BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032278
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F3N|A Chain A, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F3N|B Chain B, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F3N|C Chain C, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F44|A Chain A, Crystal Structure Of The Zinc-Bound Shank Sam Domain
pdb|2F44|B Chain B, Crystal Structure Of The Zinc-Bound Shank Sam Domain
pdb|2F44|C Chain C, Crystal Structure Of The Zinc-Bound Shank Sam Domain
Length = 76
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMS 69
L L S DVG WLE I+LG +R F+++ + G +L ++
Sbjct: 2 LQLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALT 40
>pdb|3H8M|A Chain A, Sam Domain Of Human Ephrin Type-A Receptor 7 (Epha7)
pdb|3H8M|B Chain B, Sam Domain Of Human Ephrin Type-A Receptor 7 (Epha7)
Length = 90
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 21 NIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQIL 77
N++F P T S VG WL+ I + Y+ F G N LE ++ T E ++
Sbjct: 13 NLYFQGTPDFTTFCS---VGEWLQAIKMERYKDNFTAAGYNS--LESVARMTIEDVM 64
>pdb|1B4F|A Chain A, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|B Chain B, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|C Chain C, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|D Chain D, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|E Chain E, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|F Chain F, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|G Chain G, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|H Chain H, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1F0M|A Chain A, Monomeric Structure Of The Human Ephb2 Sam (Sterile
Alpha Motif) Domain
Length = 82
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
SF V WLE I +G Y++ F G + +S E ILR
Sbjct: 10 SFNTVDEWLEAIKMGQYKESFANAGFTS--FDVVSQMMMEDILR 51
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 14 GRKQKSVNIWFNDMPHALTLLSFQDVGLWLEEINLGGYRQIF-KENGVNGEYLEGMSMFT 72
RK N W ++ +AL +++G + +E++ + ++ KE E+ ++F
Sbjct: 33 SRKYLQRNHW--NINYALNDYYDKEIGTFTDEVSTVAHPPVYPKELTQVFEHYINNNLFD 90
Query: 73 TEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVK 127
+ +++FI D TLC +A L G +K+ P LS F +
Sbjct: 91 IDSLVKFIEELGYNLEDLATLC-------LAHLLGYKKLEEPLKREDFLSTWFXQ 138
>pdb|3C9F|A Chain A, Crystal Structure Of 5'-Nucleotidase From Candida Albicans
Sc5314
pdb|3C9F|B Chain B, Crystal Structure Of 5'-Nucleotidase From Candida Albicans
Sc5314
Length = 557
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 84 HMKWGDFITLCKELRRI 100
H WGDFI+ +RRI
Sbjct: 38 HANWGDFISFTTHMRRI 54
>pdb|2QKQ|A Chain A, Structure Of The Sam Domain Of Human Ephrin Type-b
Receptor 4
pdb|2QKQ|B Chain B, Structure Of The Sam Domain Of Human Ephrin Type-b
Receptor 4
Length = 83
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
+F VG WL I +G Y + F G E +S + E +LR
Sbjct: 14 AFGSVGEWLRAIKMGRYEESFAAAGFGS--FELVSQISAEDLLR 55
>pdb|1SGG|A Chain A, The Solution Structure Of Sam Domain From The Receptor
Tyrosine Kinase Ephb2, Nmr, 10 Structures
Length = 75
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 78
SF V WL+ I + Y++ F G + +S T E ILR
Sbjct: 9 SFNTVDEWLDAIKMSQYKESFASAGFTT--FDIVSQMTVEDILR 50
>pdb|3TAD|C Chain C, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
pdb|3TAD|D Chain D, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
Length = 265
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 34 LSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSM 70
L F V WL++I L Y+ F E V+G L M++
Sbjct: 90 LDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTV 126
>pdb|2KIV|A Chain A, Aida-1 Sam Domain Tandem
Length = 148
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRF 79
S Q VG WLE I L Y NG + G ++ + +L
Sbjct: 13 SVQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEI 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,987,560
Number of Sequences: 62578
Number of extensions: 151513
Number of successful extensions: 382
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 14
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)