Query 032278
Match_columns 144
No_of_seqs 34 out of 36
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 11:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00536 SAM_1: SAM domain (St 99.6 4.5E-15 9.7E-20 95.4 6.3 64 32-101 1-64 (64)
2 PF07647 SAM_2: SAM domain (St 99.5 1.7E-14 3.7E-19 92.9 5.5 65 31-101 1-66 (66)
3 smart00454 SAM Sterile alpha m 99.5 5.5E-14 1.2E-18 87.7 5.6 66 31-101 1-66 (68)
4 cd00166 SAM Sterile alpha moti 99.5 5.3E-14 1.1E-18 87.5 4.7 63 33-101 1-63 (63)
5 KOG4375 Scaffold protein Shank 98.4 1.1E-07 2.3E-12 81.2 1.6 47 29-75 205-251 (272)
6 KOG3678 SARM protein (with ste 98.3 5.2E-07 1.1E-11 84.3 4.6 69 30-104 461-530 (832)
7 KOG1170 Diacylglycerol kinase 98.0 4.3E-06 9.3E-11 80.9 2.9 62 30-97 994-1058(1099)
8 PF02198 SAM_PNT: Sterile alph 97.4 0.00014 3E-09 50.6 3.1 68 27-104 13-84 (84)
9 KOG1899 LAR transmembrane tyro 97.0 0.00073 1.6E-08 64.6 4.6 41 31-71 620-660 (861)
10 KOG1899 LAR transmembrane tyro 97.0 0.00036 7.7E-09 66.6 2.3 52 26-77 542-593 (861)
11 KOG4403 Cell surface glycoprot 96.9 0.00068 1.5E-08 62.6 2.9 46 29-74 130-176 (575)
12 cd08757 SAM_PNT_ESE Sterile al 96.8 0.0013 2.8E-08 45.1 3.3 61 32-101 3-67 (68)
13 smart00251 SAM_PNT SAM / Point 96.6 0.003 6.4E-08 44.7 3.8 64 27-101 13-80 (82)
14 cd08532 SAM_PNT-PDEF-like Ster 96.5 0.0057 1.2E-07 43.3 4.9 67 25-103 4-74 (76)
15 PF09235 Ste50p-SAM: Ste50p, s 96.4 0.0021 4.6E-08 46.5 1.9 40 30-69 2-45 (75)
16 cd08203 SAM_PNT Sterile alpha 96.0 0.0058 1.2E-07 41.4 2.6 58 32-100 3-64 (66)
17 PF00400 WD40: WD domain, G-be 95.9 0.0045 9.7E-08 35.1 1.3 17 8-24 23-39 (39)
18 cd08534 SAM_PNT-GABP-alpha Ste 95.1 0.025 5.3E-07 41.3 3.1 58 26-91 14-75 (89)
19 KOG4384 Uncharacterized SAM do 94.9 0.033 7.2E-07 49.7 4.2 68 34-106 213-280 (361)
20 cd08540 SAM_PNT-ERG Sterile al 94.9 0.026 5.6E-07 39.9 2.8 56 29-91 3-62 (75)
21 cd08538 SAM_PNT-ESE-2-like Ste 94.3 0.085 1.8E-06 37.9 4.4 64 29-101 5-72 (78)
22 KOG0196 Tyrosine kinase, EPH ( 94.3 0.067 1.5E-06 52.7 4.9 65 37-106 924-988 (996)
23 cd08533 SAM_PNT-ETS-1,2 Steril 94.2 0.04 8.6E-07 38.7 2.4 55 29-91 2-60 (71)
24 cd08542 SAM_PNT-ETS-1 Sterile 93.9 0.1 2.2E-06 38.3 4.2 70 25-104 13-86 (88)
25 KOG0285 Pleiotropic regulator 93.7 0.028 6.1E-07 51.3 1.2 19 9-27 164-182 (460)
26 cd08536 SAM_PNT-Mae Sterile al 93.6 0.069 1.5E-06 36.8 2.7 57 32-99 3-63 (66)
27 cd08541 SAM_PNT-FLI-1 Sterile 93.2 0.058 1.3E-06 39.7 1.9 58 26-91 12-74 (91)
28 KOG0319 WD40-repeat-containing 93.2 0.033 7.2E-07 53.6 0.8 19 9-27 476-494 (775)
29 cd08543 SAM_PNT-ETS-2 Sterile 93.1 0.09 1.9E-06 38.6 2.8 58 26-91 14-75 (89)
30 cd08535 SAM_PNT-Tel_Yan Steril 92.7 0.079 1.7E-06 36.8 1.9 52 31-91 3-58 (68)
31 KOG1738 Membrane-associated gu 92.5 0.14 3.1E-06 48.6 3.9 58 30-93 3-62 (638)
32 smart00320 WD40 WD40 repeats. 92.2 0.074 1.6E-06 26.0 0.9 16 9-24 25-40 (40)
33 KOG4374 RNA-binding protein Bi 91.8 0.092 2E-06 44.1 1.6 36 36-71 151-186 (216)
34 cd08531 SAM_PNT-ERG_FLI-1 Ster 91.7 0.11 2.4E-06 36.7 1.6 55 29-91 3-62 (75)
35 KOG0288 WD40 repeat protein Ti 91.0 0.094 2E-06 48.1 1.0 28 9-36 400-441 (459)
36 KOG0264 Nucleosome remodeling 90.3 0.11 2.5E-06 47.2 0.9 17 9-25 286-302 (422)
37 PF10281 Ish1: Putative stress 89.2 0.37 7.9E-06 29.4 2.2 19 31-49 1-19 (38)
38 KOG0293 WD40 repeat-containing 89.1 0.15 3.2E-06 47.4 0.6 50 9-58 237-310 (519)
39 KOG0249 LAR-interacting protei 88.2 0.2 4.4E-06 49.0 0.9 54 29-82 667-721 (916)
40 KOG0319 WD40-repeat-containing 87.3 0.31 6.8E-06 47.2 1.6 19 9-27 378-396 (775)
41 KOG0269 WD40 repeat-containing 87.0 0.22 4.8E-06 48.5 0.5 18 9-26 233-250 (839)
42 KOG0650 WD40 repeat nucleolar 86.3 0.3 6.5E-06 46.9 0.9 28 9-36 413-451 (733)
43 KOG0271 Notchless-like WD40 re 84.5 0.36 7.8E-06 44.5 0.5 33 10-44 129-173 (480)
44 KOG0283 WD40 repeat-containing 84.4 0.4 8.7E-06 46.1 0.8 16 10-25 382-397 (712)
45 KOG1332 Vesicle coat complex C 84.4 0.5 1.1E-05 41.5 1.3 20 9-28 176-195 (299)
46 PF12979 DUF3863: Domain of Un 83.9 0.23 4.9E-06 44.1 -1.0 68 26-94 22-96 (351)
47 KOG0315 G-protein beta subunit 83.8 0.56 1.2E-05 41.4 1.4 23 5-27 224-246 (311)
48 KOG0263 Transcription initiati 83.6 0.54 1.2E-05 45.2 1.3 17 9-25 548-564 (707)
49 KOG0272 U4/U6 small nuclear ri 81.6 0.76 1.6E-05 42.4 1.4 20 10-29 359-378 (459)
50 KOG1063 RNA polymerase II elon 80.5 0.78 1.7E-05 44.5 1.1 28 9-36 207-234 (764)
51 KOG1445 Tumor-specific antigen 79.9 0.93 2E-05 44.6 1.4 18 9-26 93-110 (1012)
52 KOG0271 Notchless-like WD40 re 78.4 0.93 2E-05 42.0 0.9 19 9-27 422-440 (480)
53 KOG0276 Vesicle coat complex C 78.1 1.2 2.6E-05 43.3 1.5 20 10-29 155-174 (794)
54 cd08539 SAM_PNT-ESE-3-like Ste 77.9 1.6 3.6E-05 31.3 1.9 63 30-101 4-70 (74)
55 KOG0291 WD40-repeat-containing 77.0 1.1 2.5E-05 44.0 1.1 17 9-25 491-507 (893)
56 KOG0647 mRNA export protein (c 76.4 1.2 2.5E-05 40.0 0.9 19 9-27 128-146 (347)
57 KOG0266 WD40 repeat-containing 75.0 1.5 3.3E-05 37.9 1.2 16 10-25 217-232 (456)
58 KOG0268 Sof1-like rRNA process 74.7 1.7 3.6E-05 39.9 1.5 23 7-29 78-100 (433)
59 KOG0641 WD40 repeat protein [G 74.4 1.7 3.6E-05 38.6 1.3 19 9-27 102-120 (350)
60 KOG1240 Protein kinase contain 74.1 1.6 3.4E-05 45.0 1.3 17 9-25 1062-1078(1431)
61 PTZ00421 coronin; Provisional 73.1 2 4.3E-05 38.5 1.5 19 9-27 89-107 (493)
62 KOG0278 Serine/threonine kinas 73.0 2.2 4.7E-05 38.0 1.7 28 10-37 281-308 (334)
63 KOG0315 G-protein beta subunit 72.4 1.7 3.7E-05 38.4 1.0 27 9-35 271-297 (311)
64 KOG1063 RNA polymerase II elon 72.3 2.1 4.5E-05 41.7 1.6 19 10-28 632-650 (764)
65 KOG0645 WD40 repeat protein [G 71.7 1.3 2.9E-05 39.2 0.1 19 9-27 28-46 (312)
66 KOG0266 WD40 repeat-containing 71.7 2 4.3E-05 37.2 1.2 19 9-27 259-277 (456)
67 KOG0249 LAR-interacting protei 71.4 2.5 5.5E-05 41.7 1.9 38 28-65 755-792 (916)
68 KOG3930 Uncharacterized conser 71.3 4.6 9.9E-05 36.7 3.4 51 50-109 20-70 (389)
69 KOG0306 WD40-repeat-containing 70.3 2 4.3E-05 42.4 0.9 17 9-25 563-579 (888)
70 KOG0274 Cdc4 and related F-box 70.0 2.2 4.7E-05 39.1 1.1 16 10-25 263-278 (537)
71 KOG0303 Actin-binding protein 69.0 3.3 7.1E-05 38.5 2.0 26 10-35 96-121 (472)
72 KOG0285 Pleiotropic regulator 68.0 3 6.4E-05 38.5 1.5 16 10-25 291-306 (460)
73 KOG0645 WD40 repeat protein [G 67.6 3.2 7E-05 36.8 1.6 18 9-26 118-135 (312)
74 KOG4328 WD40 protein [Function 67.4 2.6 5.7E-05 39.4 1.1 16 10-25 337-352 (498)
75 KOG1272 WD40-repeat-containing 66.6 2.6 5.6E-05 39.7 0.9 48 9-58 306-362 (545)
76 PTZ00420 coronin; Provisional 66.4 3.1 6.7E-05 38.5 1.4 19 9-27 88-106 (568)
77 TIGR00014 arsC arsenate reduct 66.4 15 0.00032 26.5 4.6 51 32-82 34-85 (114)
78 KOG1407 WD40 repeat protein [F 65.9 2.8 6E-05 37.2 0.9 16 10-25 79-94 (313)
79 KOG0300 WD40 repeat-containing 65.1 3.5 7.6E-05 38.0 1.4 16 10-25 370-385 (481)
80 KOG0302 Ribosome Assembly prot 64.8 3.2 6.9E-05 38.3 1.1 30 9-38 315-359 (440)
81 KOG0302 Ribosome Assembly prot 64.7 3.5 7.7E-05 38.0 1.4 19 9-27 271-289 (440)
82 KOG0279 G protein beta subunit 64.5 3.5 7.5E-05 36.7 1.2 19 9-27 163-181 (315)
83 KOG0296 Angio-associated migra 64.5 3.2 6.8E-05 37.9 1.0 19 9-27 119-137 (399)
84 KOG0273 Beta-transducin family 63.6 3.2 6.9E-05 39.0 0.9 19 9-27 465-483 (524)
85 PTZ00421 coronin; Provisional 63.4 3.9 8.4E-05 36.7 1.4 19 9-27 139-157 (493)
86 PLN00181 protein SPA1-RELATED; 62.9 5.2 0.00011 36.6 2.1 20 9-28 673-692 (793)
87 KOG0289 mRNA splicing factor [ 62.7 3.6 7.8E-05 38.5 1.0 29 9-37 402-430 (506)
88 KOG0270 WD40 repeat-containing 61.8 4.4 9.5E-05 37.6 1.4 18 10-27 258-275 (463)
89 KOG1539 WD repeat protein [Gen 61.2 3.3 7.2E-05 41.1 0.6 18 9-26 589-606 (910)
90 KOG0318 WD40 repeat stress pro 61.0 4.4 9.5E-05 38.7 1.3 21 9-29 543-563 (603)
91 KOG0284 Polyadenylation factor 61.0 3.7 8E-05 38.1 0.8 18 10-27 364-381 (464)
92 KOG0276 Vesicle coat complex C 60.6 3.9 8.5E-05 39.9 0.9 19 7-25 238-256 (794)
93 PF14046 NR_Repeat: Nuclear re 60.6 4.5 9.7E-05 27.1 0.9 16 107-122 27-42 (46)
94 KOG0299 U3 snoRNP-associated p 60.6 4.5 9.7E-05 37.7 1.3 19 10-28 394-412 (479)
95 KOG0277 Peroxisomal targeting 60.5 4.3 9.4E-05 36.0 1.1 18 10-27 205-222 (311)
96 KOG0270 WD40 repeat-containing 60.4 4.7 0.0001 37.5 1.4 18 9-26 387-404 (463)
97 KOG1945 Protein phosphatase 1 60.4 17 0.00038 33.1 4.9 40 29-68 262-301 (377)
98 KOG0272 U4/U6 small nuclear ri 59.6 4 8.6E-05 37.9 0.8 19 7-25 399-417 (459)
99 KOG0283 WD40 repeat-containing 59.6 4.8 0.0001 39.0 1.3 19 9-27 280-298 (712)
100 KOG0313 Microtubule binding pr 59.3 4.9 0.00011 37.0 1.3 27 10-36 360-399 (423)
101 PLN00181 protein SPA1-RELATED; 58.8 5.3 0.00011 36.6 1.4 19 9-27 589-607 (793)
102 KOG1036 Mitotic spindle checkp 58.1 4.9 0.00011 35.8 1.1 20 10-29 246-265 (323)
103 KOG0268 Sof1-like rRNA process 57.9 4.7 0.0001 37.2 0.9 18 10-27 286-303 (433)
104 cd00200 WD40 WD40 domain, foun 57.7 6.3 0.00014 27.2 1.3 19 9-27 64-82 (289)
105 TIGR01616 nitro_assoc nitrogen 57.2 43 0.00093 25.1 5.8 48 32-82 36-84 (126)
106 KOG0306 WD40-repeat-containing 57.1 5.8 0.00013 39.3 1.4 17 9-25 467-483 (888)
107 KOG2919 Guanine nucleotide-bin 57.1 5.2 0.00011 36.6 1.0 21 9-29 310-330 (406)
108 KOG0310 Conserved WD40 repeat- 56.3 5.6 0.00012 37.1 1.2 17 10-26 168-184 (487)
109 KOG0292 Vesicle coat complex C 55.8 5.8 0.00013 40.3 1.2 27 8-37 218-244 (1202)
110 COG1393 ArsC Arsenate reductas 54.8 26 0.00056 26.1 4.3 50 32-82 36-86 (117)
111 cd00200 WD40 WD40 domain, foun 53.8 8 0.00017 26.7 1.3 19 9-27 22-40 (289)
112 PF03960 ArsC: ArsC family; I 53.7 15 0.00032 25.9 2.7 50 32-82 31-82 (110)
113 KOG0318 WD40 repeat stress pro 53.0 5.8 0.00013 37.9 0.7 31 9-39 248-278 (603)
114 PTZ00420 coronin; Provisional 52.9 6.9 0.00015 36.2 1.2 20 8-27 138-157 (568)
115 KOG0647 mRNA export protein (c 52.6 6.3 0.00014 35.5 0.8 29 9-37 41-83 (347)
116 cd01713 PAPS_reductase This do 52.1 12 0.00025 26.1 2.0 20 30-49 141-160 (173)
117 KOG0974 WD-repeat protein WDR6 51.8 7.3 0.00016 39.0 1.2 19 9-27 188-206 (967)
118 KOG0274 Cdc4 and related F-box 51.6 8.3 0.00018 35.4 1.5 17 10-26 303-319 (537)
119 KOG1332 Vesicle coat complex C 51.3 9.6 0.00021 33.7 1.7 19 8-26 223-241 (299)
120 KOG0294 WD40 repeat-containing 50.4 8.4 0.00018 34.9 1.3 19 9-27 264-282 (362)
121 cd08537 SAM_PNT-ESE-1-like Ste 49.8 11 0.00023 27.6 1.5 43 29-71 8-54 (78)
122 KOG0313 Microtubule binding pr 49.6 9.3 0.0002 35.2 1.4 20 8-27 159-178 (423)
123 KOG2445 Nuclear pore complex c 49.5 9.1 0.0002 34.6 1.3 16 10-25 27-42 (361)
124 KOG0265 U5 snRNP-specific prot 48.7 8.6 0.00019 34.5 1.1 20 8-27 145-164 (338)
125 KOG0273 Beta-transducin family 48.1 10 0.00022 35.8 1.5 41 8-48 371-423 (524)
126 KOG4283 Transcription-coupled 47.5 9.7 0.00021 34.7 1.2 16 10-25 203-218 (397)
127 KOG0281 Beta-TrCP (transducin 46.6 10 0.00022 35.3 1.2 17 10-26 332-348 (499)
128 KOG0301 Phospholipase A2-activ 46.3 8.5 0.00018 37.6 0.7 20 10-29 153-172 (745)
129 PF03575 Peptidase_S51: Peptid 44.8 42 0.00091 24.8 4.1 54 48-102 2-58 (154)
130 cd03032 ArsC_Spx Arsenate Redu 44.7 42 0.00091 23.9 3.9 50 32-82 35-85 (115)
131 KOG1445 Tumor-specific antigen 44.5 8.9 0.00019 38.1 0.6 31 7-37 689-731 (1012)
132 KOG0316 Conserved WD40 repeat- 44.4 11 0.00024 33.4 1.0 20 6-25 111-130 (307)
133 KOG0267 Microtubule severing p 44.3 8.8 0.00019 37.9 0.5 19 9-27 83-101 (825)
134 PF08806 Sep15_SelM: Sep15/Sel 44.0 13 0.00029 26.1 1.2 21 28-48 57-77 (78)
135 cd03035 ArsC_Yffb Arsenate Red 43.8 44 0.00096 23.9 3.9 48 32-82 34-83 (105)
136 KOG0275 Conserved WD40 repeat- 43.8 12 0.00027 34.6 1.3 18 9-26 276-293 (508)
137 PF07308 DUF1456: Protein of u 43.6 11 0.00024 26.1 0.8 22 33-54 29-50 (68)
138 KOG0973 Histone transcription 43.1 12 0.00027 37.4 1.3 17 9-25 184-200 (942)
139 KOG0646 WD40 repeat protein [G 43.1 14 0.0003 34.6 1.5 17 9-25 136-152 (476)
140 cd03034 ArsC_ArsC Arsenate Red 42.8 64 0.0014 23.1 4.6 50 32-82 34-84 (112)
141 PF01507 PAPS_reduct: Phosphoa 42.7 18 0.0004 25.8 1.8 20 30-49 135-154 (174)
142 KOG2445 Nuclear pore complex c 42.6 16 0.00035 33.1 1.8 28 10-37 128-155 (361)
143 KOG1034 Transcriptional repres 42.2 13 0.00028 33.9 1.2 19 9-27 194-212 (385)
144 KOG0641 WD40 repeat protein [G 41.6 14 0.00029 33.0 1.2 18 10-27 196-213 (350)
145 cd04724 Tryptophan_synthase_al 41.0 11 0.00024 30.4 0.6 58 45-102 90-147 (242)
146 KOG0263 Transcription initiati 40.8 15 0.00032 35.8 1.4 19 9-27 590-608 (707)
147 PHA03074 late transcription fa 40.8 43 0.00094 28.8 4.0 56 34-97 86-145 (225)
148 KOG0289 mRNA splicing factor [ 40.8 16 0.00035 34.4 1.6 21 10-30 361-381 (506)
149 PF13727 CoA_binding_3: CoA-bi 40.2 34 0.00074 24.1 2.8 36 48-84 130-165 (175)
150 KOG2096 WD40 repeat protein [G 40.1 16 0.00034 33.6 1.4 19 9-27 99-117 (420)
151 KOG0296 Angio-associated migra 40.0 16 0.00034 33.6 1.4 21 7-27 297-317 (399)
152 PRK14466 ribosomal RNA large s 39.7 65 0.0014 28.4 5.1 52 28-99 4-56 (345)
153 PF03801 Ndc80_HEC: HEC/Ndc80p 39.0 48 0.001 25.7 3.7 56 35-97 41-104 (157)
154 TIGR00262 trpA tryptophan synt 38.3 14 0.0003 30.5 0.7 57 45-101 101-157 (256)
155 PF11715 Nup160: Nucleoporin N 38.3 18 0.00039 31.6 1.4 49 7-55 229-285 (547)
156 cd08316 Death_FAS_TNFRSF6 Deat 38.2 59 0.0013 23.8 3.9 60 44-103 16-82 (97)
157 TIGR03147 cyt_nit_nrfF cytochr 38.2 16 0.00036 28.3 1.0 22 69-93 72-93 (126)
158 PF10453 NUFIP1: Nuclear fragi 37.6 23 0.00051 23.9 1.6 14 32-45 16-29 (56)
159 KOG1945 Protein phosphatase 1 37.6 9.9 0.00021 34.6 -0.3 40 29-69 144-183 (377)
160 PRK10026 arsenate reductase; P 37.4 1.5E+02 0.0032 23.0 6.2 50 32-82 37-87 (141)
161 KOG0279 G protein beta subunit 37.4 16 0.00035 32.6 1.0 16 10-25 119-134 (315)
162 PRK10144 formate-dependent nit 37.3 17 0.00038 28.2 1.1 22 69-93 72-93 (126)
163 PF12728 HTH_17: Helix-turn-he 36.8 53 0.0011 19.9 3.0 14 69-82 36-49 (51)
164 PRK12559 transcriptional regul 36.7 69 0.0015 23.9 4.2 50 32-82 35-85 (131)
165 KOG0281 Beta-TrCP (transducin 36.7 20 0.00043 33.5 1.5 17 10-26 249-265 (499)
166 KOG0280 Uncharacterized conser 36.4 16 0.00035 32.9 0.8 18 9-26 224-241 (339)
167 PRK14470 ribosomal RNA large s 36.0 47 0.001 28.7 3.6 47 33-99 3-49 (336)
168 KOG0640 mRNA cleavage stimulat 35.4 18 0.0004 33.2 1.1 16 10-25 275-290 (430)
169 KOG0295 WD40 repeat-containing 35.2 17 0.00037 33.4 0.8 52 8-70 247-312 (406)
170 KOG0269 WD40 repeat-containing 35.2 21 0.00046 35.5 1.5 18 10-27 148-165 (839)
171 PF13907 DUF4208: Domain of un 34.8 42 0.00092 24.1 2.7 26 70-95 38-63 (100)
172 PF08845 SymE_toxin: Toxin Sym 34.8 18 0.0004 24.3 0.7 10 40-49 30-39 (57)
173 PRK07116 flavodoxin; Provision 34.7 28 0.0006 25.9 1.8 14 35-48 147-160 (160)
174 KOG0265 U5 snRNP-specific prot 34.7 20 0.00044 32.3 1.2 18 8-25 59-76 (338)
175 KOG0277 Peroxisomal targeting 34.0 20 0.00043 32.0 1.0 19 8-26 247-265 (311)
176 KOG1446 Histone H3 (Lys4) meth 33.6 22 0.00049 31.6 1.3 22 10-31 246-267 (311)
177 KOG1034 Transcriptional repres 32.7 25 0.00053 32.2 1.4 18 8-25 148-165 (385)
178 TIGR01617 arsC_related transcr 32.7 60 0.0013 23.1 3.2 50 32-82 34-86 (117)
179 KOG1517 Guanine nucleotide bin 32.6 24 0.00052 36.7 1.5 28 9-36 1124-1156(1387)
180 KOG0301 Phospholipase A2-activ 32.6 19 0.00041 35.4 0.7 17 11-27 115-131 (745)
181 KOG4190 Uncharacterized conser 32.1 27 0.00059 34.5 1.7 18 10-27 749-766 (1034)
182 PF13877 RPAP3_C: Potential Mo 31.7 42 0.0009 23.0 2.1 33 35-68 20-52 (94)
183 KOG3914 WD repeat protein WDR4 31.6 24 0.00053 32.2 1.2 15 11-25 208-222 (390)
184 cd01992 PP-ATPase N-terminal d 31.5 25 0.00054 25.8 1.0 20 30-49 143-162 (185)
185 PF12894 Apc4_WD40: Anaphase-p 30.7 32 0.0007 22.0 1.4 20 9-28 24-43 (47)
186 KOG1273 WD40 repeat protein [G 30.4 23 0.00049 32.5 0.8 29 9-37 36-76 (405)
187 KOG0300 WD40 repeat-containing 30.3 17 0.00037 33.7 -0.0 17 9-25 203-219 (481)
188 PF03793 PASTA: PASTA domain; 29.9 48 0.001 20.7 2.1 19 30-48 5-23 (63)
189 KOG1407 WD40 repeat protein [F 29.9 28 0.00061 31.1 1.3 19 9-27 33-51 (313)
190 KOG0294 WD40 repeat-containing 29.8 27 0.00058 31.8 1.1 17 9-25 54-70 (362)
191 KOG0267 Microtubule severing p 29.8 26 0.00056 34.8 1.1 18 9-26 209-226 (825)
192 KOG1446 Histone H3 (Lys4) meth 29.7 28 0.0006 31.0 1.2 16 11-26 115-130 (311)
193 KOG0264 Nucleosome remodeling 29.3 27 0.00058 32.2 1.1 18 8-25 329-346 (422)
194 TIGR00048 radical SAM enzyme, 29.2 88 0.0019 27.1 4.1 52 28-99 6-58 (355)
195 TIGR03700 mena_SCO4494 putativ 29.1 1.1E+02 0.0024 25.9 4.6 68 34-103 147-232 (351)
196 TIGR01764 excise DNA binding d 28.8 96 0.0021 17.6 3.1 45 35-80 3-47 (49)
197 KOG2394 WD40 protein DMR-N9 [G 28.1 26 0.00057 33.8 0.8 20 10-29 346-365 (636)
198 KOG0772 Uncharacterized conser 28.0 33 0.00072 33.2 1.5 18 10-27 283-300 (641)
199 PF03918 CcmH: Cytochrome C bi 28.0 34 0.00073 26.7 1.3 21 70-93 73-93 (148)
200 COG5347 GTPase-activating prot 28.0 1.1E+02 0.0024 26.9 4.6 55 28-83 62-116 (319)
201 KOG0291 WD40-repeat-containing 27.4 29 0.00064 34.7 1.1 17 10-26 364-380 (893)
202 KOG0643 Translation initiation 27.3 31 0.00068 30.9 1.1 19 9-27 65-83 (327)
203 PRK14456 ribosomal RNA large s 27.3 1E+02 0.0023 27.0 4.3 52 28-99 17-69 (368)
204 PF05930 Phage_AlpA: Prophage 27.2 21 0.00045 22.5 0.0 13 31-43 39-51 (51)
205 KOG0310 Conserved WD40 repeat- 26.9 32 0.00069 32.4 1.1 23 6-28 121-143 (487)
206 PF12447 DUF3683: Protein of u 26.8 65 0.0014 25.1 2.7 30 67-102 10-40 (115)
207 COG4396 Mu-like prophage host- 26.4 1E+02 0.0022 25.4 3.8 53 13-68 83-141 (170)
208 TIGR03866 PQQ_ABC_repeats PQQ- 26.4 41 0.00088 24.7 1.4 17 10-26 3-19 (300)
209 KOG3321 Mitochondrial ribosoma 26.1 43 0.00094 27.8 1.6 22 64-85 118-139 (175)
210 KOG0295 WD40 repeat-containing 26.0 40 0.00087 31.1 1.6 21 9-29 347-367 (406)
211 KOG0640 mRNA cleavage stimulat 25.9 35 0.00075 31.5 1.2 18 9-26 185-202 (430)
212 PRK01655 spxA transcriptional 25.9 1.1E+02 0.0024 22.6 3.7 50 32-82 35-85 (131)
213 PRK15451 tRNA cmo(5)U34 methyl 25.8 61 0.0013 25.7 2.4 30 33-62 208-237 (247)
214 KOG0303 Actin-binding protein 25.7 32 0.0007 32.2 1.0 17 9-25 186-202 (472)
