-13 65.8 1.2 45 87-143 4-48 (56)
42 2ckl_B Ubiquitin ligase protei 98.6 4.4E-09 1.5E-13 78.0 0.4 47 86-142 51-100 (165)
43 4ap4_A E3 ubiquitin ligase RNF 98.6 6.7E-09 2.3E-13 72.2 0.9 54 86-143 69-124 (133)
44 2ecg_A Baculoviral IAP repeat- 98.6 5.8E-09 2E-13 69.1 0.4 43 88-143 24-67 (75)
45 2ea5_A Cell growth regulator w 98.6 2.4E-08 8.3E-13 66.2 3.0 46 85-143 11-57 (68)
46 2vje_A E3 ubiquitin-protein li 98.6 8E-09 2.7E-13 67.3 0.7 48 86-143 5-56 (64)
47 2y1n_A E3 ubiquitin-protein li 98.6 1.4E-08 4.8E-13 88.2 1.7 46 87-143 330-378 (389)
48 2yho_A E3 ubiquitin-protein li 98.5 1.2E-08 3.9E-13 69.3 0.4 42 89-143 18-60 (79)
49 3hct_A TNF receptor-associated 98.5 2.4E-08 8.1E-13 70.8 1.6 49 84-143 13-64 (118)
50 2vje_B MDM4 protein; proto-onc 98.5 1.5E-08 5.2E-13 65.8 0.5 48 87-143 5-55 (63)
51 1rmd_A RAG1; V(D)J recombinati 98.5 1.3E-08 4.5E-13 71.4 -0.2 46 87-143 21-69 (116)
52 1z6u_A NP95-like ring finger p 98.5 1.8E-08 6.2E-13 75.4 0.4 47 86-143 75-124 (150)
53 3dpl_R Ring-box protein 1; ubi 98.4 4.3E-08 1.5E-12 70.5 1.4 53 88-142 36-99 (106)
54 3knv_A TNF receptor-associated 98.4 5.4E-08 1.8E-12 72.3 1.9 49 83-142 25-76 (141)
55 4a0k_B E3 ubiquitin-protein li 98.3 1E-07 3.5E-12 70.3 0.2 53 88-142 47-110 (117)
56 3hcs_A TNF receptor-associated 98.3 2E-07 7E-12 69.1 1.4 49 84-143 13-64 (170)
57 2c2l_A CHIP, carboxy terminus 98.2 3.9E-07 1.3E-11 70.0 2.4 49 84-143 203-254 (281)
58 3t6p_A Baculoviral IAP repeat- 98.2 2.1E-07 7.3E-12 78.7 0.3 44 87-143 293-337 (345)
59 2kr4_A Ubiquitin conjugation f 98.2 6.7E-07 2.3E-11 61.0 2.1 49 84-143 9-59 (85)
60 1wim_A KIAA0161 protein; ring 98.0 9.1E-07 3.1E-11 60.3 0.4 47 87-141 3-61 (94)
61 2kre_A Ubiquitin conjugation f 98.0 1.7E-06 5.9E-11 61.1 1.7 50 83-143 23-74 (100)
62 1wgm_A Ubiquitin conjugation f 98.0 2.4E-06 8.4E-11 60.1 2.4 49 84-143 17-68 (98)
63 2yu4_A E3 SUMO-protein ligase 97.8 6E-06 2.1E-10 56.9 1.3 45 87-141 5-59 (94)
64 2d8s_A Cellular modulator of i 97.7 1.8E-05 6.2E-10 54.2 2.2 50 85-143 11-69 (80)
65 2f42_A STIP1 homology and U-bo 97.4 5.7E-05 2E-09 59.2 2.7 50 83-143 100-152 (179)
66 3k1l_B Fancl; UBC, ring, RWD, 97.0 0.00014 4.7E-09 63.8 0.9 48 87-142 306-371 (381)
67 3htk_C E3 SUMO-protein ligase 96.9 0.00026 9E-09 59.2 1.5 46 88-143 180-231 (267)
68 3vk6_A E3 ubiquitin-protein li 96.8 0.00019 6.5E-09 52.9 0.2 26 118-143 20-48 (101)
69 1vyx_A ORF K3, K3RING; zinc-bi 96.6 0.0013 4.5E-08 42.8 2.6 48 85-143 2-58 (60)
70 2ct0_A Non-SMC element 1 homol 96.5 0.0013 4.3E-08 45.0 2.6 46 87-142 13-62 (74)
71 2bay_A PRE-mRNA splicing facto 95.8 0.0023 7.7E-08 41.6 0.9 44 90-143 4-49 (61)
72 1weo_A Cellulose synthase, cat 91.7 0.14 4.9E-06 37.3 3.5 53 88-144 15-70 (93)
73 2jun_A Midline-1; B-BOX, TRIM, 89.6 0.12 4.2E-06 34.8 1.4 31 89-129 3-35 (101)
74 3nw0_A Non-structural maintena 89.6 0.15 5E-06 40.9 2.1 45 88-142 179-227 (238)
75 2ko5_A Ring finger protein Z; 83.3 0.24 8.3E-06 36.4 0.2 43 89-143 28-72 (99)
76 2lbm_A Transcriptional regulat 63.7 4.6 0.00016 30.6 2.8 45 85-140 59-116 (142)
77 2jmo_A Parkin; IBR, E3 ligase, 61.9 1.5 5.3E-05 29.4 -0.1 20 118-137 56-75 (80)
78 1z60_A TFIIH basal transcripti 58.4 4.1 0.00014 26.9 1.4 40 90-138 16-58 (59)
79 3h3h_A Uncharacterized snoal-l 50.8 7.6 0.00026 25.8 1.9 21 23-43 1-21 (122)
80 3ql9_A Transcriptional regulat 50.7 9.8 0.00033 28.4 2.6 45 86-141 54-111 (129)
81 1co4_A AMT1, protein (activato 50.4 2.9 0.0001 26.4 -0.2 16 122-137 10-25 (42)
82 2ct7_A Ring finger protein 31; 40.2 3.8 0.00013 27.6 -1.0 22 114-137 47-72 (86)
83 2l5u_A Chromodomain-helicase-D 39.6 22 0.00077 22.5 2.7 49 81-140 3-57 (61)
84 2vgl_S AP-2 complex subunit si 31.6 80 0.0027 22.4 4.9 40 1-44 1-40 (142)
85 3u5n_A E3 ubiquitin-protein li 28.6 19 0.00063 27.5 1.1 44 87-141 5-54 (207)
86 2rkh_A Putative APHA-like tran 27.1 18 0.00063 27.6 0.8 31 26-56 26-65 (180)
87 1w63_Q Adapter-related protein 25.9 1E+02 0.0035 22.4 4.7 41 1-45 1-41 (158)
88 2xi5_A RNA polymerase L, L-pro 24.9 27 0.00093 27.9 1.4 32 14-51 91-122 (184)
89 3a1b_A DNA (cytosine-5)-methyl 23.9 34 0.0012 26.5 1.8 38 82-128 71-109 (159)
90 3o36_A Transcription intermedi 22.5 29 0.00099 25.8 1.1 43 88-141 3-51 (184)
91 2lri_C Autoimmune regulator; Z 21.4 60 0.0021 21.0 2.4 43 88-141 11-59 (66)
92 3mab_A Uncharacterized protein 21.1 36 0.0012 23.8 1.3 15 29-43 71-85 (93)
93 3ogl_Q JAZ1 incomplete degron 20.6 36 0.0012 18.6 1.0 10 31-40 5-14 (21)
94 2fdn_A Ferredoxin; electron tr 20.0 56 0.0019 18.6 1.8 15 90-104 9-23 (55)
No 1
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=3.5e-11 Score=87.67 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=38.0
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
+.+..|.||++.....|+ .+ |+|+||..|+..| ++.+||.||.++.
