Query 032280
Match_columns 144
No_of_seqs 242 out of 1412
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 12:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.3E-19 2.9E-24 131.3 11.2 80 61-142 31-112 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.6E-18 7.9E-23 137.9 12.2 79 62-142 267-347 (352)
3 PF00076 RRM_1: RNA recognitio 99.8 2E-18 4.3E-23 108.4 8.3 69 67-137 1-70 (70)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.6E-18 9.9E-23 137.4 10.7 78 63-142 2-81 (352)
5 KOG0122 Translation initiation 99.8 8.2E-18 1.8E-22 129.4 10.3 82 60-143 185-268 (270)
6 KOG0121 Nuclear cap-binding pr 99.8 3E-18 6.6E-23 120.8 7.2 78 63-142 35-114 (153)
7 TIGR01659 sex-lethal sex-letha 99.7 9.8E-18 2.1E-22 136.8 11.3 79 62-142 105-185 (346)
8 KOG0125 Ataxin 2-binding prote 99.7 1.2E-17 2.7E-22 132.9 9.0 81 59-141 91-171 (376)
9 PLN03120 nucleic acid binding 99.7 3.5E-17 7.6E-22 128.0 10.8 75 64-142 4-78 (260)
10 TIGR01659 sex-lethal sex-letha 99.7 8.8E-17 1.9E-21 131.2 10.9 79 64-142 193-273 (346)
11 KOG1457 RNA binding protein (c 99.7 3.2E-16 7E-21 119.7 11.8 82 61-142 31-116 (284)
12 KOG0107 Alternative splicing f 99.7 1.2E-16 2.6E-21 117.8 8.2 75 64-143 10-84 (195)
13 PLN03121 nucleic acid binding 99.7 4.2E-16 9E-21 120.5 10.3 74 62-139 3-76 (243)
14 TIGR01645 half-pint poly-U bin 99.7 5.5E-16 1.2E-20 133.9 11.0 78 63-142 203-282 (612)
15 TIGR01628 PABP-1234 polyadenyl 99.7 4.5E-16 9.8E-21 133.5 10.4 75 66-142 2-78 (562)
16 KOG0105 Alternative splicing f 99.7 2.2E-16 4.8E-21 117.7 7.2 78 62-142 4-81 (241)
17 PF14259 RRM_6: RNA recognitio 99.7 1.2E-15 2.6E-20 96.6 8.9 69 67-137 1-70 (70)
18 smart00362 RRM_2 RNA recogniti 99.6 1.7E-15 3.7E-20 93.8 9.3 71 66-138 1-71 (72)
19 KOG0113 U1 small nuclear ribon 99.6 1.3E-15 2.8E-20 120.2 10.6 85 55-141 92-178 (335)
20 TIGR01645 half-pint poly-U bin 99.6 8.6E-16 1.9E-20 132.7 10.3 78 62-141 105-184 (612)
21 PLN03213 repressor of silencin 99.6 1.2E-15 2.5E-20 127.4 9.8 76 62-141 8-85 (759)
22 TIGR01648 hnRNP-R-Q heterogene 99.6 2.5E-15 5.4E-20 129.3 10.4 80 62-142 56-136 (578)
23 TIGR01648 hnRNP-R-Q heterogene 99.6 2.9E-15 6.2E-20 129.0 10.6 74 62-143 231-306 (578)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.6 5.3E-15 1.1E-19 125.0 11.8 78 62-141 293-372 (509)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 4.7E-15 1E-19 125.6 11.1 79 63-143 95-173 (481)
26 KOG0114 Predicted RNA-binding 99.6 7.1E-15 1.5E-19 100.3 9.8 76 62-140 16-91 (124)
27 TIGR01622 SF-CC1 splicing fact 99.6 4.2E-15 9.1E-20 124.2 10.7 76 64-141 186-263 (457)
28 TIGR01628 PABP-1234 polyadenyl 99.6 5.8E-15 1.3E-19 126.6 11.1 79 62-142 283-362 (562)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 4.4E-15 9.5E-20 125.7 10.1 73 64-142 2-76 (481)
30 TIGR01622 SF-CC1 splicing fact 99.6 9.5E-15 2E-19 122.1 10.9 78 62-142 87-166 (457)
31 KOG0126 Predicted RNA-binding 99.6 2E-16 4.3E-21 117.4 0.4 78 62-141 33-112 (219)
32 KOG0149 Predicted RNA-binding 99.6 5.1E-15 1.1E-19 113.5 8.0 64 62-125 10-75 (247)
33 COG0724 RNA-binding proteins ( 99.6 1.8E-14 3.8E-19 109.0 9.9 76 64-141 115-192 (306)
34 KOG0148 Apoptosis-promoting RN 99.6 1.4E-14 2.9E-19 113.3 9.3 76 61-142 161-236 (321)
35 KOG0145 RNA-binding protein EL 99.6 1.1E-14 2.4E-19 113.5 8.4 77 64-142 41-119 (360)
36 cd00590 RRM RRM (RNA recogniti 99.6 7.2E-14 1.6E-18 86.8 10.0 73 66-140 1-74 (74)
37 smart00360 RRM RNA recognition 99.6 4.5E-14 9.7E-19 86.9 8.7 69 69-139 1-71 (71)
38 KOG0109 RNA-binding protein LA 99.5 5.7E-15 1.2E-19 116.3 5.4 69 66-142 4-72 (346)
39 KOG0111 Cyclophilin-type pepti 99.5 5.5E-15 1.2E-19 112.8 4.7 82 61-144 7-90 (298)
40 PF13893 RRM_5: RNA recognitio 99.5 7E-14 1.5E-18 85.3 8.2 56 81-141 1-56 (56)
41 KOG0108 mRNA cleavage and poly 99.5 2.8E-14 6.1E-19 119.1 8.3 76 65-142 19-96 (435)
42 KOG0117 Heterogeneous nuclear 99.5 5.3E-14 1.2E-18 116.0 9.2 79 64-143 83-163 (506)
43 KOG0117 Heterogeneous nuclear 99.5 3.6E-14 7.8E-19 117.0 7.9 73 62-142 257-329 (506)
44 KOG0130 RNA-binding protein RB 99.5 4.7E-14 1E-18 100.5 6.8 79 62-142 70-150 (170)
45 KOG0144 RNA-binding protein CU 99.5 2.4E-14 5.2E-19 117.7 5.6 79 63-141 123-203 (510)
46 KOG4207 Predicted splicing fac 99.5 4.4E-14 9.5E-19 106.9 6.4 79 61-141 10-90 (256)
47 KOG0131 Splicing factor 3b, su 99.5 1.2E-13 2.5E-18 102.7 6.7 80 60-141 5-86 (203)
48 KOG0144 RNA-binding protein CU 99.4 3.4E-13 7.3E-18 111.0 8.8 80 62-141 32-114 (510)
49 KOG0148 Apoptosis-promoting RN 99.4 2.9E-13 6.3E-18 105.9 7.0 77 64-142 62-140 (321)
50 KOG0127 Nucleolar protein fibr 99.4 7.3E-13 1.6E-17 111.7 8.5 78 64-143 117-195 (678)
51 TIGR01642 U2AF_lg U2 snRNP aux 99.4 1.6E-12 3.6E-17 109.8 9.1 73 61-140 172-256 (509)
52 KOG0415 Predicted peptidyl pro 99.4 6.9E-13 1.5E-17 107.2 6.0 77 65-143 240-318 (479)
53 smart00361 RRM_1 RNA recogniti 99.4 2.7E-12 5.9E-17 81.9 7.6 59 78-138 2-69 (70)
54 KOG0145 RNA-binding protein EL 99.3 7.8E-12 1.7E-16 97.7 10.0 78 62-141 276-355 (360)
55 KOG0147 Transcriptional coacti 99.3 1.8E-12 3.9E-17 109.1 6.3 73 66-140 280-354 (549)
56 KOG0123 Polyadenylate-binding 99.3 5.9E-12 1.3E-16 103.7 8.8 70 66-138 78-147 (369)
57 KOG4206 Spliceosomal protein s 99.3 6.6E-12 1.4E-16 95.8 8.2 76 64-142 9-88 (221)
58 KOG0132 RNA polymerase II C-te 99.3 4.2E-12 9.1E-17 110.4 8.0 74 64-143 421-494 (894)
59 KOG0127 Nucleolar protein fibr 99.3 7.8E-12 1.7E-16 105.6 9.3 80 61-142 289-376 (678)
60 KOG0153 Predicted RNA-binding 99.3 1.2E-11 2.6E-16 99.5 7.9 78 60-142 224-301 (377)
61 KOG0123 Polyadenylate-binding 99.3 1.2E-11 2.7E-16 101.8 8.2 72 65-142 2-73 (369)
62 KOG0146 RNA-binding protein ET 99.3 1.4E-11 3E-16 96.7 7.3 79 63-141 18-98 (371)
63 KOG0109 RNA-binding protein LA 99.3 6.9E-12 1.5E-16 99.1 5.4 73 62-142 76-148 (346)
64 KOG0110 RNA-binding protein (R 99.2 4.1E-11 8.8E-16 103.5 8.1 74 67-142 518-596 (725)
65 KOG1457 RNA binding protein (c 99.2 2.7E-11 5.9E-16 92.8 4.3 67 61-129 207-273 (284)
66 KOG0124 Polypyrimidine tract-b 99.1 4.2E-11 9E-16 97.4 4.8 73 65-139 114-188 (544)
67 KOG4661 Hsp27-ERE-TATA-binding 99.1 1E-10 2.2E-15 99.5 7.4 77 63-141 404-482 (940)
68 KOG0146 RNA-binding protein ET 99.1 5.6E-11 1.2E-15 93.3 5.2 76 62-139 283-360 (371)
69 KOG4212 RNA-binding protein hn 99.1 1.8E-10 3.9E-15 95.4 8.4 75 63-139 43-119 (608)
70 KOG0131 Splicing factor 3b, su 99.1 1.9E-10 4.1E-15 85.6 6.5 77 63-141 95-174 (203)
71 KOG4208 Nucleolar RNA-binding 99.1 5.6E-10 1.2E-14 84.4 8.3 75 64-140 49-126 (214)
72 KOG4454 RNA binding protein (R 99.1 5.3E-11 1.1E-15 91.0 2.5 69 62-130 7-75 (267)
73 KOG0116 RasGAP SH3 binding pro 99.1 4E-10 8.6E-15 94.0 7.3 78 60-140 284-363 (419)
74 KOG0124 Polypyrimidine tract-b 99.0 5.6E-10 1.2E-14 90.9 7.1 78 63-142 209-288 (544)
75 KOG0151 Predicted splicing reg 99.0 5.2E-10 1.1E-14 96.9 6.6 81 62-144 172-257 (877)
76 KOG4660 Protein Mei2, essentia 99.0 5E-10 1.1E-14 94.7 4.7 70 58-130 69-138 (549)
77 KOG0106 Alternative splicing f 99.0 4.1E-10 9E-15 86.3 3.8 70 65-142 2-71 (216)
78 KOG0533 RRM motif-containing p 99.0 3.3E-09 7.2E-14 82.8 8.5 74 65-140 84-158 (243)
79 KOG0110 RNA-binding protein (R 98.9 8.5E-10 1.9E-14 95.4 4.7 79 62-142 611-691 (725)
80 KOG4212 RNA-binding protein hn 98.9 2.4E-09 5.3E-14 88.8 7.2 73 63-140 535-607 (608)
81 KOG0226 RNA-binding proteins [ 98.8 4.7E-09 1E-13 81.8 5.2 73 64-138 190-264 (290)