215 TIGR03699 mena_SCO4550 menaqui 25.7 1.9E+02 0.0041 24.0 5.3 64 36-103 142-225 (340)
216 PRK13582 thrH phosphoserine ph 25.2 2.1E+02 0.0046 21.0 5.0 14 37-50 15-28 (205)
217 KOG1195 Arginyl-tRNA synthetas 25.1 14 0.00031 35.2 -1.5 61 14-74 217-292 (567)
218 smart00027 EH Eps15 homology d 25.0 68 0.0015 21.8 2.3 23 84-106 60-82 (96)
219 KOG0288 WD40 repeat protein Ti 25.0 18 0.00039 33.7 -0.8 17 11-27 276-292 (459)
220 PF07352 Phage_Mu_Gam: Bacteri 25.0 47 0.001 25.1 1.6 43 23-68 81-123 (149)
221 TIGR00740 methyltransferase, p 25.0 70 0.0015 24.8 2.6 28 33-60 205-232 (239)
222 PF15013 CCSMST1: CCSMST1 fami 24.9 30 0.00065 25.0 0.5 26 99-124 14-39 (77)
223 KOG0649 WD40 repeat protein [G 24.6 39 0.00085 30.2 1.2 16 10-25 170-185 (325)
224 PF00165 HTH_AraC: Bacterial r 24.5 67 0.0014 18.9 1.9 27 31-58 6-32 (42)
225 PRK00304 hypothetical protein; 24.5 83 0.0018 22.8 2.7 45 67-111 7-52 (75)
226 KOG0284 Polyadenylation factor 24.4 35 0.00076 31.9 0.9 19 9-27 151-169 (464)
227 PRK14469 ribosomal RNA large s 24.3 1.3E+02 0.0028 25.7 4.2 48 31-98 4-52 (343)
228 PF15410 PH_9: Pleckstrin homo 24.0 39 0.00084 24.5 0.9 33 16-48 80-116 (119)
229 cd03033 ArsC_15kD Arsenate Red 23.9 1.5E+02 0.0033 21.6 4.0 45 32-82 35-83 (113)
230 KOG0643 Translation initiation 23.8 39 0.00085 30.3 1.1 19 7-25 201-219 (327)
231 KOG0282 mRNA splicing factor [ 23.8 38 0.00082 32.0 1.0 23 3-25 221-244 (503)
232 KOG0772 Uncharacterized conser 23.8 41 0.0009 32.5 1.3 18 8-25 329-346 (641)
233 KOG0292 Vesicle coat complex C 23.4 42 0.00091 34.5 1.3 16 10-25 149-164 (1202)
234 PRK14465 ribosomal RNA large s 23.3 1.4E+02 0.003 26.2 4.3 52 28-99 4-56 (342)
235 PRK02090 phosphoadenosine phos 23.2 58 0.0013 26.1 1.9 20 30-49 174-193 (241)
236 smart00740 PASTA PASTA domain. 23.0 89 0.0019 18.4 2.3 20 30-49 9-28 (66)
237 PRK06934 flavodoxin; Provision 23.0 53 0.0012 27.2 1.6 15 35-49 206-220 (221)
238 KOG0771 Prolactin regulatory e 22.9 46 0.001 30.5 1.4 17 9-25 157-173 (398)
239 PF12512 DUF3717: Protein of u 22.9 73 0.0016 22.8 2.1 28 73-100 9-36 (71)
240 PF15492 Nbas_N: Neuroblastoma 22.7 55 0.0012 28.8 1.7 30 9-38 242-271 (282)
241 PF05046 Img2: Mitochondrial l 22.5 61 0.0013 23.0 1.7 25 24-48 63-87 (87)
242 TIGR00984 3a0801s03tim44 mitoc 22.4 89 0.0019 28.3 3.0 87 49-135 173-293 (378)
243 PF10044 Ret_tiss: Retinal tis 22.4 35 0.00075 25.5 0.4 33 50-84 39-71 (95)
244 KOG1188 WD40 repeat protein [G 22.2 49 0.0011 30.3 1.4 20 7-26 83-102 (376)
245 KOG1009 Chromatin assembly com 22.1 41 0.00089 31.3 0.9 16 10-25 28-43 (434)
246 KOG0293 WD40 repeat-containing 21.6 43 0.00093 31.7 0.9 30 9-38 453-494 (519)
247 cd02977 ArsC_family Arsenate R 21.5 2.4E+02 0.0052 19.4 4.5 50 32-82 34-85 (105)
248 PF07962 Swi3: Replication For 21.5 1E+02 0.0022 21.7 2.7 50 43-97 8-65 (83)
249 PF03765 CRAL_TRIO_N: CRAL/TRI 21.0 2.2E+02 0.0048 17.6 3.9 14 69-82 27-40 (55)
250 PF08700 Vps51: Vps51/Vps67; 20.8 1.7E+02 0.0037 19.4 3.5 22 84-105 47-68 (87)
251 KOG2180 Late Golgi protein sor 20.8 1.4E+02 0.003 29.9 4.1 25 35-59 229-253 (793)
252 KOG0646 WD40 repeat protein [G 20.8 49 0.0011 31.1 1.1 19 9-27 290-308 (476)
253 cd08315 Death_TRAILR_DR4_DR5 D 20.7 1.4E+02 0.0031 21.4 3.3 58 44-103 15-80 (96)
254 KOG1422 Intracellular Cl- chan 20.6 50 0.0011 28.2 1.1 34 87-125 149-187 (221)
255 KOG0299 U3 snoRNP-associated p 20.4 58 0.0013 30.7 1.5 21 9-29 215-235 (479)
256 TIGR02055 APS_reductase thiore 20.3 79 0.0017 24.6 2.0 21 30-50 128-148 (191)
257 PF12060 DUF3541: Domain of un 20.3 66 0.0014 27.7 1.7 35 41-75 163-197 (227)
258 TIGR00434 cysH phosophoadenyly 20.3 77 0.0017 24.5 1.9 20 30-49 149-168 (212)
259 PF05452 Clavanin: Clavanin; 20.2 81 0.0018 23.2 1.9 33 59-92 14-46 (80)
260 TIGR01557 myb_SHAQKYF myb-like 20.0 2.8E+02 0.006 18.4 4.4 43 32-82 4-52 (57)
No 1
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.58 E-value=4.5e-15 Score=95.38 Aligned_cols=64 Identities=27% Similarity=0.463 Sum_probs=56.1
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 101 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k 101 (144)
++|++++|++||+++||++|.+.|++|.|+|+.|.+|| ++-|.-++. .+.||+.++...|+++|
T Consensus 1 s~W~~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt----~~dL~~lgi--~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 1 SEWSVEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLT----EEDLEELGI--TKLGHRKKILRAIQKLK 64 (64)
T ss_dssp GGTSHHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSC----HHHHHHTT---SSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcC----HHHHHHcCC--CCHHHHHHHHHHHHHhC
Confidence 47999999999999999999999999999999999994 343544665 77899999999999987
No 2
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.53 E-value=1.7e-14 Score=92.91 Aligned_cols=65 Identities=31% Similarity=0.500 Sum_probs=56.9
Q ss_pred ccCCChhHHHHHHHhcCcchHHHHhhHcCcCh-hhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278 31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 101 (144)
Q Consensus 31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG-~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k 101 (144)
+..||.+||+.||+.+||++|.+.|++|+|+| +.|..| +++-|.-|+. .+.||+.+++++++.+|
T Consensus 1 v~~w~~~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l----~~~~L~~lGI--~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 1 VSTWSPEDVAEWLKSLGLEQYADNFRENGIDGLEDLLQL----TEEDLKELGI--TNLGHRRKLLSAIQELK 66 (66)
T ss_dssp GGGHCHHHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTS----CHHHHHHTTT--THHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhC----CHHHHHHcCC--CCHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999 999888 4444555554 78999999999999887
No 3
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=99.49 E-value=5.5e-14 Score=87.68 Aligned_cols=66 Identities=29% Similarity=0.486 Sum_probs=57.8
Q ss_pred ccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278 31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 101 (144)
Q Consensus 31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k 101 (144)
+..|++++|++||+.+||++|.+.|++|+|+|..|.+++ +++.+.-++. .+-||+..++..++.+|
T Consensus 1 ~~~w~~~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~---~~~~l~~lgi--~~~~~r~~ll~~i~~l~ 66 (68)
T smart00454 1 VSQWSPESVADWLESIGLEQYADNFRKNGIDGALLLLLT---SEEDLKELGI--TKLGHRKKILKAIQKLK 66 (68)
T ss_pred CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcC---hHHHHHHcCC--CcHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999996 4555666665 68899999999998876
No 4
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=99.48 E-value=5.3e-14 Score=87.51 Aligned_cols=63 Identities=32% Similarity=0.514 Sum_probs=54.7
Q ss_pred CCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278 33 LLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 101 (144)
Q Consensus 33 ~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k 101 (144)
.|+.++|++||+++|+++|.+.|++|+|+|..|.+|+ ++-|+.++. ...||+.+++.+++.+|
T Consensus 1 ~w~~~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~----~~dL~~lgi--~~~g~r~~i~~~i~~l~ 63 (63)
T cd00166 1 NWSPEDVAEWLESLGLGQYADNFRENGIDGDLLLLLT----EEDLKELGI--TLPGHRKKILKAIQKLK 63 (63)
T ss_pred CCCHHHHHHHHHHcChHHHHHHHHHcCCCHHHHhHCC----HHHHHHcCC--CCHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999984 444556665 55699999999998764
No 5
>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]
Probab=98.39 E-value=1.1e-07 Score=81.22 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=42.3
Q ss_pred ccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHH
Q 032278 29 HALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQ 75 (144)
Q Consensus 29 l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~ 75 (144)
..+.-||..||++||+.++|.+|++.|.+|.|||+.|.+|+|..--+
T Consensus 205 Kpl~~Wsk~DV~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~~ 251 (272)
T KOG4375|consen 205 KPLQRWSKIDVNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFRG 251 (272)
T ss_pred cccceeccccHHHHHHhhhhhhcchhhhhcccccchhhhcchhhhhc
Confidence 35688999999999999999999999999999999999998865433
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.33 E-value=5.2e-07 Score=84.26 Aligned_cols=69 Identities=23% Similarity=0.362 Sum_probs=56.6
Q ss_pred cccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccc-hHHHHHHHHHHHHHHH
Q 032278 30 ALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWG-DFITLCKELRRIKVAC 104 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~g-d~itl~~el~~~kv~~ 104 (144)
.+-.|++-||.-|+..|||+.|.+.|.++.+||.-|++||..... +++ -|+-| ++=.|+.||+.+|||.
T Consensus 461 qVPgWt~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk---~Dv---GM~SGl~RKRFlRELqtLKv~A 530 (832)
T KOG3678|consen 461 QVPGWTCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLK---HDV---GMISGLHRKRFLRELQTLKVAA 530 (832)
T ss_pred cCCCcchHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhh---hhh---hhhhhhhHHHHHHHHHHHHHhh
Confidence 567899999999999999999999999999999999999644332 222 24444 4557999999999985
No 7
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=97.97 E-value=4.3e-06 Score=80.88 Aligned_cols=62 Identities=24% Similarity=0.427 Sum_probs=51.7
Q ss_pred cccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHH---HHHH
Q 032278 30 ALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITL---CKEL 97 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl---~~el 97 (144)
...+|+.|+|++||+.+||.+|...|+.|.|.|.+|++|-.-.. .+++. ||.||+-.+ |+||
T Consensus 994 ~~~~w~seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDL----kdlgv--tkVGhvkril~aIkdl 1058 (1099)
T KOG1170|consen 994 NIPYWTSEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDL----KDLGV--TKVGHVKRILSAIKDL 1058 (1099)
T ss_pred cCccccHHHHHHHHhccccchhhhhhhccCcccceeeecCcccc----cccch--hhhHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999999965443 34444 899987544 5666
No 8
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=97.42 E-value=0.00014 Score=50.65 Aligned_cols=68 Identities=31% Similarity=0.493 Sum_probs=46.1
Q ss_pred CcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278 27 MPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV 102 (144)
Q Consensus 27 ~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv 102 (144)
.+.+-..||.+||..||. +.+++. --|..=+|||+.|-.||++ .|+++.-...||. |-..|+.||-
T Consensus 13 ~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~--~~~~~f~~~G~~Lc~lt~e------~F~~~~~~~~G~~--Ly~~L~~Lk~ 82 (84)
T PF02198_consen 13 LPKDPRLWTKEDVLQWLRWVVREFDLPA--IDFSRFNMNGRELCSLTKE------DFRRRFPSGYGDI--LYSHLQLLKK 82 (84)
T ss_dssp SCSSGGG--HHHHHHHHHHHHHHTT-SS--CHGGGGTS-HHHHHHSHHH------HHHHHSTHTTHHH--HHHHHHHHHH
T ss_pred CCCChhhCCHHHHHHHHHHHHHhcCCCc--CchhccCCCHHHHHHcCHH------HHHHHcCCCcHHH--HHHHHHHHHH
Confidence 366778999999999995 334443 2355559999999999654 4777766678885 5677888876
Q ss_pred HH
Q 032278 103 AC 104 (144)
Q Consensus 103 ~~ 104 (144)
+|
T Consensus 83 ~~ 84 (84)
T PF02198_consen 83 CC 84 (84)
T ss_dssp H-
T ss_pred cc
Confidence 65
No 9
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.04 E-value=0.00073 Score=64.59 Aligned_cols=41 Identities=32% Similarity=0.506 Sum_probs=37.1
Q ss_pred ccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCccc
Q 032278 31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMF 71 (144)
Q Consensus 31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~ 71 (144)
...|.+--|-.||.+|||+||.+.|-+|-|||+-|..||-.
T Consensus 620 a~klDv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvn 660 (861)
T KOG1899|consen 620 ANKLDVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVN 660 (861)
T ss_pred ccchhHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHh
Confidence 46788888999999999999999999999999999999643
No 10
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.02 E-value=0.00036 Score=66.65 Aligned_cols=52 Identities=27% Similarity=0.280 Sum_probs=44.9
Q ss_pred CCcccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHH
Q 032278 26 DMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQIL 77 (144)
Q Consensus 26 ~~~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il 77 (144)
+++..|.+|+.|.||+||.++||+||..--+.---.|+-|++.|.-..|--|
T Consensus 542 d~~~pfa~W~~EqvcnWlae~Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeL 593 (861)
T KOG1899|consen 542 DPPLPFADWRSEQVCNWLAEIGLGQYMNEVRRWVRSGRTFLTASPQDYEKEL 593 (861)
T ss_pred CCCCchhhccHHHHHHHHHHhchHHHHHHHHHHHhcCchhhcCCHHHHHHHh
Confidence 4577799999999999999999999999988888899999988876666443
No 11
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=96.88 E-value=0.00068 Score=62.60 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=39.7
Q ss_pred ccccCCChhHHHHHHHh-cCcchHHHHhhHcCcChhhhccCcccchH
Q 032278 29 HALTLLSFQDVGLWLEE-INLGGYRQIFKENGVNGEYLEGMSMFTTE 74 (144)
Q Consensus 29 l~~~~WS~EDVa~WLee-iGL~qYre~Fk~NnIdG~eLi~Ltk~T~e 74 (144)
--+-+||.|++-.||-+ ..|+||++.|+.|+|+|..|+.|..-.++
T Consensus 130 Sev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~~ 176 (575)
T KOG4403|consen 130 SEVHNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNSD 176 (575)
T ss_pred hhhhcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCchH
Confidence 35679999999999865 59999999999999999999999765443
No 12
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=96.85 E-value=0.0013 Score=45.11 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=42.9
Q ss_pred cCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278 32 TLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 101 (144)
Q Consensus 32 ~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k 101 (144)
..||.++|..||. +-+|+.=.--|..-+|||++|-.||++ +|++|+-- .||.+ -..|++|+
T Consensus 3 ~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~e------dF~~~~p~-~GdiL--~~~l~~~~ 67 (68)
T cd08757 3 QYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEE------EFREAAGS-YGSLL--YAELQRLT 67 (68)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHH------HHHHHcCC-cHHHH--HHHHHHHh
Confidence 5799999999997 345665222344449999999999775 57777543 89964 45666553
No 13
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=96.60 E-value=0.003 Score=44.70 Aligned_cols=64 Identities=30% Similarity=0.426 Sum_probs=45.5
Q ss_pred CcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278 27 MPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 101 (144)
Q Consensus 27 ~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k 101 (144)
.+.+-..||.+||..||+ +.+|+.-. |..=+|||++|-.||++ +|.+|+- ..||. |-..|+.+|
T Consensus 13 ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~--~~~f~m~G~~Lc~ls~e------dF~~~~p-~~Gdi--L~~hL~~Lk 80 (82)
T smart00251 13 IPADPQLWTEDHVLEWLEWAVKEFSLSPID--FSKFDMSGKELCSMSKE------EFLERAP-FGGDI--LWSHLQILR 80 (82)
T ss_pred CCCChhhCCHHHHHHHHHHHHHhcCCCCCC--cccCCCCHHHHHcCCHH------HHHHHcC-CchHH--HHHHHHHHH
Confidence 355778999999999996 45665442 33338999999999765 4667765 67885 455666655
No 14
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=96.54 E-value=0.0057 Score=43.30 Aligned_cols=67 Identities=27% Similarity=0.182 Sum_probs=50.2
Q ss_pred cCCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278 25 NDMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI 100 (144)
Q Consensus 25 l~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~ 100 (144)
++.+.+-..||.++|..||+ +-+|+. -+..=+|||++|=.||++ +|.+|+-- -||. |-..|.-+
T Consensus 4 L~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~e------dF~~r~p~-~Gdi--L~~hL~~l 71 (76)
T cd08532 4 LGISPDPYQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEE------DFRRRAPQ-GGDT--LHAQLDIW 71 (76)
T ss_pred CCCCCChhhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHH------HHHHHcCC-chhH--HHHHHHHH
Confidence 45677888999999999985 568888 444449999999999775 47777544 7886 45566666
Q ss_pred HHH
Q 032278 101 KVA 103 (144)
Q Consensus 101 kv~ 103 (144)
|-|
T Consensus 72 k~a 74 (76)
T cd08532 72 KSA 74 (76)
T ss_pred HHh
Confidence 654
No 15
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=96.36 E-value=0.0021 Score=46.54 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=27.3
Q ss_pred cccCCChhHHHHHHH-hcCcch---HHHHhhHcCcChhhhccCc
Q 032278 30 ALTLLSFQDVGLWLE-EINLGG---YRQIFKENGVNGEYLEGMS 69 (144)
Q Consensus 30 ~~~~WS~EDVa~WLe-eiGL~q---Yre~Fk~NnIdG~eLi~Lt 69 (144)
+|.+||.|||..|-. ++|+++ +-.-|++|+|+|.-|.-||
T Consensus 2 ~~~~Wsv~eVv~WC~~~L~l~~~d~l~~~l~en~I~Gd~L~eLt 45 (75)
T PF09235_consen 2 DFSNWSVDEVVSWCISSLELDDEDPLCNNLRENDITGDVLPELT 45 (75)
T ss_dssp -TTT--HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHH
T ss_pred ccccccHHHHHHHHHHhcCCCCCCHHHHHHHHccCccchhhhcc
Confidence 578999999999964 346654 5566999999999998874
No 16
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=96.01 E-value=0.0058 Score=41.41 Aligned_cols=58 Identities=28% Similarity=0.359 Sum_probs=41.4
Q ss_pred cCCChhHHHHHHHh----cCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278 32 TLLSFQDVGLWLEE----INLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI 100 (144)
Q Consensus 32 ~~WS~EDVa~WLee----iGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~ 100 (144)
..||.++|..||.- -+|+. --+..-++||++|-.||++ +|.+|+-. .||.+ -..|+.+
T Consensus 3 ~~Wt~~~V~~Wl~w~~~~f~L~~--~~~~~F~m~G~~Lc~ls~e------dF~~~~p~-~GdiL--~~hL~~l 64 (66)
T cd08203 3 RLWTKEHVLQWLEWAVKEFSLPP--IDFSKFNMNGKELCLLTKE------DFLRRAPS-GGDIL--YEHLQLL 64 (66)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCC--CChhhcCCCHHHHHhCCHH------HHHHHcCC-cHHHH--HHHHHHH
Confidence 57999999999964 57776 3344449999999999765 47777544 88864 3444443
No 17
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=95.88 E-value=0.0045 Score=35.06 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=15.2
Q ss_pred hhhhheecccceeEeee
Q 032278 8 LTFLVYGRKQKSVNIWF 24 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWq 24 (144)
-.+|||||.|++|+||.