T Consensus 51 ~~~~~C~iC~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVT---------LN--CAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHHSBCTTTCSBCSSEEE---------ET--TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred cccCCCcccCcccCCceE---------CC--CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 345689999999877666 45 9999999999977 4578999999874
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.05 E-value=5.5e-11 Score=73.24 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=37.5
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAY 142 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l 142 (144)
++.+.+|.||+|..... .....+|+ |+|.||..|+..| ++.+||.||..+
T Consensus 2 ~~~~~~C~IC~~~~~~~-----~~~~~~~~--C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDG-----EEARFLPR--CGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTT-----SCCEECSS--SCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCC-----CceEECCC--CCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 45678999999985431 01112477 9999999999977 467899999876
No 3
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.04 E-value=5.1e-11 Score=76.29 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=39.1
Q ss_pred ccccCCCccccccccccccc-------eecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 83 DKDLDRNDECGICMENCTKM-------VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~-------V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
....+.+.+|.||++..... ++ .+ |+|.||..|+..| .+.+||.||..+.
T Consensus 4 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 4 GLRPSGTVSCPICMDGYSEIVQNGRLIVS---------TE--CGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp --CCTTCCBCTTTCCBHHHHHTTTCCEEE---------CT--TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCcccChhhhccccccCCeEe---------CC--CCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 44566789999999986553 33 56 9999999999977 4579999999875
No 4
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=7.3e-11 Score=74.77 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=39.9
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhccccC
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYRE 144 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~~ 144 (144)
....+.+.+|.||++.....+...... .+.+ |+|.||..|+..| .+.+||.||..+.+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~--~~~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLI--VSTE--CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCE--EECS--SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCe--EeCC--CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 334566889999999865431000000 0146 9999999999987 45789999998753
No 5
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.5e-10 Score=73.49 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=38.4
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
++..+.+|.||++.... ++ .+ |+|.||..|+..| +..+||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LI---------LP--CAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EE---------ET--TTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred cCCCCCCCeeCCcCccC-cc---------cC--CCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 34557899999998766 43 35 9999999999987 4589999998875
No 6
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.1e-10 Score=73.99 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=39.4
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc--cCCChhhhcccc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--SQSCLFAVAAYR 143 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--SkSCP~CR~~l~ 143 (144)
+++.+..|.||++...+.+. +.+ |+|.||..|+..|- +.+||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATT--------ITE--CLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEE--------CSS--SCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hcCCCCCCCCCChHHHCcCE--------ECC--CCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 34567899999998766554 346 99999999999774 578999999875
No 7
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=5e-10 Score=72.17 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=39.8
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc-----cCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR-----SQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r-----SkSCP~CR~~l~ 143 (144)
.+++.+.+|.||++...+.+. .+ |+|.||..|+..|- ...||.||..+.
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVT---------ID--CGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEE---------CT--TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HhCccCCEeccCCcccCCeEE---------cC--CCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 345668899999998777666 35 99999999999774 348999999875
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.90 E-value=5.3e-10 Score=75.29 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=40.4
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc----cCCChhhhccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR----SQSCLFAVAAY 142 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r----SkSCP~CR~~l 142 (144)
..++..+..|+||++...+.|. +|. |+|+||..|+..|- ..+||.||..+
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVV--------IPC--CGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEE--------CTT--TCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cccCCcCCCCCCCChhhcCceE--------CCC--CCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4456778999999998766555 477 99999999999663 35899999886
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.89 E-value=4.4e-10 Score=78.34 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=39.9
Q ss_pred ccccCCCccccccccccccceeccc-------Cc--cCCCCCCCCCchhhhhHHhccc-------cCCChhhhcccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKH-------FS--LERIPDKYFSHNGLIMNYRNAR-------SQSCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~-------~~--~~~Lpn~~C~H~fCl~Cir~~r-------SkSCP~CR~~l~ 143 (144)
.+....+++|.||||.....+.... .+ ...+.. |+|.||..|+..|- +.+||.||..+.
T Consensus 19 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 19 ELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK--CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp ECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS--SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred hccCCCCCcCccCChhhcCcccccccccccccCcccceecCC--CCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4445567899999998644321000 00 011356 99999999999875 568999998864
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.89 E-value=6.4e-10 Score=71.37 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=37.5
Q ss_pred ccccCCCccccccccccc---cceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 83 DKDLDRNDECGICMENCT---KMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~---k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
+.+.+.+.+|.||++... ..+. .+ |+|.||..|+..| .+.+||.||..+.
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~---------~~--C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRR---------LP--CMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEE---------CT--TSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred cCcCCCCCCCeeCCccccCCCcEEE---------eC--CCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 334556789999998752 1222 34 9999999999977 4578999998874
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.89 E-value=3.1e-10 Score=70.89 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=36.1
Q ss_pred CCccccccccccccc-------eecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 88 RNDECGICMENCTKM-------VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~-------V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.+.+|+||++...+. ++ .+ |+|.||..|+..| .+.+||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVS---------TE--CGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEE---------ET--TSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEe---------CC--CCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 467999999986543 23 46 9999999999977 4578999999875
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.88 E-value=4.8e-10 Score=68.76 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=36.1
Q ss_pred CCCcccccccccccc----ceecccCccCCCCCCCCCchhhhhHHhccc--cCCChhhhcccc
Q 032271 87 DRNDECGICMENCTK----MVTRKHFSLERIPDKYFSHNGLIMNYRNAR--SQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k----~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--SkSCP~CR~~l~ 143 (144)
+.+.+|.||+|.... .++ .+ |+|.||..|+..|- +.+||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHV---------LP--CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEE---------CT--TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEe---------cC--CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457899999998533 233 45 99999999999773 478999998864
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.88 E-value=6.1e-10 Score=71.10 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=36.8
Q ss_pred CCCccccccccccccc-eecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKM-VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~-V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
+.+.+|.||++..... +. .+ |+|.||..|+.+| ++.+||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~---------~~--C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMA---------LP--CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEE---------TT--TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEe---------cC--CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3468999999986553 33 45 9999999999977 4578999998764
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=5.9e-10 Score=73.68 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=38.9
Q ss_pred ccccCCCcccccccccccc----ceecccCccCCCCCCCCCchhhhhHHhcccc-----CCChhhhcccc
Q 032271 83 DKDLDRNDECGICMENCTK----MVTRKHFSLERIPDKYFSHNGLIMNYRNARS-----QSCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k----~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS-----kSCP~CR~~l~ 143 (144)
..+++.+.+|.||++.... .++ .. |+|.||..|+.+|-. ..||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKL---------LH--CGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEE---------CS--SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhhccCCCCCccCCccccccCCCeEE---------CC--CCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 4455678899999998655 344 35 999999999997732 68999998764
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=7.3e-10 Score=73.44 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=39.4
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.+.+.+.+|.||++.....|+ .+ |+|.||..|+..| ...+||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVV---------TK--CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEE---------CT--TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcCeeE---------cc--CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 344557899999998766665 45 9999999999977 3578999998863
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.86 E-value=8.1e-10 Score=71.92 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=38.7
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---------cCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---------SQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---------SkSCP~CR~~l~ 143 (144)
