Query 032274
Match_columns 144
No_of_seqs 160 out of 935
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 11:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2154 Pterin-4a-carbinolamin 99.7 1.3E-17 2.8E-22 122.4 7.7 65 78-144 2-69 (101)
2 PRK00823 phhB pterin-4-alpha-c 99.7 3.2E-17 7E-22 118.1 8.0 65 78-144 2-69 (97)
3 PF01329 Pterin_4a: Pterin 4 a 99.7 2.3E-17 5.1E-22 118.3 6.3 63 79-144 2-67 (95)
4 cd00914 PCD_DCoH_subfamily_b P 99.3 2E-12 4.4E-17 89.4 6.1 47 96-144 1-50 (76)
5 cd00913 PCD_DCoH_subfamily_a P 99.3 6.2E-12 1.3E-16 86.9 5.4 47 96-144 1-50 (76)
6 cd00488 PCD_DCoH PCD_DCoH: The 99.2 1.2E-11 2.5E-16 85.1 5.1 46 96-144 1-49 (75)
7 KOG4073 Pterin carbinolamine d 99.2 1.8E-11 3.9E-16 89.8 4.7 64 79-144 5-73 (104)
8 PF00984 UDPG_MGDP_dh: UDP-glu 65.0 4.9 0.00011 28.8 1.9 18 120-137 18-36 (96)
9 PF03927 NapD: NapD protein; 34.6 1.4E+02 0.0031 20.4 5.2 45 83-129 16-62 (79)
10 cd03527 RuBisCO_small Ribulose 28.6 26 0.00056 25.7 0.7 22 79-100 9-32 (99)
11 KOG1233 Alkyl-dihydroxyacetone 25.4 54 0.0012 30.4 2.3 20 111-130 347-366 (613)
12 COG1004 Ugd Predicted UDP-gluc 24.8 51 0.0011 30.0 2.0 17 121-137 217-234 (414)
13 PRK11750 gltB glutamate syntha 24.8 3.5E+02 0.0076 28.7 8.0 117 8-138 494-614 (1485)
14 PLN02353 probable UDP-glucose 24.1 53 0.0011 29.8 2.0 18 120-137 226-244 (473)
15 TIGR00995 3a0901s06TIC22 chlor 24.1 2E+02 0.0043 24.7 5.3 50 79-129 67-125 (270)
16 COG1724 Predicted RNA binding 22.3 1.1E+02 0.0024 21.0 2.9 34 79-116 4-37 (66)
17 PF04898 Glu_syn_central: Glut 21.5 1.6E+02 0.0036 25.3 4.4 117 8-138 37-159 (287)
18 KOG2721 Uncharacterized conser 20.9 1.4E+02 0.0029 25.5 3.6 49 95-143 15-68 (260)
19 PF07109 Mg-por_mtran_C: Magne 20.7 38 0.00083 24.8 0.3 39 78-123 57-95 (97)
20 PLN02289 ribulose-bisphosphate 20.6 45 0.00098 27.0 0.7 43 54-99 48-95 (176)
No 1
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=99.73 E-value=1.3e-17 Score=122.38 Aligned_cols=65 Identities=23% Similarity=0.545 Sum_probs=60.7
Q ss_pred CCCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 78 DLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 78 ~~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
..+.|+++|+.++|.++|||.+.++ ..+|+|+|+|+||.+|++|||+||.+||++| ||.+.||+|
T Consensus 2 ~~~~lt~~~~~~~l~~l~gW~l~~~--~~~l~r~f~FknF~~a~~F~~~vA~~Ae~~~HHPdi~~~y~~V 69 (101)
T COG2154 2 RASKLTDEELAELLRALPGWELADD--GAKLTRTFKFKNFKQAIAFVNRVAEIAEKLNHHPDIEVVYNRV 69 (101)
T ss_pred CccccCHHHHHHHhcCCCCCEEecC--cceEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCeEEEeeeE
Confidence 3678999999999999999999974 3599999999999999999999999999999 999999986
No 2
>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated
Probab=99.71 E-value=3.2e-17 Score=118.08 Aligned_cols=65 Identities=25% Similarity=0.552 Sum_probs=60.0
Q ss_pred CCCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 78 DLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 78 ~~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
.+++|+++|++++|++||||++.++ +.+|+|+|+|+||.+|++|+|+||.+||++| ||+++|++|
T Consensus 2 ~~~~Ls~~ei~~~l~~l~gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~~V 69 (97)
T PRK00823 2 MAEKLSDEEIAELLPQLPGWTLVGD--RDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDWFNVYNRV 69 (97)
T ss_pred CCCCCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCEEEEcCEE
Confidence 3689999999999999999999753 3589999999999999999999999999999 999999975
No 3
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=99.70 E-value=2.3e-17 Score=118.28 Aligned_cols=63 Identities=27% Similarity=0.557 Sum_probs=56.8
Q ss_pred CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 79 ~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
+++||++||+++|++||||++.+ + .+|+|+|+|+||.+|++|||+||.+||++| ||+++|++|
T Consensus 2 ~~~Ls~~ei~~~L~~l~~W~~~~-~--~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~~V 67 (95)
T PF01329_consen 2 APPLSEEEIAEALAELPGWKLDG-G--GRLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISLGYNRV 67 (95)
