Query 032274
Match_columns 144
No_of_seqs 160 out of 935
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 19:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032274.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032274hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ru0a_ d.74.1.1 (A:) DcoH-lik 99.6 4E-17 2.9E-21 115.5 4.9 65 78-144 1-70 (100)
2 d1dcpa_ d.74.1.1 (A:) Pterin-4 99.6 6.3E-17 4.6E-21 114.3 4.1 62 81-144 2-68 (99)
3 d1usma_ d.74.1.1 (A:) Pterin-4 99.2 3.9E-12 2.9E-16 86.4 5.2 47 96-144 2-51 (80)
4 d1mv8a1 a.100.1.4 (A:203-300) 52.3 3.5 0.00026 26.7 2.1 19 119-137 17-36 (98)
5 d1ea0a2 c.1.4.1 (A:423-1193) A 46.9 9.7 0.0007 33.4 4.7 113 8-135 62-178 (771)
6 d1dlja1 a.100.1.4 (A:197-294) 44.8 5.5 0.0004 25.6 2.1 17 119-135 17-33 (98)
7 d1ofda2 c.1.4.1 (A:431-1239) A 36.4 34 0.0024 30.0 6.5 112 8-135 50-164 (809)
8 d1e0na_ b.72.1.1 (A:) Hypothet 28.1 11 0.00077 19.5 1.0 11 95-105 1-11 (27)
9 d1uw4a_ d.58.7.4 (A:) RNA proc 27.9 62 0.0045 20.5 5.3 49 79-127 10-65 (91)
10 d1svdm1 d.73.1.1 (M:3-110) Rib 26.5 7.2 0.00053 26.3 0.3 23 78-100 16-40 (108)
11 d1bxni_ d.73.1.1 (I:) Ribulose 24.1 6.5 0.00047 27.3 -0.4 23 78-100 10-34 (129)
12 d1bwvs_ d.73.1.1 (S:) Ribulose 23.0 9.2 0.00067 26.9 0.3 23 78-100 10-34 (138)
13 d1rbli_ d.73.1.1 (I:) Ribulose 21.1 8.1 0.00059 26.0 -0.4 23 78-100 16-40 (109)
14 d1wdds_ d.73.1.1 (S:) Ribulose 20.3 11 0.00081 25.9 0.2 23 78-100 17-41 (122)
No 1
>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.65 E-value=4e-17 Score=115.51 Aligned_cols=65 Identities=20% Similarity=0.387 Sum_probs=59.3
Q ss_pred CCCCCCHHHHHhhCCCC--CCCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 78 DLRPMAEDSAKHLMPKV--VGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 78 ~~~~Ls~~EI~~lL~~L--pGW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
++++||++||+++|++| +||++.++ ..+|+|+|+|+||.+|++|+|+||.+||++| ||++.|++|
T Consensus 1 da~~Lt~~ei~~~L~~L~~~gW~~~~~--~~~L~r~f~f~~f~~a~~F~~~va~~ae~~~HHPdi~~~y~~V 70 (100)
T d1ru0a_ 1 DAQWLTAEERDQLIPGLKAAGWSELSE--RDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNVYNKV 70 (100)
T ss_dssp CCSBCCHHHHHHHHHHHHHTTCEECSS--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEE
T ss_pred CcccCCHHHHHHHHhhCCCCCCEEECC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEeccEE
Confidence 46899999999999988 79999753 3589999999999999999999999999999 999999975
No 2
>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.63 E-value=6.3e-17 Score=114.30 Aligned_cols=62 Identities=19% Similarity=0.422 Sum_probs=57.4
Q ss_pred CCCHHHHHhhCCCCC--CCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 81 PMAEDSAKHLMPKVV--GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 81 ~Ls~~EI~~lL~~Lp--GW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
+||++||+++|++|+ ||++.+ |..+|+|+|+|+||.+|++|+|+||.+||++| ||++.|++|