82 KOG4205 RNA-binding protein mu 98.8 3.9E-09 8.5E-14 85.1 4.8 61 63-123 5-67 (311)
83 KOG4209 Splicing factor RNPS1, 98.8 1.8E-08 3.9E-13 78.3 6.2 79 61-142 98-178 (231)
84 KOG1548 Transcription elongati 98.7 7.9E-08 1.7E-12 77.7 8.9 75 64-140 134-217 (382)
85 KOG4205 RNA-binding protein mu 98.7 2.1E-08 4.5E-13 81.0 5.3 58 64-121 97-156 (311)
86 KOG4206 Spliceosomal protein s 98.6 3.4E-07 7.4E-12 70.1 8.1 77 62-142 144-220 (221)
87 KOG1190 Polypyrimidine tract-b 98.6 3.6E-07 7.9E-12 75.4 8.5 74 64-142 297-371 (492)
88 PF11608 Limkain-b1: Limkain b 98.5 1.3E-06 2.9E-11 57.7 8.4 67 65-141 3-74 (90)
89 KOG1190 Polypyrimidine tract-b 98.4 7.3E-07 1.6E-11 73.7 5.9 77 64-142 150-226 (492)
90 PF08777 RRM_3: RNA binding mo 98.3 4E-06 8.6E-11 57.7 6.9 58 66-127 3-60 (105)
91 KOG0147 Transcriptional coacti 98.3 2.9E-07 6.4E-12 78.0 1.4 79 61-142 176-256 (549)
92 KOG0120 Splicing factor U2AF, 98.2 1.6E-06 3.4E-11 73.8 5.5 77 61-139 286-364 (500)
93 PF04059 RRM_2: RNA recognitio 98.2 2.5E-05 5.3E-10 53.1 9.9 76 65-140 2-83 (97)
94 KOG0106 Alternative splicing f 98.2 1.1E-06 2.4E-11 67.6 3.6 72 61-140 96-167 (216)
95 COG5175 MOT2 Transcriptional r 98.2 3.6E-06 7.8E-11 68.3 6.6 74 64-141 114-200 (480)
96 KOG4211 Splicing factor hnRNP- 98.1 1.5E-05 3.3E-10 67.1 7.8 65 63-129 9-73 (510)
97 PF14605 Nup35_RRM_2: Nup53/35 98.0 2E-05 4.3E-10 47.7 5.5 52 65-121 2-53 (53)
98 KOG2314 Translation initiation 98.0 2.5E-05 5.4E-10 67.0 7.7 74 65-139 59-139 (698)
99 KOG1995 Conserved Zn-finger pr 97.9 2E-05 4.4E-10 64.1 6.0 77 61-139 63-149 (351)
100 KOG4307 RNA binding protein RB 97.9 5.1E-05 1.1E-09 66.5 8.5 77 61-139 864-942 (944)
101 KOG2193 IGF-II mRNA-binding pr 97.9 1.3E-05 2.8E-10 66.8 4.2 74 65-143 2-75 (584)
102 KOG4210 Nuclear localization s 97.9 1.1E-05 2.4E-10 64.6 3.1 75 64-141 184-261 (285)
103 KOG1855 Predicted RNA-binding 97.8 2.9E-05 6.4E-10 64.6 4.5 66 62-127 229-309 (484)
104 KOG3152 TBP-binding protein, a 97.8 2.1E-05 4.5E-10 61.6 3.1 67 65-131 75-155 (278)
105 KOG0112 Large RNA-binding prot 97.7 5.7E-05 1.2E-09 67.6 5.6 77 61-141 452-528 (975)
106 KOG0129 Predicted RNA-binding 97.7 0.00011 2.3E-09 62.4 6.9 63 61-123 367-432 (520)
107 KOG1456 Heterogeneous nuclear 97.7 0.00019 4.2E-09 59.1 7.9 72 69-143 127-198 (494)
108 KOG0112 Large RNA-binding prot 97.7 9.2E-06 2E-10 72.5 0.3 70 61-130 369-439 (975)
109 KOG0120 Splicing factor U2AF, 97.6 0.00018 4E-09 61.4 7.3 58 81-140 426-488 (500)
110 KOG2416 Acinus (induces apopto 97.5 0.00012 2.6E-09 63.3 4.8 77 62-142 442-520 (718)
111 KOG4211 Splicing factor hnRNP- 97.5 0.0003 6.6E-09 59.5 6.9 60 64-123 103-164 (510)
112 KOG0129 Predicted RNA-binding 97.5 0.0002 4.3E-09 60.9 5.8 60 64-123 259-325 (520)
113 KOG1456 Heterogeneous nuclear 97.5 0.0016 3.5E-08 53.8 10.7 76 62-142 285-361 (494)
114 PF07576 BRAP2: BRCA1-associat 97.4 0.0026 5.7E-08 44.1 9.3 69 61-129 10-79 (110)
115 KOG1548 Transcription elongati 97.4 0.00083 1.8E-08 54.8 7.4 74 63-140 264-348 (382)
116 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0015 3.3E-08 44.6 7.3 75 64-141 6-89 (100)
117 PF03467 Smg4_UPF3: Smg-4/UPF3 97.3 0.00092 2E-08 50.0 6.4 79 63-141 6-95 (176)
118 KOG1996 mRNA splicing factor [ 97.2 0.0012 2.6E-08 53.0 6.9 61 78-140 300-363 (378)
119 KOG0105 Alternative splicing f 97.2 0.0039 8.4E-08 47.2 8.6 67 64-135 115-181 (241)
120 KOG2202 U2 snRNP splicing fact 97.1 0.00031 6.7E-09 55.1 2.0 54 87-142 92-146 (260)
121 KOG2253 U1 snRNP complex, subu 97.0 0.0013 2.9E-08 57.4 5.8 69 63-138 39-107 (668)
122 PF08952 DUF1866: Domain of un 97.0 0.0025 5.4E-08 46.3 6.3 51 80-139 52-102 (146)
123 KOG4676 Splicing factor, argin 97.0 0.0011 2.3E-08 55.0 4.7 65 64-129 7-76 (479)
124 PF10309 DUF2414: Protein of u 97.0 0.0048 1E-07 38.5 6.6 54 65-124 6-62 (62)
125 KOG0115 RNA-binding protein p5 96.9 0.001 2.2E-08 52.3 3.8 61 65-125 32-93 (275)
126 KOG2068 MOT2 transcription fac 96.8 0.00057 1.2E-08 55.4 1.3 74 65-140 78-159 (327)
127 PF08675 RNA_bind: RNA binding 96.7 0.014 3E-07 38.7 7.2 54 65-125 10-63 (87)
128 KOG4849 mRNA cleavage factor I 96.6 0.0023 5.1E-08 52.5 3.8 67 65-131 81-151 (498)
129 KOG2591 c-Mpl binding protein, 96.6 0.01 2.2E-07 51.4 7.7 55 66-125 177-233 (684)
130 PF15023 DUF4523: Protein of u 96.5 0.018 3.9E-07 41.9 7.4 71 63-141 85-159 (166)
131 KOG0128 RNA-binding protein SA 96.5 0.0014 3E-08 58.7 1.6 73 65-137 737-810 (881)
132 PF04847 Calcipressin: Calcipr 96.4 0.0086 1.9E-07 45.2 5.7 60 77-142 8-69 (184)
133 KOG1365 RNA-binding protein Fu 96.3 0.036 7.8E-07 46.2 8.9 62 62-123 159-225 (508)
134 KOG1365 RNA-binding protein Fu 96.2 0.009 1.9E-07 49.7 5.2 73 64-138 280-356 (508)
135 KOG0128 RNA-binding protein SA 96.0 0.00046 1E-08 61.7 -3.7 65 65-129 668-734 (881)
136 KOG4574 RNA-binding protein (c 95.8 0.0068 1.5E-07 54.5 2.8 74 66-143 300-373 (1007)
137 KOG0804 Cytoplasmic Zn-finger 95.7 0.046 9.9E-07 46.3 6.9 66 64-129 74-140 (493)
138 KOG4285 Mitotic phosphoprotein 95.6 0.024 5.3E-07 45.7 5.1 56 69-130 202-257 (350)
139 PF11767 SET_assoc: Histone ly 95.4 0.06 1.3E-06 34.0 5.3 48 75-129 11-58 (66)
140 PF03880 DbpA: DbpA RNA bindin 95.3 0.13 2.8E-06 32.8 6.7 66 66-140 2-73 (74)
141 KOG2318 Uncharacterized conser 95.2 0.12 2.7E-06 44.9 8.3 79 62-140 172-304 (650)
142 KOG2135 Proteins containing th 95.2 0.011 2.5E-07 50.1 1.9 58 77-141 386-443 (526)
143 KOG4307 RNA binding protein RB 95.1 0.016 3.6E-07 51.3 2.8 77 62-140 432-510 (944)
144 KOG4410 5-formyltetrahydrofola 93.9 0.26 5.6E-06 39.8 6.7 58 65-125 331-395 (396)
145 KOG4210 Nuclear localization s 92.6 0.071 1.5E-06 42.8 1.8 64 62-125 86-151 (285)
146 KOG4454 RNA binding protein (R 91.8 0.042 9.1E-07 42.7 -0.3 71 59-129 75-150 (267)
147 KOG4660 Protein Mei2, essentia 91.5 0.53 1.1E-05 40.8 5.9 65 65-129 362-456 (549)
148 KOG4676 Splicing factor, argin 90.4 0.057 1.2E-06 45.1 -0.9 63 64-129 151-213 (479)
149 COG5178 PRP8 U5 snRNP spliceos 87.1 0.52 1.1E-05 44.7 2.8 37 64-100 72-108 (2365)
150 KOG2193 IGF-II mRNA-binding pr 86.5 0.029 6.2E-07 47.3 -5.0 75 63-140 79-153 (584)
151 KOG2891 Surface glycoprotein [ 85.7 0.31 6.7E-06 39.3 0.6 65 65-129 150-247 (445)
152 KOG2295 C2H2 Zn-finger protein 84.2 0.2 4.4E-06 43.5 -1.1 66 65-130 232-299 (648)
153 PF08544 GHMP_kinases_C: GHMP 84.1 5.5 0.00012 25.0 5.9 44 79-125 37-80 (85)
154 PHA01732 proline-rich protein 83.6 2.6 5.5E-05 28.0 4.1 15 85-99 58-72 (94)
155 PF09707 Cas_Cas2CT1978: CRISP 83.1 2.7 5.9E-05 27.8 4.1 47 65-112 26-72 (86)
156 KOG3671 Actin regulatory prote 81.9 14 0.00031 32.1 8.9 32 64-95 481-512 (569)
157 PF10567 Nab6_mRNP_bdg: RNA-re 80.0 5 0.00011 32.5 5.4 56 63-118 14-78 (309)
158 COG0724 RNA-binding proteins ( 79.6 3.6 7.8E-05 30.4 4.4 65 61-125 222-288 (306)
159 KOG4483 Uncharacterized conser 76.9 7.1 0.00015 33.1 5.5 55 64-122 391-445 (528)
160 PRK11558 putative ssRNA endonu 76.8 4.7 0.0001 27.3 3.7 49 65-114 28-76 (97)
161 PF03468 XS: XS domain; Inter 76.7 2.2 4.7E-05 29.8 2.2 39 76-115 29-67 (116)
162 PF07292 NID: Nmi/IFP 35 domai 76.0 4.7 0.0001 26.8 3.6 24 62-85 50-73 (88)
163 PF15513 DUF4651: Domain of un 75.9 7.3 0.00016 24.2 4.1 18 79-96 9-26 (62)
164 PF14893 PNMA: PNMA 75.5 4.2 9.2E-05 33.4 3.9 53 62-114 16-72 (331)
165 COG5638 Uncharacterized conser 75.0 15 0.00033 31.4 7.0 35 106-140 260-294 (622)