T ss_dssp -SB-THHHHHHHHHTSTTSEEET-S--SEEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEEETTEE
T ss_pred CCCCCHHHHHHhhhcCcCCEECC-C--CcEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEecCCcE
Confidence 58999999999999999999997 3 489999999999999999999999999999 999999975
No 4
>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon
Probab=99.35 E-value=2e-12 Score=89.38 Aligned_cols=47 Identities=28% Similarity=0.477 Sum_probs=43.1
Q ss_pred CCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 96 GW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
||++.++. .+|+|+|+|++|.+|++|+|+||.+||++| ||+++||+|
T Consensus 1 gW~~~~~~--~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHPdi~~~~~~V 50 (76)
T cd00914 1 GWTLVDGR--DAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWFNVYNKV 50 (76)
T ss_pred CCeEeCCC--CeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCEEEeccEE
Confidence 79998642 489999999999999999999999999999 999999975
No 5
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=99.28 E-value=6.2e-12 Score=86.85 Aligned_cols=47 Identities=43% Similarity=0.851 Sum_probs=43.0
Q ss_pred CCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 96 GW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
||++.++ ..+|+|+|+|++|.+|++|+|+||.+||++| ||+++|++|
T Consensus 1 gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~~V 50 (76)
T cd00913 1 GWELADD--GLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSLGWGRV 50 (76)
T ss_pred CCcCcCC--CCeEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEeccEE
Confidence 7999764 2489999999999999999999999999999 999999875
No 6
>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc
Probab=99.24 E-value=1.2e-11 Score=85.07 Aligned_cols=46 Identities=30% Similarity=0.632 Sum_probs=42.2
Q ss_pred CCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 96 GW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
||++.+ + .+|+|+|+|++|.+|++|+|+||.+||++| ||+++|++|
T Consensus 1 gW~~~~-~--~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~~V 49 (75)
T cd00488 1 GWELAD-G--DALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISNVYNKV 49 (75)
T ss_pred CCcCCC-C--CcEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEeeeEE
Confidence 799876 2 389999999999999999999999999999 999999875
No 7
>KOG4073 consensus Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1 [Transcription]
Probab=99.20 E-value=1.8e-11 Score=89.83 Aligned_cols=64 Identities=23% Similarity=0.381 Sum_probs=53.0
Q ss_pred CCCCCHHHHHhhCCCC--CCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 79 LRPMAEDSAKHLMPKV--VGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 79 ~~~Ls~~EI~~lL~~L--pGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
+..+...|-...+..+ .||.+.++ ..+|.|+|.|+||.+|++|+.+||..||.+| +|++.||+|
T Consensus 5 ~~~~~~~er~~~ll~~~~agW~l~~~--rd~i~kef~fKdF~~a~~FmtrVal~Ae~~~HHPew~nvynkV 73 (104)
T KOG4073|consen 5 AHRLNESERKLKLLTLKAAGWDLVEG--RDAIFKEFRFKDFNQAFGFMTRVALRAEKLGHHPEWFNVYNKV 73 (104)
T ss_pred hhhhhhhHHhccchhhhhcCCCcccC--ccceeeEEEeecHHHHHHHHHHHHHHHHHhcCCchhheeeeee
Confidence 5666666655544433 59999864 3599999999999999999999999999999 999999976
No 8
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=65.04 E-value=4.9 Score=28.77 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHcC-Ce
Q 032274 120 GLELFKLVADVAEAEG-NL 137 (144)
Q Consensus 120 Al~FvN~VA~lAE~eg-DI 137 (144)
=++|+|.++.+||+.| |+
T Consensus 18 ~iaf~Nel~~lce~~giD~ 36 (96)
T PF00984_consen 18 KIAFANELARLCEKLGIDV 36 (96)
T ss_dssp HHHHHHHHHHHHHHHTSBH
T ss_pred HHHHHHHHHHHHHHcCCCH
Confidence 4899999999999999 54
No 9
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=34.59 E-value=1.4e+02 Score=20.43 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=34.8
Q ss_pred CHHHHHhhCCCCCCCeEe--ccCCcceEEEEEEcCChHHHHHHHHHHHH
Q 032274 83 AEDSAKHLMPKVVGWDLV--NENGILKLNRSLKVKSFTKGLELFKLVAD 129 (144)
Q Consensus 83 s~~EI~~lL~~LpGW~l~--~~~G~~~L~R~f~FkdF~~Al~FvN~VA~ 129 (144)
.-+++.+.|.++||=++- +++| +|.-+..-.+..+.++.+++|..
