Query 032276
Match_columns 144
No_of_seqs 97 out of 99
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 19:27:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q90_R Cytochrome B6-F complex 99.8 2.9E-23 9.8E-28 136.3 -1.5 48 56-103 2-49 (49)
2 1vf5_D Rieske iron-sulfur prot 99.7 1.1E-18 3.7E-23 133.4 -2.6 91 53-143 3-93 (179)
3 1rfs_A Rieske protein; iron-su 98.6 2.2E-08 7.5E-13 74.1 2.3 52 92-143 1-52 (139)
4 3azc_A Cytochrome B6-F complex 97.4 4.4E-07 1.5E-11 67.6 0.0 43 101-143 4-46 (133)
5 2qjy_C Ubiquinol-cytochrome C 97.7 2.7E-06 9.4E-11 65.8 -1.4 43 60-102 6-48 (187)
6 3cx5_E Cytochrome B-C1 complex 97.2 6.8E-05 2.3E-09 58.0 0.2 72 60-141 17-88 (185)
7 1pp9_E Ubiquinol-cytochrome C 92.9 0.0046 1.6E-07 48.4 -3.5 35 60-94 27-64 (196)
8 2pq4_B Periplasmic nitrate red 60.0 2.7 9.2E-05 25.1 0.7 17 62-78 2-18 (35)
9 4aay_B AROB; oxidoreductase, r 59.3 1.9 6.7E-05 32.9 0.0 32 62-95 9-40 (175)
10 3ner_A Cytochrome B5 type B; h 37.3 11 0.00038 25.8 1.0 29 111-139 32-60 (92)
11 2ibj_A Cytochrome B5, CYTB5; F 34.1 10 0.00034 25.5 0.3 30 110-139 28-57 (88)
12 1cxy_A Cytochrome B5; helix, b 32.8 16 0.00054 24.7 1.2 29 111-139 30-58 (90)
13 1cyo_A Cytochrome B5; electron 32.7 11 0.00037 25.8 0.3 29 111-139 27-55 (93)
14 2w0y_A APH, alkaline phosphata 30.8 10 0.00036 33.6 0.0 22 58-79 7-28 (473)
15 1x3x_A Cytochrome B5; hemoprot 29.9 21 0.00071 23.6 1.4 28 111-139 26-53 (82)
16 1hko_A Cytochrome B5; electron 28.6 12 0.00041 26.3 0.0 29 111-139 31-59 (104)
17 3tc2_A Kunitz-type proteinase 28.5 28 0.00094 26.8 2.0 19 89-107 21-40 (187)
18 1p5s_A RAS GTPase-activating-l 27.9 13 0.00043 29.1 0.0 15 94-108 2-16 (203)
19 1mj4_A Sulfite oxidase; cytoch 24.4 20 0.00068 23.8 0.5 22 111-132 28-49 (82)
20 3lf5_A Cytochrome B5 reductase 24.1 14 0.00049 25.1 -0.3 30 110-139 27-56 (88)
21 2keo_A Probable E3 ubiquitin-p 23.8 20 0.00067 25.8 0.4 15 59-73 22-36 (112)
No 1
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=99.85 E-value=2.9e-23 Score=136.30 Aligned_cols=48 Identities=46% Similarity=0.921 Sum_probs=38.2
Q ss_pred CCCCCCCchhHHHHHHHhhhccccccceeccceEEEeecCCCCCCCCc
Q 032276 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGG 103 (144)
Q Consensus 56 ~~~~vPDm~RRqlMNlLl~Gava~~a~g~LyP~v~fFvPP~sgG~gGG 103 (144)
++++||||+||||||+|++|++++++++++|||++|||||.++|+|||
T Consensus 2 ~~~~~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~~gg~ggg 49 (49)
T 1q90_R 2 ASSEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGGGGGG 49 (49)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred CcccCCChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCccCCCCCC
Confidence 467999999999999999999999999999999999999999998886
No 2
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.67 E-value=1.1e-18 Score=133.44 Aligned_cols=91 Identities=42% Similarity=0.698 Sum_probs=78.2
Q ss_pred ccCCCCCCCCchhHHHHHHHhhhccccccceeccceEEEeecCCCCCCCCccccccccCCcchhhhhhhhCCCCCchhhc
Q 032276 53 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTE 132 (144)
Q Consensus 53 ~s~~~~~vPDm~RRqlMNlLl~Gava~~a~g~LyP~v~fFvPP~sgG~gGGv~AKDalGNdI~as~wL~th~~GdR~Lvq 132 (144)
.+.+.+++|||+||+||+++++|++++.++++++|+++||.||.....+++.+++|..|++|.+++|+.+.++|++.+++
T Consensus 3 ~~~~~~~~~~~~RR~Fl~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~~ 82 (179)
T 1vf5_D 3 QFTESMDVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQ 82 (179)
T ss_dssp ---------CCCCCTTSCTTHHHHHHHHHHHHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEES
T ss_pred cccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEEe
Confidence 45666789999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred cCCCCceeEEe
Q 032276 133 GLKDFSHLQLI 143 (144)
Q Consensus 133 GLKGDpTYLiv 143 (144)
+++|++.|++.