.+++.+.+|.||++...+.+. .+ |+|+||..|+..|- ...||.||..+.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~---------l~--CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLS---------LD--CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCC---------CS--SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hhcccCCCCcCCCcccCCeeE---------CC--CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 345678999999998765544 35 99999999999653 457999998874
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.85 E-value=6.8e-10 Score=73.06 Aligned_cols=50 Identities=22% Similarity=0.207 Sum_probs=39.9
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc----CCChhhhccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS----QSCLFAVAAY 142 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS----kSCP~CR~~l 142 (144)
..++..+..|.||++...+.|. +++ |+|+||..|+..|-. .+||.||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVV--------IPC--CGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEE--------CSS--SCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred cccCCCCCCCcCCChHHhCCeE--------cCC--CCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 3445667899999998766555 477 999999999997743 5899999875
No 18
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.84 E-value=8.9e-10 Score=72.19 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=37.9
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
+.+.+.+.+|.||++....... .. ... |+|.||..|+..| .+.+||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~-----~~-~~~--C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGES-----VR-QLP--CNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSC-----EE-ECT--TSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCC-----EE-EeC--CCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 3445668899999987532110 00 124 9999999999987 4578999999874
No 19
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=7.9e-10 Score=71.78 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=37.5
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.+++.+.+|.||++....... ... .+ |+|.||..|+..| ...+||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~-----~~~-~~--C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDE-----LGI-CP--CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSC-----EEE-ET--TTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred ccCCCCCCCcCCCcccCCCCc-----EEE-cC--CCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 345668899999998532211 001 24 9999999999977 3568999999874
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=9.5e-10 Score=70.40 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=39.3
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
.++..+.+|.||++...+.+. .+ |+|.||..|+..|- ...||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQ---------TE--CGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCC---------CS--SSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hcCCcCCCCCCCChHhcCeeE---------CC--CCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 345667899999998765554 35 99999999999774 468999999875
No 21
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=9.4e-10 Score=74.21 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=36.8
Q ss_pred CCccccccccccccc---eecccCc---cCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 88 RNDECGICMENCTKM---VTRKHFS---LERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~---V~~k~~~---~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.+++|+||++..... =++.+.+ .-.+++ |+|.|+..|+..| ++.+||.||..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~--C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGE--CNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEET--TSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCC--CCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 467899999875431 0000000 112477 9999999999988 5689999999864
No 22
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=9.6e-10 Score=71.94 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=36.4
Q ss_pred cCCCccccccccccccc---eecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 86 LDRNDECGICMENCTKM---VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~---V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.+.+.+|.|||+..... +. .. |+|.||..|+..| .+.+||.||..+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~---------l~--C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRV---------LP--CNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEE---------ET--TTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEE---------EC--CCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 35578999999875332 22 24 9999999999988 5679999998864
No 23
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=1e-09 Score=70.05 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=34.6
Q ss_pred CCcccccccc-ccccc----eecccCccCCCCCCCCCchhhhhHHhcc---ccCCChhhhcccc
Q 032271 88 RNDECGICME-NCTKM----VTRKHFSLERIPDKYFSHNGLIMNYRNA---RSQSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME-~~~k~----V~~k~~~~~~Lpn~~C~H~fCl~Cir~~---rSkSCP~CR~~l~ 143 (144)
.+..|.||++ ...+. ++ .+ |+|+||..|+.+| .+.+||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMV---------NV--CGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEE---------CT--TCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeec---------CC--CCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 3678999999 43222 23 45 9999999999977 4568999999875
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.80 E-value=1.3e-09 Score=71.01 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=38.4
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc--------cCCChhhhcccc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--------SQSCLFAVAAYR 143 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--------SkSCP~CR~~l~ 143 (144)
+++.+.+|.||++...+.++ .+ |+|.||..|+..|- ...||.||..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVS---------AD--CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEE---------CT--TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCccee---------CC--CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 35567899999998766555 45 99999999999652 568999998874
No 25
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=70.33 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=38.4
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.+.+.+|.||++...+.|. .+ |+|.||..|+..| ....||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~---------~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVS---------LP--CKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEE---------ET--TTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCEE---------cc--CCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4557899999998766665 35 9999999999976 4478999999874
No 26
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.6e-09 Score=66.86 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=35.1
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-----ccCCChhh
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-----RSQSCLFA 138 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-----rSkSCP~C 138 (144)
++..+.+|.||++...+.+. .+ |+|.||..|+..| +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVI---------IE--CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCC---------CS--SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEe---------CC--CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 44567899999998766555 45 9999999999988 55789988
No 27
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.79 E-value=8.5e-10 Score=76.80 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=40.1
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc--cCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--SQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--SkSCP~CR~~l~ 143 (144)
-+++.+..|.||++...+.|. +.+ |+|+||..|+..|- +.+||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATT--------IIE--CLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEE--------ETT--TCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred hccCCcCCCccCChHHhCcCE--------eCC--CCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 345668899999998766555 346 99999999999773 478999998764
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.8e-09 Score=70.24 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=38.7
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc--------cCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--------SQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--------SkSCP~CR~~l~ 143 (144)
.++..+.+|.||++...+.+. .+ |+|.||..|+..|- ...||.||..+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLS---------LD--CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBC---------CS--SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HHccCCCCCCCCCcccCCcee---------CC--CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 345667899999998766554 35 99999999999652 568999998764
No 29
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.78 E-value=1.6e-09 Score=74.11 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=36.1
Q ss_pred cCCCcccccccccccc---ceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 86 LDRNDECGICMENCTK---MVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k---~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.+.+.+|.|||+.... .+. .+ |+|.||..|+..| .+.+||.||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~---------l~--C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATE---------LP--CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEE---------ET--TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEe---------cC--CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4567889999987533 222 24 9999999999987 4578999998864
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.78 E-value=9.9e-10 Score=75.23 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=37.3
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc--cCCChhhhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--SQSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--SkSCP~CR~~l~ 143 (144)
.+.+|+||++...+.|. +++ |+|+||..|+..|- +.+||.||..+.
T Consensus 21 ~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMI--------IPQ--CSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSSEEE--------CTT--TCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccCChhhCCcCE--------ECC--CCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 46789999998766555 346 99999999999774 468999998764
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=1.3e-09 Score=75.79 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=37.5
Q ss_pred CCCccccccccccccc-------eecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKM-------VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~-------V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
+.+.+|+||+|...+. +. .. |+|+||..|+..| .+.+||.||..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVS---------TE--CGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEE---------ET--TCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEe---------cC--CCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 4578999999986554 33 46 9999999999987 5679999999874
No 32
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.76 E-value=3e-09 Score=72.69 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=36.8
Q ss_pred cccCCCcccccccccccc--ceecccCccCCCCCCCCCchhhhhHHhcc---ccCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTK--MVTRKHFSLERIPDKYFSHNGLIMNYRNA---RSQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k--~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~---rSkSCP~CR~~l~ 143 (144)
.+++.+.+|.||||..+. .++ +| -+|+|+||..|+.++ ...+||.||.++.