166 COG5353 Uncharacterized protei 74.8 17 0.00036 26.7 6.4 51 65-115 88-153 (161)
167 PF11411 DNA_ligase_IV: DNA li 72.9 2.8 6E-05 23.3 1.5 17 74-90 19-35 (36)
168 KOG4019 Calcineurin-mediated s 72.8 3.4 7.4E-05 31.2 2.5 63 64-130 10-77 (193)
169 PF00403 HMA: Heavy-metal-asso 71.4 18 0.0004 21.3 6.0 54 66-123 1-58 (62)
170 TIGR01873 cas_CT1978 CRISPR-as 67.1 10 0.00022 25.2 3.6 48 65-113 26-74 (87)
171 COG3254 Uncharacterized conser 64.7 24 0.00053 24.2 5.1 41 80-121 28-68 (105)
172 KOG4008 rRNA processing protei 59.6 7.1 0.00015 30.7 2.0 36 61-96 37-72 (261)
173 KOG1295 Nonsense-mediated deca 58.5 16 0.00035 30.5 4.1 70 64-133 7-82 (376)
174 PRK11230 glycolate oxidase sub 52.2 58 0.0013 28.1 6.6 61 66-126 191-256 (499)
175 PRK11901 hypothetical protein; 51.5 1.4E+02 0.003 24.7 8.6 60 63-126 244-306 (327)
176 PF15063 TC1: Thyroid cancer p 49.2 11 0.00023 24.4 1.3 28 64-91 25-52 (79)
177 COG2608 CopZ Copper chaperone 45.9 71 0.0015 19.8 5.5 45 65-113 4-48 (71)
178 PF07530 PRE_C2HC: Associated 45.5 42 0.00091 21.0 3.6 57 79-140 2-61 (68)
179 KOG1923 Rac1 GTPase effector F 45.5 53 0.0012 30.2 5.4 7 80-86 405-411 (830)
180 PF11823 DUF3343: Protein of u 44.2 32 0.0007 21.4 3.0 24 106-129 3-26 (73)
181 PF08156 NOP5NT: NOP5NT (NUC12 42.6 8 0.00017 24.2 -0.1 38 79-125 27-65 (67)
182 TIGR02542 B_forsyth_147 Bacter 42.2 11 0.00023 26.6 0.5 44 73-116 83-131 (145)
183 PF07237 DUF1428: Protein of u 41.7 1.1E+02 0.0024 20.9 6.2 45 81-125 25-86 (103)
184 PF10905 DUF2695: Protein of u 40.1 36 0.00077 20.4 2.5 25 75-99 29-53 (53)
185 KOG2187 tRNA uracil-5-methyltr 39.1 26 0.00057 30.6 2.5 24 106-129 65-88 (534)
186 PRK12450 foldase protein PrsA; 39.0 79 0.0017 25.5 5.2 43 75-129 132-176 (309)
187 PF13193 AMP-binding_C: AMP-bi 38.4 91 0.002 18.9 5.4 49 80-129 1-53 (73)
188 PF12481 DUF3700: Aluminium in 38.4 25 0.00053 27.5 2.0 14 60-73 73-86 (228)
189 PF15407 Spo7_2_N: Sporulation 38.1 11 0.00024 23.7 0.1 27 61-87 24-50 (67)
190 COG5227 SMT3 Ubiquitin-like pr 37.6 1.1E+02 0.0024 20.6 4.7 65 62-127 32-101 (103)
191 KOG3432 Vacuolar H+-ATPase V1 37.4 41 0.00088 23.4 2.8 24 74-97 43-66 (121)
192 KOG4213 RNA-binding protein La 37.3 68 0.0015 24.4 4.2 54 65-123 112-169 (205)
193 PF13820 Nucleic_acid_bd: Puta 37.3 66 0.0014 23.4 4.0 60 65-126 5-67 (149)
194 PF13046 DUF3906: Protein of u 36.8 52 0.0011 20.6 2.9 33 77-109 31-63 (64)
195 PF07876 Dabb: Stress responsi 36.3 1.1E+02 0.0025 19.3 6.8 52 67-118 4-68 (97)
196 PRK00343 ipk 4-diphosphocytidy 36.2 92 0.002 24.5 5.1 39 80-125 222-260 (271)
197 PF05336 DUF718: Domain of unk 35.8 89 0.0019 21.1 4.3 33 80-113 27-59 (106)
198 cd00027 BRCT Breast Cancer Sup 35.7 69 0.0015 18.1 3.5 46 66-117 3-48 (72)
199 PF00398 RrnaAD: Ribosomal RNA 35.7 33 0.00072 26.7 2.5 28 64-91 97-126 (262)
200 TIGR00387 glcD glycolate oxida 35.7 1.3E+02 0.0029 25.0 6.2 51 75-125 143-198 (413)
201 PF14026 DUF4242: Protein of u 35.7 1.2E+02 0.0025 19.3 8.4 60 69-129 5-71 (77)
202 smart00457 MACPF membrane-atta 35.5 65 0.0014 23.8 3.9 22 69-90 30-51 (194)
203 PF08199 E2: Bacteriophage E2- 35.2 4.4 9.6E-05 21.9 -1.8 29 82-110 4-33 (37)
204 PRK14548 50S ribosomal protein 34.9 1.3E+02 0.0028 19.6 5.4 55 67-122 23-79 (84)
205 COG0030 KsgA Dimethyladenosine 34.7 66 0.0014 25.6 4.0 33 65-97 96-128 (259)
206 cd04904 ACT_AAAH ACT domain of 34.0 1.2E+02 0.0025 18.8 5.5 48 79-126 15-65 (74)
207 PF14111 DUF4283: Domain of un 33.4 47 0.001 23.1 2.7 42 68-109 108-150 (153)
208 KOG2855 Ribokinase [Carbohydra 33.2 63 0.0014 26.7 3.7 29 61-89 58-86 (330)
209 COG5507 Uncharacterized conser 32.2 51 0.0011 22.6 2.5 19 106-124 68-86 (117)
210 PRK10905 cell division protein 31.8 92 0.002 25.7 4.4 59 63-125 246-307 (328)
211 PF07683 CobW_C: Cobalamin syn 30.6 43 0.00093 21.3 2.0 25 61-88 69-93 (94)
212 TIGR03636 L23_arch archaeal ri 30.0 1.5E+02 0.0033 19.0 5.5 55 67-122 16-72 (77)
213 KOG1546 Metacaspase involved i 29.9 3.3E+02 0.0072 22.7 9.2 38 63-101 63-112 (362)
214 PHA03075 glutaredoxin-like pro 28.7 1.2E+02 0.0025 21.4 3.9 33 80-113 58-90 (123)
215 TIGR00755 ksgA dimethyladenosi 28.6 77 0.0017 24.4 3.5 25 66-90 96-120 (253)
216 smart00596 PRE_C2HC PRE_C2HC d 28.6 1.1E+02 0.0023 19.5 3.4 56 79-139 2-60 (69)
217 TIGR03047 PS_II_psb28 photosys 28.6 1.1E+02 0.0023 21.2 3.7 44 91-134 12-59 (109)
218 PRK08655 prephenate dehydrogen 28.4 2E+02 0.0042 24.4 6.1 56 72-127 369-431 (437)
219 PLN02805 D-lactate dehydrogena 28.2 2.1E+02 0.0045 25.2 6.4 50 76-125 278-332 (555)
220 KOG0156 Cytochrome P450 CYP2 s 27.7 1.6E+02 0.0035 25.4 5.5 58 68-133 36-96 (489)
221 PHA03247 large tegument protei 27.7 2.8E+02 0.0061 29.7 7.6 10 69-78 3001-3010(3151)
222 cd06398 PB1_Joka2 The PB1 doma 27.7 1.9E+02 0.004 19.1 6.5 59 75-141 24-87 (91)
223 PLN00039 photosystem II reacti 27.5 70 0.0015 22.2 2.6 44 91-134 14-60 (111)
224 PRK00274 ksgA 16S ribosomal RN 27.5 85 0.0018 24.6 3.5 31 66-96 107-137 (272)
225 cd04485 DnaE_OBF DnaE_OBF: A s 27.0 80 0.0017 18.9 2.8 24 89-113 4-27 (84)
226 PF14191 YodL: YodL-like 27.0 2.1E+02 0.0045 19.5 4.9 28 60-87 34-61 (103)
227 PF09162 Tap-RNA_bind: Tap, RN 27.0 90 0.0019 20.7 3.0 32 107-138 46-77 (88)
228 PF01823 MACPF: MAC/Perforin d 26.8 71 0.0015 23.3 2.9 28 69-96 53-83 (212)
229 PRK04405 prsA peptidylprolyl i 26.7 1.6E+02 0.0035 23.6 5.0 40 75-126 128-167 (298)
230 smart00833 CobW_C Cobalamin sy 26.5 1E+02 0.0022 19.4 3.2 23 63-88 69-91 (92)
231 PHA03048 IMV membrane protein; 26.4 5.5 0.00012 26.6 -2.8 22 106-127 28-49 (93)
232 KOG1925 Rac1 GTPase effector F 26.3 2.2E+02 0.0048 25.4 5.9 24 64-87 306-329 (817)
233 PF01984 dsDNA_bind: Double-st 25.8 40 0.00087 23.1 1.2 21 70-90 75-95 (107)
234 cd04889 ACT_PDH-BS-like C-term 25.7 1.4E+02 0.0029 16.9 5.7 41 80-121 14-55 (56)
235 CHL00128 psbW photosystem II p 25.6 1.3E+02 0.0027 21.0 3.6 44 91-134 15-62 (113)
236 COG0002 ArgC Acetylglutamate s 25.3 2.2E+02 0.0047 23.8 5.6 49 66-115 248-304 (349)
237 smart00650 rADc Ribosomal RNA 25.3 1.2E+02 0.0027 21.5 3.9 23 66-88 79-101 (169)
238 TIGR01851 argC_other N-acetyl- 24.7 3.4E+02 0.0073 22.2 6.6 24 65-88 211-236 (310)
239 KOG2671 Putative RNA methylase 24.7 99 0.0022 26.1 3.5 45 75-121 13-57 (421)
240 PRK14615 4-diphosphocytidyl-2- 24.4 2E+02 0.0043 22.9 5.2 42 80-126 245-286 (296)
241 PF12993 DUF3877: Domain of un 24.3 1.3E+02 0.0027 22.6 3.6 21 74-94 107-127 (175)
242 TIGR00137 gid_trmFO tRNA:m(5)U 24.3 1.6E+02 0.0035 25.1 4.8 39 60-98 266-304 (433)
243 KOG4840 Predicted hydrolases o 24.3 1.4E+02 0.003 23.8 4.1 75 63-142 36-116 (299)
244 KOG4365 Uncharacterized conser 24.1 41 0.00089 29.0 1.2 60 65-125 4-65 (572)
245 cd04905 ACT_CM-PDT C-terminal 24.0 1.8E+02 0.004 17.9 5.9 48 79-126 16-68 (80)
246 PF01690 PLRV_ORF5: Potato lea 24.0 1.2E+02 0.0026 26.3 3.9 10 106-115 125-134 (465)
247 TIGR01639 P_fal_TIGR01639 Plas 23.6 27 0.00059 21.3 0.0 23 71-93 5-27 (61)
248 PRK13610 photosystem II reacti 23.4 1.1E+02 0.0024 21.2 3.1 44 91-134 21-66 (113)
249 PF13145 Rotamase_2: PPIC-type 23.3 99 0.0021 19.9 2.8 13 76-88 1-13 (121)
250 PRK10560 hofQ outer membrane p 23.2 1.2E+02 0.0026 25.2 3.8 20 80-99 6-25 (386)
251 PRK00642 inorganic pyrophospha 23.2 1.2E+02 0.0027 23.2 3.6 39 79-124 158-196 (205)
252 COG5193 LHP1 La protein, small 23.2 39 0.00085 28.7 0.9 58 64-121 174-243 (438)
253 PF12631 GTPase_Cys_C: Catalyt 23.2 69 0.0015 20.0 1.9 15 74-88 58-72 (73)