T Consensus 16 ~~~~v~~~l~~~~gvEVh~~~~~G--KiVVtiE~~~~~~~~~~~~~i~~ 62 (79)
T PF03927_consen 16 RLEEVAEALAAIPGVEVHAVDEDG--KIVVTIEAESSEEEVDLIDAINA 62 (79)
T ss_dssp CHHHHHHHHCCSTTEEEEEEETTT--EEEEEEEESSHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHcCCCcEEEeeCCCC--eEEEEEEeCChHHHHHHHHHHHc
Confidence 457899999999996553 4334 89999999999888887777643
No 10
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=28.59 E-value=26 Score=25.70 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=17.3
Q ss_pred CCCCCHHHHHhhCCCC--CCCeEe
Q 032274 79 LRPMAEDSAKHLMPKV--VGWDLV 100 (144)
Q Consensus 79 ~~~Ls~~EI~~lL~~L--pGW~l~ 100 (144)
.|+||++||.+.+..+ .||.+.
T Consensus 9 lp~lt~~~i~~QI~yll~qG~~~~ 32 (99)
T cd03527 9 LPPLTDEQIAKQIDYIISNGWAPC 32 (99)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 6899999988776654 599875
No 11
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=25.42 E-value=54 Score=30.38 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.1
Q ss_pred EEEcCChHHHHHHHHHHHHH
Q 032274 111 SLKVKSFTKGLELFKLVADV 130 (144)
Q Consensus 111 ~f~FkdF~~Al~FvN~VA~l 130 (144)
+|.|+||.+++.|+..||..
T Consensus 347 S~aFPNFEqGV~f~REvA~q 366 (613)
T KOG1233|consen 347 SFAFPNFEQGVNFFREVAIQ 366 (613)
T ss_pred ccccCcHHHHHHHHHHHHHH
Confidence 67999999999999999864
No 12
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=24.79 E-value=51 Score=29.96 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcC-Ce
Q 032274 121 LELFKLVADVAEAEG-NL 137 (144)
Q Consensus 121 l~FvN~VA~lAE~eg-DI 137 (144)
+.|+|.||.+||+.| |+
T Consensus 217 IsFiNEia~ice~~g~D~ 234 (414)
T COG1004 217 ISFINEIANICEKVGADV 234 (414)
T ss_pred HHHHHHHHHHHHHhCCCH
Confidence 899999999999999 54
No 13
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=24.77 E-value=3.5e+02 Score=28.69 Aligned_cols=117 Identities=12% Similarity=0.010 Sum_probs=69.0
Q ss_pred ccccccCCCCCccchHHHhhhcCCCccceeeeeccCccceeccccccccccccccccccccCCcccCCCCCCCCCCHHHH
Q 032274 8 HLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRPMAEDSA 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~eLs~k~C~PC~g~~~~~Ls~~EI 87 (144)
||--||...-+|..-|.|+|+--+ |+.++-| -.++-|| .+..++. ..+.-+=...+|.-..= ..|-|+..|.
T Consensus 494 plAvLS~~~~~l~~yFkQ~FAQVT--NPPID~i-RE~~vmS-l~~~lG~---~~n~l~~~~~~~~~l~l-~~PiL~~~~~ 565 (1485)
T PRK11750 494 PMAVLSSQPRSIYDYFRQQFAQVT--NPPIDPL-REAHVMS-LATCIGR---EMNVFCETEGHAHRVIF-KSPVLSYSDF 565 (1485)
T ss_pred chhhhcCCCccHHHHhhhcceecc--CCCCchh-hhhceee-eeeeeCC---CcCcCCCCcccCCeEEe-CCceeCHHHH
Confidence 666778766788899999997322 3344433 2223333 3444431 11211113445544332 4578999999
Q ss_pred HhhCCCC-CCCeEeccCCcceEEEEEEcC--ChHHHHHHHHHHHHHHHHcC-Cee
Q 032274 88 KHLMPKV-VGWDLVNENGILKLNRSLKVK--SFTKGLELFKLVADVAEAEG-NLH 138 (144)
Q Consensus 88 ~~lL~~L-pGW~l~~~~G~~~L~R~f~Fk--dF~~Al~FvN~VA~lAE~eg-DI~ 138 (144)
+.+.... ++|+.. .|..+|... ...+|++=+.+-|+.|-+.| .|.