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~--------~p-~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINF--------FP-CTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTC--------CS-STTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccccCCcCCccCccCccccccc--------cc-cCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 345678899999997521 122 12 139999999999954 3578999999874
No 33
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.75 E-value=1.5e-09 Score=76.08 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=38.2
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhccc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAY 142 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l 142 (144)
..+.+..|.||++...+.|. .+ |+|+||..|+..|- ..+||.||..+
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVT---------LP--CNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEE---------CT--TSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCCccCCcccCceeE---------cC--CCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 34457889999999877666 35 99999999999775 45899999876
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.74 E-value=1.4e-09 Score=77.32 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=38.1
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
++.+..|.||++.....|. .+ |+|+||..|+..|- ..+||.||..+.
T Consensus 49 ~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPIT---------TV--CQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEE---------CT--TSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CccCCCCCcCChHHcCcEE---------ee--CCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 3456789999999877676 35 99999999999663 348999999874
No 35
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.74 E-value=1.3e-09 Score=72.38 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=37.5
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCch-hhhhHHhccccCCChhhhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~rSkSCP~CR~~l~ 143 (144)
.+..|.||++.....|+ .+ |+|. ||..|+..| ..||.||..+.
T Consensus 23 ~~~~C~iC~~~~~~~~~---------~p--CgH~~~C~~C~~~~--~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVF---------VP--CGHLVTCKQCAEAV--DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEE---------ET--TCCBCCCHHHHTTC--SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEE---------cC--CCChhHHHHhhhcC--ccCCCcCcCcc
Confidence 46789999999877777 45 9999 999999988 99999999874
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.68 E-value=2.2e-09 Score=74.52 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=37.6
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc--c-CCChhhhcccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--S-QSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--S-kSCP~CR~~l~ 143 (144)
++.+..|.||++.....|. +.+ |+|.||..|+..|- + .+||.||.++.
T Consensus 19 l~~~~~C~IC~~~~~~p~~--------~~~--CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARL--------CPH--CSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEE--------CTT--TCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCccCCccccCccc--------cCC--CCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 4457899999998765444 246 99999999999773 2 58999998864
No 37
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=6.4e-09 Score=65.80 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=35.6
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc-----cCCChhh
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR-----SQSCLFA 138 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r-----SkSCP~C 138 (144)
.+++.+.+|.||++...+.|. .+ |+|.||..|+.+|- ...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVT---------ID--CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEE---------CT--TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEE---------eC--CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678899999998777666 35 99999999999774 3489998
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.67 E-value=6.2e-09 Score=68.12 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=40.3
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
.++..+..|.||++...+.|. .. |+|+||..|+..|- +.+||.||..+.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~---------~~--CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVI---------VS--TGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEE---------ET--TTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCcccCCCCCccccccCCEE---------cC--CCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 456778999999998877666 35 99999999999763 568999998874
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=2.6e-09 Score=73.61 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=35.9
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc-----CCChhhhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS-----QSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS-----kSCP~CR~~l~ 143 (144)
.+.+|.||++.....+. .+ |+|.||..|+..|-. .+||.||..+.
T Consensus 20 ~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKEPVS---------TK--CDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSSCCB---------CT--TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcCeEE---------CC--CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 36789999998766555 35 999999999997643 37999999764
No 40
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=3.5e-09 Score=75.00 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=39.3
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccccCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rSkSCP~CR~~l~ 143 (144)
..+..|.||++.....|. +++ |+|+||..|+..|-...||.||..+.
T Consensus 20 ~~~~~C~IC~~~~~~pv~--------~~~--CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVC--------LGG--CEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBC--------CCS--SSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccE--------eCC--CCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 447899999998766665 336 99999999999887799999998764
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=6.3e-09 Score=65.79 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=36.0
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccccCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rSkSCP~CR~~l~ 143 (144)
..+..|.||++...+.+. .. |+|+||..|+.. .+.+||.||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~---------l~--CgH~fC~~Ci~~-~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKL---------LP--CLHTLCSGCLEA-SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSC---------ST--TSCCSBTTTCSS-SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEE---------cC--CCCcccHHHHcc-CCCCCCcCCcEee
Confidence 346789999998665444 35 999999999987 4678999998764
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.63 E-value=4.4e-09 Score=77.99 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=37.9
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAY 142 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l 142 (144)
+..+..|.||++.....|. +++ |+|.||..|+..|- ...||.||..+
T Consensus 51 ~~~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMT--------TKE--CLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEE--------ETT--TCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCCCcccChHhhCcCE--------eCC--CCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 4456799999998766555 246 99999999999773 56799999886
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.61 E-value=6.7e-09 Score=72.18 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=38.3
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.+.+.+|.||++...+.+-. ...-.+.. |+|.||..|+..| .+++||.||.++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~--~~~~~~~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQN--GRLIVSTE--CGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHT--TCCEEEET--TSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCcccccccc--CcceEeCC--CCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 35678999999986553110 00001246 9999999999977 5689999999874
No 44
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=5.8e-09 Score=69.07 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=35.9
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCch-hhhhHHhccccCCChhhhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~rSkSCP~CR~~l~ 143 (144)
.+.+|.||++.....|+ .+ |+|. ||..|+.+ ...||+||..+.
T Consensus 24 ~~~~C~IC~~~~~~~~~---------~p--CgH~~~C~~C~~~--~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVF---------VP--CGHLVTCKQCAEA--VDKCPMCYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCCCBCC---------SS--SCCCCBCHHHHHH--CSBCTTTCCBCC
T ss_pred CCCCCCcCCCCCCCEEE---------ec--CCCHHHHHHHhhC--CCCCccCCceec
Confidence 35789999999877776 45 9999 99999974 489999998875
No 45
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.4e-08 Score=66.17 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=38.7
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCch-hhhhHHhccccCCChhhhcccc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~rSkSCP~CR~~l~ 143 (144)
+.+.+.+|.|||+....+|+ .+ |+|. ||..|+. +.+.||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~---------~p--CgH~~~C~~C~~--~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVL---------LP--CRHTCLCDGCVK--YFQQCPMCRQFVQ 57 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEE---------TT--TTBCCSCTTHHH--HCSSCTTTCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEE---------EC--CCChhhhHHHHh--cCCCCCCCCcchh
Confidence 34557899999999888787 45 9999 9999998 4589999999874
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.58 E-value=8e-09 Score=67.35 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=37.8
Q ss_pred cCCCccccccccccccceecccCccCCC-CCCCCCch-hhhhHHhccc--cCCChhhhcccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERI-PDKYFSHN-GLIMNYRNAR--SQSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~L-pn~~C~H~-fCl~Cir~~r--SkSCP~CR~~l~ 143 (144)
.+.+.+|.|||+.....++ + .+ |+|. +|..|+.+|. ++.||+||..+.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~--------~~~p--CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCI--------VHGK--TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEE--------EETT--EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEE--------ECCC--CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3457899999998777665 1 14 9999 8999999664 468999999864
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.56 E-value=1.4e-08 Score=88.16 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=38.8
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc---ccCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA---RSQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~---rSkSCP~CR~~l~ 143 (144)
+.+.+|.||||.....|+ .+ |+|.||..|+..| ++.+||.||..+.