254 PF14270 DUF4358: Domain of un 23.2 2E+02 0.0043 19.0 4.3 51 75-125 14-67 (106)
255 PHA02898 virion envelope prote 22.8 10 0.00022 25.2 -2.0 22 106-127 28-50 (92)
256 KOG0226 RNA-binding proteins [ 22.8 30 0.00065 27.7 0.2 68 62-129 94-165 (290)
257 PF01071 GARS_A: Phosphoribosy 22.7 3.5E+02 0.0075 20.5 6.1 62 77-140 25-87 (194)
258 cd04880 ACT_AAAH-PDT-like ACT 22.6 1.9E+02 0.0041 17.5 6.2 48 79-126 14-66 (75)
259 TIGR01033 DNA-binding regulato 22.4 2.3E+02 0.0049 22.2 5.0 41 67-112 97-143 (238)
260 COG3588 Fructose-1,6-bisphosph 22.2 1.4E+02 0.003 24.5 3.8 58 74-144 235-293 (332)
261 COG5470 Uncharacterized conser 22.2 2.5E+02 0.0054 19.0 4.4 41 81-121 25-70 (96)
262 PTZ00338 dimethyladenosine tra 22.2 1.1E+02 0.0024 24.5 3.3 28 66-93 103-130 (294)
263 COG5594 Uncharacterized integr 22.0 75 0.0016 29.4 2.5 29 62-90 206-235 (827)
264 KOG1205 Predicted dehydrogenas 21.9 1.5E+02 0.0032 23.9 3.9 43 76-121 73-119 (282)
265 PF12324 HTH_15: Helix-turn-he 21.9 98 0.0021 20.0 2.4 26 112-137 50-75 (77)
266 KOG4849 mRNA cleavage factor I 21.8 1.6E+02 0.0035 24.8 4.2 28 69-96 350-377 (498)
267 PF14112 DUF4284: Domain of un 21.6 98 0.0021 21.5 2.6 18 66-86 3-20 (122)
268 PF07230 Peptidase_S80: Bacter 21.3 1E+02 0.0022 27.0 3.0 25 65-89 276-303 (501)
269 PRK14610 4-diphosphocytidyl-2- 21.2 2.5E+02 0.0055 22.2 5.2 22 105-126 248-269 (283)
270 PF10087 DUF2325: Uncharacteri 20.7 2.5E+02 0.0054 18.1 7.2 57 66-125 2-72 (97)
271 TIGR02625 YiiL_rotase L-rhamno 20.7 2.8E+02 0.006 18.7 4.6 36 80-116 26-61 (102)
272 PRK01326 prsA foldase protein 20.6 87 0.0019 25.2 2.4 44 74-129 128-173 (310)
273 PF03912 Psb28: Psb28 protein; 20.4 75 0.0016 22.0 1.7 41 93-133 14-58 (108)
274 cd06257 DnaJ DnaJ domain or J- 20.4 98 0.0021 17.3 2.1 18 71-88 7-24 (55)
275 PF08734 GYD: GYD domain; Int 20.2 2.6E+02 0.0057 18.2 6.6 46 78-125 22-68 (91)
276 PRK00110 hypothetical protein; 20.1 2.3E+02 0.005 22.3 4.6 41 67-112 97-143 (245)
277 PHA01632 hypothetical protein 20.1 1.1E+02 0.0023 18.7 2.1 18 69-86 21-38 (64)
278 PLN02707 Soluble inorganic pyr 20.0 91 0.002 25.0 2.3 40 79-125 208-248 (267)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=1.3e-19 Score=131.31 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||+++++|++|+++|++||.|++|+++.++.++ ++||||+|++.++|++|++.|||..|+ |+.|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~--Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN--GRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEE
Confidence 3456789999999999999999999999999999999886544 449999999999999999999999995 889999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|..
T Consensus 109 ~~a~ 112 (144)
T PLN03134 109 NPAN 112 (144)
T ss_pred EeCC
Confidence 9874
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=3.6e-18 Score=137.94 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
..+++|||+||+.++++++|+++|++||.|++|+|+++..+ .++||||+|++.++|.+|++.|||..|+ |+.|+|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~--gr~i~V~ 344 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG--NRVLQVS 344 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEE
Confidence 45668999999999999999999999999999999988533 4459999999999999999999999995 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|..
T Consensus 345 ~~~ 347 (352)
T TIGR01661 345 FKT 347 (352)
T ss_pred Ecc
Confidence 963
No 3
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.77 E-value=2e-18 Score=108.45 Aligned_cols=69 Identities=28% Similarity=0.433 Sum_probs=61.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeec-CCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 67 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~-~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
|||+|||.++++++|+++|++||.+..+.+..+ .+..++||||+|++.++|++|++.|||..+. |+.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~--~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN--GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC--ccCcC
Confidence 799999999999999999999999999999886 3333449999999999999999999999994 77765
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=4.6e-18 Score=137.35 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=70.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...+|||+|||.+++|++|+++|++||.|.+|+|++++.++ ++||||+|.+.++|++|++.|||..|. |+.|+|+|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~--g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ--NKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC--CeeEEEEe
Confidence 35789999999999999999999999999999999886543 449999999999999999999999994 88899988
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 80 a~ 81 (352)
T TIGR01661 80 AR 81 (352)
T ss_pred ec
Confidence 64
No 5
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=8.2e-18 Score=129.43 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=75.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
..++..||-|.||+++++|++|++||..||.|..|.|.+|+.++.+ ||||+|+++++|.+||+.|||.-++ ..+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd--~LILr 262 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD--NLILR 262 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc--eEEEE
Confidence 4456778999999999999999999999999999999999877655 9999999999999999999999996 88999
Q ss_pred EEeecC
Q 032280 138 FPHSMA 143 (144)
Q Consensus 138 v~~s~~ 143 (144)
||||..
T Consensus 263 vEwskP 268 (270)
T KOG0122|consen 263 VEWSKP 268 (270)
T ss_pred EEecCC
Confidence 999974
No 6
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3e-18 Score=120.76 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=70.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
.+.|||||||++.++|++|.+||+++|.|..|.+-.|+-++.+ ||||+|.+.++|+.|++.+||+.++ .+.|+|+|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd--dr~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD--DRPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc--ccceeeec
Confidence 4679999999999999999999999999999999888655544 9999999999999999999999996 78899998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 64
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=9.8e-18 Score=136.85 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||++++||++|+++|++||.|++|+|+.+..++ ++||||+|.|.++|++|++.|||..+. ++.|+|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~--gr~i~V~ 182 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR--NKRLKVS 182 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC--Cceeeee
Confidence 356799999999999999999999999999999999885543 349999999999999999999999994 7889998
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 183 ~a~ 185 (346)
T TIGR01659 183 YAR 185 (346)
T ss_pred ccc
Confidence 864
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=1.2e-17 Score=132.94 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 59 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
...+.-++|+|+|||+...|-||+.+|++||.|.+|+|+.+.+++++||||+|++.+||++|.++|+|+.+. |++|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE--GRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE--GRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee--ceEEEE
Confidence 344566899999999999999999999999999999999999988899999999999999999999999994 888888
Q ss_pred Eee
Q 032280 139 PHS 141 (144)
Q Consensus 139 ~~s 141 (144)
...