T Consensus 83 ~~~g~~~~lv~ 93 (179)
T 1vf5_D 83 GLKGDPTYIVV 93 (179)
T ss_dssp CSSSSCEECCB
T ss_pred ccCCCeEEEEE
Confidence 99999988764
No 3
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=98.55 E-value=2.2e-08 Score=74.11 Aligned_cols=52 Identities=62% Similarity=1.069 Sum_probs=36.3
Q ss_pred eecCCCCCCCCccccccccCCcchhhhhhhhCCCCCchhhccCCCCceeEEe
Q 032276 92 FAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKDFSHLQLI 143 (144)
Q Consensus 92 FvPP~sgG~gGGv~AKDalGNdI~as~wL~th~~GdR~LvqGLKGDpTYLiv 143 (144)
|+||+++++|||+.|+|+.||.|.+++|+++-++|.+..+.++.|++.+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~ 52 (139)
T 1rfs_A 1 FVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVV 52 (139)
T ss_dssp ------------CBCBCTTSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEB
T ss_pred CcCCccCcccceEEeecCCCCEEEeehhHhhCCCCccEEEEecCCCeEEEEE
Confidence 8999999999999999999999999999999999999888888888877663
No 4
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=97.36 E-value=4.4e-07 Score=67.60 Aligned_cols=43 Identities=42% Similarity=0.740 Sum_probs=39.6
Q ss_pred CCccccccccCCcchhhhhhhhCCCCCchhhccCCCCceeEEe
Q 032276 101 GGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKDFSHLQLI 143 (144)
Q Consensus 101 gGGv~AKDalGNdI~as~wL~th~~GdR~LvqGLKGDpTYLiv 143 (144)
|||++|||+.||+|++++||+..++|++.+++.|-|++.+++.
T Consensus 4 ~~~~~~~~~~g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~ 46 (133)
T 3azc_A 4 EGRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIV 46 (133)
Confidence 6899999999999999999999999999999999888876653
No 5
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=97.71 E-value=2.7e-06 Score=65.80 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHhhhccccccceeccceEEEeecCCCCCCCC
Q 032276 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGG 102 (144)
Q Consensus 60 vPDm~RRqlMNlLl~Gava~~a~g~LyP~v~fFvPP~sgG~gG 102 (144)
..|++||+||++++++++++.++++++|+++|+.|+.+..+.+
T Consensus 6 ~~~~~RR~Fl~~~~~~~~~~~a~~~~~p~v~~~~p~~~~~a~~ 48 (187)
T 2qjy_C 6 DHAGTRRDFLYYATAGAGAVATGAAVWPLINQMNPSADVQALA 48 (187)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTTSCCC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccc
Confidence 4689999999999999999999999999999999998866554
No 6
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=97.16 E-value=6.8e-05 Score=58.00 Aligned_cols=72 Identities=10% Similarity=-0.012 Sum_probs=47.7
Q ss_pred CCCchhHHHHHHHhhhccccccceeccceEEEeecCCCCCCCCccccccccCCcchhhhhhhhCCCCCchhhccCCCCce
Q 032276 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKDFSH 139 (144)
Q Consensus 60 vPDm~RRqlMNlLl~Gava~~a~g~LyP~v~fFvPP~sgG~gGGv~AKDalGNdI~as~wL~th~~GdR~LvqGLKGDpT 139 (144)
..+|+||+||++++++++++.+++++++++.|+.+.... ..+.| ...|.+. +.+-++|+...++ +.|.|.