T Consensus 23 ~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 23 GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEETTSEEEEEE
T ss_pred cccceeeCCCCEEEEEC
Confidence 36899999999999995
No 18
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=95.06 E-value=0.025 Score=41.26 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=43.9
Q ss_pred CCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278 26 DMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 91 (144)
Q Consensus 26 ~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i 91 (144)
+.|.+-..||.++|..||. +-+|+.. -+..=++||++|=.||++ +|.+|+--.-||.+
T Consensus 14 ~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v--~~~~F~m~Gk~LC~Ls~e------dF~~r~p~~~GdiL 75 (89)
T cd08534 14 KIPYDPMEWTEDQVLHWVVWAVKEFSLTDI--DLSDWNITGRELCSLTQE------EFFQRVPKDPGDIF 75 (89)
T ss_pred CCCCChHHcCHHHHHHHHHHHHHHcCCCCC--ChhhcCCCHHHHhcCCHH------HHHHHcCCCccHHH
Confidence 4567778999999999985 5677754 244448999999999875 57777654578864
No 19
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=94.92 E-value=0.033 Score=49.71 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=52.6
Q ss_pred CChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhh
Q 032278 34 LSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK 106 (144)
Q Consensus 34 WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~ 106 (144)
--..-|++||+.|||+.|.+.|-+|+-|- |..++.+|.|. |.-|+. ++=+|+=+|++-++.+|-+--.
T Consensus 213 ~~~~~~~ewL~~i~le~y~~~~L~nGYd~--le~~k~i~e~d-L~~lgI--~nP~Hr~kLL~av~~~~e~d~~ 280 (361)
T KOG4384|consen 213 PHPKSLEEWLRRIGLEEYIETLLENGYDT--LEDLKDITEED-LEELGI--DNPDHRKKLLSAVELLKEIDSG 280 (361)
T ss_pred CCchHHHHHHHHhhHHHHHHHHHHcchHH--HHHHHhccHHH-HHHhCC--CCHHHHHHHHHHHHHHHhcccc
Confidence 44678999999999999999999997652 55555554444 445666 8999999999999999876443
No 20
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=94.87 E-value=0.026 Score=39.94 Aligned_cols=56 Identities=27% Similarity=0.291 Sum_probs=40.1
Q ss_pred ccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278 29 HALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 91 (144)
Q Consensus 29 l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i 91 (144)
.+-..||.++|..||+ |-+|+... .-.=.++||++|-.||++ +|.+++--.-||++
T Consensus 3 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~~~-~~~F~~m~Gk~LC~Lske------dF~~~ap~~~GdiL 62 (75)
T cd08540 3 ADPTLWSTDHVRQWLEWAVKEYGLPDVD-VLLFQNIDGKELCKMTKD------DFQRLTPSYNADIL 62 (75)
T ss_pred CChhhcCHHHHHHHHHHHHHHhCCCCCC-cccccCCCHHHHHhCCHH------HHHHHcCCCCchHH
Confidence 4557899999999985 66887743 212246999999999875 46677544567764
No 21
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=94.33 E-value=0.085 Score=37.89 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=46.3
Q ss_pred ccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278 29 HALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 101 (144)
Q Consensus 29 l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k 101 (144)
.+-..||.++|..||. +-+|+.-.-.|..=+|||++|=+||++ +|++++- ..||.+ -..|+.||
T Consensus 5 ~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~e------eF~~~~p-~~GdvL--y~~lq~~~ 72 (78)
T cd08538 5 VHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQE------EFIEAAG-ICGEYL--YFILQNIR 72 (78)
T ss_pred CCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHH------HHHHHcc-cchHHH--HHHHHHHH
Confidence 4557899999999985 567765433454559999999999765 4666643 388874 45677776
No 22
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.28 E-value=0.067 Score=52.69 Aligned_cols=65 Identities=23% Similarity=0.491 Sum_probs=51.0
Q ss_pred hHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhh
Q 032278 37 QDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK 106 (144)
Q Consensus 37 EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~ 106 (144)
-.|++||+.|++++|.+.|.+++++- +...+..|.|+++++ .++--||.=+++--|+.+|.-...
T Consensus 924 ~sv~~WL~aIkm~rY~~~F~~ag~~s--~~~V~q~s~eDl~~~---Gitl~GhqkkIl~SIq~m~~q~~~ 988 (996)
T KOG0196|consen 924 RSVGDWLEAIKMGRYKEHFAAAGYTS--FEDVAQMSAEDLLRL---GITLAGHQKKILSSIQAMRAQMRQ 988 (996)
T ss_pred CCHHHHHHHhhhhHHHHHHHhcCccc--HHHHHhhhHHHHHhh---ceeecchhHHHHHHHHHHHHHhcc
Confidence 46999999999999999999999975 344455666666543 457889998888888888876544
No 23
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=94.18 E-value=0.04 Score=38.65 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=40.0
Q ss_pred ccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278 29 HALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 91 (144)
Q Consensus 29 l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i 91 (144)
.+-..||.++|..||+ +.+|..- -|..=+|||++|=.||++ +|.+|+--.-||.+
T Consensus 2 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~v--~~~~F~m~Gk~LC~ls~e------dF~~~~p~~~GdIL 60 (71)
T cd08533 2 KDPRLWTETHVRQWLLWAVNEFSLEGV--NFQKFCMSGRDLCALGKE------RFLELAPDFVGDIL 60 (71)
T ss_pred cChhhCCHHHHHHHHHHHHHHcCCCCC--CcccCCCCHHHHHcCCHH------HHHHHcCCCcchHH
Confidence 3456899999999985 5677643 233338999999999875 47777544568874
No 24
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=93.93 E-value=0.1 Score=38.26 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=47.7
Q ss_pred cCCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278 25 NDMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI 100 (144)
Q Consensus 25 l~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~ 100 (144)
++.+.+-..||.++|..||+ |.+|... -|..=+|||++|=.||++ +|.+|+----||.+ -..|..+
T Consensus 13 l~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i--~~~~F~m~Gk~LC~Ls~e------dF~~~~P~~~GdIL--~~HL~~L 82 (88)
T cd08542 13 LGIPKDPRQWTETHVRDWVMWAVNEFSLKGV--DFQKFCMNGAALCALGKE------CFLELAPDFVGDIL--WEHLEIL 82 (88)
T ss_pred cCCCCChhhCCHHHHHHHHHHHHHHcCCCCC--CcccCCCCHHHHHcCCHH------HHHhHcCCCccHHH--HHHHHHH
Confidence 35577888999999999985 5677654 233336999999999875 57777533368874 3444444
Q ss_pred HHHH
Q 032278 101 KVAC 104 (144)
Q Consensus 101 kv~~ 104 (144)
+-.|
T Consensus 83 ~k~~ 86 (88)
T cd08542 83 QKED 86 (88)
T ss_pred HHhc
Confidence 4333
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=93.70 E-value=0.028 Score=51.27 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=17.5
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
+|+||||||+|++||++..
T Consensus 164 ~wf~tgs~DrtikIwDlat 182 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLAT 182 (460)
T ss_pred eeEEecCCCceeEEEEccc
Confidence 6999999999999999954
No 26
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=93.59 E-value=0.069 Score=36.77 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=41.0
Q ss_pred cCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHH
Q 032278 32 TLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRR 99 (144)
Q Consensus 32 ~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~ 99 (144)
..||.++|..||+ +-+|+.- -+..=++||++|-.||++ +|++|+-. -||.+ -.++|+
T Consensus 3 ~~Ws~~~V~~WL~w~~~ef~L~~~--~~~~F~m~Gk~LC~ls~e------dF~~r~P~-~GdiL--~~~lq~ 63 (66)
T cd08536 3 RSWSREHVRTWLRWVSARYQLEVV--DLDKFLMNGKGLCLMSLE------GFLYRVPV-GGKLL--YEDFQR 63 (66)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCC--CccccCCCHHHHHcCCHH------HHHhhcCC-ccHHH--HHHHHH
Confidence 5799999999986 5577773 233336999999999765 47777644 88875 445543
No 27
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=93.23 E-value=0.058 Score=39.70 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=39.6
Q ss_pred CCcccccCCChhHHHHHHH----hcCcchHHH-HhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278 26 DMPHALTLLSFQDVGLWLE----EINLGGYRQ-IFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 91 (144)
Q Consensus 26 ~~~l~~~~WS~EDVa~WLe----eiGL~qYre-~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i 91 (144)
..+.+-..||.++|..||. +-+|...-- -|. +|+|++|=.||++ +|.+++----||.+
T Consensus 12 ~IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F~--~m~Gk~LC~Lske------dF~~~~p~~~gdiL 74 (91)
T cd08541 12 IVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQ--NMDGKELCKMNKE------DFLRATSLYNTEVL 74 (91)
T ss_pred eCCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhcc--CCCHHHHHhCCHH------HHHHHcCCCccHHH
Confidence 3466778999999999985 668864222 132 7999999999775 35555433346653
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.16 E-value=0.033 Score=53.63 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=16.6
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.++|||||||+.+||+++.
T Consensus 476 kLiAT~SqDktaKiW~le~ 494 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQ 494 (775)
T ss_pred ceEEecccccceeeecccC
Confidence 3689999999999999943
No 29
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=93.13 E-value=0.09 Score=38.64 Aligned_cols=58 Identities=29% Similarity=0.418 Sum_probs=42.3
Q ss_pred CCcccccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278 26 DMPHALTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 91 (144)
Q Consensus 26 ~~~l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i 91 (144)
..+.+-..||.++|..||. +.+|..-. |..=+|||++|=.||++ +|.+|+----||.+
T Consensus 14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~--~~~F~m~Gk~LC~Ls~e------dF~~~ap~~~GdIL 75 (89)
T cd08543 14 GIPKNPWLWTEQQVCQWLLWATNEFSLVNVN--FQQFGMNGQELCNLGKE------RFLELAPDFVGDIL 75 (89)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHcCCCCCC--cccCCCChHHHHcCCHH------HHHhHcCCCcchHH
Confidence 4567778999999999985 66777632 22236999999999875 47777543358875
No 30
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=92.72 E-value=0.079 Score=36.76 Aligned_cols=52 Identities=27% Similarity=0.264 Sum_probs=37.8
Q ss_pred ccCCChhHHHHHHH----hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278 31 LTLLSFQDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 91 (144)
Q Consensus 31 ~~~WS~EDVa~WLe----eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i 91 (144)
-..||.++|..||. +.+|+... |..=++||++|-.||++ +|.+|+- .-||.+
T Consensus 3 P~~Wt~~~V~~WL~wa~~ef~L~~i~--~~~F~mnGk~LC~ls~e------dF~~r~p-~~GdiL 58 (68)
T cd08535 3 PRYWSRDDVLQWLRWAENEFSLPPID--SNTFEMNGKALCLLTKE------DFRYRSP-HSGDVL 58 (68)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCCCC--hhccCCCHHHHhcCCHH------HHhhhCC-CchHHH
Confidence 36799999999985 55776632 33347999999999765 4666754 468864
No 31
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=92.53 E-value=0.14 Score=48.59 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=47.0
Q ss_pred cccCCChhHHHHHHHhc--CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHH
Q 032278 30 ALTLLSFQDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITL 93 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeei--GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl 93 (144)
.+..||+..|++|++-+ -+.+|...|+.+.|.|+.|+++.-.+.|-+ .+ -.|||.++.
T Consensus 3 ~v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~l----g~--rrig~qeli 62 (638)
T KOG1738|consen 3 PVETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLETL----GV--RRIGHQELI 62 (638)
T ss_pred cccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHHH----hh--hhhhhHHHH
Confidence 56899999999999987 489999999999999999999966655544 33 456666544
No 32
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=92.19 E-value=0.074 Score=25.96 Aligned_cols=16 Identities=13% Similarity=0.540 Sum_probs=14.5
Q ss_pred hhhheecccceeEeee
Q 032278 9 TFLVYGRKQKSVNIWF 24 (144)
Q Consensus 9 ~~LATGSmDKsV~IWq 24 (144)
.++++|+.|+++.+|+
T Consensus 25 ~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 25 KYLASASDDGTIKLWD 40 (40)
T ss_pred CEEEEecCCCeEEEcC
Confidence 5789999999999995
No 33
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=91.76 E-value=0.092 Score=44.13 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=32.9
Q ss_pred hhHHHHHHHhcCcchHHHHhhHcCcChhhhccCccc
Q 032278 36 FQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMF 71 (144)
Q Consensus 36 ~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~ 71 (144)
-|+|--||..+||+.|..+|+...||=..|..||-+
T Consensus 151 ~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~ 186 (216)
T KOG4374|consen 151 TEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEE 186 (216)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 478999999999999999999999999999999543
No 34
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=91.67 E-value=0.11 Score=36.66 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=37.8
Q ss_pred ccccCCChhHHHHHHH----hcCcchHHHHhhH-cCcChhhhccCcccchHHHHHHHhHhhhccchHH
Q 032278 29 HALTLLSFQDVGLWLE----EINLGGYRQIFKE-NGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 91 (144)
Q Consensus 29 l~~~~WS~EDVa~WLe----eiGL~qYre~Fk~-NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~i 91 (144)
.+-..||.++|..||+ +-+|+.. + +.. .+|||++|-.||++ +|.++.---=||.+
T Consensus 3 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~i-~-~~~F~~m~Gk~LC~lt~e------dF~~~~~~~~GdiL 62 (75)
T cd08531 3 ADPTLWTREHVRQWLEWAVKEYGLQDV-D-VSRFQNIDGKELCKMTKE------DFLRLTSAYNADVL 62 (75)
T ss_pred CChhhcCHHHHHHHHHHHHHHcCCCCC-C-hhhccCCChHHHHcCCHH------HHHHHcCCCcchHH
Confidence 4557899999999985 5677653 2 233 38999999999775 46666322246763
No 35
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=90.99 E-value=0.094 Score=48.15 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.7
Q ss_pred hhhheecccceeEeeec--------------CCcccccCCCh
Q 032278 9 TFLVYGRKQKSVNIWFN--------------DMPHALTLLSF 36 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql--------------~~~l~~~~WS~ 36 (144)
-|+|+||||++|.||.. ++.+.+..|+.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence 48999999999999998 22466777876
No 36
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=90.33 E-value=0.11 Score=47.16 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=16.0
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
.+|||||+||+|.+|++
T Consensus 286 ~ilAT~S~D~tV~LwDl 302 (422)
T KOG0264|consen 286 FILATGSADKTVALWDL 302 (422)
T ss_pred ceEEeccCCCcEEEeec
Confidence 47999999999999999
No 37
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=89.15 E-value=0.37 Score=29.35 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.7
Q ss_pred ccCCChhHHHHHHHhcCcc
Q 032278 31 LTLLSFQDVGLWLEEINLG 49 (144)
Q Consensus 31 ~~~WS~EDVa~WLeeiGL~ 49 (144)
|..||.+|..+||++.|.+
T Consensus 1 fdtWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCCCHHHHHHHHHHcCCC
Confidence 5789999999999997765
No 38
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.09 E-value=0.15 Score=47.38 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=37.8
Q ss_pred hhhheecccceeEeeecC---------------CcccccCCChhHH---------HHHHHhcCcchHHHHhhHc
Q 032278 9 TFLVYGRKQKSVNIWFND---------------MPHALTLLSFQDV---------GLWLEEINLGGYRQIFKEN 58 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~---------------~~l~~~~WS~EDV---------a~WLeeiGL~qYre~Fk~N 58 (144)
++|||||.|.|.-||+.. .+..++.||+||- ..||=+.-=++.+..|..+
T Consensus 237 kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~ 310 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG 310 (519)
T ss_pred eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC
Confidence 689999999999999982 2668899998862 2455555566667777666
No 39
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.16 E-value=0.2 Score=48.96 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=43.4
Q ss_pred ccccCCChhHHH-HHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhH
Q 032278 29 HALTLLSFQDVG-LWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRR 82 (144)
Q Consensus 29 l~~~~WS~EDVa-~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r 82 (144)
+.|-++.-|=|| +||-.+||+||+..|-+-.+|-+-|.+|||-.++--|.-..-
T Consensus 667 laygdmnHewigneWLPslGLpQYrsyFme~LvDARMLdhLsKkdLr~~Lkmvds 721 (916)
T KOG0249|consen 667 LAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLSKKDLRGHLKMVDS 721 (916)
T ss_pred hhhcccccceeccccccccCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555555565 599999999999999999999999999999888876654433
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.30 E-value=0.31 Score=47.24 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=17.0
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
-||||||.|+||.+|++++
T Consensus 378 ~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNN 396 (775)
T ss_pred cEEEEecCCceEEEEEecC
Confidence 4899999999999999943
No 41
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.02 E-value=0.22 Score=48.55 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=16.9
Q ss_pred hhhheecccceeEeeecC
Q 032278 9 TFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~ 26 (144)
+|||||+-||.|+||...
T Consensus 233 ~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 233 EWLATGGRDKMVKIWDMT 250 (839)
T ss_pred ceeeecCCCccEEEEecc
Confidence 699999999999999994
No 42
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=86.29 E-value=0.3 Score=46.94 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=22.3
Q ss_pred hhhheecccceeEeeec-----------CCcccccCCCh
Q 032278 9 TFLVYGRKQKSVNIWFN-----------DMPHALTLLSF 36 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql-----------~~~l~~~~WS~ 36 (144)
.|||+||.|+||+||-+ +.-+.+..|++
T Consensus 413 ~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P 451 (733)
T KOG0650|consen 413 EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNP 451 (733)
T ss_pred ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecC
Confidence 58999999999999998 33455666665
No 43
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=84.50 E-value=0.36 Score=44.54 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=25.8
Q ss_pred hhheecccceeEeeecCC------------cccccCCChhHHHHHHH
Q 032278 10 FLVYGRKQKSVNIWFNDM------------PHALTLLSFQDVGLWLE 44 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~------------~l~~~~WS~EDVa~WLe 44 (144)
.|||||.|-||++|+++- =..+.+||+| +.||.
T Consensus 129 ~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD--gk~iA 173 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD--GKKIA 173 (480)
T ss_pred eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC--cchhh
Confidence 689999999999999933 2367889987 45554
No 44
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.45 E-value=0.4 Score=46.10 Aligned_cols=16 Identities=31% Similarity=0.729 Sum_probs=15.2
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
+|-+.||||||++|++
T Consensus 382 fLLSSSMDKTVRLWh~ 397 (712)
T KOG0283|consen 382 FLLSSSMDKTVRLWHP 397 (712)
T ss_pred eeEeccccccEEeecC
Confidence 6889999999999999
No 45
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.41 E-value=0.5 Score=41.54 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=17.5
Q ss_pred hhhheecccceeEeeecCCc
Q 032278 9 TFLVYGRKQKSVNIWFNDMP 28 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~ 28 (144)
--||+|+||.+|+||+.++.
T Consensus 176 krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred ceeeccCCccceeeeecCCc
Confidence 45899999999999999773
No 46
>PF12979 DUF3863: Domain of Unknown Function with PDB structure (DUF3863); InterPro: IPR024334 This entry represents a functionally uncharacterised domain found in bacterial sequences. The structure of one of the sequences, A6LGL1 from SWISSPROT from Parabacteroides distasonis atcc 8503, has been determined.; PDB: 3LM3_A.
Probab=83.88 E-value=0.23 Score=44.08 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=42.1
Q ss_pred CCcccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcc-------cchHHHHHHHhHhhhccchHHHHH
Q 032278 26 DMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSM-------FTTEQILRFIRRCHMKWGDFITLC 94 (144)
Q Consensus 26 ~~~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk-------~T~e~il~~i~r~~~k~gd~itl~ 94 (144)
+..+++..|-.|+ .+|=.-.|...++++|..|+=||+--=.+|- ..-.||-+|+-+|+-|+||-|++.