T Consensus 566 ~~l~~~~~~~~~~~------~l~~~f~~~~~~L~~aL~~L~~~A~~Av~~G~~il 614 (1485)
T PRK11750 566 KQLTTLDEEHYRAD------TLDLNYDPEETGLEAAIKRLCDEAEQAVRDGTVLL 614 (1485)
T ss_pred HHHHhccccCCceE------EEEEEEeCChHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 8775532 467654 577888763 37777777777777777777 443
No 14
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=24.10 E-value=53 Score=29.83 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHcC-Ce
Q 032274 120 GLELFKLVADVAEAEG-NL 137 (144)
Q Consensus 120 Al~FvN~VA~lAE~eg-DI 137 (144)
-++|+|.+|.+||+.| |+
T Consensus 226 ~Iaf~NEla~lce~~giD~ 244 (473)
T PLN02353 226 RISSVNAMSALCEATGADV 244 (473)
T ss_pred HHHHHHHHHHHHHHhCCCH
Confidence 3899999999999999 43
No 15
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=24.06 E-value=2e+02 Score=24.71 Aligned_cols=50 Identities=6% Similarity=0.056 Sum_probs=36.6
Q ss_pred CCCCCHHHHHhhCCCCCCCeEeccCCc---------ceEEEEEEcCChHHHHHHHHHHHH
Q 032274 79 LRPMAEDSAKHLMPKVVGWDLVNENGI---------LKLNRSLKVKSFTKGLELFKLVAD 129 (144)
Q Consensus 79 ~~~Ls~~EI~~lL~~LpGW~l~~~~G~---------~~L~R~f~FkdF~~Al~FvN~VA~ 129 (144)
+-+|+++||.+.|..+|=..+.+++|. ......|=|.. .+|-+|++++-.
T Consensus 67 alAL~e~eV~ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~q-edA~afL~~lk~ 125 (270)
T TIGR00995 67 ALTLPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQ-EDAEAFLAQLRK 125 (270)
T ss_pred cccCCHHHHHHHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECCH-HHHHHHHHHHHh
Confidence 568999999999999998877655442 24445566655 459999988743
No 16
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=22.32 E-value=1.1e+02 Score=21.03 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=25.4
Q ss_pred CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCC
Q 032274 79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKS 116 (144)
Q Consensus 79 ~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~Fkd 116 (144)
.++|+..|+.+.|++ .||.++...| =++.|+-+|
T Consensus 4 lp~~~~ke~ik~Le~-~Gf~~vrqkG---SH~q~kHp~ 37 (66)
T COG1724 4 LPRMKAKEVIKALEK-DGFQLVRQKG---SHRQYKHPD 37 (66)
T ss_pred CCcCCHHHHHHHHHh-CCcEEEEeec---ceeEEEcCC
Confidence 688999999999987 4999886544 455666554
No 17
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=21.55 E-value=1.6e+02 Score=25.30 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=57.1
Q ss_pred ccccccCCCCCccchHHHhhhcCCCccceeeeeccCccceeccccccccccccccccccccCCcccCCCCCCCCCCHHHH
Q 032274 8 HLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRPMAEDSA 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~eLs~k~C~PC~g~~~~~Ls~~EI 87 (144)
||-.||.-.-++..-|.|+|+-=+ |+.++-| -.++-|| .+..++ ...+.-+-...+|.--.= +.|-|+..|.
T Consensus 37 PLAvLS~~~~~l~~YFkQ~FAQVT--NPPID~i-RE~~vmS-l~~~lG---~~~n~l~~~~~~~~~l~l-~sPiL~~~~l 108 (287)
T PF04898_consen 37 PLAVLSEKPQNLFDYFKQLFAQVT--NPPIDPI-REELVMS-LRTYLG---PRPNILEETPEHARRLEL-DSPILSNGQL 108 (287)
T ss_dssp --CCC-SS---GGGCEEE----SS--S----TT-TTGGG-B---EEES-----S-TTS-SGGGC-CEEE-SSSB--HHHH
T ss_pred hhHhhcCCCCcHHHHHHHhhhhcc--CCCcchh-hhhheee-cceeeC---CCCCCCCCCCCCceEEEe-cCCEECHHHH
Confidence 566677766788899999997443 3334433 2223333 444443 112222223344543332 4578999999
Q ss_pred HhhCCC-CCCCeEeccCCcceEEEEEEc----CChHHHHHHHHHHHHHHHHcC-Cee
Q 032274 88 KHLMPK-VVGWDLVNENGILKLNRSLKV----KSFTKGLELFKLVADVAEAEG-NLH 138 (144)
Q Consensus 88 ~~lL~~-LpGW~l~~~~G~~~L~R~f~F----kdF~~Al~FvN~VA~lAE~eg-DI~ 138 (144)
+.+... -++|+.. .|...|.- .+..+|++=+.+-|+-|-++| .|.