T Consensus 169 n~A 171 (376)
T KOG0125|consen 169 NNA 171 (376)
T ss_pred ecc
Confidence 754
No 9
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.73 E-value=3.5e-17 Score=127.97 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=68.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
.++||||||+++++|++|+++|+.||.|++|+|.+++.. ++||||+|++.++|+.|+ .|||..|. |+.|+|+++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~-~GfAFVtF~d~eaAe~Al-lLnG~~l~--gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENER-SQIAYVTFKDPQGAETAL-LLSGATIV--DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-CCEEEEEeCcHHHHHHHH-HhcCCeeC--CceEEEEecc
Confidence 689999999999999999999999999999999887643 349999999999999999 59999994 8889998764
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=8.8e-17 Score=131.25 Aligned_cols=79 Identities=20% Similarity=0.337 Sum_probs=70.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
.++|||+||+.+++|++|+++|++||.|++|+|+.++.+++ .||||+|++.++|++||+.|||..+++.++.|+|.|.
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 45799999999999999999999999999999998865443 4999999999999999999999999766678888775
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 273 ~ 273 (346)
T TIGR01659 273 E 273 (346)
T ss_pred C
Confidence 3
No 11
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.69 E-value=3.2e-16 Score=119.67 Aligned_cols=82 Identities=51% Similarity=0.788 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC---cEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ---PFAFAVFSDQQSALGAMYALNNFAP-SDSACSL 136 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~---~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l 136 (144)
.+++|||||++||.|+...||+.||+.|-+.+.+.|++..+.++ ++|||+|.+..+|.+|+++|||.+| .+.+.+|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 46799999999999999999999999999999999988755543 4999999999999999999999999 5679999
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+||+.+
T Consensus 111 hiElAK 116 (284)
T KOG1457|consen 111 HIELAK 116 (284)
T ss_pred Eeeehh
Confidence 999865
No 12
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.2e-16 Score=117.84 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=67.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeecC
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSMA 143 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~~ 143 (144)
.++||||||..++++.||+.+|..||.|.+|-|..+ .-+||||||+|..+|+.|+..|||+.| +|..|+||.|..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn---PPGfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN---PPGFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec---CCCceEEeccCcccHHHHHhhcCCccc--cCceEEEEeecC
Confidence 568999999999999999999999999999888653 222999999999999999999999999 599999999864
No 13
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.67 E-value=4.2e-16 Score=120.53 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+..||||+||++++||++|+++|+.||.|++|+|+++++.+ +||||+|++.++|+.|+ .|||..|. ++.|.|.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~-gfAfVtF~d~~aaetAl-lLnGa~l~--d~~I~It 76 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYA-CTAYVTFKDAYALETAV-LLSGATIV--DQRVCIT 76 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcc-eEEEEEECCHHHHHHHH-hcCCCeeC--CceEEEE
Confidence 346899999999999999999999999999999999885544 49999999999999999 89999995 5667665
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=5.5e-16 Score=133.85 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=71.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
..++|||+||+.++++++|+++|+.||.|++|++.+++.+ .++||||+|++.++|.+|++.|||..| +|+.|+|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el--gGr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEe
Confidence 4579999999999999999999999999999999988543 345999999999999999999999999 499999998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 281 Ai 282 (612)
T TIGR01645 281 CV 282 (612)
T ss_pred cC
Confidence 75
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=4.5e-16 Score=133.46 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=68.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
+||||||+.++||++|+++|++||.|++|++.+|+.++ .+||||+|.+.++|++|++.||+..+. |+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~--gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG--GKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeeEEeeccc
Confidence 79999999999999999999999999999999886543 349999999999999999999999994 8889999974
No 16
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.2e-16 Score=117.68 Aligned_cols=78 Identities=27% Similarity=0.553 Sum_probs=68.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||||||-++.|+||++||.+||.|..|.|+. ..+.-+||||+|+|..+|+.||..-||..++ |+.|+|||-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~-r~g~ppfafVeFEd~RDAeDAiygRdGYdyd--g~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN-RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD--GCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc-CCCCCCeeEEEecCccchhhhhhcccccccC--cceEEEEec
Confidence 3467899999999999999999999999999999863 3333449999999999999999999999996 899999985
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 3
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=1.2e-15 Score=96.59 Aligned_cols=69 Identities=26% Similarity=0.405 Sum_probs=59.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 67 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
|||+|||.++++++|+++|+.+|.|..+++..++.+ .+++|||+|.+.++|.+|++.++|..|+ |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~--g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID--GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC--CEEcC
Confidence 799999999999999999999999999999987552 2239999999999999999999999994 76664
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=99.65 E-value=1.7e-15 Score=93.78 Aligned_cols=71 Identities=35% Similarity=0.481 Sum_probs=63.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
+|||+||+.++++++|+++|++||.+..+++..+.+...++|||+|.+.++|++|++.++|..+. |+.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~--~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG--GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC--CEEEee
Confidence 58999999999999999999999999999988766334459999999999999999999999994 777765
No 19
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.3e-15 Score=120.16 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=74.5
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCC
Q 032280 55 FPAYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDS 132 (144)
Q Consensus 55 ~~~~~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~ 132 (144)
.+++...+.-+||||+.|+++++|+.|++.|+.||.|+.|+|+.|+.++++ ||||+|++..+...|.+..+|..|+
T Consensus 92 ~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id-- 169 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID-- 169 (335)
T ss_pred CCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec--
Confidence 344555677899999999999999999999999999999999999766555 9999999999999999999999997
Q ss_pred CCeEEEEee
Q 032280 133 ACSLLFPHS 141 (144)
Q Consensus 133 g~~l~v~~s 141 (144)
|+.|-|++.
T Consensus 170 grri~VDvE 178 (335)
T KOG0113|consen 170 GRRILVDVE 178 (335)
T ss_pred CcEEEEEec
Confidence 666666654
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=8.6e-16 Score=132.65 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++||||||+++++|++|+++|++||.|++|++++|+.+ .++||||+|++.++|++|++.|||..|+ |+.|+|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~--GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe--cceeeec
Confidence 34578999999999999999999999999999999988544 3449999999999999999999999995 8888887
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
+.
T Consensus 183 rp 184 (612)
T TIGR01645 183 RP 184 (612)
T ss_pred cc
Confidence 64
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=1.2e-15 Score=127.44 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=67.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCH--HHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQ--QSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~--~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
....+||||||++++++++|+++|+.||.|.+|.|++.+ +++||||+|.+. .++.+||+.|||..+ +|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET--GRGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK--GRSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc--CCceEEEEecCCcHHHHHHHHHHhcCCee--cCceeEEe
Confidence 345689999999999999999999999999999999544 467999999987 789999999999999 58999997
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
-.
T Consensus 84 KA 85 (759)
T PLN03213 84 KA 85 (759)
T ss_pred ec
Confidence 54
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=2.5e-15 Score=129.32 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ-NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~-~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
+...+|||+||+.+++|++|+++|++||.|.+|+|++|.. .+++||||+|.+.++|++||+.|||..+. .++.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCccccccc
Confidence 3457899999999999999999999999999999998832 33459999999999999999999999984 366777766
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
|.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 54
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=2.9e-15 Score=128.95 Aligned_cols=74 Identities=24% Similarity=0.305 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREF--PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~--G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.+++|++|+++|++| |.|++|++++ + ||||+|++.++|++|++.|||..|+ |+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--g----fAFVeF~s~e~A~kAi~~lnG~~i~--Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--D----YAFVHFEDREDAVKAMDELNGKELE--GSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--C----eEEEEeCCHHHHHHHHHHhCCCEEC--CEEEEEE
Confidence 346899999999999999999999999 9999998753 2 9999999999999999999999995 8999999
Q ss_pred eecC
Q 032280 140 HSMA 143 (144)
Q Consensus 140 ~s~~ 143 (144)
|+..
T Consensus 303 ~Akp 306 (578)
T TIGR01648 303 LAKP 306 (578)
T ss_pred EccC
Confidence 9853
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.61 E-value=5.3e-15 Score=124.99 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
+..++||||||+.++++++|+++|+.||.|..+.++.+..+ .++||||+|.+.++|..|++.|||..|. |+.|+|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~--~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG--DNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 45689999999999999999999999999999999887433 3459999999999999999999999995 7788888
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
++
T Consensus 371 ~a 372 (509)
T TIGR01642 371 RA 372 (509)
T ss_pred EC
Confidence 85
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.61 E-value=4.7e-15 Score=125.56 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=69.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
...+|||+||++++++++|+++|+.||.|++|.+.++++ ..+|||+|++.++|.+|++.|||..|.+.++.|+|+||.
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~--~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN--VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC--ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 345899999999999999999999999999999876443 248999999999999999999999997566899999986
Q ss_pred C
Q 032280 143 A 143 (144)
Q Consensus 143 ~ 143 (144)
.
T Consensus 173 ~ 173 (481)
T TIGR01649 173 P 173 (481)
T ss_pred C
Confidence 3
No 26
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=7.1e-15 Score=100.35 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
+..+.|||.|||+++|.++..+||.+||.|..|++-..+.+. +-|||.|+|..+|.+|++.|+|..++ ++-|.|-|
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~Tr-GTAFVVYedi~dAk~A~dhlsg~n~~--~ryl~vly 91 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETR-GTAFVVYEDIFDAKKACDHLSGYNVD--NRYLVVLY 91 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcC-ceEEEEehHhhhHHHHHHHhcccccC--CceEEEEe
Confidence 557899999999999999999999999999999997555444 48999999999999999999999995 77777654
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=4.2e-15 Score=124.18 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
.++|||+||+.++++++|+++|++||.|.+|.+..+..+ .++||||+|.+.++|.+|++.|||..|. |+.|+|.|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~--g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA--GRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC--CEEEEEEEc
Confidence 689999999999999999999999999999999887654 3349999999999999999999999994 889999984
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=5.8e-15 Score=126.61 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~-~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....+|||+||+.++++++|+++|++||.|++|++..+. +..++||||+|++.++|.+|++.|||..|. |+.|+|.|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~--gk~l~V~~ 360 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG--GKPLYVAL 360 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC--CceeEEEe
Confidence 345689999999999999999999999999999998874 334459999999999999999999999994 88899988
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
..
T Consensus 361 a~ 362 (562)
T TIGR01628 361 AQ 362 (562)
T ss_pred cc
Confidence 54
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.60 E-value=4.4e-15 Score=125.73 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=65.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHh--cCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL--NNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~l--nG~~~~~~g~~l~v~~s 141 (144)
+++|||+||+++++|++|+++|++||.|++|+++.++ +||||+|++.++|++|++.| ||..+ .|+.|+|+||
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k----~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK----RQALVEFEDEESAKACVNFATSVPIYI--RGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC----CEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEEEec
Confidence 5899999999999999999999999999999998643 39999999999999999875 67777 4889999998
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 76 ~ 76 (481)
T TIGR01649 76 T 76 (481)
T ss_pred C
Confidence 4
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.59 E-value=9.5e-15 Score=122.07 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=68.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...+||||+||+.++++++|+++|++||.|.+|+++.++.++ ++||||+|.+.++|.+|| .|||..|. |+.|.|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~--g~~i~v~ 163 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLL--GRPIIVQ 163 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEEC--CeeeEEe
Confidence 346899999999999999999999999999999999885443 449999999999999999 59999994 7888887
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
++.