T Consensus 22 EvsRdvkL~~rDE-~~wHtl~gVr~~reAfa~~nP~grLTWgft~nALed~~~nyr~IR~y~v~c~~k~GDevsyf 96 (351)
T PF12979_consen 22 EVSRDVKLHPRDE-TSWHTLEGVRALREAFASNNPDGRLTWGFTLNALEDGRPNYRQIRDYVVECQQKYGDEVSYF 96 (351)
T ss_dssp BSSSS-BSS-----GGG--HHHHHHHHHHHHTT-TT---EEEE-HHHHH--SHHHHHHHHHHHHHHHHH--EEEE-
T ss_pred eeecccccccccc-chhhHHHHHHHHHHHHHhcCCCceEEEeeecchhhcCChhHHHHHHHHHHHHHHhCCceeec
Confidence 4567777786554 5788889999999999999999985433332 223589999999999999988753
No 47
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=83.81 E-value=0.56 Score=41.40 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.4
Q ss_pred hhhhhhhheecccceeEeeecCC
Q 032278 5 FDALTFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 5 ~~~~~~LATGSmDKsV~IWql~~ 27 (144)
--.-.+|||.|-||+|+||..+.
T Consensus 224 SPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 224 SPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred CCCCcEEEeecCCceEEEEecCC
Confidence 34568999999999999999854
No 48
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=83.62 E-value=0.54 Score=45.23 Aligned_cols=17 Identities=18% Similarity=0.612 Sum_probs=16.1
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
-|+||||-||||++|.+
T Consensus 548 ~Y~aTGSsD~tVRlWDv 564 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDV 564 (707)
T ss_pred cccccCCCCceEEEEEc
Confidence 48999999999999999
No 49
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=81.56 E-value=0.76 Score=42.42 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=17.3
Q ss_pred hhheecccceeEeeecCCcc
Q 032278 10 FLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l 29 (144)
.|||||.|.|+|||+|..+.
T Consensus 359 ~lATgs~Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRMRS 378 (459)
T ss_pred EEeecCCCCcEEEeeecccc
Confidence 58999999999999996533
No 50
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=80.52 E-value=0.78 Score=44.53 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=20.8
Q ss_pred hhhheecccceeEeeecCCcccccCCCh
Q 032278 9 TFLVYGRKQKSVNIWFNDMPHALTLLSF 36 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~l~~~~WS~ 36 (144)
++||+||-|+.|+||+|...-+...|..
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~ 234 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNER 234 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCcccccc
Confidence 5899999999999999965443333333
No 51
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=79.91 E-value=0.93 Score=44.56 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=16.7
Q ss_pred hhhheecccceeEeeecC
Q 032278 9 TFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~ 26 (144)
-+|||||-|..|+||+|+
T Consensus 93 ~LLAT~S~D~~VKiW~lp 110 (1012)
T KOG1445|consen 93 ELLATCSRDEPVKIWKLP 110 (1012)
T ss_pred hhhhcccCCCeeEEEecC
Confidence 479999999999999996
No 52
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=78.42 E-value=0.93 Score=41.95 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=16.6
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+|+.||.|.|++||++..
T Consensus 422 RLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred cEEEEcCCCceEEEEEeee
Confidence 3789999999999999943
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.10 E-value=1.2 Score=43.35 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=17.1
Q ss_pred hhheecccceeEeeecCCcc
Q 032278 10 FLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l 29 (144)
-+|++|-|||||||+++.+.
T Consensus 155 tFaS~sLDrTVKVWslgs~~ 174 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPH 174 (794)
T ss_pred ceeeeeccccEEEEEcCCCC
Confidence 36999999999999996644
No 54
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=77.93 E-value=1.6 Score=31.28 Aligned_cols=63 Identities=27% Similarity=0.390 Sum_probs=40.9
Q ss_pred cccCCChhHHHHHHHhc----CcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278 30 ALTLLSFQDVGLWLEEI----NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 101 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeei----GL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k 101 (144)
+-..||.++|.+||.-. .|.--..-|..=++||+.|=+|+++ +|+.+.- ..||.+ -..|+.+|
T Consensus 4 ~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e------~F~~~~p-~~GdiL--y~~l~~~~ 70 (74)
T cd08539 4 HPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQ------EFTRAAG-TAGQLL--YSNLQHLK 70 (74)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHH------HHhhcCC-chHHHH--HHHHHHHh
Confidence 44689999999999765 4444334566669999999999764 3554432 255543 33444443
No 55
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=77.05 E-value=1.1 Score=44.01 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=15.9
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
..||+||-||||+||.+
T Consensus 491 ~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDI 507 (893)
T ss_pred CeEEeccccceEEEEEe
Confidence 47999999999999999
No 56
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=76.45 E-value=1.2 Score=40.01 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=16.7
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
..|||||-|||++-|+...
T Consensus 128 ~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 128 QCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred ceeEecccccceeecccCC
Confidence 4789999999999999843
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=74.95 E-value=1.5 Score=37.93 Aligned_cols=16 Identities=31% Similarity=0.715 Sum_probs=15.6
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
++||||+|++++||.+
T Consensus 217 ~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDL 232 (456)
T ss_pred EEEEecCCceEEEeec
Confidence 7999999999999999
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=74.68 E-value=1.7 Score=39.95 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.5
Q ss_pred hhhhhheecccceeEeeecCCcc
Q 032278 7 ALTFLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 7 ~~~~LATGSmDKsV~IWql~~~l 29 (144)
-|..+||||+|+.|+||.+..+.
T Consensus 78 ~ls~~aSGs~DG~VkiWnlsqR~ 100 (433)
T KOG0268|consen 78 KLSTVASGSCDGEVKIWNLSQRE 100 (433)
T ss_pred hhhhhhccccCceEEEEehhhhh
Confidence 36789999999999999996644
No 59
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=74.35 E-value=1.7 Score=38.55 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=16.6
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+|||||+||+|++-.+++
T Consensus 102 eliatgsndk~ik~l~fn~ 120 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNA 120 (350)
T ss_pred CeEEecCCCceEEEEeccc
Confidence 4799999999999998854
No 60
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=74.12 E-value=1.6 Score=44.96 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=16.0
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
-++||||.|+||+||+.
T Consensus 1062 s~FvsgS~DGtVKvW~~ 1078 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNL 1078 (1431)
T ss_pred ceEEEecCCceEEEeee
Confidence 57999999999999999
No 61
>PTZ00421 coronin; Provisional
Probab=73.08 E-value=2 Score=38.51 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=16.8
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+|||||.|++|+||+++.
T Consensus 89 ~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 89 QKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred CEEEEEeCCCEEEEEecCC
Confidence 3799999999999999854
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=72.99 E-value=2.2 Score=38.02 Aligned_cols=28 Identities=11% Similarity=0.294 Sum_probs=23.3
Q ss_pred hhheecccceeEeeecCCcccccCCChh
Q 032278 10 FLVYGRKQKSVNIWFNDMPHALTLLSFQ 37 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l~~~~WS~E 37 (144)
+-|.||-|+|++|||..+...+.-|.+-
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~~~~~~~ 308 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTYGLWKCV 308 (334)
T ss_pred eeeccCCCceEEEEEecCCCchhhcccc
Confidence 4589999999999999888777777653
No 63
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=72.37 E-value=1.7 Score=38.42 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=22.2
Q ss_pred hhhheecccceeEeeecCCcccccCCC
Q 032278 9 TFLVYGRKQKSVNIWFNDMPHALTLLS 35 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~l~~~~WS 35 (144)
.||+|||.|.++++|.+....-+..|.
T Consensus 271 ~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 271 EYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred cEEEecCCCCceeecccccCceeeecC
Confidence 689999999999999997766555543
No 64
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=72.26 E-value=2.1 Score=41.73 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=17.0
Q ss_pred hhheecccceeEeeecCCc
Q 032278 10 FLVYGRKQKSVNIWFNDMP 28 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~ 28 (144)
++||+|-||+|+||..++.
T Consensus 632 ~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 632 YFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eeEEecCCceEEEEeccCc
Confidence 5999999999999999664
No 65
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=71.72 E-value=1.3 Score=39.19 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=17.2
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
++|||||.||+|+||....
T Consensus 28 ~ilAscg~Dk~vriw~~~~ 46 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSS 46 (312)
T ss_pred eEEEeecCCceEEEEecCC
Confidence 4799999999999999975
No 66
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.66 E-value=2 Score=37.21 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=17.0
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.++++||.|++|+||.+..
T Consensus 259 ~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 259 NLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred CEEEEecCCCcEEEEeccC
Confidence 5899999999999999943
No 67
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=71.38 E-value=2.5 Score=41.72 Aligned_cols=38 Identities=34% Similarity=0.558 Sum_probs=34.6
Q ss_pred cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhh
Q 032278 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYL 65 (144)
Q Consensus 28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eL 65 (144)
-.++.-||-|-|--|+..|||+.|-.-.++-+|+|.-|
T Consensus 755 i~DvlVWsN~RvirWV~~igL~eya~NL~eSGVHGaLl 792 (916)
T KOG0249|consen 755 ITDVLVWSNDRVIRWVQSIGLGEYANNLKESGVHGALL 792 (916)
T ss_pred cccceEeecHHHHHHHHhcCHHHHhhhhhhhcccceee
Confidence 45788999999999999999999999999999999744
No 68
>KOG3930 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.30 E-value=4.6 Score=36.68 Aligned_cols=51 Identities=29% Similarity=0.345 Sum_probs=40.4
Q ss_pred hHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHHHHhhCcc
Q 032278 50 GYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQ 109 (144)
Q Consensus 50 qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv~~~~~~~ 109 (144)
.|-..|-+|-|.-+-|+.|.|++ |+-++. +-.||.|-. ||++|++|-.-+.
T Consensus 20 ~YA~~Fv~NRIqk~MLldLnKe~----l~ElGv--T~iGDiiaI---Lrh~K~v~~q~~r 70 (389)
T KOG3930|consen 20 KYAKSFVTNRIQKEMLLDLNKET----LSELGV--TAIGDIIAI---LRHIKAVKSQIER 70 (389)
T ss_pred hHHHHHHhhhhhHHHHhhhhHHH----HHHhch--hhhhhHHHH---HHHHHHHHHHHHH
Confidence 69999999999999999997654 455555 778998876 6889998865443
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=70.34 E-value=2 Score=42.43 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.7
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
.+++|||-||+|+||-+
T Consensus 563 klivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 563 KLIVTGSADKNVKIWGL 579 (888)
T ss_pred CeEEeccCCCceEEecc
Confidence 47899999999999988
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=69.98 E-value=2.2 Score=39.08 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.1
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
+|.+||+|+|++||+.
T Consensus 263 ~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDC 278 (537)
T ss_pred EEEEEecCCcEEeEec
Confidence 5678888888888887
No 71
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=69.01 E-value=3.3 Score=38.48 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=19.8
Q ss_pred hhheecccceeEeeecCCcccccCCC
Q 032278 10 FLVYGRKQKSVNIWFNDMPHALTLLS 35 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l~~~~WS 35 (144)
-+|+||-|-+|.||||+++....+-+
T Consensus 96 vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 96 VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred eeecCCCCceEEEEECCCcccccCcc
Confidence 48999999999999997744433333
No 72
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=67.98 E-value=3 Score=38.55 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=14.7
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
-+.|||||.||++|++
T Consensus 291 qvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDL 306 (460)
T ss_pred ceEEecCCceEEEeee
Confidence 3689999999999999
No 73
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=67.58 E-value=3.2 Score=36.83 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=16.6
Q ss_pred hhhheecccceeEeeecC
Q 032278 9 TFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~ 26 (144)
-||||.|-||||=||+++
T Consensus 118 ~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEID 135 (312)
T ss_pred CEEEEeeCCCeEEEEEec
Confidence 489999999999999994
No 74
>KOG4328 consensus WD40 protein [Function unknown]
Probab=67.37 E-value=2.6 Score=39.37 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=15.4
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
+|||+|.|.|++||++
T Consensus 337 ~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDL 352 (498)
T ss_pred heeecccCcceeeeeh
Confidence 7999999999999999
No 75
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=66.58 E-value=2.6 Score=39.70 Aligned_cols=48 Identities=27% Similarity=0.463 Sum_probs=33.2
Q ss_pred hhhheecccceeEeeecCC---------cccccCCChhHHHHHHHhcCcchHHHHhhHc
Q 032278 9 TFLVYGRKQKSVNIWFNDM---------PHALTLLSFQDVGLWLEEINLGGYRQIFKEN 58 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~---------~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~N 58 (144)
.|.||.++|+.|+||++.. +....+-|..+-+ |-..|.|.|+++|+.-
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDA 362 (545)
T ss_pred cEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhh
Confidence 6899999999999999943 3333444444433 3456778888887753
No 76
>PTZ00420 coronin; Provisional
Probab=66.40 E-value=3.1 Score=38.46 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=17.1
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+|||||.|++|+||+++.
T Consensus 88 ~lLASgS~DgtIrIWDi~t 106 (568)
T PTZ00420 88 EILASGSEDLTIRVWEIPH 106 (568)
T ss_pred CEEEEEeCCCeEEEEECCC
Confidence 4799999999999999964
No 77
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=66.40 E-value=15 Score=26.51 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=37.2
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhc-cCcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi-~Ltk~T~e~il~~i~r 82 (144)
..+|.+++..||+..|++.+.+.|..+.-.=++|. .....|.++++..|..
T Consensus 34 ~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~~~ls~~e~i~~l~~ 85 (114)
T TIGR00014 34 NPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSDPNLSDQELLDAMVA 85 (114)
T ss_pred CCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCccCCCHHHHHHHHHH
Confidence 67999999999999999877888877766555542 1123466778777655
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=65.89 E-value=2.8 Score=37.20 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=15.3
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
++||.|.||+++||.+
T Consensus 79 ~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDI 94 (313)
T ss_pred ceEEecCCceEEEEEe
Confidence 6899999999999999
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.13 E-value=3.5 Score=37.96 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=14.8
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
-++.||.|+||+||.+
T Consensus 370 ~vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 370 RVVSGSDDRTVKVWDL 385 (481)
T ss_pred ceeecCCCceEEEeee
Confidence 4689999999999999
No 80
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=64.80 E-value=3.2 Score=38.27 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=24.8
Q ss_pred hhhheecccceeEeeecC---------------CcccccCCChhH
Q 032278 9 TFLVYGRKQKSVNIWFND---------------MPHALTLLSFQD 38 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~---------------~~l~~~~WS~ED 38 (144)
++||+|+-|++.+||.|. .++.+..|++-|
T Consensus 315 ~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 315 PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence 489999999999999992 277888898544
No 81
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=64.71 E-value=3.5 Score=37.99 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.7
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
+.+|++|-|+|++||++..
T Consensus 271 ~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred ceEEeeecCceEEEEEecC
Confidence 4589999999999999944
No 82
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=64.50 E-value=3.5 Score=36.67 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=16.6
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
-+++.+|-||+|+||.++.
T Consensus 163 p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred cEEEEccCCceEEEEccCC
Confidence 3689999999999999955
No 83
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=64.50 E-value=3.2 Score=37.93 Aligned_cols=19 Identities=21% Similarity=0.217 Sum_probs=17.5
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
||||||.||+-|.||+...
T Consensus 119 tlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVST 137 (399)
T ss_pred eEEEecCCCccEEEEEccc
Confidence 7999999999999999954
No 84
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=63.58 E-value=3.2 Score=39.01 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=16.9
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
-+||+||-||+|+||.+..
T Consensus 465 ~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred cEEEecCCCCeeEeccccc
Confidence 4799999999999999844
No 85
>PTZ00421 coronin; Provisional
Probab=63.41 E-value=3.9 Score=36.67 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=17.0
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+|||||.|++|+||++..
T Consensus 139 ~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVER 157 (493)
T ss_pred CEEEEEeCCCEEEEEECCC
Confidence 4799999999999999954
No 86
>PLN00181 protein SPA1-RELATED; Provisional
Probab=62.86 E-value=5.2 Score=36.63 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=17.4
Q ss_pred hhhheecccceeEeeecCCc
Q 032278 9 TFLVYGRKQKSVNIWFNDMP 28 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~ 28 (144)
.+|+|||.|++|+||++...
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred CEEEEEECCCEEEEEeCCCC
Confidence 46899999999999998653
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=62.73 E-value=3.6 Score=38.52 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=22.2
Q ss_pred hhhheecccceeEeeecCCcccccCCChh
Q 032278 9 TFLVYGRKQKSVNIWFNDMPHALTLLSFQ 37 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~l~~~~WS~E 37 (144)
-||||++.|.+|++|++..-.+|..-..+
T Consensus 402 Y~Lat~add~~V~lwDLRKl~n~kt~~l~ 430 (506)
T KOG0289|consen 402 YWLATAADDGSVKLWDLRKLKNFKTIQLD 430 (506)
T ss_pred eEEEEEecCCeEEEEEehhhcccceeecc
Confidence 58999999999999999665554444433
No 88
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.76 E-value=4.4 Score=37.65 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=16.3
Q ss_pred hhheecccceeEeeecCC
Q 032278 10 FLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~ 27 (144)
.||.||-|+||++|.++.
T Consensus 258 VLaSgsaD~TV~lWD~~~ 275 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDT 275 (463)
T ss_pred eEEecCCCceEEEEEcCC
Confidence 689999999999999944
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=61.17 E-value=3.3 Score=41.08 Aligned_cols=18 Identities=11% Similarity=0.349 Sum_probs=16.6
Q ss_pred hhhheecccceeEeeecC
Q 032278 9 TFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~ 26 (144)
-||++.|||.++++|+++
T Consensus 589 rWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLP 606 (910)
T ss_pred cEEEEeecCCcEEEEecc
Confidence 499999999999999993
No 90
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=61.04 E-value=4.4 Score=38.65 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.1
Q ss_pred hhhheecccceeEeeecCCcc
Q 032278 9 TFLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~l 29 (144)
+.+||||+|-+|-||.+..|.
T Consensus 543 ~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred eEEEeccccceEEEEEccChh
Confidence 579999999999999996543
No 91
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=60.99 E-value=3.7 Score=38.11 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=15.7
Q ss_pred hhheecccceeEeeecCC
Q 032278 10 FLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~ 27 (144)
+|||||+|++|+.|-=+-
T Consensus 364 il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 364 ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eEeecCCCcceeeeccCC
Confidence 699999999999997633
No 92
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.64 E-value=3.9 Score=39.95 Aligned_cols=19 Identities=26% Similarity=0.662 Sum_probs=17.0
Q ss_pred hhhhhheecccceeEeeec
Q 032278 7 ALTFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 7 ~~~~LATGSmDKsV~IWql 25 (144)
-|.+++|||-|+||+||.-
T Consensus 238 ~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred CCcEEEEecCCccEEEecC
Confidence 4678999999999999976
No 93
>PF14046 NR_Repeat: Nuclear receptor repeat
Probab=60.63 E-value=4.5 Score=27.08 Aligned_cols=16 Identities=38% Similarity=0.918 Sum_probs=12.8
Q ss_pred CcccccCCCCCCcchh
Q 032278 107 GEQKVRRPWWAPSCLS 122 (144)
Q Consensus 107 ~~~~~~~~~w~p~~~s 122 (144)
-|-..+.|||.+||-+
T Consensus 27 Pe~~~gapwW~~scga 42 (46)
T PF14046_consen 27 PEARPGAPWWDCSCGA 42 (46)
T ss_pred CcCccCCcccCccccc
Confidence 4667788999999954
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=60.62 E-value=4.5 Score=37.73 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=17.2
Q ss_pred hhheecccceeEeeecCCc
Q 032278 10 FLVYGRKQKSVNIWFNDMP 28 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~ 28 (144)
++|+||.|++|++|++.+.
T Consensus 394 L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 394 LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eEEecCCCCceEEEEecCC
Confidence 6899999999999999664
No 95
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.51 E-value=4.3 Score=35.99 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=16.3
Q ss_pred hhheecccceeEeeecCC
Q 032278 10 FLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~ 27 (144)
.||||+.|++|++|+|.+
T Consensus 205 vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRN 222 (311)
T ss_pred EEEecCCCceEEEEehhh
Confidence 689999999999999954
No 96
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.38 E-value=4.7 Score=37.46 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=16.3
Q ss_pred hhhheecccceeEeeecC
Q 032278 9 TFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~ 26 (144)
-+|+|||.||+|++|.++
T Consensus 387 ~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFD 404 (463)
T ss_pred cceeeccccceEEEEeec
Confidence 478999999999999993
No 97
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=60.35 E-value=17 Score=33.07 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=37.6
Q ss_pred ccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccC
Q 032278 29 HALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGM 68 (144)
Q Consensus 29 l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~L 68 (144)
..+.+|+...|.-|+.....++|..-|..|++.|+-|.++
T Consensus 262 E~l~~~~k~q~~~~~~s~~kei~a~e~a~q~~~~y~L~q~ 301 (377)
T KOG1945|consen 262 ELLVTWKKQQVYHWLLSLNKEIYAQEFAAQEQAGYQLLQL 301 (377)
T ss_pred hhhhhhHHHHHHHHHHhhhHHHHHHHHHHhhcccchhhcc
Confidence 3578999999999999999999999999999999999888
No 98
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=59.64 E-value=4 Score=37.89 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.5
Q ss_pred hhhhhheecccceeEeeec
Q 032278 7 ALTFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 7 ~~~~LATGSmDKsV~IWql 25 (144)
.--+|||+|.|.+||||.-
T Consensus 399 ~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWST 417 (459)
T ss_pred CCeEEEEcccCcceeeecC
Confidence 3458999999999999976
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.60 E-value=4.8 Score=39.03 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=16.8
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
-|||||+.|+.|+||++-+
T Consensus 280 KyLAsaGeD~virVWkVie 298 (712)
T KOG0283|consen 280 KYLASAGEDGVIRVWKVIE 298 (712)
T ss_pred ceeeecCCCceEEEEEEec
Confidence 4899999999999999933
No 100
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=59.33 E-value=4.9 Score=36.98 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=21.4
Q ss_pred hhheecccceeEeeecCC-------------cccccCCCh
Q 032278 10 FLVYGRKQKSVNIWFNDM-------------PHALTLLSF 36 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~-------------~l~~~~WS~ 36 (144)
.|+.||.|+++++|+... +....+|+.
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~ 399 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE 399 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC
Confidence 589999999999999932 556667764
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=58.80 E-value=5.3 Score=36.61 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=17.0
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+|||||.|++|+||.+..
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred CEEEEEcCCCEEEEEECCC
Confidence 5799999999999999954
No 102
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=58.13 E-value=4.9 Score=35.82 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=17.8
Q ss_pred hhheecccceeEeeecCCcc
Q 032278 10 FLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l 29 (144)
.||||+.|+-|+||.+.+++
T Consensus 246 tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred eEEecCCCceEEEccCcchh
Confidence 48999999999999997755
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=57.92 E-value=4.7 Score=37.15 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.7
Q ss_pred hhheecccceeEeeecCC
Q 032278 10 FLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~ 27 (144)
=+|+||.|||++|+..+.
T Consensus 286 EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred hhccccccceEEEeecCC
Confidence 479999999999999844
No 104
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=57.73 E-value=6.3 Score=27.19 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=16.8
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+|++|+.|++|.||++..
T Consensus 64 ~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 64 TYLASGSSDKTIRLWDLET 82 (289)
T ss_pred CEEEEEcCCCeEEEEEcCc
Confidence 4789999999999999954
No 105
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=57.22 E-value=43 Score=25.12 Aligned_cols=48 Identities=6% Similarity=-0.008 Sum_probs=30.6
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhc-cCcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi-~Ltk~T~e~il~~i~r 82 (144)
..+|.+++..||+..| ..+.|..++-.-++|. .....|.++++.-|..
