BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032274
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
           Recombinant Human Calcyphosine Delineates A Novel
           Ef-hand-containing Protein Family
 pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
           Recombinant Human Calcyphosine Delineates A Novel
           Ef-hand-containing Protein Family
          Length = 204

 Score = 27.7 bits (60), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 109 NRSLKVKSFTKGLELFKLVADVAEAEG 135
           +RSL    F +GL    LV D AEAEG
Sbjct: 51  SRSLDADEFRQGLAKLGLVLDQAEAEG 77


>pdb|2YZS|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Aquifex Aeolicus
 pdb|2YZS|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
           From Aquifex Aeolicus
          Length = 315

 Score = 26.2 bits (56), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 107 KLNRSLKVKSFTKGLELFKLVADVAEAEGNLHLVFGSL 144
           KLNR +  ++  K LEL+KL+  + E E  L L +G L
Sbjct: 278 KLNRKVSHRTLIK-LELYKLIKHLLEEEVYLPLNYGGL 314


>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
           Aeropyrum Pernix
 pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
           Aeropyrum Pernix
 pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
           Aeropyrum Pernix In Complex With Etheno-Nadp
 pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
           Aeropyrum Pernix In Complex With Etheno-Nadp
 pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
           Aeropyrum Pernix
 pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
           Aeropyrum Pernix
 pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
           Hyperthermophile Aeropyrum Pernix
 pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
           Hyperthermophile Aeropyrum Pernix
          Length = 435

 Score = 26.2 bits (56), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 23/42 (54%)

Query: 79  LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKG 120
           ++P++  + + LM + + W L N N ++ +     +  +T+G
Sbjct: 201 VKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEG 242


>pdb|3RDK|A Chain A, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
           Sp. Jdr-2
 pdb|3RDK|B Chain B, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
           Sp. Jdr-2
 pdb|4E4P|A Chain A, Second Native Structure Of Xylanase A1 From Paenibacillus
           Sp. Jdr-2
 pdb|4E4P|B Chain B, Second Native Structure Of Xylanase A1 From Paenibacillus
           Sp. Jdr-2
 pdb|3RO8|A Chain A, Crystal Structure Of The Catalytic Domain Of Xyna1 From
           Paenibacillus Sp. Jdr-2
 pdb|3RO8|B Chain B, Crystal Structure Of The Catalytic Domain Of Xyna1 From
           Paenibacillus Sp. Jdr-2
 pdb|3RO8|C Chain C, Crystal Structure Of The Catalytic Domain Of Xyna1 From
           Paenibacillus Sp. Jdr-2
 pdb|3RO8|D Chain D, Crystal Structure Of The Catalytic Domain Of Xyna1 From
           Paenibacillus Sp. Jdr-2
 pdb|3RO8|E Chain E, Crystal Structure Of The Catalytic Domain Of Xyna1 From
           Paenibacillus Sp. Jdr-2
 pdb|3RO8|F Chain F, Crystal Structure Of The Catalytic Domain Of Xyna1 From
           Paenibacillus Sp. Jdr-2
 pdb|3RO8|G Chain G, Crystal Structure Of The Catalytic Domain Of Xyna1 From
           Paenibacillus Sp. Jdr-2
 pdb|3RO8|H Chain H, Crystal Structure Of The Catalytic Domain Of Xyna1 From
           Paenibacillus Sp. Jdr-2
          Length = 341

 Score = 25.8 bits (55), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 15/49 (30%)

Query: 66  LTTKKCVPCDTKDLRPMAEDSA------------KHLMPKVVGWDLVNE 102
           L TKK    D  +  P+  D A            KH   KV+ WD+VNE
Sbjct: 93  LNTKKD---DNNNTVPLGRDEALDNLRTHIQTVMKHFGNKVISWDVVNE 138


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,871,669
Number of Sequences: 62578
Number of extensions: 140807
Number of successful extensions: 230
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 5
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)