T Consensus 17 ~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~a----~~~v~V~--~s~l~~G~~~~v~-~~g~pv 86 (185)
T 3cx5_E 17 NDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTAT---ADVLA----MAKVEVN--LAAIPLGKNVVVK-WQGKPV 86 (185)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC---GGGCC----CCCEEEE--GGGCCTTCEEEEE-ETTEEE
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCC---cchhc----cCcEEEE--HHHCCCCCeEEEE-ECCeEE
Confidence 468999999999999998888888888888777775332 12333 2234441 5555677765554 456665
Q ss_pred eE
Q 032276 140 LQ 141 (144)
Q Consensus 140 YL 141 (144)
++
T Consensus 87 ~v 88 (185)
T 3cx5_E 87 FI 88 (185)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 7
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=92.88 E-value=0.0046 Score=48.37 Aligned_cols=35 Identities=3% Similarity=-0.004 Sum_probs=25.3
Q ss_pred CCCchhHHHHHHHhhhccccccc---eeccceEEEeec
Q 032276 60 VPDMGKRQLMNLLLLGAVSLPTG---FMLVPYATFFAP 94 (144)
Q Consensus 60 vPDm~RRqlMNlLl~Gava~~a~---g~LyP~v~fFvP 94 (144)
-.|++||.||++++++++++.++ .+++|++.++-|
T Consensus 27 ~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p 64 (196)
T 1pp9_E 27 ESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSA 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34789999999998876664444 467777776655
No 8
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=59.99 E-value=2.7 Score=25.14 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=11.9
Q ss_pred CchhHHHHHHHhhhccc
Q 032276 62 DMGKRQLMNLLLLGAVS 78 (144)
Q Consensus 62 Dm~RRqlMNlLl~Gava 78 (144)
+|+||+||..-..++++
T Consensus 2 ~lsRR~FLK~~aaa~Aa 18 (35)
T 2pq4_B 2 KLSRRSFMKANAVAAAA 18 (35)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 47899999965544443
No 9
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=59.28 E-value=1.9 Score=32.87 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhhhccccccceeccceEEEeecC
Q 032276 62 DMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP 95 (144)
Q Consensus 62 Dm~RRqlMNlLl~Gava~~a~g~LyP~v~fFvPP 95 (144)
+++|||||- ...+++++.+.+. .|...+..++
T Consensus 9 ~~~rr~fl~-~~~~a~~~~~~~~-~~~~~~~~~~ 40 (175)
T 4aay_B 9 DIGRRQFLR-GGALAAAGATAAV-FGVGAPQARA 40 (175)
T ss_dssp ----------------------------------
T ss_pred cccHHHHhh-hhHHhhhheeEec-cccccccccc
Confidence 899999999 3334433333332 4554444443
No 10
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=37.31 E-value=11 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=19.2
Q ss_pred CCcchhhhhhhhCCCCCchhhccCCCCce
Q 032276 111 GNDIIAADWLNTHGPGDRTLTEGLKDFSH 139 (144)
Q Consensus 111 GNdI~as~wL~th~~GdR~LvqGLKGDpT 139 (144)
|+...+++|+..||-|...|.+---.|.|
T Consensus 32 g~VYDvT~f~~~HPGG~~~l~~~aG~DaT 60 (92)
T 3ner_A 32 GRVYDVTRFLNEHPGGEEVLLEQAGVDAS 60 (92)
T ss_dssp TEEEECGGGTTTCTTCSHHHHTTTTSBCH
T ss_pred CEEEEcccccccCCCHHHHHHHhcCCcch
Confidence 56666778888888887666554434554
No 11