T Consensus 2 ~Ls~ee~~~~l~~L~~~GW~~~~--~~~~L~r~f~F~~f~~a~~Fv~~Va~~ae~~~HHP~i~~~y~~V 68 (99)
T d1dcpa_ 2 RLSAEERDQLLPNLRAVGWNELE--GRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKV 68 (99)
T ss_dssp CCCHHHHHHHHHHHHHHTCEECT--TSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEE
T ss_pred CCCHHHHHHHHHhCCCCCCEEEc--CCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCccEEEeeeEE
Confidence 799999999999997 999975 33589999999999999999999999999999 999999975
No 3
>d1usma_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Thermus thermophilus [TaxId: 274]}
Probab=99.23 E-value=3.9e-12 Score=86.42 Aligned_cols=47 Identities=21% Similarity=0.493 Sum_probs=41.7
Q ss_pred CCeEeccCCcceEEEEEEcCChHHHHHHHHHHHHHHHHcC---CeeeccCCC
Q 032274 96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEG---NLHLVFGSL 144 (144)
Q Consensus 96 GW~l~~~~G~~~L~R~f~FkdF~~Al~FvN~VA~lAE~eg---DI~l~Yg~l 144 (144)
+|++.++ ..+|+|+|+|+||.+|++|+|+||.+||++| ||++.|++|
T Consensus 2 ~W~~~~~--~~~L~r~f~f~~f~~~~~Fv~~va~~ae~~~HHPdi~~~~~~V 51 (80)
T d1usma_ 2 DWEEREN--LKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRV 51 (80)
T ss_dssp CCEEC-----CCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETTEE
T ss_pred CCeEcCC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEcCeE
Confidence 5999863 3589999999999999999999999999999 999999975
No 4
>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=52.26 E-value=3.5 Score=26.72 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHcC-Ce
Q 032274 119 KGLELFKLVADVAEAEG-NL 137 (144)
Q Consensus 119 ~Al~FvN~VA~lAE~eg-DI 137 (144)
.-+.|+|.++.+||+.| |+
T Consensus 17 ~kIsf~Nel~~lc~~~g~d~ 36 (98)
T d1mv8a1 17 AKVTFANEIGNIAKAVGVDG 36 (98)
T ss_dssp HHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHhhhhH
Confidence 45899999999999999 53
No 5
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=46.89 E-value=9.7 Score=33.44 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=73.6
Q ss_pred ccccccCCCCCccchHHHhhhcCCCccceeeeeccCccceeccccccccccccccccccccCCcccCCCCCCCCCCHHHH
Q 032274 8 HLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRPMAEDSA 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~eLs~k~C~PC~g~~~~~Ls~~EI 87 (144)
||-.||.-.-++-.-|.|+|+-=+ |+.++-| -.+.-|| .+.+++ ...+.-+-+..+|.-..= +.|-||.+|+
T Consensus 62 PlAvLS~~~r~l~~YFkQ~FAQVT--NPPID~i-RE~~VmS-l~~~lG---~~~Nil~~~~~~~~~l~l-~sPILs~~e~ 133 (771)
T d1ea0a2 62 PIAVLSDKYRGLHHFFRQNFSQVT--NPPIDSL-RERRVMS-LKTRLG---NLGNILDEDETQTRLLQL-ESPVLTTAEF 133 (771)
T ss_dssp CCGGGCSSCCCGGGTEEECCCCSS--SCCCCTT-TTGGGCC-CCEEES---CCSCTTCCSGGGSCSEEE-SCSBCCHHHH
T ss_pred hhhhhcCCCCCchhhcccCccccC--CCCccHH-Hhhcccc-ccceeC---CCCCCCCCCccCCCEEEe-CCCccCHHHH
Confidence 566678766788899999997433 4445544 2233344 556654 344554556777765543 5678999999
Q ss_pred HhhCCCCCCCeEeccCCcceEEEEEEcCC----hHHHHHHHHHHHHHHHHcC