T Consensus 164 ~~~ 166 (457)
T TIGR01622 164 SSQ 166 (457)
T ss_pred ecc
Confidence 753
No 31
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2e-16 Score=117.43 Aligned_cols=78 Identities=21% Similarity=0.393 Sum_probs=72.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.++.-||||||+++.||.||--+|++||+|++|.|++|++++++ |||+.|+|..+..-|+..|||..|. |+.|||+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~--gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL--GRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec--ceeEEee
Confidence 45667999999999999999999999999999999999877655 9999999999999999999999994 9999999
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
+.
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 85
No 32
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=5.1e-15 Score=113.46 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=57.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhc
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~ln 125 (144)
....+||||||+|++..++|++.|++||+|++..++.|+.++++ ||||+|.|.++|.+||+.-|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 34568999999999999999999999999999999999766554 99999999999999998765
No 33
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=1.8e-14 Score=108.96 Aligned_cols=76 Identities=30% Similarity=0.410 Sum_probs=69.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
.++||||||+.++++++|+++|.+||.+..+++..++ +..++||||+|.+.++|..|++.+||..|. |+.|+|++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~--~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE--GRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC--CceeEeecc
Confidence 5899999999999999999999999999999998885 334459999999999999999999999994 888999874
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.4e-14 Score=113.29 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
..+..+|||||+...++|++|++.|+.||.|.+||+..+++ |+||.|++.|+|.+||..+||+++ .|..+|..|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qG----YaFVrF~tkEaAahAIv~mNntei--~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQG----YAFVRFETKEAAAHAIVQMNNTEI--GGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccc----eEEEEecchhhHHHHHHHhcCcee--CceEEEEec
Confidence 45568999999999999999999999999999999987766 999999999999999999999999 489999998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
.+
T Consensus 235 GK 236 (321)
T KOG0148|consen 235 GK 236 (321)
T ss_pred cc
Confidence 64
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=113.53 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=71.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...|.|.-||.++|+|||+.||+..|+|++|+|++|+-++++ ||||.|.+.++|++|+..|||.++ ..++|+|.|.
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKVSyA 118 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKVSYA 118 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEEEEec
Confidence 346889999999999999999999999999999999877665 999999999999999999999999 5889999986
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 119 R 119 (360)
T KOG0145|consen 119 R 119 (360)
T ss_pred c
Confidence 5
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.56 E-value=7.2e-14 Score=86.80 Aligned_cols=73 Identities=34% Similarity=0.474 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
+|+|+||+.++++++|+++|+.+|.+..+.+..+..+ ..++|||+|.+.++|..|++.++|..+. |+.++|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~--~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG--GRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEeC
Confidence 5899999999999999999999999999999876433 2349999999999999999999999984 78888764
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.55 E-value=4.5e-14 Score=86.92 Aligned_cols=69 Identities=33% Similarity=0.431 Sum_probs=60.3
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 69 VAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ--NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 69 VgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~--~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
|+||+.++++++|+++|++||.|..+.+..++. ..+++|||+|.+.++|.+|++.|+|..+. |+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~--~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD--GRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC--CcEEEeC
Confidence 689999999999999999999999999987643 23349999999999999999999999994 7777763
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=5.7e-15 Score=116.34 Aligned_cols=69 Identities=19% Similarity=0.397 Sum_probs=64.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
.||||||+.++++.+|+.||++||+|.+|.|++| ||||+.+|...|+.||+.|+|..|+ |..|+||-|+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLh--g~nInVeaSk 72 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLH--GVNINVEASK 72 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceec--ceEEEEEecc
Confidence 5999999999999999999999999999999864 9999999999999999999999995 8889998775
No 39
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.5e-15 Score=112.82 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....||||||+|-.+|+|.-|...|-.||.|.+|.+..|- .+.++||||+|+..++|.+||..||+.+| .|++|||
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirV 84 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRV 84 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEE
Confidence 3567999999999999999999999999999999998873 34455999999999999999999999999 5999999
Q ss_pred EeecCC
Q 032280 139 PHSMAM 144 (144)
Q Consensus 139 ~~s~~~ 144 (144)
.+.+.+
T Consensus 85 N~AkP~ 90 (298)
T KOG0111|consen 85 NLAKPE 90 (298)
T ss_pred eecCCc
Confidence 997653
No 40
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.53 E-value=7e-14 Score=85.26 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=49.5
Q ss_pred HHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 81 IYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 81 L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
|+++|++||.|.++++..++ +.+|||+|++.++|++|++.|||..| .|+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 78999999999999986544 34999999999999999999999999 4889999997
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.53 E-value=2.8e-14 Score=119.14 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=71.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
+++||||++++++|++|.++|+..|.|.+++++.|+.+++. |||++|.+.++|++|++.|||.++ .|+.|+|+|..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 88999999999999999999999999999999999766654 999999999999999999999999 59999999864
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=5.3e-14 Score=115.99 Aligned_cols=79 Identities=25% Similarity=0.312 Sum_probs=72.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
..-||||.||.|+.|+||..||++.|+|-+++|.+|. +.+++||||+|.+.++|++|++.||+++|. .|+.|+|+-|
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~S 161 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVS 161 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEe
Confidence 4679999999999999999999999999999999984 445569999999999999999999999995 5999999998
Q ss_pred cC
Q 032280 142 MA 143 (144)
Q Consensus 142 ~~ 143 (144)
++
T Consensus 162 va 163 (506)
T KOG0117|consen 162 VA 163 (506)
T ss_pred ee
Confidence 75
No 43
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.6e-14 Score=116.97 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...+.|||.||..++||+.|+++|++||.|+.|+.++| ||||+|.++++|.+||+.|||+.|+ |..|.|...
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------YaFVHf~eR~davkAm~~~ngkeld--G~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------YAFVHFAEREDAVKAMKETNGKELD--GSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc------eeEEeecchHHHHHHHHHhcCceec--CceEEEEec
Confidence 35689999999999999999999999999999887644 9999999999999999999999996 777777654
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
+
T Consensus 329 K 329 (506)
T KOG0117|consen 329 K 329 (506)
T ss_pred C
Confidence 3
No 44
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=4.7e-14 Score=100.52 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=71.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+...|||.++....+|++|.+.|..||+|++++|-.|++++. +||.|+|++...|++|+++|||..|. +..|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll--~q~v~VD 147 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL--GQNVSVD 147 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh--CCceeEE
Confidence 3567899999999999999999999999999999988877664 39999999999999999999999995 7889999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|..
T Consensus 148 w~F 150 (170)
T KOG0130|consen 148 WCF 150 (170)
T ss_pred EEE
Confidence 864
No 45
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.4e-14 Score=117.66 Aligned_cols=79 Identities=27% Similarity=0.356 Sum_probs=69.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCCcEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-QNSQPFAFAVFSDQQSALGAMYALNNFAP-SDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~-~~~~~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l~v~~ 140 (144)
+.++||||-|+..++|.|++++|++||.|++|.|.++. +.+++||||.|++++.|..||++|||..- .|+...|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 35789999999999999999999999999999999974 44566999999999999999999999864 66777788877
Q ss_pred e
Q 032280 141 S 141 (144)
Q Consensus 141 s 141 (144)
.
T Consensus 203 A 203 (510)
T KOG0144|consen 203 A 203 (510)
T ss_pred c
Confidence 4
No 46
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=4.4e-14 Score=106.92 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.+...+|-|-||-+.++.++|+.+|++||.|.+|.|-+|..++. +||||.|.+..+|+.|+++|+|..|| |+.|+|
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld--gRelrV 87 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD--GRELRV 87 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec--cceeee
Confidence 35567899999999999999999999999999999988865544 49999999999999999999999997 778887
Q ss_pred Eee
Q 032280 139 PHS 141 (144)
Q Consensus 139 ~~s 141 (144)
.+.
T Consensus 88 q~a 90 (256)
T KOG4207|consen 88 QMA 90 (256)
T ss_pred hhh
Confidence 653
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=1.2e-13 Score=102.65 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
..+...|||||||+..++++.|+++|-+.|.|+++++-+++.+. ++||||+|.++++|+-|++.||+.++- |+.|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY--grpIr 82 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY--GRPIR 82 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc--CceeE
Confidence 34567899999999999999999999999999999998875443 449999999999999999999988884 88888
Q ss_pred EEee
Q 032280 138 FPHS 141 (144)
Q Consensus 138 v~~s 141 (144)
|.-+
T Consensus 83 v~ka 86 (203)
T KOG0131|consen 83 VNKA 86 (203)
T ss_pred EEec
Confidence 8654
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=3.4e-13 Score=110.97 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAP-SDSACSLLF 138 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l~v 138 (144)
.+.-+||||-+|+.++|+||+++|++||.|.+|.|++|+.++.. ||||.|.++++|.+|+.+|+..+. .|....|+|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 34557999999999999999999999999999999999766543 999999999999999999998654 666667776
Q ss_pred Eee
Q 032280 139 PHS 141 (144)
Q Consensus 139 ~~s 141 (144)
.|.
T Consensus 112 k~A 114 (510)
T KOG0144|consen 112 KYA 114 (510)
T ss_pred ccc
Confidence 653
No 49
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.9e-13 Score=105.88 Aligned_cols=77 Identities=13% Similarity=0.236 Sum_probs=69.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
+-.+|||.|..+++-++||+.|..||+|.++++++|..+. ++||||.|-+.++|+.||..|||.=| .++.||-.|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTNWA 139 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTNWA 139 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecccc
Confidence 4579999999999999999999999999999999995443 44999999999999999999999999 4889999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 140 T 140 (321)
T KOG0148|consen 140 T 140 (321)
T ss_pred c
Confidence 4
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=7.3e-13 Score=111.66 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=71.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc-EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP-FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~-~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
..+|.|.|||+.+.+.+|+.+|++||.|.+|.|.+...++.+ ||||.|.+..+|.+|++.+||..|+ |+.|.|+|.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~--gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID--GRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec--CceeEEeeec
Confidence 457999999999999999999999999999999876655555 9999999999999999999999996 8999999986
Q ss_pred C
Q 032280 143 A 143 (144)
Q Consensus 143 ~ 143 (144)
.