T Consensus 109 ~~l~~~~~~~~~~~------~l~~~f~~~~~~~~L~~aL~~l~~ea~~Av~~G~~il 159 (287)
T PF04898_consen 109 EKLRSLDDPGFKAA------TLDATFPAEGGDEGLEEALDRLCEEAEAAVREGANIL 159 (287)
T ss_dssp HHHHHH--CCCCEE------EEESEEESTTSTTCHHHHHHHHHHHHHHHHHCT-SEE
T ss_pred HHHHHhhccCCCcc------EEEEEEECCcChhHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 875542 2688865 47777874 678888888887777777777 443
No 18
>KOG2721 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.95 E-value=1.4e+02 Score=25.47 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=33.3
Q ss_pred CCCeEeccCC--cceEEEEE--EcCChHHHHHHHHHHHHHHHHcC-CeeeccCC
Q 032274 95 VGWDLVNENG--ILKLNRSL--KVKSFTKGLELFKLVADVAEAEG-NLHLVFGS 143 (144)
Q Consensus 95 pGW~l~~~~G--~~~L~R~f--~FkdF~~Al~FvN~VA~lAE~eg-DI~l~Yg~ 143 (144)
+.|-+.--|| ..+..+.. .=+|=..|+.+||+.|..-=++- ||.+.||.
T Consensus 15 ~~~iVvRIDGr~FhrFs~~h~FeKPNDe~aLnLMnscA~~Vl~ef~DIv~AyG~ 68 (260)
T KOG2721|consen 15 PCWIVVRIDGRDFHRFSKVHEFEKPNDETALNLMNSCASAVLEEFPDIVFAYGY 68 (260)
T ss_pred ceEEEEEEcCcchhhhhhhhcccCCChHHHHHHHHHHHHHHHHhccceEEEecc
Confidence 4687663334 23333333 33456789999999999776666 99999984
No 19
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=20.72 E-value=38 Score=24.80 Aligned_cols=39 Identities=15% Similarity=0.401 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEcCChHHHHHH
Q 032274 78 DLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLEL 123 (144)
Q Consensus 78 ~~~~Ls~~EI~~lL~~LpGW~l~~~~G~~~L~R~f~FkdF~~Al~F 123 (144)
.+.+..++++.+.|.+ .||++... .++..-|. |.+++++
T Consensus 57 ~i~~~~e~~l~~~l~~-~g~~~~r~---~ris~gFY---~S~llE~ 95 (97)
T PF07109_consen 57 RIYPHREEDLRRALAA-AGWRIGRT---ERISSGFY---ISQLLEA 95 (97)
T ss_pred cEEEeCHHHHHHHHHh-CCCeeeec---ccccCcCh---HHHHhhc
Confidence 3567899999999988 79999753 36776666 3556654
No 20
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=20.57 E-value=45 Score=26.99 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=27.2
Q ss_pred cccccccccccccc---cCCcccCCCCCCCCCCHHHHHhhCCCC--CCCeE
Q 032274 54 LYGFRTFCTGQDLT---TKKCVPCDTKDLRPMAEDSAKHLMPKV--VGWDL 99 (144)
Q Consensus 54 ~~~~~~~~~m~eLs---~k~C~PC~g~~~~~Ls~~EI~~lL~~L--pGW~l 99 (144)
.+|-|..| |+.+. .++=+--+ =.|+||++||.+.+.=+ .||..
T Consensus 48 sng~rv~c-mqvw~~~~~kkfETfS--YLPpLtdeqI~kQVeYli~~GW~p 95 (176)
T PLN02289 48 SNGGRVSC-MQVWPPIGKKKFETLS--YLPDLTDEELAKEVDYLLRNKWVP 95 (176)
T ss_pred cCCceeEE-EEeecccCccceeeee--cCCCCCHHHHHHHHHHHHhCCCee
Confidence 35778888 44443 34433333 47899999998876532 48864
Done!