Q 032274 88 KHLMPKVVGWDLVNENGILKLNRSLKVKS----FTKGLELFKLVADVAEAEG 135 (144)
Q Consensus 88 ~~lL~~LpGW~l~~~~G~~~L~R~f~Fkd----F~~Al~FvN~VA~lAE~eg 135 (144)
+.+. +.++|+.. .|..+|.... ..+|++=+.+-|+-|-+.|
T Consensus 134 ~~i~-~~~~~~~~------~id~~f~~~~g~~~L~~AL~~l~~eA~~AV~~G 178 (771)
T d1ea0a2 134 RAMR-DYMGDTAA------EIDATFPVDGGPEALRDALRRIRQETEDAVRGG 178 (771)
T ss_dssp HHHH-HHHGGGEE------EEECEEESTTCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-ccCCCCeE------EEEEEEeCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 8775 44677643 5888898754 7777777766666666666
No 6
>d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=44.77 E-value=5.5 Score=25.64 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHcC
Q 032274 119 KGLELFKLVADVAEAEG 135 (144)
Q Consensus 119 ~Al~FvN~VA~lAE~eg 135 (144)
.=+.|+|.++.+||+.|
T Consensus 17 ~kIsf~Ne~~~lc~~~g 33 (98)
T d1dlja1 17 LRVAYFNELDTYAESRK 33 (98)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34899999999999999
No 7
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}
Probab=36.37 E-value=34 Score=30.03 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=71.5
Q ss_pred ccccccCCCCCccchHHHhhhcCCCccceeeeeccCccceeccccccccccccccccccccCCcccCCCCCCCCCCHHHH
Q 032274 8 HLLSLSRPQVPLRSVFESLFARNGRSNIRVTEIFQNRVGLFLSRNSLYGFRTFCTGQDLTTKKCVPCDTKDLRPMAEDSA 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~eLs~k~C~PC~g~~~~~Ls~~EI 87 (144)
||-.||.-.-+|..-|.|+|+-= .|+.++-| -.++-|| .+.+++ ...+.-+-+.++|.-..= ..|-|+.+|+
T Consensus 50 PLAvLS~~~r~l~~YFkQ~FAQV--TNPPID~i-RE~~VmS-l~~~lG---~~~Nil~~~~~~~~~l~l-~sPiLs~~el 121 (809)
T d1ofda2 50 PLAVLSHKPRLLYDYFKQRFAQV--TNPPIDPL-RENLVMS-LAMFLG---KRGNLLEPKAESARTIKL-RSPLVNEVEL 121 (809)
T ss_dssp CCTTTCSSCCCGGGGEEECCCCS--SSCCCCTT-TTGGGCB-CCEEES---CCCCSSSCCGGGGCEEEE-SCSBCCHHHH
T ss_pred HhHhhcCCCCCcchhcccccccC--CCCCccHH-Hhhcccc-ccceec---CCCCCCCCCCCCCCeEEE-CCCccCHHHH
Confidence 56667776678889999999732 24445444 2223344 566654 234444455666654442 4578999999
Q ss_pred HhhCCCCCCCeEeccCCcceEEEEEEcC---ChHHHHHHHHHHHHHHHHcC
Q 032274 88 KHLMPKVVGWDLVNENGILKLNRSLKVK---SFTKGLELFKLVADVAEAEG 135 (144)
Q Consensus 88 ~~lL~~LpGW~l~~~~G~~~L~R~f~Fk---dF~~Al~FvN~VA~lAE~eg 135 (144)
++... .+|+.. .|..+|... +..+|++=+.+=|+.|-+.|
T Consensus 122 ~~i~~--~~~~~~------~i~~~f~~~g~~~L~~aL~~l~~ea~~AV~~G 164 (809)
T d1ofda2 122 QAIKT--GQLQVA------EVSTLYDLDGVNSLEDALTNLVKTAIATVQAG 164 (809)
T ss_dssp HHHHH--SSSCEE------EEECEEECSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHc--CCCceE------EEeEEecCCchHHHHHHHHHHHHHHHHHHHCC
Confidence 87632 466654 577888774 68888877777677776777
No 8
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.05 E-value=11 Score=19.52 Aligned_cols=11 Identities=45% Similarity=1.223 Sum_probs=8.7
Q ss_pred CCCeEeccCCc
Q 032274 95 VGWDLVNENGI 105 (144)
Q Consensus 95 pGW~l~~~~G~ 105 (144)
|||++..++|.