T Consensus 330 ~~~~~C~ICle~~~~pv~---------lp--CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKI---------EP--CGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp TSSSBCTTTSSSBCCEEE---------ET--TCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCccCcCCCCeEE---------eC--CCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 345799999999877776 46 9999999999988 5689999999864
No 48
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.54 E-value=1.2e-08 Score=69.31 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=36.2
Q ss_pred CccccccccccccceecccCccCCCCCCCCCch-hhhhHHhccccCCChhhhcccc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~rSkSCP~CR~~l~ 143 (144)
+.+|.|||+.....|+ .+ |+|. ||..|+..+ +.||+||..+.
T Consensus 18 ~~~C~IC~~~~~~~v~---------~p--CgH~~~C~~C~~~~--~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINSTF---------CP--CGHTVCCESCAAQL--QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCEEE---------ET--TCBCCBCHHHHTTC--SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcEEE---------EC--CCCHHHHHHHHHhc--CcCCCCCchhh
Confidence 5789999999888777 45 9999 999999976 49999999764
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.52 E-value=2.4e-08 Score=70.77 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=39.4
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc--c-CCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--S-QSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r--S-kSCP~CR~~l~ 143 (144)
-.++.+..|.||++.....|. .+ |+|+||..|+..|- + .+||.||..+.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQ---------TP--CGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcCChhhcCeEE---------CC--cCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 355667899999999776666 45 99999999999763 2 48999998874
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.51 E-value=1.5e-08 Score=65.84 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=36.2
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCch-hhhhHHhccc--cCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNAR--SQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~r--SkSCP~CR~~l~ 143 (144)
+.+.+|.|||+.....++ .+.+ |+|. +|..|..++. +..||+||.++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~-------~~~p--CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNI-------IHGR--TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEE-------EETT--EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEE-------EecC--CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 446799999997655444 0125 9998 9999999554 458999999874
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.49 E-value=1.3e-08 Score=71.38 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=37.6
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
..+..|+||++...+.|. .+ |+|.||..|+..|- ..+||.||..+.
T Consensus 21 ~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILADPVE---------TS--CKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhcCcEE---------cC--CCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 346889999999877666 45 99999999999763 458999999864
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.49 E-value=1.8e-08 Score=75.35 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=38.1
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc---CCChhhhcccc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS---QSCLFAVAAYR 143 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS---kSCP~CR~~l~ 143 (144)
+..+..|.||++.....|. .. |+|+||..|+..|-. .+||.||..+.
T Consensus 75 l~~~~~C~IC~~~~~~pv~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVT---------TE--CFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEE---------CT--TSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CccCCEeecCChhhcCCEE---------cC--CCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 4456899999999877666 35 999999999996632 47999999874
No 53
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.44 E-value=4.3e-08 Score=70.51 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=35.7
Q ss_pred CCccccccccccccceec------ccCcc---CCCCCCCCCchhhhhHHhcc--ccCCChhhhccc
Q 032271 88 RNDECGICMENCTKMVTR------KHFSL---ERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAY 142 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~------k~~~~---~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l 142 (144)
.++.|+||++........ ...+. -+++. |+|.|+..||..| ++.+||.||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~--C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV--CNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET--TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc--cCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 478899999875432110 00000 02355 9999999999988 467899999874
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.44 E-value=5.4e-08 Score=72.25 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=39.4
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcccc---CCChhhhccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS---QSCLFAVAAY 142 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~rS---kSCP~CR~~l 142 (144)
.-.++.+..|.||++...+.|. .. |+|.||..|+..|-. .+||.||..+
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~---------~~--CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQ---------AQ--CGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred hccCCcCcCCCCCChhhcCcEE---------CC--CCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456678899999999877666 45 999999999997743 5899999853
No 55
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.28 E-value=1e-07 Score=70.29 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=1.0
Q ss_pred CCccccccccccccceecccC------ccC---CCCCCCCCchhhhhHHhcc--ccCCChhhhccc
Q 032271 88 RNDECGICMENCTKMVTRKHF------SLE---RIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAY 142 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~------~~~---~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l 142 (144)
.++.|+||++........-.. +.+ .++. |+|.|+..||..| ++.+||.||..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~--C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV--CNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC--cCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 368999999875432110000 000 1345 9999999999987 467899999874
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.26 E-value=2e-07 Score=69.12 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=39.9
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
-+++.+..|.||++.....|. .. |+|+||..|+..|- +..||.||..+.
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQ---------TP--CGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCCCCCCCCCCCChhhcCcEE---------CC--CCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 356678899999999877666 45 99999999999763 349999998864
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.23 E-value=3.9e-07 Score=70.04 Aligned_cols=49 Identities=6% Similarity=-0.140 Sum_probs=39.6
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc---cCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
.+...+-.|.||++...+.|. .. |+|+||..||..|- ..+||+||.++.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~---------~~--~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCI---------TP--SGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEE---------CS--SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCCcccCCcCcCCHhcCCeE---------CC--CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 345567899999999888888 45 99999999999652 345999998874
No 58
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.20 E-value=2.1e-07 Score=78.71 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCch-hhhhHHhccccCCChhhhcccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 143 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~rSkSCP~CR~~l~ 143 (144)
+.+..|.|||+.....|+ .+ |+|. ||..|+..| ..||.||..+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~---------lp--CgH~~fC~~C~~~~--~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVF---------IP--CGHLVVCQECAPSL--RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEE---------ET--TCCEEECTTTGGGC--SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEE---------cC--CCChhHhHHHHhcC--CcCCCCCCCcc
Confidence 456899999999887777 35 9999 999999988 79999999875
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.16 E-value=6.7e-07 Score=61.01 Aligned_cols=49 Identities=10% Similarity=-0.202 Sum_probs=40.4
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.++..+-.|.||++.-...|. .. |+|+||-.||..| ...+||+||.+|.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~---------~~--cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVR---------LP--SGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred hcCchheECcccCchhcCCeE---------CC--CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 345668899999999888787 45 9999999999965 3578999998874
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.01 E-value=9.1e-07 Score=60.32 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=33.0
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh-ccc---------cCCChh--hhcc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR-NAR---------SQSCLF--AVAA 141 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-~~r---------SkSCP~--CR~~ 141 (144)
+.+.+|+||++.....+. + .|.+ |+|.||..|++ .|. .-+||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~---~---~l~~--CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQM---T---TIAQ--CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGE---E---EETT--TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccc---e---EcCC--CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 346789999987543222 0 1246 99999999998 222 247999 9987
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.00 E-value=1.7e-06 Score=61.06 Aligned_cols=50 Identities=10% Similarity=-0.212 Sum_probs=40.7
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