T Consensus 36 ~p~t~~eL~~~l~~~g---~~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~ 84 (126)
T TIGR01616 36 EPWHADTLRPYFGNKP---VGSWFNRAAPRVKSGEVNPDSIDEASALALMVS 84 (126)
T ss_pred CCcCHHHHHHHHHHcC---HHHHHhccchHhhhCCCCcccCCHHHHHHHHHh
Confidence 5699999999999987 4455555555444433 1123456777776543
No 106
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.13 E-value=5.8 Score=39.31 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.3
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
..++|||.|+||++|.+
T Consensus 467 ~g~vT~saDktVkfWdf 483 (888)
T KOG0306|consen 467 KGFVTGSADKTVKFWDF 483 (888)
T ss_pred CceEEecCCcEEEEEeE
Confidence 35789999999999988
No 107
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=57.06 E-value=5.2 Score=36.56 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.1
Q ss_pred hhhheecccceeEeeecCCcc
Q 032278 9 TFLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~l 29 (144)
-+||+|+.|++|++|++...-
T Consensus 310 ~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 310 EILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred ceeeccCCCccEEEEecCCCC
Confidence 589999999999999995543
No 108
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.29 E-value=5.6 Score=37.14 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=15.4
Q ss_pred hhheecccceeEeeecC
Q 032278 10 FLVYGRKQKSVNIWFND 26 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~ 26 (144)
+++|||+|.+|++|...
T Consensus 168 ivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTR 184 (487)
T ss_pred EEEecCCCceEEEEEec
Confidence 68999999999999983
No 109
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.76 E-value=5.8 Score=40.26 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=22.0
Q ss_pred hhhhheecccceeEeeecCCcccccCCChh
Q 032278 8 LTFLVYGRKQKSVNIWFNDMPHALTLLSFQ 37 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql~~~l~~~~WS~E 37 (144)
|-++++|+.||-|++|++.+.. +|.+|
T Consensus 218 lpliVSG~DDRqVKlWrmnetK---aWEvD 244 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNETK---AWEVD 244 (1202)
T ss_pred cceEEecCCcceeeEEEecccc---ceeeh
Confidence 5689999999999999997754 56554
No 110
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=54.84 E-value=26 Score=26.11 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=40.9
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhc-cCcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi-~Ltk~T~e~il~~i~r 82 (144)
...|.|+...||+..|.+ .++.|...+--=++|- .....|+++.+..|-.
T Consensus 36 ~~~s~~eL~~~l~~~g~~-~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~ 86 (117)
T COG1393 36 TPPSREELKKILSKLGDG-VEELINTRGTTYRELNLDKEDLSDEELIEALLE 86 (117)
T ss_pred CCCCHHHHHHHHHHcCcc-HHHHHHhccchHHHcCCcccccChHHHHHHHHh
Confidence 367899999999999998 9999999988888888 2236788888877754
No 111
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=53.79 E-value=8 Score=26.69 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=16.7
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+||+|+.|+++.||.+..
T Consensus 22 ~~l~~~~~~g~i~i~~~~~ 40 (289)
T cd00200 22 KLLATGSGDGTIKVWDLET 40 (289)
T ss_pred CEEEEeecCcEEEEEEeeC
Confidence 5789999999999999854
No 112
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=53.67 E-value=15 Score=25.91 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=30.7
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhc--cCcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLE--GMSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi--~Ltk~T~e~il~~i~r 82 (144)
..+|.++...|++..|.+ +.+.+..++-.=++|. .....|+++++..|..
T Consensus 31 ~p~s~~el~~~l~~~~~~-~~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~ 82 (110)
T PF03960_consen 31 EPLSREELRELLSKLGNG-PDDLINTRSKTYKELGKLKKDDLSDEELIELLLE 82 (110)
T ss_dssp S---HHHHHHHHHHHTSS-GGGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccc-HHHHhcCccchHhhhhhhhhhhhhhHHHHHHHHh
Confidence 448999999999999955 5555544443333332 3456678888888765
No 113
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=53.01 E-value=5.8 Score=37.89 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=24.9
Q ss_pred hhhheecccceeEeeecCCcccccCCChhHH
Q 032278 9 TFLVYGRKQKSVNIWFNDMPHALTLLSFQDV 39 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~l~~~~WS~EDV 39 (144)
+-+||.|-|||.+||..........|...+-
T Consensus 248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred ceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 3469999999999999988777777766544
No 114
>PTZ00420 coronin; Provisional
Probab=52.85 E-value=6.9 Score=36.24 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.0
Q ss_pred hhhhheecccceeEeeecCC
Q 032278 8 LTFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql~~ 27 (144)
-.+|||||.|++|+||++..
T Consensus 138 ~~iLaSgS~DgtIrIWDl~t 157 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIEN 157 (568)
T ss_pred CeEEEEEeCCCeEEEEECCC
Confidence 34679999999999999954
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=52.62 E-value=6.3 Score=35.48 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=22.6
Q ss_pred hhhheecccceeEeeecCC--------------cccccCCChh
Q 032278 9 TFLVYGRKQKSVNIWFNDM--------------PHALTLLSFQ 37 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~--------------~l~~~~WS~E 37 (144)
-++|.||-|.+|+||.+.. +.....|+.|
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd 83 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD 83 (347)
T ss_pred ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC
Confidence 4678999999999999943 5566677755
No 116
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=52.14 E-value=12 Score=26.09 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=17.5
Q ss_pred cccCCChhHHHHHHHhcCcc
Q 032278 30 ALTLLSFQDVGLWLEEINLG 49 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL~ 49 (144)
...+|+.+||-+++.+.|++
T Consensus 141 Pl~~w~~~di~~~~~~~~l~ 160 (173)
T cd01713 141 PLLDWTYEDVWAYLARHGLP 160 (173)
T ss_pred chhcCCHHHHHHHHHHcCCC
Confidence 44689999999999999975
No 117
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=51.78 E-value=7.3 Score=39.04 Aligned_cols=19 Identities=16% Similarity=0.454 Sum_probs=17.0
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.++||-|||||+++|.|+.
T Consensus 188 ~~i~s~SdDRsiRlW~i~s 206 (967)
T KOG0974|consen 188 RYIASVSDDRSIRLWPIDS 206 (967)
T ss_pred cEEEEEecCcceeeeeccc
Confidence 5899999999999999944
No 118
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=51.64 E-value=8.3 Score=35.37 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=14.2
Q ss_pred hhheecccceeEeeecC
Q 032278 10 FLVYGRKQKSVNIWFND 26 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~ 26 (144)
.+++||+|.+|++|+++
T Consensus 303 ~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 303 LLVSGSRDNTVKVWDVT 319 (537)
T ss_pred eEeeccCCceEEEEecc
Confidence 56778999999999985
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.31 E-value=9.6 Score=33.73 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=17.1
Q ss_pred hhhhheecccceeEeeecC
Q 032278 8 LTFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql~ 26 (144)
...+|++|+|++|-||..+
T Consensus 223 ~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ceeeEEecCCCcEEEEEec
Confidence 3579999999999999986
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.44 E-value=8.4 Score=34.90 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=17.4
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
++|+|.|.|+.++||+++.
T Consensus 264 ~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eEEEEeccCceEEEEEccc
Confidence 5899999999999999954
No 121
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=49.85 E-value=11 Score=27.58 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=28.7
Q ss_pred ccccCCChhHHHHHHHhc-CcchHH---HHhhHcCcChhhhccCccc
Q 032278 29 HALTLLSFQDVGLWLEEI-NLGGYR---QIFKENGVNGEYLEGMSMF 71 (144)
Q Consensus 29 l~~~~WS~EDVa~WLeei-GL~qYr---e~Fk~NnIdG~eLi~Ltk~ 71 (144)
.+-..||..+|.+||.-. +-.+|. --|-.=++||+.|=+|+++
T Consensus 8 ~~Pq~Wtk~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~e 54 (78)
T cd08537 8 EEPQFWTKTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCALD 54 (78)
T ss_pred CCcccccHHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCHH
Confidence 344789999999999643 111121 1244448899999999754
No 122
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=49.61 E-value=9.3 Score=35.22 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=17.5
Q ss_pred hhhhheecccceeEeeecCC
Q 032278 8 LTFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql~~ 27 (144)
-+.++|||||+++..|+++.
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cceEEEecCCceEEEEEecC
Confidence 35689999999999999955
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.53 E-value=9.1 Score=34.64 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=14.7
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
-+||+|-|.+|+||..
T Consensus 27 RmAtCSsDq~vkI~d~ 42 (361)
T KOG2445|consen 27 RMATCSSDQTVKIWDS 42 (361)
T ss_pred eeeeccCCCcEEEEec
Confidence 4799999999999997
No 124
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=48.72 E-value=8.6 Score=34.54 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=17.8
Q ss_pred hhhhheecccceeEeeecCC
Q 032278 8 LTFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql~~ 27 (144)
+.++.|||-|+|+++|++..
T Consensus 145 ~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 145 PQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred CeEEEecCCCceEEEEeecc
Confidence 56899999999999999953
No 125
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=48.07 E-value=10 Score=35.78 Aligned_cols=41 Identities=15% Similarity=0.024 Sum_probs=27.8
Q ss_pred hhhhheecccceeEeeecCC------------cccccCCChhHHHHHHHhcCc
Q 032278 8 LTFLVYGRKQKSVNIWFNDM------------PHALTLLSFQDVGLWLEEINL 48 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql~~------------~l~~~~WS~EDVa~WLeeiGL 48 (144)
-.+|||.|.|.|++||.+.. .+--+.||+.+=..|=...|+
T Consensus 371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~ 423 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNL 423 (524)
T ss_pred CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCc
Confidence 45899999999999999843 223346777665555444333
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=47.54 E-value=9.7 Score=34.70 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=15.3
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
.|||||-|..++.|+|
T Consensus 203 vLatgsaDg~irlWDi 218 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDI 218 (397)
T ss_pred EEEecCCCceEEEEEe
Confidence 5899999999999999
No 127
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=46.61 E-value=10 Score=35.27 Aligned_cols=17 Identities=12% Similarity=0.649 Sum_probs=15.9
Q ss_pred hhheecccceeEeeecC
Q 032278 10 FLVYGRKQKSVNIWFND 26 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~ 26 (144)
|++|+|.|||+++|.+.
T Consensus 332 yIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTS 348 (499)
T ss_pred eEEEecCCceEEEEecc
Confidence 89999999999999983
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=46.35 E-value=8.5 Score=37.64 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=16.2
Q ss_pred hhheecccceeEeeecCCcc
Q 032278 10 FLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l 29 (144)
.++|||-||++++|+-+..+
T Consensus 153 ~~vTgsaDKtIklWk~~~~l 172 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGGTLL 172 (745)
T ss_pred cEEeccCcceeeeccCCchh
Confidence 56899999999999985533
No 129
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=44.81 E-value=42 Score=24.83 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=39.1
Q ss_pred cchHHHHhhHcCcChhhhccCcccchHHHHHHHhHh---hhccchHHHHHHHHHHHHH
Q 032278 48 LGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC---HMKWGDFITLCKELRRIKV 102 (144)
Q Consensus 48 L~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~---~~k~gd~itl~~el~~~kv 102 (144)
++.|++.|++-++. -..+.+.+.+.+.+.+.|+.. ...=||...+.+-|+.-++
T Consensus 2 ~~~~~~~f~~~g~~-v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l 58 (154)
T PF03575_consen 2 VEKFRKAFRKLGFE-VDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGL 58 (154)
T ss_dssp HHHHHHHHHHCT-E-EEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTH
T ss_pred HHHHHHHHHHCCCE-EEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCH
Confidence 35789999999988 666777777788889999887 4555999988888776443
No 130
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=44.70 E-value=42 Score=23.93 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=35.8
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhcc-CcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEG-MSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~-Ltk~T~e~il~~i~r 82 (144)
..+|.+++..|++..|.+ ..+.|..++-.=++|.- ....|++++++.|..
T Consensus 35 ~~~~~~el~~~~~~~~~~-~~~l~n~~~~~~k~l~~~~~~ls~~e~i~~l~~ 85 (115)
T cd03032 35 QPLTKEELKEILSLTENG-VEDIISTRSKAFKNLNIDIDELSLSELIRLISE 85 (115)
T ss_pred CcchHHHHHHHHHHhcCC-HHHHHhcCcHHHHHcCCCcccCCHHHHHHHHHh
Confidence 578999999999999764 78788777666665431 124567888776654
No 131
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=44.47 E-value=8.9 Score=38.06 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=24.6
Q ss_pred hhhhhheecccceeEeeecCC------------cccccCCChh
Q 032278 7 ALTFLVYGRKQKSVNIWFNDM------------PHALTLLSFQ 37 (144)
Q Consensus 7 ~~~~LATGSmDKsV~IWql~~------------~l~~~~WS~E 37 (144)
|--.||+.|+|-|+++|++.. .+.-++||++
T Consensus 689 AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 689 AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence 445799999999999999943 4555788875
No 132
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.37 E-value=11 Score=33.44 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.1
Q ss_pred hhhhhhheecccceeEeeec
Q 032278 6 DALTFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 6 ~~~~~LATGSmDKsV~IWql 25 (144)
+--+.+|.||||.+++.|+-
T Consensus 111 eesSVv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDC 130 (307)
T ss_pred CcceEEEeccccceeEEEEc
Confidence 34467899999999999987
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.31 E-value=8.8 Score=37.88 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=16.8
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+||+|+.|+++++|+|..
T Consensus 83 ~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhcccccCCceeeeehhh
Confidence 4789999999999999944
No 134
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=44.04 E-value=13 Score=26.14 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=17.8
Q ss_pred cccccCCChhHHHHHHHhcCc
Q 032278 28 PHALTLLSFQDVGLWLEEINL 48 (144)
Q Consensus 28 ~l~~~~WS~EDVa~WLeeiGL 48 (144)
.++..+|+.|++.+.|.+.||
T Consensus 57 ~i~i~~w~~d~i~efL~~kgf 77 (78)
T PF08806_consen 57 RINIEKWKTDEIEEFLNEKGF 77 (78)
T ss_dssp EEE-SSSSHCHHHHHHHHHT-
T ss_pred EEEcccCCHHHHHHHHHHhCC
Confidence 678899999999999999987
No 135
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=43.81 E-value=44 Score=23.92 Aligned_cols=48 Identities=10% Similarity=0.323 Sum_probs=33.8
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhcc--CcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEG--MSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~--Ltk~T~e~il~~i~r 82 (144)
..+|.++...||++.| +.+.|..++-.=++|-- ....|++++++.|..
T Consensus 34 ~p~s~~eL~~~l~~~g---~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~ 83 (105)
T cd03035 34 DGLDAATLERWLAKVG---WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLE 83 (105)
T ss_pred CCCCHHHHHHHHHHhC---hHHHHccCchHHHhCChhhhccCCHHHHHHHHHh
Confidence 5789999999999988 58888777655554321 123567888777654
No 136
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=43.76 E-value=12 Score=34.64 Aligned_cols=18 Identities=17% Similarity=0.545 Sum_probs=16.2
Q ss_pred hhhheecccceeEeeecC
Q 032278 9 TFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~ 26 (144)
-.|||||-|+-++||++.
T Consensus 276 EMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIE 293 (508)
T ss_pred HHhhccCcCCcEEEEEEe
Confidence 368999999999999994
No 137
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=43.62 E-value=11 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=18.7
Q ss_pred CCChhHHHHHHHhcCcchHHHH
Q 032278 33 LLSFQDVGLWLEEINLGGYRQI 54 (144)
Q Consensus 33 ~WS~EDVa~WLeeiGL~qYre~ 54 (144)
.-|.++|++||+..+=++|++|
T Consensus 29 ~vs~~el~a~lrke~~~~y~~c 50 (68)
T PF07308_consen 29 EVSKAELSAWLRKEDEKGYKEC 50 (68)
T ss_pred ccCHHHHHHHHCCCCCcccccc
Confidence 4588999999999988888765
No 138
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=43.14 E-value=12 Score=37.40 Aligned_cols=17 Identities=6% Similarity=0.530 Sum_probs=15.8
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
-||||-|.|||++||+.
T Consensus 184 ky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 184 KYFASQSDDRTLKVWRT 200 (942)
T ss_pred CeeeeecCCceEEEEEc
Confidence 58999999999999996
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=43.08 E-value=14 Score=34.59 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=15.6
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
..|.|||+|..|.+|++
T Consensus 136 s~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 136 SHIITGSKDGAVLVWLL 152 (476)
T ss_pred cEEEecCCCccEEEEEE
Confidence 46889999999999999
No 140
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=42.78 E-value=64 Score=23.10 Aligned_cols=50 Identities=10% Similarity=0.164 Sum_probs=33.8
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhc-cCcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi-~Ltk~T~e~il~~i~r 82 (144)
..+|.+++..||+..|. +..+.|..+.-.=++|. .....|.++++..|..
T Consensus 34 ~~~t~~el~~~l~~~~~-~~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~ 84 (112)
T cd03034 34 TPPTAAELRELLAKLGI-SPRDLLRTKEAPYKELGLADPELSDEELIDAMAA 84 (112)
T ss_pred CCcCHHHHHHHHHHcCC-CHHHHHhcCCchHHHcCCCccCCCHHHHHHHHHh
Confidence 57899999999999994 36677766654444431 1124567888777654
No 141
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=42.68 E-value=18 Score=25.80 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=14.3
Q ss_pred cccCCChhHHHHHHHhcCcc
Q 032278 30 ALTLLSFQDVGLWLEEINLG 49 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL~ 49 (144)
...+||.+||-+.|...|++
T Consensus 135 Pi~~wt~~dV~~yi~~~~l~ 154 (174)
T PF01507_consen 135 PIADWTEEDVWDYIKANGLP 154 (174)
T ss_dssp TTTT--HHHHHHHHHHHT--
T ss_pred ehhhCCHHHHHHHHHHhcCC
Confidence 44799999999999999986
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.59 E-value=16 Score=33.08 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=25.4
Q ss_pred hhheecccceeEeeecCCcccccCCChh
Q 032278 10 FLVYGRKQKSVNIWFNDMPHALTLLSFQ 37 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l~~~~WS~E 37 (144)
.||+.|.|++|+|+..+++.+...|+..
T Consensus 128 klA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 128 KLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred EEEEeccCcEEEEEecCCccccccchhh
Confidence 5899999999999999999999999864
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=42.22 E-value=13 Score=33.94 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=17.1
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
-++|.++||-|+++|+|+.
T Consensus 194 d~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 194 DRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred CeeeccCCcceEEEEecCh
Confidence 3789999999999999974
No 144
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=41.62 E-value=14 Score=33.00 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=15.8
Q ss_pred hhheecccceeEeeecCC
Q 032278 10 FLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~ 27 (144)
.+|.||-||||+.|++.-
T Consensus 196 m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 196 MFASGSQDKTIRFWDLRV 213 (350)
T ss_pred EEEccCCCceEEEEeeec
Confidence 479999999999999943
No 145
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=41.00 E-value=11 Score=30.36 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=43.8
Q ss_pred hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHHH
Q 032278 45 EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKV 102 (144)
Q Consensus 45 eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~kv 102 (144)
..|++.|.+.+.+.+++|--+.-|.-+..+++++.++...++.|=+++--+...+|+-
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~ 147 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKK 147 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH
Confidence 4577889999999999999998887665566777888888888877765554444443
No 146
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=40.83 E-value=15 Score=35.82 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=17.4
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
.+||+|+-|+.|+||+++.
T Consensus 590 r~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred ceEeecccCCcEEEEEcCC
Confidence 4899999999999999966
No 147
>PHA03074 late transcription factor VLTF-3; Provisional
Probab=40.80 E-value=43 Score=28.75 Aligned_cols=56 Identities=27% Similarity=0.438 Sum_probs=37.4
Q ss_pred CChhHHHHHHHhc---CcchHHHHhhH-cCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHH
Q 032278 34 LSFQDVGLWLEEI---NLGGYRQIFKE-NGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKEL 97 (144)
Q Consensus 34 WS~EDVa~WLeei---GL~qYre~Fk~-NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el 97 (144)
=+.-=|++.|.+. |-..|+..|+= |.+.-+.|- | |+|.|-+-+- =|-|+|.||.|-
T Consensus 86 idan~vs~fLK~~~~inkKdYklvfeiiN~~~~e~ln-L---ttekInei~e----IFk~lvfF~qen 145 (225)
T PHA03074 86 VDANFVSSFLKAKERINKKDYKLVFEIINQVKDEKLN-L---TTEKINEVVE----IFKHLVFFCQEN 145 (225)
T ss_pred hhHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhccc-c---cHHHHHHHHH----HHHHHHHHHhcc
Confidence 3444578999888 99999999974 555544443 4 5666433333 367888888773
No 148
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.77 E-value=16 Score=34.38 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.6
Q ss_pred hhheecccceeEeeecCCccc
Q 032278 10 FLVYGRKQKSVNIWFNDMPHA 30 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l~ 30 (144)
+|+||++|..|+||.+-++-+
T Consensus 361 ifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred EEeccCCCceEEEEEcCCccc
Confidence 689999999999999955433
No 149
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=40.15 E-value=34 Score=24.06 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=23.2
Q ss_pred cchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhh
Q 032278 48 LGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCH 84 (144)
Q Consensus 48 L~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~ 84 (144)
+++..+.-++|+|| +-.+.+...+.+++.+.+.+|.
T Consensus 130 ~~~l~~~~~~~~id-~v~ial~~~~~~~i~~ii~~~~ 165 (175)
T PF13727_consen 130 LDDLPELVREHDID-EVIIALPWSEEEQIKRIIEELE 165 (175)
T ss_dssp GGGHHHHHHHHT---EEEE--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-EEEEEcCccCHHHHHHHHHHHH
Confidence 56667777778888 6677788888888888887773
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=40.07 E-value=16 Score=33.64 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=16.5
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
-.|||.|.||+++||.+..
T Consensus 99 K~lat~~~Dr~Ir~w~~~D 117 (420)
T KOG2096|consen 99 KKLATISGDRSIRLWDVRD 117 (420)
T ss_pred ceeEEEeCCceEEEEecch
Confidence 3689999999999998854
No 151
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=39.99 E-value=16 Score=33.57 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=18.3
Q ss_pred hhhhhheecccceeEeeecCC
Q 032278 7 ALTFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 7 ~~~~LATGSmDKsV~IWql~~ 27 (144)
++-+.|+||+|+++-||++..
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~ 317 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAA 317 (399)
T ss_pred ccchhhcccccceEEEEeccc
Confidence 567899999999999999944
No 152
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.73 E-value=65 Score=28.37 Aligned_cols=52 Identities=8% Similarity=0.162 Sum_probs=40.1
Q ss_pred cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHh-hhccchHHHHHHHHHH
Q 032278 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-HMKWGDFITLCKELRR 99 (144)
Q Consensus 28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~-~~k~gd~itl~~el~~ 99 (144)
+.+....+.++..+|+++.|.+.|| ..||.++|.+- ...|.+.-.|=+++|.