T Consensus 1 pgweiihengr 11 (27)
T d1e0na_ 1 PGWEIIHENGR 11 (27)
T ss_dssp CCEEEEESSSS
T ss_pred CCceeeecCCc
Confidence 79999977663
No 9
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.94 E-value=62 Score=20.48 Aligned_cols=49 Identities=6% Similarity=0.002 Sum_probs=33.9
Q ss_pred CCCCCHHHHHhhCCCCCCCeE---ec-c--CCcceEEEEE-EcCChHHHHHHHHHH
Q 032274 79 LRPMAEDSAKHLMPKVVGWDL---VN-E--NGILKLNRSL-KVKSFTKGLELFKLV 127 (144)
Q Consensus 79 ~~~Ls~~EI~~lL~~LpGW~l---~~-~--~G~~~L~R~f-~FkdF~~Al~FvN~V 127 (144)
+|.||++|..+.|.-++.|.. .. + .+...-.|.| .|++..+..+|.+.+
T Consensus 10 PP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f 65 (91)
T d1uw4a_ 10 PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF 65 (91)
T ss_dssp CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 467999999999987764321 11 1 1223556666 899999999988775
No 10
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=26.49 E-value=7.2 Score=26.28 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=17.2
Q ss_pred CCCCCCHHHHHhhCCCC--CCCeEe
Q 032274 78 DLRPMAEDSAKHLMPKV--VGWDLV 100 (144)
Q Consensus 78 ~~~~Ls~~EI~~lL~~L--pGW~l~ 100 (144)
=.|+||++||.+.+..+ .||.+-
T Consensus 16 yLP~Ltde~I~~QV~yll~qGw~~~ 40 (108)
T d1svdm1 16 YLPPMNAERIRAQIKYAIAQGWSPG 40 (108)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCEee
Confidence 37899999988766544 499864
No 11
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=24.09 E-value=6.5 Score=27.32 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHhhCCCC--CCCeEe
Q 032274 78 DLRPMAEDSAKHLMPKV--VGWDLV 100 (144)
Q Consensus 78 ~~~~Ls~~EI~~lL~~L--pGW~l~ 100 (144)
=+|+||++||.+.+..+ .||.+-
T Consensus 10 yLP~Ltd~~I~~QV~yll~qG~~i~ 34 (129)
T d1bxni_ 10 FLPELTDEQITKQLEYCLNQGWAVG 34 (129)
T ss_dssp TSSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCEee
Confidence 36899999998876655 499874
No 12
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=22.97 E-value=9.2 Score=26.85 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHhhCCCC--CCCeEe
Q 032274 78 DLRPMAEDSAKHLMPKV--VGWDLV 100 (144)
Q Consensus 78 ~~~~Ls~~EI~~lL~~L--pGW~l~ 100 (144)
=.|+||++||.+.+..+ .||.+.
T Consensus 10 yLP~LtdeqI~~QV~yll~qGw~~~ 34 (138)
T d1bwvs_ 10 FLPDLTDEQIKKQIDYMISKKLAIG 34 (138)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCCCHHHHHHHHHHHHcCCCEee
Confidence 36899999998766544 499864
No 13
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=21.10 E-value=8.1 Score=26.04 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHhhCCCC--CCCeEe
Q 032274 78 DLRPMAEDSAKHLMPKV--VGWDLV 100 (144)
Q Consensus 78 ~~~~Ls~~EI~~lL~~L--pGW~l~ 100 (144)
=.|+||++||.+.+..+ .||.+-
T Consensus 16 yLP~Ltd~~I~~QV~yll~qGw~i~ 40 (109)
T d1rbli_ 16 YLPPLSDRQIAAQIEYMIEQGFHPL 40 (109)
T ss_dssp TSSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCCCCHHHHHHHHHHHHhCCCcee
Confidence 47899999998766554 499864
No 14
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=20.30 E-value=11 Score=25.86 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHhhCCCC--CCCeEe
Q 032274 78 DLRPMAEDSAKHLMPKV--VGWDLV 100 (144)
Q Consensus 78 ~~~~Ls~~EI~~lL~~L--pGW~l~ 100 (144)
-.|+||++||.+.+.-+ .||...
T Consensus 17 yLP~ltd~qI~~QI~yll~qGw~p~ 41 (122)
T d1wdds_ 17 YLPPLTVEDLLKQIEYLLRSKWVPC 41 (122)
T ss_dssp TSSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCeee
Confidence 37899999998876544 499764
Done!