..++..+-.|.||++.-...|. .. |+|+||-.||..| ...+||+||.+|.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~---------~~--cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVR---------LP--SGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEE---------ET--TTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred hccCcHhhCCcCccCcccCCeE---------CC--CCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 3445668899999999877777 35 9999999999955 3578999999874
No 62
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.99 E-value=2.4e-06 Score=60.08 Aligned_cols=49 Identities=12% Similarity=-0.170 Sum_probs=40.1
Q ss_pred cccCCCccccccccccccceecccCccCCCCCCCCC-chhhhhHHhcc--ccCCChhhhcccc
Q 032271 84 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFS-HNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 84 id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~-H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
.++..+..|.||++...+.|. .. |+ |+||-.||..| ...+||+||.+|.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~---------~~--cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVV---------LP--SSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEE---------CT--TTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred hcCcHhcCCcCccccccCCeE---------CC--CCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 345668899999999888787 44 88 99999999965 2568999999874
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=6e-06 Score=56.90 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=35.6
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-cc-------CCChh--hhcc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-RS-------QSCLF--AVAA 141 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-rS-------kSCP~--CR~~ 141 (144)
..+..|.||++.....|. ++. |+|+||-.||..| .. ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~--------~~~--cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVK--------NKV--CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEE--------ESS--SCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEE--------cCC--CCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 457889999999877776 356 9999999999955 22 38999 9854
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=1.8e-05 Score=54.21 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=34.6
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCC-----chhhhhHHhcccc----CCChhhhcccc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFS-----HNGLIMNYRNARS----QSCLFAVAAYR 143 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~-----H~fCl~Cir~~rS----kSCP~CR~~l~ 143 (144)
..+.+++|.||++.-.. ..++ +.. |+ |.|-..|+.+|-. .+||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~-----~~~l--~~p--C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDD-----ESPL--ITP--CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCS-----SSCE--ECS--SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccC-----CCee--Eec--cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 34557899999975321 0111 123 86 9999999998842 48999998874
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.44 E-value=5.7e-05 Score=59.20 Aligned_cols=50 Identities=4% Similarity=-0.132 Sum_probs=40.6
Q ss_pred ccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-c--cCCChhhhcccc
Q 032271 83 DKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-R--SQSCLFAVAAYR 143 (144)
Q Consensus 83 ~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-r--SkSCP~CR~~l~ 143 (144)
..++..+..|.||++.-...|. .. |+|+||-.||..| . ..+||+||.+|.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~---------~~--~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCI---------TP--SGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred ccCCcHhhcccCccccCCCCeE---------CC--CCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 4556778999999999888888 45 9999999999955 2 246999998874
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.03 E-value=0.00014 Score=63.78 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=34.7
Q ss_pred CCCccccccccccccceecccCccCCCC-----CCCCCchhhhhHHhcc-cc------------CCChhhhccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIP-----DKYFSHNGLIMNYRNA-RS------------QSCLFAVAAY 142 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lp-----n~~C~H~fCl~Cir~~-rS------------kSCP~CR~~l 142 (144)
+...|||||++.... .+.+| |..|+|.|=..|+-.| ++ .+||.||.++
T Consensus 306 e~~~ECaICys~~l~--------~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRLD--------GGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSCT--------TCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeecC--------CCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 456799999998432 12234 3359999999999877 22 4699999876
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.00026 Score=59.23 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=35.9
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-cc---CCChh--hhcccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-RS---QSCLF--AVAAYR 143 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-rS---kSCP~--CR~~l~ 143 (144)
.+.-|.||++.....|. . +.|+|+||-.||..| +. .+||. ||..+.
T Consensus 180 ~el~CPIcl~~f~DPVt---------s-~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPLI---------S-RKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEEE---------E-SSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCee---------e-CCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45679999999887776 2 239999999999944 32 47999 998763
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.84 E-value=0.00019 Score=52.93 Aligned_cols=26 Identities=8% Similarity=-0.159 Sum_probs=22.5
Q ss_pred CCchhhhhHHhccc---cCCChhhhcccc
Q 032271 118 FSHNGLIMNYRNAR---SQSCLFAVAAYR 143 (144)
Q Consensus 118 C~H~fCl~Cir~~r---SkSCP~CR~~l~ 143 (144)
|.|+||.+|+..|. .++||.|+.++.
T Consensus 20 CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 20 CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 99999999999764 478999999875
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.55 E-value=0.0013 Score=42.76 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=30.9
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhh-----hhHHhccc----cCCChhhhcccc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGL-----IMNYRNAR----SQSCLFAVAAYR 143 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fC-----l~Cir~~r----SkSCP~CR~~l~ 143 (144)
+.+.+.+|-||++.... ++ +.+ |++... ..|+.+|. +.+||+|+..|+
T Consensus 2 e~~~~~~CrIC~~~~~~-------~l--~~P--C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEELGN-------ER--FRA--CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEECSC-------CC--CCS--CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecCCCC-------ce--ecC--cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34668899999986322 11 223 665433 34777774 468999998875
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=45.03 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=34.5
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc----cCCChhhhccc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR----SQSCLFAVAAY 142 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r----SkSCP~CR~~l 142 (144)
+.-++|.||.+.+.... +-+. |+|.|=..|+.+|- +.+||.||..+
T Consensus 13 ~~i~~C~IC~~~i~~g~--------~C~~--C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--------SCET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--------ECSS--SCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCCCcCcchhhHcccCC--------ccCC--CCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 34589999999964322 1246 99999999999772 26799999865
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.84 E-value=0.0023 Score=41.56 Aligned_cols=44 Identities=9% Similarity=-0.114 Sum_probs=36.1
Q ss_pred ccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc--ccCCChhhhcccc
Q 032271 90 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 143 (144)
Q Consensus 90 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--rSkSCP~CR~~l~ 143 (144)
..|.|+.+.....|. ++. ++|+|+..||..| +...||+.+..|.
T Consensus 4 ~~CpIs~~~m~dPV~--------~~~--sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVL--------SPK--SRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEE--------ETT--TTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEE--------eCC--CCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 579999999877777 236 9999999999977 4567999998874
No 72
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.73 E-value=0.14 Score=37.28 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=39.3
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHh---ccccCCChhhhccccC
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYRE 144 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~rSkSCP~CR~~l~~ 144 (144)
....|-||-+.+--.+.-..|-. --. |+-..|-.||. +-.+|+||+|...|+|
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVA--C~e--C~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVA--CNE--CGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCS--CSS--SCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEe--eec--cCChhhHHHHHHHHhccCccccccCCcccc
Confidence 45799999998755444333332 334 88889999998 5567999999999875
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.62 E-value=0.12 Score=34.81 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=21.8
Q ss_pred Cccccccccc--cccceecccCccCCCCCCCCCchhhhhHHhc
Q 032271 89 NDECGICMEN--CTKMVTRKHFSLERIPDKYFSHNGLIMNYRN 129 (144)
Q Consensus 89 e~eCgICME~--~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~ 129 (144)
+..|.||++. ...+.. =.. |+|+||-.|++.
T Consensus 3 e~~C~~C~~~~~~~av~~--------C~~--C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKT--------CVT--CEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEE--------ETT--TTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEE--------CCc--CChHHhHHHCHH
Confidence 5789999974 223220 025 999999999994
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.56 E-value=0.15 Score=40.91 Aligned_cols=45 Identities=9% Similarity=0.047 Sum_probs=33.5
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHhccc----cCCChhhhccc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR----SQSCLFAVAAY 142 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~r----SkSCP~CR~~l 142 (144)
.-.+|-||.+.++.-+. =++ |+|.|=..|+.+|- +..||-|+...