T Consensus 4 ~~~l~~l~~~el~~~~~~~g~~~fr--------------------a~Qi~~wi~~~~~~~~~~mt~l~~~~r~ 56 (345)
T PRK14466 4 KYPLLGMTLEELQSVAKRLGMPAFA--------------------AKQIASWLYDKKVTSIDEMTNISLAHRE 56 (345)
T ss_pred CcCcccCCHHHHHHHHHHcCCCchH--------------------HHHHHHHHHhcCCCCHHHHhhhhHHHHH
Confidence 3456789999999999999998887 46888887764 3557777777777765
No 153
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=39.01 E-value=48 Score=25.71 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=30.7
Q ss_pred ChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHh---hhccc-----hHHHHHHHH
Q 032278 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC---HMKWG-----DFITLCKEL 97 (144)
Q Consensus 35 S~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~---~~k~g-----d~itl~~el 97 (144)
-..++.++|.+.|+ ..+.|.-+.|.+.|.=.--.|++||-++ ..++| |++.++|+|
T Consensus 41 ~~~~I~~fL~~~~~-------~~~~is~k~l~~Pt~kdf~~I~~fL~~~idp~~~~~~k~eeev~~~lK~L 104 (157)
T PF03801_consen 41 CIRKIYEFLSEHGF-------ESHPISPKTLKSPTQKDFVEIFNFLFRQIDPNFKFGKKFEEEVPFLLKAL 104 (157)
T ss_dssp HHHHHHHHHHHTT---------SS---TTTTSS--HHHHHHHHHHHHHTTSTT---SSTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-------CCccccccccCCCCHHHHHHHHHHHHHHhCCCCCcCcCHHHHHHHHHHHh
Confidence 45789999999998 2556666666666555555567887776 24455 555555554
No 154
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=38.33 E-value=14 Score=30.48 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=43.3
Q ss_pred hcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHHHH
Q 032278 45 EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 101 (144)
Q Consensus 45 eiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~~k 101 (144)
..|++.|.+.+++.++||--+.-|.-+..+++++.++...++.+=+++-.+...+|+
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~ 157 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLK 157 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHH
Confidence 457889999999999999998888776667777778887777776665555444443
No 155
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=38.31 E-value=18 Score=31.60 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=22.9
Q ss_pred hhhhhheecccceeEeeecCCccc--------ccCCChhHHHHHHHhcCcchHHHHh
Q 032278 7 ALTFLVYGRKQKSVNIWFNDMPHA--------LTLLSFQDVGLWLEEINLGGYRQIF 55 (144)
Q Consensus 7 ~~~~LATGSmDKsV~IWql~~~l~--------~~~WS~EDVa~WLeeiGL~qYre~F 55 (144)
.-++|+|-|-|++++||.+....- -..|.+.+...++...........+
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLLSNASWLPTDPSSYLPVPSQDSLIRVI 285 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT----------------TSSS--SS--
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccccccccccccccccccCcchhcchheE
Confidence 457889999999999999966443 5668888888888776654444444
No 156
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=38.20 E-value=59 Score=23.80 Aligned_cols=60 Identities=22% Similarity=0.399 Sum_probs=42.4
Q ss_pred HhcCcchHHHHhhHcCcChhhhccCc----ccchHHHHHHHhHhhhccc---hHHHHHHHHHHHHHH
Q 032278 44 EEINLGGYRQIFKENGVNGEYLEGMS----MFTTEQILRFIRRCHMKWG---DFITLCKELRRIKVA 103 (144)
Q Consensus 44 eeiGL~qYre~Fk~NnIdG~eLi~Lt----k~T~e~il~~i~r~~~k~g---d~itl~~el~~~kv~ 103 (144)
+++|..+.+++++.++++-..+.... ..+.||..+-++..+++-| .+-+|++-||.++..
T Consensus 16 ~~~~~~~wK~faR~lglse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~l~ 82 (97)
T cd08316 16 DVMTLKDVKKFVRKSGLSEPKIDEIKLDNPQDTAEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAKLC 82 (97)
T ss_pred HHcCHHHHHHHHHHcCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHHhCCCchHHHHHHHHHHccch
Confidence 45677788888777776666555544 3357999888888877655 667788888877643
No 157
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=38.17 E-value=16 Score=28.31 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=17.7
Q ss_pred cccchHHHHHHHhHhhhccchHHHH
Q 032278 69 SMFTTEQILRFIRRCHMKWGDFITL 93 (144)
Q Consensus 69 tk~T~e~il~~i~r~~~k~gd~itl 93 (144)
...|++||+.|+.. .|||||.+
T Consensus 72 ~G~Sd~eI~~~~v~---RYG~~Vly 93 (126)
T TIGR03147 72 EGKSNQQIIDFMTA---RFGDFVLY 93 (126)
T ss_pred cCCCHHHHHHHHHH---hcCCeEEe
Confidence 35689999999876 89999854
No 158
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=37.61 E-value=23 Score=23.95 Aligned_cols=14 Identities=29% Similarity=0.722 Sum_probs=11.7
Q ss_pred cCCChhHHHHHHHh
Q 032278 32 TLLSFQDVGLWLEE 45 (144)
Q Consensus 32 ~~WS~EDVa~WLee 45 (144)
.--|+||++.|+++
T Consensus 16 ~L~t~eeI~~W~eE 29 (56)
T PF10453_consen 16 KLQTPEEIAKWIEE 29 (56)
T ss_pred ecCCHHHHHHHHHH
Confidence 33599999999987
No 159
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=37.59 E-value=9.9 Score=34.60 Aligned_cols=40 Identities=15% Similarity=-0.030 Sum_probs=35.0
Q ss_pred ccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCc
Q 032278 29 HALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMS 69 (144)
Q Consensus 29 l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Lt 69 (144)
.....|++|||+.|+++-++ -|+..|-.|++-|-.+..++
T Consensus 144 ~r~g~~sved~~~s~~~k~l-p~vp~s~~~es~g~S~~~~n 183 (377)
T KOG1945|consen 144 HRDGRWSVEDVEVSVDSKSL-PGVPFSWFAESLGGSSSRVN 183 (377)
T ss_pred cccccccccccccccccCCC-CCcchhhhhcccccchhccC
Confidence 34588999999999999999 89999999999998777654
No 160
>PRK10026 arsenate reductase; Provisional
Probab=37.44 E-value=1.5e+02 Score=22.98 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=33.7
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhcc-CcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEG-MSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~-Ltk~T~e~il~~i~r 82 (144)
..+|.+++..||...|+ +-.+.|..++-.=++|.- ....|.++++..|..
T Consensus 37 ~ppt~~eL~~~l~~~g~-~~~~lint~~~~yr~L~~~~~~ls~~e~l~ll~~ 87 (141)
T PRK10026 37 TPPTRDELVKLIADMGI-SVRALLRKNVEPYEELGLAEDKFTDDQLIDFMLQ 87 (141)
T ss_pred CCcCHHHHHHHHHhCCC-CHHHHHHcCCchHHHcCCCccCCCHHHHHHHHHh
Confidence 56999999999999997 356666655544444321 123567888877654
No 161
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=37.37 E-value=16 Score=32.56 Aligned_cols=16 Identities=25% Similarity=0.723 Sum_probs=15.0
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
-++|||-|||+++|..
T Consensus 119 qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeecCCCcceeeeeee
Confidence 5899999999999998
No 162
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=37.27 E-value=17 Score=28.22 Aligned_cols=22 Identities=18% Similarity=0.526 Sum_probs=17.6
Q ss_pred cccchHHHHHHHhHhhhccchHHHH
Q 032278 69 SMFTTEQILRFIRRCHMKWGDFITL 93 (144)
Q Consensus 69 tk~T~e~il~~i~r~~~k~gd~itl 93 (144)
...|++||+.|+.. .|||||.+
T Consensus 72 ~G~sd~eI~~~~v~---RYG~~Vl~ 93 (126)
T PRK10144 72 EGKSEVEIIGWMTE---RYGDFVRY 93 (126)
T ss_pred cCCCHHHHHHHHHH---hcCCeEEe
Confidence 35689999999876 89999853
No 163
>PF12728 HTH_17: Helix-turn-helix domain
Probab=36.84 E-value=53 Score=19.90 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=10.1
Q ss_pred cccchHHHHHHHhH
Q 032278 69 SMFTTEQILRFIRR 82 (144)
Q Consensus 69 tk~T~e~il~~i~r 82 (144)
..++.+++.+|+.+
T Consensus 36 ~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 36 WRIPKSDLDRWLER 49 (51)
T ss_pred EEEeHHHHHHHHHh
Confidence 56677788888765
No 164
>PRK12559 transcriptional regulator Spx; Provisional
Probab=36.75 E-value=69 Score=23.93 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=32.4
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhc-cCcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi-~Ltk~T~e~il~~i~r 82 (144)
..+|.+++..||+..|++ ..+.|..++-.=++|. .....|+++++..|..
T Consensus 35 ~~~s~~el~~~l~~~~~g-~~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~ 85 (131)
T PRK12559 35 NSMTVDELKSILRLTEEG-ATEIISTRSKTFQDLNINIEELSLNEFYKLIIE 85 (131)
T ss_pred CcCCHHHHHHHHHHcCCC-HHHHHhcCcHHHHhCCCCcccCCHHHHHHHHHh
Confidence 579999999999997766 5566655444433331 1123467888777654
No 165
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=36.69 E-value=20 Score=33.50 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=13.1
Q ss_pred hhheecccceeEeeecC
Q 032278 10 FLVYGRKQKSVNIWFND 26 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~ 26 (144)
.+++||.|-||+||+.+
T Consensus 249 viisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVN 265 (499)
T ss_pred EEEecCCCceEEEEecc
Confidence 56788888888888773
No 166
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=36.38 E-value=16 Score=32.91 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=16.6
Q ss_pred hhhheecccceeEeeecC
Q 032278 9 TFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~ 26 (144)
+++||||+|-++++|+..
T Consensus 224 ~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 224 TYIATGSYDECIRVLDTR 241 (339)
T ss_pred ceEEEeccccceeeeehh
Confidence 689999999999999984
No 167
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.04 E-value=47 Score=28.74 Aligned_cols=47 Identities=11% Similarity=-0.075 Sum_probs=32.2
Q ss_pred CCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhhhccchHHHHHHHHHH
Q 032278 33 LLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRR 99 (144)
Q Consensus 33 ~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~itl~~el~~ 99 (144)
+.+.+++.+|+++.|++.||. .||.++|.+-+..|.+.-.|=+++|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~r~--------------------~qi~~~~~~~~~~~~~m~~l~~~~r~ 49 (336)
T PRK14470 3 HLSGQDSRALARPAGISLEDA--------------------RRITGAVIGRGAPLRSARNVRRSVLD 49 (336)
T ss_pred CCCHHHHHHHHHHcCCCcHHH--------------------HHHHHHHHhCCCCHHHhccCCHHHHH
Confidence 568899999999999998884 46666665544445555555555543
No 168
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=35.43 E-value=18 Score=33.21 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=14.4
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
+-+|||+|+.++||+=
T Consensus 275 lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDG 290 (430)
T ss_pred EEEEeccCCcEEeecc
Confidence 5689999999999985
No 169
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.18 E-value=17 Score=33.39 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=34.2
Q ss_pred hhhhheecccceeEeeecCC------------cccccCCChhHHHHHHHhcCcchHHHHhhHcCc--ChhhhccCcc
Q 032278 8 LTFLVYGRKQKSVNIWFNDM------------PHALTLLSFQDVGLWLEEINLGGYRQIFKENGV--NGEYLEGMSM 70 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql~~------------~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnI--dG~eLi~Ltk 70 (144)
-|++|++|+|-+|++|-.+. +.-|..|-+|. .|-++|.+-.= .|..|-+.+.
T Consensus 247 Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~-----------~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 247 GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPES-----------SYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccc-----------cCcchhhccCCCCCccEEEeecc
Confidence 47899999999999999855 45566676543 36666654331 4445555443
No 170
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.15 E-value=21 Score=35.46 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=16.3
Q ss_pred hhheecccceeEeeecCC
Q 032278 10 FLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~ 27 (144)
+|.+||-|.+||+|++..
T Consensus 148 iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRS 165 (839)
T ss_pred EEEecCCCceEEEEeeec
Confidence 689999999999999954
No 171
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=34.82 E-value=42 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=21.1
Q ss_pred ccchHHHHHHHhHhhhccchHHHHHH
Q 032278 70 MFTTEQILRFIRRCHMKWGDFITLCK 95 (144)
Q Consensus 70 k~T~e~il~~i~r~~~k~gd~itl~~ 95 (144)
.++.++=+..+++|..++||||.-|.
T Consensus 38 ~l~~~e~a~~lk~~L~~IG~~I~~~l 63 (100)
T PF13907_consen 38 GLPRKERAKILKKELLKIGDFIDSIL 63 (100)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778999999999999997664
No 172
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=34.78 E-value=18 Score=24.33 Aligned_cols=10 Identities=50% Similarity=1.013 Sum_probs=8.9
Q ss_pred HHHHHhcCcc
Q 032278 40 GLWLEEINLG 49 (144)
Q Consensus 40 a~WLeeiGL~ 49 (144)
+.||++.||.
T Consensus 30 G~WL~~aGF~ 39 (57)
T PF08845_consen 30 GKWLEEAGFT 39 (57)
T ss_pred hhhhHHhCCC
Confidence 7899999994
No 173
>PRK07116 flavodoxin; Provisional
Probab=34.75 E-value=28 Score=25.94 Aligned_cols=14 Identities=21% Similarity=0.729 Sum_probs=11.9
Q ss_pred ChhHHHHHHHhcCc
Q 032278 35 SFQDVGLWLEEINL 48 (144)
Q Consensus 35 S~EDVa~WLeeiGL 48 (144)
+.++|.+||+++||
T Consensus 147 ~~~~i~~wl~~~~~ 160 (160)
T PRK07116 147 SKEEIKEWINKLDL 160 (160)
T ss_pred cHHHHHHHHHHcCC
Confidence 35689999999997
No 174
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=34.74 E-value=20 Score=32.29 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=16.5
Q ss_pred hhhhheecccceeEeeec
Q 032278 8 LTFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql 25 (144)
=++||||++|+.|-+|+.
T Consensus 59 gs~~aSgG~Dr~I~LWnv 76 (338)
T KOG0265|consen 59 GSCFASGGSDRAIVLWNV 76 (338)
T ss_pred CCeEeecCCcceEEEEec
Confidence 478999999999999996
No 175
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.97 E-value=20 Score=31.98 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.9
Q ss_pred hhhhheecccceeEeeecC
Q 032278 8 LTFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql~ 26 (144)
-.+||++|+|=||+||+..
T Consensus 247 ~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 247 ASLLASASYDMTVRIWDPE 265 (311)
T ss_pred hhHhhhccccceEEecccc
Confidence 3579999999999999984
No 176
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=33.62 E-value=22 Score=31.57 Aligned_cols=22 Identities=14% Similarity=0.530 Sum_probs=17.7
Q ss_pred hhheecccceeEeeecCCcccc
Q 032278 10 FLVYGRKQKSVNIWFNDMPHAL 31 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l~~ 31 (144)
++.+||.|++++||++.....+
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEe
Confidence 6789999999999999554433
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=32.70 E-value=25 Score=32.20 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=16.5
Q ss_pred hhhhheecccceeEeeec
Q 032278 8 LTFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql 25 (144)
.-+|.+||.|-||++|.|
T Consensus 148 ~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 148 PQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CcEEEEecCCceEEEEec
Confidence 458999999999999999
No 178
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=32.66 E-value=60 Score=23.11 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=38.5
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhcc---CcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEG---MSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~---Ltk~T~e~il~~i~r 82 (144)
...|.+++..|++..|. ++.+.|..+.-.=++|.. +...|.++++..|..
T Consensus 34 ~~~~~~el~~l~~~~~~-~~~~lin~~~~~~k~l~~~~~~~~ls~~e~~~~i~~ 86 (117)
T TIGR01617 34 DGPTREELLDILSLLED-GIDPLLNTRGQSYRALNTSNTFLDLSDKEALELLAE 86 (117)
T ss_pred ChhhHHHHHHHHHHcCC-CHHHheeCCCcchhhCCchhhcccCCHHHHHHHHHh
Confidence 34789999999999996 788888887777666542 456788888887765
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.64 E-value=24 Score=36.65 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=22.1
Q ss_pred hhhheecccceeEeeecCC-----cccccCCCh
Q 032278 9 TFLVYGRKQKSVNIWFNDM-----PHALTLLSF 36 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~-----~l~~~~WS~ 36 (144)
.+|-|||-|++|+||+-.. +..+..|+.
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~ 1156 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSS 1156 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeecc
Confidence 4678999999999999833 457777764
No 180
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=32.55 E-value=19 Score=35.36 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=15.2
Q ss_pred hheecccceeEeeecCC
Q 032278 11 LVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 11 LATGSmDKsV~IWql~~ 27 (144)
+.+||-|+|++||+++.
T Consensus 115 ~iSgSWD~TakvW~~~~ 131 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGE 131 (745)
T ss_pred eEecccccceEEecchh
Confidence 78999999999999944
No 181
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.13 E-value=27 Score=34.54 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=15.5
Q ss_pred hhheecccceeEeeecCC
Q 032278 10 FLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~ 27 (144)
-++.+|.||||++|.+.+
T Consensus 749 SFiSASkDKTVKLWSik~ 766 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKP 766 (1034)
T ss_pred ceeeccCCceEEEEEecc
Confidence 467899999999999954
No 182
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=31.65 E-value=42 Score=23.05 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.7
Q ss_pred ChhHHHHHHHhcCcchHHHHhhHcCcChhhhccC
Q 032278 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGM 68 (144)
Q Consensus 35 S~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~L 68 (144)
+.++-...|..++=..|..+|++ +|++.-|..+
T Consensus 20 ~~~~~~~yL~~i~p~~l~~if~~-~l~~~~L~~i 52 (94)
T PF13877_consen 20 DPEERYEYLKSIPPDSLPKIFKN-SLEPEFLSEI 52 (94)
T ss_pred CHHHHHHHHHhCChHHHHHHHHc-cCCHHHHHHH
Confidence 56788999999999999999998 8887766543
No 183
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=31.62 E-value=24 Score=32.22 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=14.5
Q ss_pred hheecccceeEeeec
Q 032278 11 LVYGRKQKSVNIWFN 25 (144)
Q Consensus 11 LATGSmDKsV~IWql 25 (144)
|+.||.|++|++|.+
T Consensus 208 LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDI 222 (390)
T ss_pred eeecCCCCcEEEEec
Confidence 799999999999999
No 184
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=31.46 E-value=25 Score=25.82 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.2
Q ss_pred cccCCChhHHHHHHHhcCcc
Q 032278 30 ALTLLSFQDVGLWLEEINLG 49 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL~ 49 (144)
.+.+|+.+||-++.++.|++
T Consensus 143 Pl~~~~k~eI~~~~~~~~l~ 162 (185)
T cd01992 143 PLLGITRAEIEAYLRENGLP 162 (185)
T ss_pred CCCCCCHHHHHHHHHHcCCC
Confidence 55789999999999999997
No 185
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=30.66 E-value=32 Score=21.98 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=17.2
Q ss_pred hhhheecccceeEeeecCCc
Q 032278 9 TFLVYGRKQKSVNIWFNDMP 28 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~ 28 (144)
-+||.|+.|+.|-|+|++-.
T Consensus 24 dLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 24 DLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CEEEEEECCCeEEEEECCCc
Confidence 47999999999999998543
No 186
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=30.35 E-value=23 Score=32.55 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=23.3
Q ss_pred hhhheecccceeEeeecCC------------cccccCCChh
Q 032278 9 TFLVYGRKQKSVNIWFNDM------------PHALTLLSFQ 37 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~------------~l~~~~WS~E 37 (144)
++||.|+.|+.|-||++.- +..+..||.+
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d 76 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD 76 (405)
T ss_pred ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC
Confidence 5899999999999999932 5566778763
No 187
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.29 E-value=17 Score=33.66 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=15.3
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
.+++|||.|.|-+||+-
T Consensus 203 ~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKA 219 (481)
T ss_pred ceEEEccCCcchHHHHH
Confidence 47899999999999994
No 188
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=29.89 E-value=48 Score=20.71 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.8
Q ss_pred cccCCChhHHHHHHHhcCc
Q 032278 30 ALTLLSFQDVGLWLEEINL 48 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL 48 (144)
++..++.+|+...|++.||
T Consensus 5 d~~g~~~~~a~~~l~~~g~ 23 (63)
T PF03793_consen 5 DLVGMTYDEAKSILEAAGL 23 (63)
T ss_dssp TTTTSBHHHHHHHHHHTT-
T ss_pred CcCCCcHHHHHHHHHHCCC
Confidence 6788999999999999999
No 189
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=29.89 E-value=28 Score=31.07 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=17.0
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
+.||.||-||+|.||.++.
T Consensus 33 ~~lasgs~dktv~v~n~e~ 51 (313)
T KOG1407|consen 33 TKLASGSFDKTVSVWNLER 51 (313)
T ss_pred ceeeecccCCceEEEEecc
Confidence 5799999999999999854
No 190
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.83 E-value=27 Score=31.76 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=16.0
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
.|+|+||.|-+++|+++
T Consensus 54 ~~~aSGssDetI~IYDm 70 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDM 70 (362)
T ss_pred eeEeccCCCCcEEEEec
Confidence 48999999999999999
No 191
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.76 E-value=26 Score=34.81 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=16.4
Q ss_pred hhhheecccceeEeeecC
Q 032278 9 TFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~ 26 (144)
.+||+||-|++|+.|.+.
T Consensus 209 ~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred hhhccCCCCceeeeeccc
Confidence 478999999999999994
No 192
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=29.73 E-value=28 Score=31.03 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=14.1
Q ss_pred hheecccceeEeeecC
Q 032278 11 LVYGRKQKSVNIWFND 26 (144)
Q Consensus 11 LATGSmDKsV~IWql~ 26 (144)
+..||.||||+.|++.
T Consensus 115 FlS~S~D~tvrLWDlR 130 (311)
T KOG1446|consen 115 FLSSSLDKTVRLWDLR 130 (311)
T ss_pred EEecccCCeEEeeEec
Confidence 4689999999999993
No 193
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=29.34 E-value=27 Score=32.23 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=16.8
Q ss_pred hhhhheecccceeEeeec
Q 032278 8 LTFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql 25 (144)
-|.||+.+-|+.|+||++
T Consensus 329 etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDL 346 (422)
T ss_pred CceeEecccCCcEEEEec
Confidence 478999999999999999
No 194
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=29.21 E-value=88 Score=27.13 Aligned_cols=52 Identities=25% Similarity=0.493 Sum_probs=35.6
Q ss_pred cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhh-hccchHHHHHHHHHH
Q 032278 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCH-MKWGDFITLCKELRR 99 (144)
Q Consensus 28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~-~k~gd~itl~~el~~ 99 (144)
+.+...-+.++..+|+.++|++.||. .||.++|.+-+ ..|-+.=.|=+++|.
T Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~r~--------------------~qi~~~~~~~~~~~~~~m~~l~~~~r~ 58 (355)
T TIGR00048 6 KPSLYDLTLQELRQWLKDLGEKPFRA--------------------KQIYKWLYHKGKDSFDDMTNLSKDLRE 58 (355)
T ss_pred CCCcccCCHHHHHHHHHHcCCCchhH--------------------HHHHHHHHHcCCCCHHHccccCHHHHH
Confidence 34567789999999999999998874 46766666543 335555455555553
No 195
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=29.12 E-value=1.1e+02 Score=25.94 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=42.7
Q ss_pred CChhHHHHHHHhcCcchHHHH-hhHcCcChhhhccC--cccchHHHHHHHhHh---------hhccc------hHHHHHH
Q 032278 34 LSFQDVGLWLEEINLGGYRQI-FKENGVNGEYLEGM--SMFTTEQILRFIRRC---------HMKWG------DFITLCK 95 (144)
Q Consensus 34 WS~EDVa~WLeeiGL~qYre~-Fk~NnIdG~eLi~L--tk~T~e~il~~i~r~---------~~k~g------d~itl~~ 95 (144)
-+.+|+...|.+.|+..|-.. .+. .+-+.+..+ ++.+.|+.++-|+++ +|=+| |++..+.
T Consensus 147 ~~~~e~l~~LkeAGld~~~~~g~E~--~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~ 224 (351)
T TIGR03700 147 LPTEEVLDELKEAGLDSMPGGGAEI--FAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHML 224 (351)
T ss_pred CCHHHHHHHHHHcCCCcCCCCcccc--cCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHH
Confidence 456777888888888777521 110 011222333 356777766666665 33455 9999999
Q ss_pred HHHHHHHH
Q 032278 96 ELRRIKVA 103 (144)
Q Consensus 96 el~~~kv~ 103 (144)
.||.+.+.
T Consensus 225 ~Lr~l~~~ 232 (351)
T TIGR03700 225 RLRELQDE 232 (351)
T ss_pred HHHHhhHh
Confidence 99999884
No 196
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=28.79 E-value=96 Score=17.60 Aligned_cols=45 Identities=7% Similarity=0.172 Sum_probs=20.8
Q ss_pred ChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHH
Q 032278 35 SFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFI 80 (144)
Q Consensus 35 S~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i 80 (144)
|.+||++-| .++-......-+++.|.+...-+-..++.+++.+|+
T Consensus 3 t~~e~a~~l-gis~~ti~~~~~~g~i~~~~~g~~~~~~~~~l~~~~ 47 (49)
T TIGR01764 3 TVEEAAEYL-GVSKDTVYRLIHEGELPAYRVGRHYRIPREDVDEYL 47 (49)
T ss_pred CHHHHHHHH-CCCHHHHHHHHHcCCCCeEEeCCeEEEeHHHHHHHH
Confidence 344444444 233333333334444444333344556666666665
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=28.10 E-value=26 Score=33.83 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=17.9
Q ss_pred hhheecccceeEeeecCCcc
Q 032278 10 FLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~~l 29 (144)
|+|||+-|--|.||.+.+++
T Consensus 346 yIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred EEEecCCcceEEEEEeccce
Confidence 89999999999999997744
No 198
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=28.03 E-value=33 Score=33.15 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=15.4
Q ss_pred hhheecccceeEeeecCC
Q 032278 10 FLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~~ 27 (144)
-+.|.|.|.|++||+.+.
T Consensus 283 ~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred ceEEecCCCcEEEEecCC
Confidence 356999999999999955
No 199
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=28.00 E-value=34 Score=26.67 Aligned_cols=21 Identities=19% Similarity=0.570 Sum_probs=13.9
Q ss_pred ccchHHHHHHHhHhhhccchHHHH
Q 032278 70 MFTTEQILRFIRRCHMKWGDFITL 93 (144)
Q Consensus 70 k~T~e~il~~i~r~~~k~gd~itl 93 (144)
..|+|||++|+.. .|||+|-+
T Consensus 73 G~s~~eI~~~~v~---rYG~~Vl~ 93 (148)
T PF03918_consen 73 GKSDEEIIDYFVE---RYGEFVLY 93 (148)
T ss_dssp T--HHHHHHHHHH---HHTTT-EE
T ss_pred CCCHHHHHHHHHH---hcCcceee
Confidence 4578999888765 79999853
No 200
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=27.99 E-value=1.1e+02 Score=26.88 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=43.5
Q ss_pred cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHh
Q 032278 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC 83 (144)
Q Consensus 28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~ 83 (144)
.+....|++|++-.=. .-|=......|+.|++++..+..=.+.+...+-+||+..
T Consensus 62 SitLD~wt~~~l~~m~-~gGN~~a~~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~k 116 (319)
T COG5347 62 SLTLDNWTEEELRRME-VGGNSNANRFYEKNLLDQLLLPIKAKYDSSVAKKYIRKK 116 (319)
T ss_pred eeecccCCHHHHHHHH-HhcchhhhhHhccCCCcccccccccccCHHHHHHHHHHH
Confidence 4567899999997744 489999999999999998666555566666668888874
No 201
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.44 E-value=29 Score=34.66 Aligned_cols=17 Identities=18% Similarity=0.587 Sum_probs=14.9
Q ss_pred hhheecccceeEeeecC
Q 032278 10 FLVYGRKQKSVNIWFND 26 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~ 26 (144)
++|||+-|+-||||...
T Consensus 364 ~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 364 LIATGAEDGKVKVWNTQ 380 (893)
T ss_pred EEEeccCCCcEEEEecc
Confidence 68999999999999883
No 202
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=27.34 E-value=31 Score=30.94 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=16.7
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
..|.|||-|-|.++|..+.
T Consensus 65 ~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVET 83 (327)
T ss_pred ceeeeccccceeEEEEcCC
Confidence 4689999999999999954
No 203
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.28 E-value=1e+02 Score=27.04 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=38.4
Q ss_pred cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHh-hhccchHHHHHHHHHH
Q 032278 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-HMKWGDFITLCKELRR 99 (144)
Q Consensus 28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~-~~k~gd~itl~~el~~ 99 (144)
+.+...-+.++..+|+.+.|.+.||. .||.++|.+- ...|.+.-.|=+++|.
T Consensus 17 ~~~~~~~~~~el~~~~~~~g~~~~r~--------------------~qi~~w~y~~~~~~~~~m~~l~~~~r~ 69 (368)
T PRK14456 17 LQNIRNLRRQELTELLARLGEPAWRA--------------------AQLHQWLFSHRALSFEEMTTLSKPLRR 69 (368)
T ss_pred CCCcccCCHHHHHHHHHHcCCCchHH--------------------HHHHHHHHHcCCCCHHHhccccHHHHH
Confidence 44678899999999999999998873 5777776654 3456666666666664
No 204
>PF05930 Phage_AlpA: Prophage CP4-57 regulatory protein (AlpA); InterPro: IPR010260 This entry is represents phage P4, Orf88. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. In Escherichia coli phage P4 Orf 88 is similar to AlpA of the CP4-57 cryptic prophage []. AlpA acts as a positive transcriptional regulator of slpA, a gene linked to alpA and necessary for suppression of lon mutants [, ]. The sequence of slpA suggests that it encodes an integrase gene closely related to phage P4 int and that both alpA and slpA are part of a cryptic P4-like prophage. Increase in alpA expression increases SlpA synthesis. Increased SlpA leads, in turn, to the excision and loss of the cryptic prophage. ; PDB: 1Z4H_A.
Probab=27.24 E-value=21 Score=22.47 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=0.0
Q ss_pred ccCCChhHHHHHH
Q 032278 31 LTLLSFQDVGLWL 43 (144)
Q Consensus 31 ~~~WS~EDVa~WL 43 (144)
..-|..+||.+||
T Consensus 39 ~~~W~~~eV~~Wi 51 (51)
T PF05930_consen 39 AVRWRESEVEAWI 51 (51)
T ss_dssp -------------
T ss_pred ccccccccccccC
Confidence 5679999999997
No 205
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.92 E-value=32 Score=32.35 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.9
Q ss_pred hhhhhhheecccceeEeeecCCc
Q 032278 6 DALTFLVYGRKQKSVNIWFNDMP 28 (144)
Q Consensus 6 ~~~~~LATGSmDKsV~IWql~~~ 28 (144)
+..|.|++||.||.+++|.+...
T Consensus 121 ~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 121 QDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred cCCeEEEecCCCceEEEEEcCCc
Confidence 56789999999999999999553
No 206
>PF12447 DUF3683: Protein of unknown function (DUF3683); InterPro: IPR022153 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF02754 from PFAM, PF01565 from PFAM, PF02913 from PFAM.
Probab=26.84 E-value=65 Score=25.15 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=24.8
Q ss_pred cCcccchHHH-HHHHhHhhhccchHHHHHHHHHHHHH
Q 032278 67 GMSMFTTEQI-LRFIRRCHMKWGDFITLCKELRRIKV 102 (144)
Q Consensus 67 ~Ltk~T~e~i-l~~i~r~~~k~gd~itl~~el~~~kv 102 (144)
|-|++|+-|| +++++. +...++.|||.-++
T Consensus 10 NYTS~sDReiV~rlLG~------~~w~~L~eLR~~R~ 40 (115)
T PF12447_consen 10 NYTSFSDREIVIRLLGE------EAWRLLEELRGERR 40 (115)
T ss_pred CCCCccHHHHHHHHcCH------HHHHHHHHHHHccc
Confidence 6799999999 888887 66788999987654
No 207
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=26.40 E-value=1e+02 Score=25.43 Aligned_cols=53 Identities=19% Similarity=0.351 Sum_probs=38.4
Q ss_pred eecccceeEe------eecCCcccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccC
Q 032278 13 YGRKQKSVNI------WFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGM 68 (144)
Q Consensus 13 TGSmDKsV~I------Wql~~~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~L 68 (144)
-++.-||+|. |++.+|- |.-=.+|.|-+||...||..|... ...||-+.+++=
T Consensus 83 e~GKTKTanftTG~v~WR~rpPS-v~vrgveaV~e~L~rmgf~rFiRT--k~EinKeAiLne 141 (170)
T COG4396 83 ENGKTKTANFTTGLVKWRIRPPS-VKVRGVEAVLEWLSRMGFARFIRT--KKEINKEAILNE 141 (170)
T ss_pred cCCCceeeeeeeeeEEEeecCCc-ceeccHHHHHHHHHHhhHHHHHHh--HHHhcHHHHhCC
Confidence 4566677664 9997654 333679999999999999998765 445666666654
No 208
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=26.40 E-value=41 Score=24.74 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=15.2
Q ss_pred hhheecccceeEeeecC
Q 032278 10 FLVYGRKQKSVNIWFND 26 (144)
Q Consensus 10 ~LATGSmDKsV~IWql~ 26 (144)
+++|++.|++|++|++.
T Consensus 3 ~~~s~~~d~~v~~~d~~ 19 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTA 19 (300)
T ss_pred EEEEecCCCEEEEEECC
Confidence 57899999999999984
No 209
>KOG3321 consensus Mitochondrial ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=26.07 E-value=43 Score=27.81 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.2
Q ss_pred hhccCcccchHHHHHHHhHhhh
Q 032278 64 YLEGMSMFTTEQILRFIRRCHM 85 (144)
Q Consensus 64 eLi~Ltk~T~e~il~~i~r~~~ 85 (144)
+|.++|..|.|-.|+||+||.|
T Consensus 118 ~l~~~tgsTl~tfleYI~rn~p 139 (175)
T KOG3321|consen 118 ELYSVTGSTLDTFLEYIQRNLP 139 (175)
T ss_pred HHhhcCchHHHHHHHHHHhhCh
Confidence 5778899999999999999965
No 210
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.02 E-value=40 Score=31.10 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=17.8
Q ss_pred hhhheecccceeEeeecCCcc
Q 032278 9 TFLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~l 29 (144)
-||+...-|||++||.+.+..
T Consensus 347 kyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred eEEEEEecCCcEEEEEeccce
Confidence 378899999999999996644
No 211
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=25.95 E-value=35 Score=31.48 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=16.5
Q ss_pred hhhheecccceeEeeecC
Q 032278 9 TFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~ 26 (144)
++|+.||.|+||+.+++.
T Consensus 185 ~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFS 202 (430)
T ss_pred heEEeccCCCeEEEEecc
Confidence 689999999999999993
No 212
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=25.85 E-value=1.1e+02 Score=22.61 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=33.1
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhc-cCcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi-~Ltk~T~e~il~~i~r 82 (144)
..++.+++..|+...|.+ +.+.|..++-.=++|. .....|+++++..|..
T Consensus 35 ~~~~~~eL~~~l~~~~~g-~~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~ 85 (131)
T PRK01655 35 SPLTIDEIKQILRMTEDG-TDEIISTRSKVFQKLNVDVESLSLQDLIKLISD 85 (131)
T ss_pred ChhhHHHHHHHHHHhcCC-HHHHHhcCcHHHHhCCCCcccCCHHHHHHHHHh
Confidence 578899999999999765 6676665554444431 1124567777776654
No 213
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=25.82 E-value=61 Score=25.68 Aligned_cols=30 Identities=10% Similarity=-0.035 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHhcCcchHHHHhhHcCcCh
Q 032278 33 LLSFQDVGLWLEEINLGGYRQIFKENGVNG 62 (144)
Q Consensus 33 ~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG 62 (144)
.=|+|+..+||++-||.+-...|+.-++.|
T Consensus 208 ~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~ 237 (247)
T PRK15451 208 TDSVETHKARLHKAGFEHSELWFQCFNFGS 237 (247)
T ss_pred cCCHHHHHHHHHHcCchhHHHHHHHHhHHH
Confidence 458899999999999999999998877665
No 214
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=25.75 E-value=32 Score=32.17 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=16.0
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
.+|+|+|.||.|+||..
T Consensus 186 s~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDP 202 (472)
T ss_pred ceeeeecccceeEEEcC
Confidence 67999999999999998
No 215
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=25.65 E-value=1.9e+02 Score=24.05 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=40.4
Q ss_pred hhHHHHHHHhcCcchHHHHhhHcC---cChhhhccC--cccchHHHHHHHhHh---------hhccc------hHHHHHH
Q 032278 36 FQDVGLWLEEINLGGYRQIFKENG---VNGEYLEGM--SMFTTEQILRFIRRC---------HMKWG------DFITLCK 95 (144)
Q Consensus 36 ~EDVa~WLeeiGL~qYre~Fk~Nn---IdG~eLi~L--tk~T~e~il~~i~r~---------~~k~g------d~itl~~ 95 (144)
.+|+..-|++.|+..|-. |+ .+=+-...+ .+.|.++.++-|+.+ ++=+| |++..+.
T Consensus 142 ~~e~l~~Lk~aG~~~~~~----~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~ 217 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPG----GGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLE 217 (340)
T ss_pred HHHHHHHHHHcCCCcCCC----CcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHH
Confidence 377778888888876631 10 111222233 245788777766665 44556 8999999
Q ss_pred HHHHHHHH
Q 032278 96 ELRRIKVA 103 (144)
Q Consensus 96 el~~~kv~ 103 (144)
.|+.+++-
T Consensus 218 ~l~~l~~~ 225 (340)
T TIGR03699 218 RIRELQDK 225 (340)
T ss_pred HHHHhchh
Confidence 99999874
No 216
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=25.21 E-value=2.1e+02 Score=21.03 Aligned_cols=14 Identities=7% Similarity=-0.068 Sum_probs=9.5
Q ss_pred hHHHHHHHhcCcch
Q 032278 37 QDVGLWLEEINLGG 50 (144)
Q Consensus 37 EDVa~WLeeiGL~q 50 (144)
+++..|.++.|++.
T Consensus 15 ~~~~~~~~~~g~~~ 28 (205)
T PRK13582 15 EIWIAFAEKTGIPE 28 (205)
T ss_pred hHHHHHHHHcCChH
Confidence 45666778888754
No 217
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.11 E-value=14 Score=35.19 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=42.7
Q ss_pred ecccceeEeee-cCC-------------cccccCCChhH-HHHHHHhcCcchHHHHhhHcCcChhhhccCcccchH
Q 032278 14 GRKQKSVNIWF-NDM-------------PHALTLLSFQD-VGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTE 74 (144)
Q Consensus 14 GSmDKsV~IWq-l~~-------------~l~~~~WS~ED-Va~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e 74 (144)
+..+-..++|| +.. ...|..|+.|- |.+=.-+.-+.-.+..+-.|++||..+..|++++++
T Consensus 217 ~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESqv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~~ 292 (567)
T KOG1195|consen 217 DGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQVSNEKMQEALDLLRSANLTEEIDGTIVIDLSKIDKK 292 (567)
T ss_pred cccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHHHHHHHHHHHHHHHHhcCCcccCCCcEEEEecccCcc
Confidence 44556778998 422 56788999887 655444444555566666788999999999976654
No 218
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=25.03 E-value=68 Score=21.83 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=15.8
Q ss_pred hhccchHHHHHHHHHHHHHHHhh
Q 032278 84 HMKWGDFITLCKELRRIKVACLK 106 (144)
Q Consensus 84 ~~k~gd~itl~~el~~~kv~~~~ 106 (144)
.+.+-+|+.++.-+++.+-.+.+
T Consensus 60 ~I~~~eF~~~~~~~~~~~~g~~~ 82 (96)
T smart00027 60 ELDKDEFALAMHLIYRKLNGYPI 82 (96)
T ss_pred CcCHHHHHHHHHHHHHHHcCCCC
Confidence 46677788888777776665544
No 219
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.01 E-value=18 Score=33.74 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=15.2
Q ss_pred hheecccceeEeeecCC
Q 032278 11 LVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 11 LATGSmDKsV~IWql~~ 27 (144)
+++||.|+++|+|.|..
T Consensus 276 vVsgs~DRtiK~WDl~k 292 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQK 292 (459)
T ss_pred eeeccccchhhhhhhhh
Confidence 78999999999999944
No 220
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.00 E-value=47 Score=25.08 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=18.3
Q ss_pred eecCCcccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccC
Q 032278 23 WFNDMPHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGM 68 (144)
Q Consensus 23 Wql~~~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~L 68 (144)
|+..++.-... +.++|-+||++-||.+|... .=.||=..|...
T Consensus 81 ~R~~~~~~~~~-~~~~vl~~Lk~~gl~~~Ir~--keev~k~alk~~ 123 (149)
T PF07352_consen 81 FRKSTPKVKVR-DEEKVLEWLKENGLKEFIRT--KEEVDKEALKKE 123 (149)
T ss_dssp ----------T--HHHHHHHHHHCT-GCC----------HHHHTTS
T ss_pred EEecCCcccCC-CHHHHHHHHHHcCchhhEEe--eeecCHHHHhcC
Confidence 55555443223 89999999999999999664 224555555444
No 221
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=24.99 E-value=70 Score=24.83 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=22.1
Q ss_pred CCChhHHHHHHHhcCcchHHHHhhHcCc
Q 032278 33 LLSFQDVGLWLEEINLGGYRQIFKENGV 60 (144)
Q Consensus 33 ~WS~EDVa~WLeeiGL~qYre~Fk~NnI 60 (144)
.=|+|++.+||++-||.+-+..|+.-+.
T Consensus 205 ~~s~~~~~~~l~~aGF~~~~~~~~~~~~ 232 (239)
T TIGR00740 205 TDSIETHKARLKNVGFSHVELWFQCFNF 232 (239)
T ss_pred CCCHHHHHHHHHHcCCchHHHHHHHHhH
Confidence 4588999999999999987766665443
No 222
>PF15013 CCSMST1: CCSMST1 family
Probab=24.86 E-value=30 Score=25.04 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=20.1
Q ss_pred HHHHHHhhCcccccCCCCCCcchhhh
Q 032278 99 RIKVACLKGEQKVRRPWWAPSCLSVV 124 (144)
Q Consensus 99 ~~kv~~~~~~~~~~~~~w~p~~~s~v 124 (144)
+.+|.+-.|-+.-|.|||-|-.+|.-
T Consensus 14 ~w~v~~s~~~~~~~~PWyq~~~is~s 39 (77)
T PF15013_consen 14 RWTVEHSRGGKQQRMPWYQVYPISLS 39 (77)
T ss_pred ccccccccCCCCCCCcceeeehhHHH
Confidence 45777777777777899999887753
No 223
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.58 E-value=39 Score=30.23 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=14.4
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
-+-||+-|+||+||+.
T Consensus 170 qilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDT 185 (325)
T ss_pred ceeecCCCccEEEEec
Confidence 4569999999999998
No 224
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=24.53 E-value=67 Score=18.93 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=16.3
Q ss_pred ccCCChhHHHHHHHhcCcchHHHHhhHc
Q 032278 31 LTLLSFQDVGLWLEEINLGGYRQIFKEN 58 (144)
Q Consensus 31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~N 58 (144)
-.+|+.+|||+-+-= .-..+...|++.
T Consensus 6 ~~~~~l~~iA~~~g~-S~~~f~r~Fk~~ 32 (42)
T PF00165_consen 6 QQKLTLEDIAEQAGF-SPSYFSRLFKKE 32 (42)
T ss_dssp -SS--HHHHHHHHTS--HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCC-CHHHHHHHHHHH
Confidence 357999999976543 445567777764
No 225
>PRK00304 hypothetical protein; Provisional
Probab=24.52 E-value=83 Score=22.75 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=38.1
Q ss_pred cCcccchHHH-HHHHhHhhhccchHHHHHHHHHHHHHHHhhCcccc
Q 032278 67 GMSMFTTEQI-LRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKV 111 (144)
Q Consensus 67 ~Ltk~T~e~i-l~~i~r~~~k~gd~itl~~el~~~kv~~~~~~~~~ 111 (144)
.|+.+|.+-+ -+|+-|=++.+|+-.+|-.-+...|-+...|+--+
T Consensus 7 ~L~~eTL~nLIeefv~ReGTDyg~E~sL~~kv~qv~~qL~~G~~vI 52 (75)
T PRK00304 7 QLEADTLTRLIEDFVTRDGTDNGDETPLETRVLRVRQALTKGQAVI 52 (75)
T ss_pred hCCHHHHHHHHHHHHhccCccCcccccHHHHHHHHHHHHHcCCEEE
Confidence 4677777776 57999999999999999999999999999998654
No 226
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=24.35 E-value=35 Score=31.94 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=17.2
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
+|+++|+.|.+||+||.+.