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=34.08 E-value=10 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=19.5
Q ss_pred cCCcchhhhhhhhCCCCCchhhccCCCCce
Q 032276 110 IGNDIIAADWLNTHGPGDRTLTEGLKDFSH 139 (144)
Q Consensus 110 lGNdI~as~wL~th~~GdR~LvqGLKGDpT 139 (144)
.|+.-.+++|+..||-|...|.+---.|.|
T Consensus 28 ~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT 57 (88)
T 2ibj_A 28 HNNVYDVTAFLNEHPGGEEVLIEQAGKDAT 57 (88)
T ss_dssp TTEEEECGGGTTTCTTCSHHHHTTTTEECH
T ss_pred CCEEEECCcchhhCcCHHHHHHHhCCCcch
Confidence 356667788888888887666543333444
No 12
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=32.82 E-value=16 Score=24.71 Aligned_cols=29 Identities=10% Similarity=-0.050 Sum_probs=18.8
Q ss_pred CCcchhhhhhhhCCCCCchhhccCCCCce
Q 032276 111 GNDIIAADWLNTHGPGDRTLTEGLKDFSH 139 (144)
Q Consensus 111 GNdI~as~wL~th~~GdR~LvqGLKGDpT 139 (144)
|+.-.+++|+..||-|...|.+---.|.|
T Consensus 30 g~VYDvT~f~~~HPGG~~~i~~~aG~DaT 58 (90)
T 1cxy_A 30 GKVYDLTPYVPNHPGPAGMMLVWCGQEST 58 (90)
T ss_dssp TEEEECTTTGGGCCSSTTTTGGGTTSBCH
T ss_pred CEEEECccchhhCcChHHHHHHHCCcchh
Confidence 55566778888888887666554434544
No 13
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=32.66 E-value=11 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=19.6
Q ss_pred CCcchhhhhhhhCCCCCchhhccCCCCce
Q 032276 111 GNDIIAADWLNTHGPGDRTLTEGLKDFSH 139 (144)
Q Consensus 111 GNdI~as~wL~th~~GdR~LvqGLKGDpT 139 (144)
|+...+++|+..||-|...|.+---.|.|
T Consensus 27 g~VYDvT~f~~~HPGG~~~i~~~aG~DaT 55 (93)
T 1cyo_A 27 YKVYDLTKFLEEHPGGEEVLREQAGGDAT 55 (93)
T ss_dssp TEEEECTTTTTTCTTCSHHHHHHTTSBCH
T ss_pred CEEEECCCcchhCcChHHHHHHhcCccch
Confidence 55667788888888887776544334554
No 14
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} PDB: 2x98_A
Probab=30.80 E-value=10 Score=33.59 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCCchhHHHHHHHhhhcccc
Q 032276 58 DRVPDMGKRQLMNLLLLGAVSL 79 (144)
Q Consensus 58 ~~vPDm~RRqlMNlLl~Gava~ 79 (144)
-+.|+|.||.||--..++++..
T Consensus 7 ~~~~~~~rr~~~~~~~~~~~~~ 28 (473)
T 2w0y_A 7 TESPSVDRRTFLAGLSGAVAGG 28 (473)
T ss_dssp ----------------------
T ss_pred CCCCCchHHHHhcccchhhhcc
Confidence 3679999999998776544433
No 15
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=29.85 E-value=21 Score=23.64 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=19.0
Q ss_pred CCcchhhhhhhhCCCCCchhhccCCCCce
Q 032276 111 GNDIIAADWLNTHGPGDRTLTEGLKDFSH 139 (144)
Q Consensus 111 GNdI~as~wL~th~~GdR~LvqGLKGDpT 139 (144)
|+.-.+++|+..||-| ..|.+---.|.|
T Consensus 26 g~VYDvT~f~~~HPGG-~~i~~~aG~D~T 53 (82)
T 1x3x_A 26 GEVHDMTSFYKEHPGG-KVILNKAGQDAT 53 (82)
T ss_dssp TEEEECGGGGGGCTTG-GGGGGGTTSBCH
T ss_pred CEEEECCcchhhCcCh-hhhhhhCCCCCc
Confidence 5566778899989888 666554434554
No 16
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=28.55 E-value=12 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=20.1
Q ss_pred CCcchhhhhhhhCCCCCchhhccCCCCce