T Consensus 179 ~i~~C~iC~~iv~~g~~--------C~~--C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS--------CET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSCEE--------CSS--SCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCCcc--------cCc--cChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 46899999999654333 356 88888888888662 45899998764
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=83.35 E-value=0.24 Score=36.43 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=31.0
Q ss_pred CccccccccccccceecccCccCCCCCCCCCchhhhhHHh--ccccCCChhhhcccc
Q 032271 89 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NARSQSCLFAVAAYR 143 (144)
Q Consensus 89 e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~rSkSCP~CR~~l~ 143 (144)
-.-|-.|.-....-|. = .+|.+|++|.. ..+|.-||+|-.+|.
T Consensus 28 ~~nCKsCWf~~k~LV~----------C--~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFENKGLVE----------C--NNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSCCSSEEE----------C--SSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cccChhhccccCCeee----------e--cchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 3567777654333333 2 57999999999 678899999987763
No 76
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=63.66 E-value=4.6 Score=30.58 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=31.0
Q ss_pred ccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhc-c------------ccCCChhhhc
Q 032271 85 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN-A------------RSQSCLFAVA 140 (144)
Q Consensus 85 d~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~-~------------rSkSCP~CR~ 140 (144)
+...++.|.+|.+.-.= +. =.. |..+||..|+.. - ..-+||+|+.
T Consensus 59 ~Dg~~d~C~vC~~GG~L-lc--------CD~--Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGNL-IC--------CDF--CHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCSSE-EE--------CSS--SCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCCcE-Ee--------CCC--CCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45568999999986322 22 134 999999999981 1 1236999985
No 77
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=61.86 E-value=1.5 Score=29.40 Aligned_cols=20 Identities=5% Similarity=-0.177 Sum_probs=17.1
Q ss_pred CCchhhhhHHhccccCCChh
Q 032271 118 FSHNGLIMNYRNARSQSCLF 137 (144)
Q Consensus 118 C~H~fCl~Cir~~rSkSCP~ 137 (144)
|+|+||..|-..|...+|..
T Consensus 56 C~~~FC~~C~~~wH~~~C~~ 75 (80)
T 2jmo_A 56 CGFAFCRECKEAYHEGECSA 75 (80)
T ss_dssp CSCCEETTTTEECCSSCSSS
T ss_pred CCCeeccccCccccCCcccc
Confidence 99999999999886677753
No 78
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=58.37 E-value=4.1 Score=26.88 Aligned_cols=40 Identities=13% Similarity=-0.039 Sum_probs=27.1
Q ss_pred ccccccccccccc-eecccCccCCCCCCCCCchhhhhHHh--ccccCCChhh
Q 032271 90 DECGICMENCTKM-VTRKHFSLERIPDKYFSHNGLIMNYR--NARSQSCLFA 138 (144)
Q Consensus 90 ~eCgICME~~~k~-V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~rSkSCP~C 138 (144)
..|--|.-...+. ++ +=++ |++.||+.|=- +-.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y-------~C~~--C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVY-------VCAV--CQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEE-------CCTT--TTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccE-------ECCc--cCcCcccchhHHHHhhccCCcCC
Confidence 3477776554221 11 2377 99999999977 5566799987
No 79
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=50.82 E-value=7.6 Score=25.83 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=16.2
Q ss_pred CCCcCchhhhhchHhhhHHhh
Q 032271 23 GMPALSSKERKATLREFYAII 43 (144)
Q Consensus 23 G~~~~s~~eRkAtireFY~vI 43 (144)
||++||..+-++.++.||..+
T Consensus 1 ~m~~m~~~~~~~~~~~~~~a~ 21 (122)
T 3h3h_A 1 GMEPITQAFAQQFSREWIDAW 21 (122)
T ss_dssp ---CCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 899999988899999999875
No 80
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=50.72 E-value=9.8 Score=28.37 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=30.2
Q ss_pred cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc-------------ccCCChhhhcc
Q 032271 86 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-------------RSQSCLFAVAA 141 (144)
Q Consensus 86 ~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-------------rSkSCP~CR~~ 141 (144)
...++.|.+|.+.-. .+. =.+ |..+||..|+... ..-+|++|+-.
T Consensus 54 Dg~~~~C~vC~dGG~-Llc--------Cd~--Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN-LIC--------CDF--CHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSE-EEE--------CSS--SSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCe-eEe--------cCC--CchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 445788999997622 222 134 9999999999821 11479999753
No 81
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=50.41 E-value=2.9 Score=26.38 Aligned_cols=16 Identities=6% Similarity=0.137 Sum_probs=13.7
Q ss_pred hhhhHHhccccCCChh
Q 032271 122 GLIMNYRNARSQSCLF 137 (144)
Q Consensus 122 fCl~Cir~~rSkSCP~ 137 (144)
-|..|||-+||.+|-.
T Consensus 10 AC~~CirGHRss~C~H 25 (42)
T 1co4_A 10 ACDSCIKSHKAAQCEH 25 (42)
T ss_dssp EETTTTTTSGGGGCCC
T ss_pred ehhhhcCccccCeeEc
Confidence 5899999999999854
No 82
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=40.18 E-value=3.8 Score=27.61 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=17.4
Q ss_pred CCCCCCchhhhhHHhcc---cc-CCChh
Q 032271 114 PDKYFSHNGLIMNYRNA---RS-QSCLF 137 (144)
Q Consensus 114 pn~~C~H~fCl~Cir~~---rS-kSCP~ 137 (144)
|. |+|.||..|-..| .. .+|..
T Consensus 47 ~~--C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 47 PQ--CHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp TT--TCCEECSSSCSBCCTTTTTSCHHH
T ss_pred CC--CCCccccccCCchhhcCCCCChHH
Confidence 55 9999999999988 43 56754
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=39.60 E-value=22 Score=22.45 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=32.3
Q ss_pred ccccccCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc------ccCCChhhhc
Q 032271 81 LSDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA------RSQSCLFAVA 140 (144)
Q Consensus 81 ~s~id~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~------rSkSCP~CR~ 140 (144)
+...+.+.+..|.+|-.. .++++ =.. |..+|=+.|+... ..-.||.|+.
T Consensus 3 ~~~~~~~~~~~C~vC~~~-g~ll~--------CD~--C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 3 LGSYETDHQDYCEVCQQG-GEIIL--------CDT--CPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSCCSSCCCSSCTTTSCC-SSEEE--------CSS--SSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCcccCCCCCCCccCCCC-CcEEE--------CCC--CChhhhhhccCCCCCCCCCCceECccccc
Confidence 445666778999999874 34444 134 7777777887721 2346999975
No 84
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=31.65 E-value=80 Score=22.39 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=32.0
Q ss_pred CeeeeEEeeeceeeEEEEEeeCCCCcCchhhhhchHhhhHHhhh
Q 032271 1 MICFWFCVIETKLFVNVQVYVDGMPALSSKERKATLREFYAIIY 44 (144)
Q Consensus 1 ~~~~~~~~~~~~~iliykvy~dG~~~~s~~eRkAtireFY~vI~ 44 (144)
||-+-|.+=.....++-|-|.+ ++..++++.+++|+..+.