T Consensus 195 ~ 195 (678)
T KOG0127|consen 195 D 195 (678)
T ss_pred c
Confidence 4
No 51
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.38 E-value=1.6e-12 Score=109.84 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=58.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcC------------CCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCc
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREF------------PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFA 128 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~------------G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~ 128 (144)
....++||||||+.++|+++|+++|+++ +.|..+.+.. .++||||+|.+.++|..|| .|||..
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----EKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----CCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 3456899999999999999999999975 2344444432 2339999999999999999 699999
Q ss_pred cCCCCCeEEEEe
Q 032280 129 PSDSACSLLFPH 140 (144)
Q Consensus 129 ~~~~g~~l~v~~ 140 (144)
|. |..|+|..
T Consensus 247 ~~--g~~l~v~r 256 (509)
T TIGR01642 247 YS--NVFLKIRR 256 (509)
T ss_pred ee--CceeEecC
Confidence 95 77788753
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.9e-13 Score=107.17 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
..|||-.|+.-+++++|+-||+.||.|.+|.++++++++-. ||||+|++.+++++|.-.|++..|+ .+.|+|+||.
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID--DrRIHVDFSQ 317 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID--DRRIHVDFSQ 317 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec--cceEEeehhh
Confidence 68999999999999999999999999999999999877665 9999999999999999999999996 7889999986
Q ss_pred C
Q 032280 143 A 143 (144)
Q Consensus 143 ~ 143 (144)
.
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 4
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.38 E-value=2.7e-12 Score=81.89 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=50.0
Q ss_pred HHHHHHHhh----cCCCeEEEE-EeecC----CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 78 PREIYNLFR----EFPGYESSH-LRSST----QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 78 e~~L~~~F~----~~G~v~~v~-l~~~~----~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
+++|+++|+ +||.|.+|. +..++ +..++||||+|.+.++|.+|++.|||..+. |+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~--gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD--GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEe
Confidence 678999999 999999995 65554 334559999999999999999999999995 777875
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=7.8e-12 Score=97.74 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=70.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.....|||-||..+.+|.-|.++|..||.|.+|++++|-.+++ +||||+..+-++|.-||..|||+.+. +++|.|.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg--~rvLQVs 353 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG--DRVLQVS 353 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc--ceEEEEE
Confidence 3467899999999999999999999999999999999955444 49999999999999999999999994 8889998
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
|-
T Consensus 354 FK 355 (360)
T KOG0145|consen 354 FK 355 (360)
T ss_pred Ee
Confidence 74
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.33 E-value=1.8e-12 Score=109.09 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=65.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
.||||||+++++|++|+.+|+.||.|+.|.+.+|. +..++||||+|.+.++|.+|++.|||.++ .|+.|+|..
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~ 354 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSV 354 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEE
Confidence 49999999999999999999999999999999884 44455999999999999999999999888 488888754
No 56
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.9e-12 Score=103.71 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=63.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.|||.||+.+++.++|+++|+.||.|++|++..+..+.++| ||+|++.++|.+|++.|||..+. ++.|-|
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~--~kki~v 147 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN--GKKIYV 147 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC--CCeeEE
Confidence 39999999999999999999999999999999987777778 99999999999999999999994 555544
No 57
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.32 E-value=6.6e-12 Score=95.82 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=66.0
Q ss_pred cceEEEcCCCCCCCHHHHHH----HhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 64 VRTLFVAGLPEDVKPREIYN----LFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~----~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
..||||.||++.+..++|++ ||++||+|.+|......+ -++-|||.|.+.+.|..|+++|+|..|- |+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K-mRGQA~VvFk~~~~As~A~r~l~gfpFy--gK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK-MRGQAFVVFKETEAASAALRALQGFPFY--GKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC-ccCceEEEecChhHHHHHHHHhcCCccc--Cchhhee
Confidence 34999999999999999888 999999999998764322 3347999999999999999999999995 7889998
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 86 yA~ 88 (221)
T KOG4206|consen 86 YAK 88 (221)
T ss_pred ccc
Confidence 864
No 58
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.32 E-value=4.2e-12 Score=110.44 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=67.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeecC
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSMA 143 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~~ 143 (144)
+||||||+|+.+++|.||.++|+.||.|.+|.++.+.+ ||||....+.+|++|+..|+...+ .++.|+|.|.+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~----cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG----CAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCc----eeEEEEeehhHHHHHHHHHhcccc--cceeeEEeeecc
Confidence 48999999999999999999999999999999976555 999999999999999999998888 478899999753
No 59
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=7.8e-12 Score=105.55 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=67.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHh-----cC-CccCCC
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYAL-----NN-FAPSDS 132 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~l-----nG-~~~~~~ 132 (144)
....+||||.||++++||++|++.|++||.|..+.|+.++.++.+ .|||.|.+..+|..||+.. .| ..+ .
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll--~ 366 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL--D 366 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE--e
Confidence 345689999999999999999999999999999999988766554 9999999999999999887 23 334 4
Q ss_pred CCeEEEEeec
Q 032280 133 ACSLLFPHSM 142 (144)
Q Consensus 133 g~~l~v~~s~ 142 (144)
|+.|+|...+
T Consensus 367 GR~Lkv~~Av 376 (678)
T KOG0127|consen 367 GRLLKVTLAV 376 (678)
T ss_pred ccEEeeeecc
Confidence 8888887543
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=99.49 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=65.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+..++|||||||...++|.+|++.|.+||+|+++++...++ +|||+|.++++|+.|.+.+-...+ -+|..|+|-
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~----CAFv~ftTR~aAE~Aae~~~n~lv-I~G~Rl~i~ 298 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG----CAFVTFTTREAAEKAAEKSFNKLV-INGFRLKIK 298 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc----cceeeehhhHHHHHHHHhhcceee-ecceEEEEE
Confidence 345678999999999999999999999999999999875444 999999999999998866655333 258889999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 299 Wg~ 301 (377)
T KOG0153|consen 299 WGR 301 (377)
T ss_pred eCC
Confidence 975
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.2e-11 Score=101.81 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=67.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
..|||| .++||..|+++|+.+|.|+++++.+|. ++-+||||.|.+..+|++||++||...+ +|+.+||.||.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 369999 999999999999999999999999998 6555999999999999999999999999 59999999985
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.4e-11 Score=96.66 Aligned_cols=79 Identities=27% Similarity=0.372 Sum_probs=68.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCCcEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-QNSQPFAFAVFSDQQSALGAMYALNNFAP-SDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~-~~~~~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l~v~~ 140 (144)
+.|+||||-|...-+|||++++|..||.|++|.+.+.. +..++||||.|.+..+|..||+.|+|.+- .+....|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 56899999999999999999999999999999998763 34455999999999999999999999765 65666777766
Q ss_pred e
Q 032280 141 S 141 (144)
Q Consensus 141 s 141 (144)
.
T Consensus 98 A 98 (371)
T KOG0146|consen 98 A 98 (371)
T ss_pred c
Confidence 3
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=6.9e-12 Score=99.08 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=66.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
..+.+|+||||...++..||+..|++||.|.+|++++| |+||.|+-.++|..|++.|||++|+ |+.++|..|
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~d~~eda~~air~l~~~~~~--gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLDNTEFQ--GKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEEeeccchHHHHhcccccccc--cceeeeeee
Confidence 34568999999999999999999999999999999754 9999999999999999999999996 777888766
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 148 t 148 (346)
T KOG0109|consen 148 T 148 (346)
T ss_pred c
Confidence 3
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=4.1e-11 Score=103.48 Aligned_cols=74 Identities=26% Similarity=0.274 Sum_probs=65.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 67 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-----SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-----~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
|||.||+++++.++|+.+|+..|.|.++.|...++. +.+||||+|.+.++|++|++.|||+.++ |+.|.|.+|
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld--GH~l~lk~S 595 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD--GHKLELKIS 595 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec--CceEEEEec
Confidence 999999999999999999999999999998664332 2259999999999999999999999997 777888776
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 4
No 65
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.16 E-value=2.7e-11 Score=92.84 Aligned_cols=67 Identities=28% Similarity=0.463 Sum_probs=59.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
...|.||||.||..+++|++|+.+|+.|.+....+|. .+++.+.||++|++.+.|..||..|+|..+
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~--~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR--ARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe--cCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 3457799999999999999999999999998777764 356677999999999999999999999998
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=4.2e-11 Score=97.41 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=65.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+||||.+.+++.|+.||..|..||.|++|.+.+|.-+ .++||||+|+-.+.|.-|++.|||..+. |++|+|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG--GRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc--Ccccccc
Confidence 47999999999999999999999999999999888433 3449999999999999999999999994 7778875
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.14 E-value=1e-10 Score=99.50 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=69.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
..|+|||++|+..+...+|++||++||+|+..+++.+.++ .+|||||++.+..+|.+||+.|+-+.| +|+.|.|+-
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISVEk 481 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISVEK 481 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeeeee
Confidence 3579999999999999999999999999999999988654 456999999999999999999999999 488888875
Q ss_pred e
Q 032280 141 S 141 (144)
Q Consensus 141 s 141 (144)
.
T Consensus 482 a 482 (940)
T KOG4661|consen 482 A 482 (940)
T ss_pred c
Confidence 4
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=5.6e-11 Score=93.31 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=66.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+..+|||-.||.+..+.||-.+|-.||.|++.++..|+.++ ++||||.|++..+|+.||.+|||..|. =+.|+|.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG--MKRLKVQ 360 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG--MKRLKVQ 360 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh--hhhhhhh
Confidence 456789999999999999999999999999999998886554 559999999999999999999999993 3445554
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.14 E-value=1.8e-10 Score=95.44 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=65.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhh-cCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFR-EFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~-~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
..|.+||.|||+++.+.+|++||+ +.|+|+-|.|..|..++ +.||.|||++.+.+++|++.||-..+ +|+.|+|.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~--~GR~l~vK 119 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV--NGRELVVK 119 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc--cCceEEEe
Confidence 346799999999999999999997 77999999999985544 44999999999999999999999988 47777764
No 70
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.11 E-value=1.9e-10 Score=85.65 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=64.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeecCC--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESS-HLRSSTQ--NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v-~l~~~~~--~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
-..+||||||..+++|..|.++|+.||.+.+. ++.++.. ..++||||.|++.+.+.+|++.|||..+ +++.+.|+
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l--~nr~itv~ 172 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL--CNRPITVS 172 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh--cCCceEEE
Confidence 34689999999999999999999999998653 4445533 4445999999999999999999999999 46777777
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
|.