T Consensus 151 ~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 151 TWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred CEEEEcCCCceEEecccch
Confidence 6899999999999999854
No 227
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.33 E-value=1.3e+02 Score=25.66 Aligned_cols=48 Identities=27% Similarity=0.481 Sum_probs=32.5
Q ss_pred ccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHh-hhccchHHHHHHHHH
Q 032278 31 LTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-HMKWGDFITLCKELR 98 (144)
Q Consensus 31 ~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~-~~k~gd~itl~~el~ 98 (144)
....+.+++.+|+.+.|++.||. .||.++|.+- ...|-+.-.|=+++|
T Consensus 4 ~~~~~~~~~~~~~~~~g~~~~r~--------------------~qi~~~~~~~~~~~~~~~~~~~~~~r 52 (343)
T PRK14469 4 ILDLSYEELVSEITELGLEKYRA--------------------DQILDWIYKKKVFNFDEMTNLSKDHR 52 (343)
T ss_pred cccCCHHHHHHHHHHcCCCchHH--------------------HHHHHHHHhcCCCCHHHhccccHHHH
Confidence 46788999999999999999884 4666665543 233555555555554
No 228
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=24.05 E-value=39 Score=24.45 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=23.9
Q ss_pred ccceeEeeec----CCcccccCCChhHHHHHHHhcCc
Q 032278 16 KQKSVNIWFN----DMPHALTLLSFQDVGLWLEEINL 48 (144)
Q Consensus 16 mDKsV~IWql----~~~l~~~~WS~EDVa~WLeeiGL 48 (144)
+.|-=||+++ +..-.++.=+.||+.+||..|++
T Consensus 80 Y~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 80 YTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINY 116 (119)
T ss_dssp BTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred cccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhh
Confidence 3445577777 23457888999999999999875
No 229
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=23.94 E-value=1.5e+02 Score=21.63 Aligned_cols=45 Identities=9% Similarity=0.162 Sum_probs=29.0
Q ss_pred cCCChhHHHHHHHhcCcchH----HHHhhHcCcChhhhccCcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGY----RQIFKENGVNGEYLEGMSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qY----re~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r 82 (144)
..+|.+++..||.+.|+... ...|++.+.+- ...|++++++.|..
T Consensus 35 ~p~s~~eL~~~l~~~g~~~l~n~~~~~~r~~~~~~------~~ls~~e~~~ll~~ 83 (113)
T cd03033 35 EPWTAETLRPFFGDLPVAEWFNPAAPRVKSGEVVP------EALDEEEALALMIA 83 (113)
T ss_pred CCCCHHHHHHHHHHcCHHHHHhcccHHHHhcCCCc------cCCCHHHHHHHHHh
Confidence 56899999999999986432 23445443332 23366777776644
No 230
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=23.82 E-value=39 Score=30.34 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=17.6
Q ss_pred hhhhhheecccceeEeeec
Q 032278 7 ALTFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 7 ~~~~LATGSmDKsV~IWql 25 (144)
-.|++.|||.|.+-++|+.
T Consensus 201 d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 201 DRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred CcceEEecccCccceeeec
Confidence 4689999999999999998
No 231
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=23.81 E-value=38 Score=32.03 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.0
Q ss_pred chhh-hhhhhheecccceeEeeec
Q 032278 3 RLFD-ALTFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 3 ~~~~-~~~~LATGSmDKsV~IWql 25 (144)
|+|- ..-+|+.||||..|+||..
T Consensus 221 ~~fp~~~hLlLS~gmD~~vklW~v 244 (503)
T KOG0282|consen 221 QWFPKKGHLLLSGGMDGLVKLWNV 244 (503)
T ss_pred hhccceeeEEEecCCCceEEEEEE
Confidence 3444 5668999999999999999
No 232
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=23.76 E-value=41 Score=32.52 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=16.4
Q ss_pred hhhhheecccceeEeeec
Q 032278 8 LTFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 8 ~~~LATGSmDKsV~IWql 25 (144)
-.++|+|+-|+|+.||+.
T Consensus 329 g~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 329 GKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred cchhhhcccCCceeeeec
Confidence 367999999999999997
No 233
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.39 E-value=42 Score=34.49 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=14.7
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
++|+||-|-||+||+|
T Consensus 149 lIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDI 164 (1202)
T ss_pred eEEEecccceEEEEee
Confidence 6889999999999999
No 234
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.33 E-value=1.4e+02 Score=26.15 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=35.0
Q ss_pred cccccCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhccCcccchHHHHHHHhHhh-hccchHHHHHHHHHH
Q 032278 28 PHALTLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCH-MKWGDFITLCKELRR 99 (144)
Q Consensus 28 ~l~~~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~-~k~gd~itl~~el~~ 99 (144)
+.+....+.++..+|+.+.|++.||. .||.++|.+-+ ..|.+.-.|=+++|.
T Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~fra--------------------~Qi~~wiy~~~~~~~~~mt~l~~~~r~ 56 (342)
T PRK14465 4 KIPLKGRTLKELSEIMVSLGEKKFRA--------------------KQIYHGLYVNRYETWDQFTTFSKEVKE 56 (342)
T ss_pred ccCcccCCHHHHHHHHHHcCCCchHH--------------------HHHHHHHHHcCCCCHHHhccccHHHHH
Confidence 34567788999999999999988873 56666655542 335555555555554
No 235
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=23.24 E-value=58 Score=26.11 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=18.4
Q ss_pred cccCCChhHHHHHHHhcCcc
Q 032278 30 ALTLLSFQDVGLWLEEINLG 49 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL~ 49 (144)
...+||.+||-+++.+.|++
T Consensus 174 Pi~~Wt~~dV~~Yi~~~~lp 193 (241)
T PRK02090 174 PLADWTNEDVWAYLKEHDLP 193 (241)
T ss_pred ehhhCCHHHHHHHHHHcCCC
Confidence 56899999999999999987
No 236
>smart00740 PASTA PASTA domain.
Probab=23.02 E-value=89 Score=18.44 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=17.7
Q ss_pred cccCCChhHHHHHHHhcCcc
Q 032278 30 ALTLLSFQDVGLWLEEINLG 49 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL~ 49 (144)
++..|+.+++...|++.||.
T Consensus 9 ~~~g~~~~~a~~~l~~~g~~ 28 (66)
T smart00740 9 DVIGLSKEEAKKLLKALGLK 28 (66)
T ss_pred CcCCCCHHHHHHHHHHCCCE
Confidence 56789999999999999984
No 237
>PRK06934 flavodoxin; Provisional
Probab=23.00 E-value=53 Score=27.20 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=12.8
Q ss_pred ChhHHHHHHHhcCcc
Q 032278 35 SFQDVGLWLEEINLG 49 (144)
Q Consensus 35 S~EDVa~WLeeiGL~ 49 (144)
+.++|.+||+++|+.
T Consensus 206 ~~~~I~~Wl~~lg~~ 220 (221)
T PRK06934 206 TPKEIINWLNTLPNM 220 (221)
T ss_pred hHHHHHHHHHHcCCC
Confidence 467899999999974
No 238
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.92 E-value=46 Score=30.54 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=15.9
Q ss_pred hhhheecccceeEeeec
Q 032278 9 TFLVYGRKQKSVNIWFN 25 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql 25 (144)
+.||||.-|.+++||..
T Consensus 157 s~latgg~dg~lRv~~~ 173 (398)
T KOG0771|consen 157 SKLATGGTDGTLRVWEW 173 (398)
T ss_pred CEeeeccccceEEEEec
Confidence 68999999999999995
No 239
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=22.89 E-value=73 Score=22.80 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.1
Q ss_pred hHHHHHHHhHhhhccchHHHHHHHHHHH
Q 032278 73 TEQILRFIRRCHMKWGDFITLCKELRRI 100 (144)
Q Consensus 73 ~e~il~~i~r~~~k~gd~itl~~el~~~ 100 (144)
.|+.+.|-|.-.-+-||-++||.|.+.|
T Consensus 9 IE~AIN~WR~r~Ps~~d~~~Lcpea~aL 36 (71)
T PF12512_consen 9 IEAAINYWRARSPSSGDELALCPEARAL 36 (71)
T ss_pred HHHHHHHHHhcCCCCCcccccCHHHHHH
Confidence 4666888888888889999999999876
No 240
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=22.70 E-value=55 Score=28.75 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=26.3
Q ss_pred hhhheecccceeEeeecCCcccccCCChhH
Q 032278 9 TFLVYGRKQKSVNIWFNDMPHALTLLSFQD 38 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~l~~~~WS~ED 38 (144)
++||+-+.++++-+|.++.=..-..|..||
T Consensus 242 ~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 242 SLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 689999999999999999877778888775
No 241
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=22.48 E-value=61 Score=22.96 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=18.4
Q ss_pred ecCCcccccCCChhHHHHHHHhcCc
Q 032278 24 FNDMPHALTLLSFQDVGLWLEEINL 48 (144)
Q Consensus 24 ql~~~l~~~~WS~EDVa~WLeeiGL 48 (144)
.....+.+.-.-.++|-.||.+.||
T Consensus 63 ~~~g~i~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 63 ELTGHIEIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred ecCCEEEEcCccHHHHHHHHHHCcC
Confidence 3333445556668999999999997
No 242
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=22.41 E-value=89 Score=28.25 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=62.2
Q ss_pred chHHHHhhHcCcChhhhccCc---ccchHHHHHHHhHhhhc-----------------------------cchHHHHHHH
Q 032278 49 GGYRQIFKENGVNGEYLEGMS---MFTTEQILRFIRRCHMK-----------------------------WGDFITLCKE 96 (144)
Q Consensus 49 ~qYre~Fk~NnIdG~eLi~Lt---k~T~e~il~~i~r~~~k-----------------------------~gd~itl~~e 96 (144)
++=-+-|++|+-=|+.|..|- .+|.-|+++-+|-+--| -.+|+.-|++
T Consensus 173 ~~~w~~fk~~~~~~~~~~~lk~~~~eSeNp~i~~~r~itdkv~~~~~~lF~ete~a~~l~eIk~~DPsFd~~~Fl~gar~ 252 (378)
T TIGR00984 173 YSKVEDFKESNVVYRKIQELKKKYDESENPLVRMMRGVTDKIGGVFSGMFSETEVSEVLTEFKKIDPTFDKEHFLRFLRE 252 (378)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhcccChhhhHhHHhhhhhhhhhhcccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 455577888887777776442 35666666655554333 3468888888
Q ss_pred H--HHHHHHHhhCcccccCCCCCCcchhhhhhhhhhhcccc
Q 032278 97 L--RRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQS 135 (144)
Q Consensus 97 l--~~~kv~~~~~~~~~~~~~w~p~~~s~v~~~~~~~~~~~ 135 (144)
- -.|=-|.++|.-+.-+||=.|..+.+.-..+..+..|.
T Consensus 253 aI~p~ILeAf~kGD~e~LK~~lse~vy~~f~a~I~qr~~~G 293 (378)
T TIGR00984 253 YIVPEILEAYVKGDLEVLKSWCSEAPFSVYATVVKEYKKMG 293 (378)
T ss_pred HHHHHHHHHHHcCCHHHHHHhhCHHHHHHHHHHHHHHHHCC
Confidence 7 45788999999999999999998887776666666554
No 243
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=22.36 E-value=35 Score=25.48 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=25.0
Q ss_pred hHHHHhhHcCcChhhhccCcccchHHHHHHHhHhh
Q 032278 50 GYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCH 84 (144)
Q Consensus 50 qYre~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~ 84 (144)
.+..-|.++.+ ..+-.|++.|+++++.+|+.+|
T Consensus 39 ~~~~~l~~dD~--~~~~eLs~Lt~~~L~~~Ik~L~ 71 (95)
T PF10044_consen 39 KWLQELTKDDM--EKMNELSSLTPDQLIEKIKKLQ 71 (95)
T ss_pred ccccccCHHHH--HHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555666 5788899999999999999865
No 244
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=22.15 E-value=49 Score=30.26 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=17.2
Q ss_pred hhhhhheecccceeEeeecC
Q 032278 7 ALTFLVYGRKQKSVNIWFND 26 (144)
Q Consensus 7 ~~~~LATGSmDKsV~IWql~ 26 (144)
+.-.+-++|.|++|+.|++.
T Consensus 83 s~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred CCCeeEEeccCCeEEEEEee
Confidence 55677899999999999993
No 245
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=22.12 E-value=41 Score=31.28 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=15.5
Q ss_pred hhheecccceeEeeec
Q 032278 10 FLVYGRKQKSVNIWFN 25 (144)
Q Consensus 10 ~LATGSmDKsV~IWql 25 (144)
.||||+.|+-|+||++
T Consensus 28 ~laT~G~D~~iriW~v 43 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKV 43 (434)
T ss_pred ceecccCccceeeeee
Confidence 7999999999999999
No 246
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.63 E-value=43 Score=31.67 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=23.9
Q ss_pred hhhheecccceeEeeecCC------------cccccCCChhH
Q 032278 9 TFLVYGRKQKSVNIWFNDM------------PHALTLLSFQD 38 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~------------~l~~~~WS~ED 38 (144)
+++|.||-|.-|.||.-.. ..+|-.|++.|
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 5899999999999998722 44777787765
No 247
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=21.55 E-value=2.4e+02 Score=19.36 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=31.2
Q ss_pred cCCChhHHHHHHHhcCcchHHHHhhHcCcChhhhcc--CcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEINLGGYRQIFKENGVNGEYLEG--MSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeeiGL~qYre~Fk~NnIdG~eLi~--Ltk~T~e~il~~i~r 82 (144)
..++.+++..|+...|. +..+.|..+.-.=++|.. ....|.++++++|..
T Consensus 34 ~~~~~~~l~~~~~~~~~-~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~ 85 (105)
T cd02977 34 EPPTKEELKELLAKLGL-GVEDLFNTRGTPYRKLGLADKDELSDEEALELMAE 85 (105)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHh
Confidence 45778888888888884 466666655333333221 234567888877754
No 248
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=21.50 E-value=1e+02 Score=21.71 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=35.5
Q ss_pred HHhcCcchHHHHhhHcCcC--hhhhccCcccchHHHHHHHhHh------hhccchHHHHHHHH
Q 032278 43 LEEINLGGYRQIFKENGVN--GEYLEGMSMFTTEQILRFIRRC------HMKWGDFITLCKEL 97 (144)
Q Consensus 43 LeeiGL~qYre~Fk~NnId--G~eLi~Ltk~T~e~il~~i~r~------~~k~gd~itl~~el 97 (144)
+.+-|++.....|+.=.+. |.|..+| .-+|.+.... .++|.|||..|.=|
T Consensus 8 ~~~~Glp~l~~~~k~~k~kgkghE~~dL-----~~ll~~Yq~W~h~LfPk~~F~d~i~~vE~L 65 (83)
T PF07962_consen 8 LSPKGLPYLRKNFKKFKFKGKGHEYEDL-----RRLLQFYQLWAHRLFPKASFEDFIERVEKL 65 (83)
T ss_pred cCCCCHHHHHHHHHHcCcCCCCCHHHHH-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3457999999999888887 4554444 4455555443 47999999988765
No 249
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=20.99 E-value=2.2e+02 Score=17.62 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=9.9
Q ss_pred cccchHHHHHHHhH
Q 032278 69 SMFTTEQILRFIRR 82 (144)
Q Consensus 69 tk~T~e~il~~i~r 82 (144)
...++.-+|||+|-
T Consensus 27 ~~~~d~~llRFLRA 40 (55)
T PF03765_consen 27 EDHDDNFLLRFLRA 40 (55)
T ss_dssp SS-SHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 33466777999997
No 250
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.84 E-value=1.7e+02 Score=19.38 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.7
Q ss_pred hhccchHHHHHHHHHHHHHHHh
Q 032278 84 HMKWGDFITLCKELRRIKVACL 105 (144)
Q Consensus 84 ~~k~gd~itl~~el~~~kv~~~ 105 (144)
.-.|.|||.-.+||..++--+.
T Consensus 47 ~~nY~~fI~as~~I~~m~~~~~ 68 (87)
T PF08700_consen 47 YENYRDFIEASDEISSMENDLS 68 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 5579999999999999987653
No 251
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.82 E-value=1.4e+02 Score=29.90 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.8
Q ss_pred ChhHHHHHHHhcCcchHHHHhhHcC
Q 032278 35 SFQDVGLWLEEINLGGYRQIFKENG 59 (144)
Q Consensus 35 S~EDVa~WLeeiGL~qYre~Fk~Nn 59 (144)
..|++-+|-++.-|.+|.++|++|.
T Consensus 229 vreelIkwf~~qqL~ey~~IF~en~ 253 (793)
T KOG2180|consen 229 VREELIKWFCSQQLEEYEQIFRENE 253 (793)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3588999999999999999999986
No 252
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=20.80 E-value=49 Score=31.12 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=17.2
Q ss_pred hhhheecccceeEeeecCC
Q 032278 9 TFLVYGRKQKSVNIWFNDM 27 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~ 27 (144)
|+|+.|+.|+.|-||.+..
T Consensus 290 tlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 290 TLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cEEEeeCCCCCEEEEecch
Confidence 7899999999999999944
No 253
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.71 E-value=1.4e+02 Score=21.41 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.7
Q ss_pred HhcCcchHHHH-----hhHcCcChhhhccCcccchHHHHHHHhHhhhccc---hHHHHHHHHHHHHHH
Q 032278 44 EEINLGGYRQI-----FKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWG---DFITLCKELRRIKVA 103 (144)
Q Consensus 44 eeiGL~qYre~-----Fk~NnIdG~eLi~Ltk~T~e~il~~i~r~~~k~g---d~itl~~el~~~kv~ 103 (144)
+++++.+..+. |++|.|+.-+..+-.. .||+.+-++....+-| .+=+|++-|+.++..
T Consensus 15 ~~V~~~~Wk~laR~LGLse~~I~~i~~~~~~~--~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~ 80 (96)
T cd08315 15 KEVPFDSWNRLMRQLGLSENEIDVAKANERVT--REQLYQMLLTWVNKTGRKASVNTLLDALEAIGLR 80 (96)
T ss_pred HHCCHHHHHHHHHHcCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccc
Confidence 34454444444 5677888877777544 8999888888777766 556688888887543
No 254
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=20.65 E-value=50 Score=28.23 Aligned_cols=34 Identities=35% Similarity=0.461 Sum_probs=28.0
Q ss_pred cchHHHHH-----HHHHHHHHHHhhCcccccCCCCCCcchhhhh
Q 032278 87 WGDFITLC-----KELRRIKVACLKGEQKVRRPWWAPSCLSVVF 125 (144)
Q Consensus 87 ~gd~itl~-----~el~~~kv~~~~~~~~~~~~~w~p~~~s~v~ 125 (144)
-||.+|+. --|+.||||+.. -+.|=.|..++.|.
T Consensus 149 ~Gd~lt~aDcsLlPKL~~i~va~k~-----yk~~~IP~~lt~V~ 187 (221)
T KOG1422|consen 149 DGDKLTLADCSLLPKLHHIKVAAKH-----YKNFEIPASLTGVW 187 (221)
T ss_pred cCCeeeeehhhhchhHHHHHHHHHH-----hcCCCCchhhhHHH
Confidence 38998864 579999999987 56788999999874
No 255
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=20.38 E-value=58 Score=30.66 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=17.8
Q ss_pred hhhheecccceeEeeecCCcc
Q 032278 9 TFLVYGRKQKSVNIWFNDMPH 29 (144)
Q Consensus 9 ~~LATGSmDKsV~IWql~~~l 29 (144)
-|||||.-|+-|.||..+...
T Consensus 215 kylatgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE 235 (479)
T ss_pred cEEEecCCCceEEEecCcccc
Confidence 489999999999999985533
No 256
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=20.34 E-value=79 Score=24.60 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=18.5
Q ss_pred cccCCChhHHHHHHHhcCcch
Q 032278 30 ALTLLSFQDVGLWLEEINLGG 50 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL~q 50 (144)
...+||.+||-+.|.+.|++-
T Consensus 128 Pi~~Wt~~dVw~Yi~~~~lp~ 148 (191)
T TIGR02055 128 PLADWTSEDVWEYIADNELPY 148 (191)
T ss_pred ecccCCHHHHHHHHHHcCCCC
Confidence 558999999999999999863
No 257
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=20.29 E-value=66 Score=27.68 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=23.7
Q ss_pred HHHHhcCcchHHHHhhHcCcChhhhccCcccchHH
Q 032278 41 LWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQ 75 (144)
Q Consensus 41 ~WLeeiGL~qYre~Fk~NnIdG~eLi~Ltk~T~e~ 75 (144)
=||+++|-++|++.|++..+.-..=..=.+.|..|
T Consensus 163 YWlrQLGe~D~v~~f~~AFr~~YPd~~D~~Ls~qQ 197 (227)
T PF12060_consen 163 YWLRQLGEQDVVEEFIQAFRATYPDSKDAKLSKQQ 197 (227)
T ss_pred HHHHHhCchhHHHHHHHHHHHhCCChhhhhccHHH
Confidence 49999999999999988766544333333333333
No 258
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=20.25 E-value=77 Score=24.51 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.2
Q ss_pred cccCCChhHHHHHHHhcCcc
Q 032278 30 ALTLLSFQDVGLWLEEINLG 49 (144)
Q Consensus 30 ~~~~WS~EDVa~WLeeiGL~ 49 (144)
...+||.+||-+.|.+.|++
T Consensus 149 PI~dWt~~dVw~Yi~~~~lp 168 (212)
T TIGR00434 149 PLIDWTWKDVYQYIDAHNLP 168 (212)
T ss_pred ehhhCCHHHHHHHHHHcCCC
Confidence 45899999999999999987
No 259
>PF05452 Clavanin: Clavanin; InterPro: IPR008453 This family consists of clavanin proteins from the haemocytes of the invertebrate Styela clava (Sea squirt), a solitary tunicate. The family is made up of four alpha-helical antimicrobial peptides, clavanins A, B, C and D. The tunicate peptides resemble magainins in size, primary sequence and antibacterial activity. Synthetic clavanin A displays comparable antimicrobial activity to magainins and cecropins. The presence of alpha-helical antimicrobial peptides in the haemocytes of a urochordate suggests that such peptides are primeval effectors of innate immunity in the vertebrate lineage [].; GO: 0005576 extracellular region
Probab=20.20 E-value=81 Score=23.23 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=23.7
Q ss_pred CcChhhhccCcccchHHHHHHHhHhhhccchHHH
Q 032278 59 GVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFIT 92 (144)
Q Consensus 59 nIdG~eLi~Ltk~T~e~il~~i~r~~~k~gd~it 92 (144)
+||-+.|+. +|-..|..+|||++.+--.|+||-
T Consensus 14 gi~akslee-~k~~eekvf~flG~IIHhVGnfVh 46 (80)
T PF05452_consen 14 GINAKSLEE-SKSDEEKVFRFLGSIIHHVGNFVH 46 (80)
T ss_pred CcCcchhhh-hhhhHHHHHHHHHHHHHhhhhhhh
Confidence 456665554 344567779999999888898873
No 260
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=20.03 E-value=2.8e+02 Score=18.42 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=27.9
Q ss_pred cCCChhHHHHHHHhc---CcchH---HHHhhHcCcChhhhccCcccchHHHHHHHhH
Q 032278 32 TLLSFQDVGLWLEEI---NLGGY---RQIFKENGVNGEYLEGMSMFTTEQILRFIRR 82 (144)
Q Consensus 32 ~~WS~EDVa~WLeei---GL~qY---re~Fk~NnIdG~eLi~Ltk~T~e~il~~i~r 82 (144)
.-||+|+=...|+.+ |.+.. ..+= ++...++.|.+||-..+..
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~--------~~~~~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRIL--------ELMVVDGLTRDQVASHLQK 52 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHH--------HHcCCCCCCHHHHHHHHHH
Confidence 469999998888765 55555 4431 3344467788888655544
Done!