Q 032276 111 GNDIIAADWLNTHGPGDRTLTEGLKDFSH 139 (144)
Q Consensus 111 GNdI~as~wL~th~~GdR~LvqGLKGDpT 139 (144)
|+...+++|+..||-|...|.+---.|.|
T Consensus 31 g~VYDvT~f~~~HPGG~~~i~~~aGkDaT 59 (104)
T 1hko_A 31 YKVYDLTKFLEEHPGGEEVLREQAGGDAT 59 (104)
T ss_dssp TEEEEHHHHSSSSSSCSHHHHTTCSEECH
T ss_pred CEEEECCcchhhCcChHHHHHHhcCccch
Confidence 66667888998888887776554333544
No 17
>3tc2_A Kunitz-type proteinase inhibitor P1H5; beta-trefoil fold, protease inhibitor, hydrolase inhibitor; 1.60A {Solanum tuberosum}
Probab=28.51 E-value=28 Score=26.80 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=12.3
Q ss_pred EEEeecCCCCCCCCccc-cc
Q 032276 89 ATFFAPPGLGSAGGGTT-AK 107 (144)
Q Consensus 89 v~fFvPP~sgG~gGGv~-AK 107 (144)
-+|++|...|.||||+. |+
T Consensus 21 ~YyI~p~~~g~gGGgl~l~~ 40 (187)
T 3tc2_A 21 SYRIISTFWGALGGDVYLGK 40 (187)
T ss_dssp CEEEECSCCGGGCCCEEEEC
T ss_pred CEEEEEcccCCCCCeEEEee
Confidence 35777877776667773 44
No 18
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=27.88 E-value=13 Score=29.09 Aligned_cols=15 Identities=33% Similarity=0.745 Sum_probs=0.0
Q ss_pred cCCCCCCCCcccccc
Q 032276 94 PPGLGSAGGGTTAKD 108 (144)
Q Consensus 94 PP~sgG~gGGv~AKD 108 (144)
||++.||||||.+.-
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (203)
T 1p5s_A 2 SPGISGGGGGILMDV 16 (203)
T ss_dssp ---------------
T ss_pred CCCcCCCCCceeeec
Confidence 788889999998754
No 19
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=24.38 E-value=20 Score=23.82 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=15.5
Q ss_pred CCcchhhhhhhhCCCCCchhhc
Q 032276 111 GNDIIAADWLNTHGPGDRTLTE 132 (144)
Q Consensus 111 GNdI~as~wL~th~~GdR~Lvq 132 (144)
|+.-.+++|+..||-|...|.+
T Consensus 28 g~VYDvt~f~~~HPGG~~~il~ 49 (82)
T 1mj4_A 28 SEVFDVTEFVDLHPGGPSKLML 49 (82)
T ss_dssp TEEEECTTTGGGSTTCHHHHHT
T ss_pred CEEEEchHHHHhCCCHhHHHHH
Confidence 5566677888888888555644
No 20
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=24.13 E-value=14 Score=25.09 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=19.0
Q ss_pred cCCcchhhhhhhhCCCCCchhhccCCCCce
Q 032276 110 IGNDIIAADWLNTHGPGDRTLTEGLKDFSH 139 (144)
Q Consensus 110 lGNdI~as~wL~th~~GdR~LvqGLKGDpT 139 (144)
.|+.-.+++|+..||-|...|.+---.|.|
T Consensus 27 ~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT 56 (88)
T 3lf5_A 27 RGFVYNVSPYMEYHPGGEDELMRAAGSDGT 56 (88)
T ss_dssp TTEEEECGGGTTTCTTCHHHHHTTTTEECH
T ss_pred CCEEEECccchhhCcChhhhhhhcCCCcch
Confidence 356667788888888777655543333443
No 21
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=23.80 E-value=20 Score=25.79 Aligned_cols=15 Identities=20% Similarity=-0.022 Sum_probs=8.3
Q ss_pred CCCCchhHHHHHHHh
Q 032276 59 RVPDMGKRQLMNLLL 73 (144)
Q Consensus 59 ~vPDm~RRqlMNlLl 73 (144)
+.+.+.+.++-.--.
T Consensus 22 ~~~~~t~~Ev~~h~~ 36 (112)
T 2keo_A 22 KVTLVRIADLENHNN 36 (112)
T ss_dssp CCCEECHHHHHHHHH
T ss_pred CCCccCHHHHHHhcC
Confidence 345566666655443
Done!