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~----~~~~~~~~~~~~f~~~v~ 40 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQ----FDDDEKQKLIEEVHAVVT 40 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSC----CCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCC----CChhhhHHHHHHHHHHHh
Confidence 6777777767778888999964 677788889999998776
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=28.64 E-value=19 Score=27.48 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=27.7
Q ss_pred CCCccccccccccccceecccCccCCCCCCCCCchhhhhHHhc------cccCCChhhhcc
Q 032271 87 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN------ARSQSCLFAVAA 141 (144)
Q Consensus 87 ~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~------~rSkSCP~CR~~ 141 (144)
..++.|++|-..- ++++ =.. |..+|-+.|... ...-.||.|+..
T Consensus 5 ~~~~~C~~C~~~g-~ll~--------Cd~--C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNGG-DLLC--------CEK--CPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCCE-EEEE--------CSS--SSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC-ceEE--------cCC--CCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 4568899998652 3333 134 777777777751 123469999864
No 86
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=27.05 E-value=18 Score=27.65 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=23.8
Q ss_pred cCchhhhhchHhhh----HHhhhc----hHhhh-hhcccc
Q 032271 26 ALSSKERKATLREF----YAIIYP----SLRQL-ESEFSE 56 (144)
Q Consensus 26 ~~s~~eRkAtireF----Y~vI~P----sL~qL-~~~~~d 56 (144)
.|+.||=+..|++| |+.||| +|.|| ..|+.+
T Consensus 26 p~h~Yei~~~i~~~~~~s~gSiY~~~~~~l~~Le~~GlI~ 65 (180)
T 2rkh_A 26 PMRYSELAGSVRHFTSRIMGPSLELMGISIELLRYEGLVE 65 (180)
T ss_dssp CEEHHHHHHHHHHHHHHHHSCCGGGTTCCTHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHCCCee
Confidence 57889999999999 677888 88888 345543
No 87
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=25.91 E-value=1e+02 Score=22.42 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=31.7
Q ss_pred CeeeeEEeeeceeeEEEEEeeCCCCcCchhhhhchHhhhHHhhhc
Q 032271 1 MICFWFCVIETKLFVNVQVYVDGMPALSSKERKATLREFYAIIYP 45 (144)
Q Consensus 1 ~~~~~~~~~~~~~iliykvy~dG~~~~s~~eRkAtireFY~vI~P 45 (144)
||-+-|.+=....+++-|-|.+- +..+|++-+++|+..+..
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~----~~~~~~~~~~~~~~~i~~ 41 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLAT----SDKERKKMVRELMQVVLA 41 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCC----CHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCEEEEEeCCCC----CHHHHHHHHHHHHHHHhc
Confidence 67777777677788889999753 677788888999877754
No 88
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=24.92 E-value=27 Score=27.95 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=25.8
Q ss_pred eEEEEEeeCCCCcCchhhhhchHhhhHHhhhchHhhhh
Q 032271 14 FVNVQVYVDGMPALSSKERKATLREFYAIIYPSLRQLE 51 (144)
Q Consensus 14 iliykvy~dG~~~~s~~eRkAtireFY~vI~PsL~qL~ 51 (144)
|+=|||-||-+++. -|-..+|..|.|++.||-
T Consensus 91 I~DyKVSVd~~Ss~------~T~~KY~~~i~~~~~~lg 122 (184)
T 2xi5_A 91 IIDYKVSVSNESSV------ITYDKYYELTRDISDRLS 122 (184)
T ss_dssp EEEEEECSSSHHHH------HHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCcchH------HHHHHHHHHHHHHhhhcC
Confidence 56699999876653 466789999999999986
No 89
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.92 E-value=34 Score=26.50 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=26.3
Q ss_pred cccc-cCCCccccccccccccceecccCccCCCCCCCCCchhhhhHHh
Q 032271 82 SDKD-LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR 128 (144)
Q Consensus 82 s~id-~~~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir 128 (144)
+..| ...+..|.||-+-. +.+. =.|..|..+||..||.
T Consensus 71 f~~DeDG~~~yC~wC~~Gg-~l~~--------Cdn~~C~r~FC~~CI~ 109 (159)
T 3a1b_A 71 YQYDDDGYQSYCTICCGGR-EVLM--------CGNNNCCRCFCVECVD 109 (159)
T ss_dssp TCBCTTSSBSSCTTTSCCS-EEEE--------CSSTTTCCEEEHHHHH
T ss_pred cccCCCCCcceeeEecCCC-eEEe--------eCCCCCCCchhHHHHH
Confidence 3444 34578999999863 3233 2444599999999998
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=22.53 E-value=29 Score=25.76 Aligned_cols=43 Identities=12% Similarity=0.211 Sum_probs=26.4
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHhc------cccCCChhhhcc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN------ARSQSCLFAVAA 141 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~------~rSkSCP~CR~~ 141 (144)
.++.|.+|-.. .+.++ =.. |..+|-+.|... ...-.||.|+..
T Consensus 3 ~~~~C~~C~~~-g~ll~--------Cd~--C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG-GELLC--------CEK--CPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC-SSCEE--------CSS--SSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC-Ceeee--------cCC--CCcccCccccCCCCCCCCCCCEECccccCc
Confidence 46789999865 22333 133 776777777641 123469999863
No 91
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=21.39 E-value=60 Score=21.03 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCccccccccccccceecccCccCCCCCCCCCchhhhhHHhcc------ccCCChhhhcc
Q 032271 88 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA------RSQSCLFAVAA 141 (144)
Q Consensus 88 ~e~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~------rSkSCP~CR~~ 141 (144)
.+.+|.||-+. .++++ =.. |+.+|=+.|+... ..-.||.|...
T Consensus 11 ~~~~C~vC~~~-~~ll~--------Cd~--C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLR--------CTH--CAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC-TTCEE--------CSS--SCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC-CeEEE--------CCC--CCCceecccCCCccCcCCCCCEECccccCC
Confidence 45779999865 33444 134 8888888888611 23479999753
No 92
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=21.12 E-value=36 Score=23.77 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.3
Q ss_pred hhhhhchHhhhHHhh
Q 032271 29 SKERKATLREFYAII 43 (144)
Q Consensus 29 ~~eRkAtireFY~vI 43 (144)
+.+||+.|++||--+
T Consensus 71 ~~~~K~~L~~~~~~l 85 (93)
T 3mab_A 71 DEAKKIELKKFHQSL 85 (93)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 457999999999765
No 93
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=20.56 E-value=36 Score=18.62 Aligned_cols=10 Identities=40% Similarity=0.776 Sum_probs=8.2
Q ss_pred hhhchHhhhH
Q 032271 31 ERKATLREFY 40 (144)
Q Consensus 31 eRkAtireFY 40 (144)
-|||||..|.
T Consensus 5 aRk~SLqRFl 14 (21)
T 3ogl_Q 5 ARRASLHRFL 14 (26)
T ss_pred hHHHHHHHHH
Confidence 4899998885
No 94
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=20.01 E-value=56 Score=18.61 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=10.6
Q ss_pred cccccccccccccee
Q 032271 90 DECGICMENCTKMVT 104 (144)
Q Consensus 90 ~eCgICME~~~k~V~ 104 (144)
..||.|.+.+...++
T Consensus 9 ~~C~~C~~~CP~~ai 23 (55)
T 2fdn_A 9 ISCGACEPECPVNAI 23 (55)
T ss_dssp CCCCTTGGGCTTCCE
T ss_pred cChhhHHHHCCcccc
Confidence 568888888765544
Done!