T Consensus 173 ya 174 (203)
T KOG0131|consen 173 YA 174 (203)
T ss_pred EE
Confidence 64
No 71
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.09 E-value=5.6e-10 Score=84.41 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=64.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREF-PGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~-G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...+||+.++..+.+.++..+|++| |.+..+++.+++++|.+ ||||+|++.+.|.-|-+.||++-|. ++.|.+.+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~--e~lL~c~v 126 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM--EHLLECHV 126 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh--hheeeeEE
Confidence 3468999999999999999999999 66788888788766554 9999999999999999999999984 77777654
No 72
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=5.3e-11 Score=90.97 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
+..|||||+||...|+|+-|.++|-+.|.|.+|.|..++.++..||||.|+++.+..-|++.|||..+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 456999999999999999999999999999999987776666669999999999999999999999884
No 73
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.06 E-value=4e-10 Score=93.96 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=61.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
......+|||+|||.++++++|+++|.+||.|+...|.... .+..+||||+|++.+++..||++- .+.-.++.|.
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~ 360 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLN 360 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeEE
Confidence 34455679999999999999999999999999888775432 222269999999999999999765 3322578888
Q ss_pred EEe
Q 032280 138 FPH 140 (144)
Q Consensus 138 v~~ 140 (144)
||-
T Consensus 361 Vee 363 (419)
T KOG0116|consen 361 VEE 363 (419)
T ss_pred EEe
Confidence 874
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=5.6e-10 Score=90.92 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=67.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...+|||..++.|.+|+||+.+|+.||+|+.|.|.++. ++.++|||++|.+..+...|+..||=..+ .|.-|||-.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL--GGQyLRVGk 286 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGK 286 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--ccceEeccc
Confidence 34689999999999999999999999999999998873 34455999999999999999999997777 588898876
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
++
T Consensus 287 ~v 288 (544)
T KOG0124|consen 287 CV 288 (544)
T ss_pred cc
Confidence 54
No 75
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.02 E-value=5.2e-10 Score=96.92 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-----CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-----QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~-----~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
...++||||||+..++|+.|...|..||.|.++++..-+ .....||||.|-++.+|++|++.|||..+ .+..+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~e~ 249 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEYEM 249 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eeeee
Confidence 446789999999999999999999999999999997642 23334999999999999999999999999 47889
Q ss_pred EEEeecCC
Q 032280 137 LFPHSMAM 144 (144)
Q Consensus 137 ~v~~s~~~ 144 (144)
++-|+.|+
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99999764
No 76
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=5e-10 Score=94.68 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=60.4
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 58 YGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 58 ~~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
.+.+...++|+|-||+..|++++|+++|+.||+|++|+.-.+ +.+..||+|.|..+|++|+++||+.++-
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 344556789999999999999999999999999999765433 2338999999999999999999999984
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=4.1e-10 Score=86.29 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
..+|||+|++.+.+++|+++|..||.+.++.+.. + |+||+|+|..+|+.|+..|||.+|. +..+.+||..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--g----f~fv~fed~rda~Dav~~l~~~~l~--~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--G----FGFVEFEDPRDADDAVHDLDGKELC--GERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--c----cceeccCchhhhhcccchhcCceec--ceeeeeeccc
Confidence 3589999999999999999999999999888742 2 9999999999999999999999995 5558888764
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.96 E-value=3.3e-09 Score=82.76 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=64.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
.+|+|.||++.|+++||+++|.+||.+..+-+.++..+. .+.|-|.|...++|++|++.+||..++ |..++++.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld--G~~mk~~~ 158 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD--GRPMKIEI 158 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC--CceeeeEE
Confidence 579999999999999999999999999988888875443 348999999999999999999997776 66677764
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=8.5e-10 Score=95.43 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=68.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
..+..|+|.||++..+-++++.||..||.+.+|+|.... ...++||||+|-+..+|.+|+++|.++.|. |+.|.++
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly--GRrLVLE 688 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY--GRRLVLE 688 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee--chhhhee
Confidence 346789999999999999999999999999999996542 223459999999999999999999999996 8889999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|..
T Consensus 689 wA~ 691 (725)
T KOG0110|consen 689 WAK 691 (725)
T ss_pred hhc
Confidence 863
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.94 E-value=2.4e-09 Score=88.83 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=63.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
+..+|||.|||.++|+..|++-|..||.|..+.|.-+ ++.-+.|.|.+.++|++||..|||.+++ |+.|+|.|
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskGVVrF~s~edAEra~a~Mngs~l~--Gr~I~V~y 607 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKGVVRFFSPEDAERACALMNGSRLD--GRNIKVTY 607 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccceEEecCHHHHHHHHHHhccCccc--Cceeeeee
Confidence 4457999999999999999999999999998888432 2225699999999999999999999996 88898876
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.83 E-value=4.7e-09 Score=81.79 Aligned_cols=73 Identities=16% Similarity=0.360 Sum_probs=64.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.-+||.|.|..+++++.|-+.|++|-.....++++++++++. |+||.|.|..++..|+++|||..+. .+.|++
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg--srpikl 264 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG--SRPIKL 264 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc--cchhHh
Confidence 357999999999999999999999999988889988776655 9999999999999999999999984 444444
No 82
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.83 E-value=3.9e-09 Score=85.13 Aligned_cols=61 Identities=18% Similarity=0.356 Sum_probs=53.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHH
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYA 123 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~ 123 (144)
+..+||||+|+++++++.|++.|++||+|.+|.+.+|..+++ +|+||+|++.+...+++..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc
Confidence 667899999999999999999999999999999998855444 4999999998888887754
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.76 E-value=1.8e-08 Score=78.34 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=67.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
..+.+.+||||+.+.++-++++..|+.||.+..+.+..++..+ ++|+||+|.+.+.++.|++ |||..|. +..+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~--~~~i~v 174 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP--GPAIEV 174 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc--ccccee
Confidence 3456889999999999999999999999999988887775443 4499999999999999998 9999995 777877
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
.+-+
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 7643
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.72 E-value=7.9e-08 Score=77.72 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=62.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYES--------SHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSAC 134 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~--------v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~ 134 (144)
...|||+|||.++|.+|+.++|++||.|.. |+|-++..+ -++=|.++|...++.+-|++.|++..| +|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~--rg~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL--RGK 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc--cCc
Confidence 456999999999999999999999998843 555555433 233799999999999999999999999 599
Q ss_pred eEEEEe
Q 032280 135 SLLFPH 140 (144)
Q Consensus 135 ~l~v~~ 140 (144)
.|+|+-
T Consensus 212 ~~rVer 217 (382)
T KOG1548|consen 212 KLRVER 217 (382)
T ss_pred EEEEeh
Confidence 999974
No 85
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.71 E-value=2.1e-08 Score=80.97 Aligned_cols=58 Identities=24% Similarity=0.495 Sum_probs=52.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHH
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAM 121 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~ 121 (144)
.+++|||+|+.++++++|++.|++||.|..+.+.+|..+.+. |+||+|.+.+++++++
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec
Confidence 568999999999999999999999999999999998665544 9999999999999887
No 86
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.56 E-value=3.4e-07 Score=70.15 Aligned_cols=77 Identities=22% Similarity=0.422 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
....+||+.|||..++.+.|..+|++|.+.++++++..+ ...|||+|.+...|..|...|+|..+. +...++|.++
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~~~it-~~~~m~i~~a 219 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQGFKIT-KKNTMQITFA 219 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC---CceeEEecchhhhhHHHhhhhccceec-cCceEEeccc
Confidence 345899999999999999999999999999999997532 228999999999999999999999995 3778888876
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 220 ~ 220 (221)
T KOG4206|consen 220 K 220 (221)
T ss_pred C
Confidence 4
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.55 E-value=3.6e-07 Score=75.42 Aligned_cols=74 Identities=24% Similarity=0.257 Sum_probs=66.7
Q ss_pred cceEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 64 VRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 64 ~~tLfVgnLp~~-vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
...|-|+||.++ ||.+-|..+|+-||.|.+|+|.++++. -|.|.+.|...|+-|++.|+|..+- |+.|||.+|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd---~ALIQmsd~~qAqLA~~hL~g~~l~--gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD---NALIQMSDGQQAQLAMEHLEGHKLY--GKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc---ceeeeecchhHHHHHHHHhhcceec--CceEEEeecc
Confidence 457889999876 899999999999999999999987652 6999999999999999999999994 7999999985
No 88
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.50 E-value=1.3e-06 Score=57.69 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=46.1
Q ss_pred ceEEEcCCCCCCCHHH----HHHHhhcCCC-eEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 65 RTLFVAGLPEDVKPRE----IYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~----L~~~F~~~G~-v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
..|||.|||.+.+... |++|+..+|+ |.+|. . +-|.|.|.+.+.|++|.+.|+|..+- |..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~----~tAilrF~~~~~A~RA~KRmegEdVf--G~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----G----GTAILRFPNQEFAERAQKRMEGEDVF--GNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------T----T-EEEEESSHHHHHHHHHHHTT--SS--SS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----C----CEEEEEeCCHHHHHHHHHhhcccccc--cceEEEE
Confidence 4699999999998765 6678889987 33321 1 27999999999999999999999874 7778887
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
|+
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 76
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.37 E-value=7.3e-07 Score=73.66 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=64.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
.-++.|+|+-+-|+-|-|..+|++||.|.+|.-.. |..+. -|.|.|.|.+.|..|..+|+|..|.+.-|+|||+||.
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-Knn~F-QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-KNNGF-QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe-cccch-hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 34677999999999999999999999998775432 22221 5999999999999999999999996567899999985
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.27 E-value=4e-06 Score=57.71 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=38.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCC
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNF 127 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~ 127 (144)
.|+|.++...++-++|+++|++||.|.-|.+.. +..-|||.|.+.++|++|++.+.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~----G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR----GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T----T-SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC----CCCEEEEEECCcchHHHHHHHHHhc
Confidence 588999999999999999999999988887743 2228999999999999999877655
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.26 E-value=2.9e-07 Score=78.03 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=68.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
+.+.||+|+--|..++++.+|+++|+.+|.|..|+++.|+... ++.|||+|.|.++...|+ .|.|..+. |..|.|
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll--g~pv~v 252 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL--GVPVIV 252 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc--CceeEe
Confidence 3456899999999999999999999999999999999985443 449999999999999999 89999985 777777
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
..+.
T Consensus 253 q~sE 256 (549)
T KOG0147|consen 253 QLSE 256 (549)
T ss_pred cccH
Confidence 6553
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=1.6e-06 Score=73.81 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=66.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ--NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~--~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
-+....+|||+|+..+++++++++...||.+...+++.|.. .+++|||.+|-|......|+..|||+.+. ++.|.+
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg--d~~lvv 363 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG--DKKLVV 363 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc--CceeEe
Confidence 34567899999999999999999999999999999988754 34559999999999999999999999994 455655
Q ss_pred E
Q 032280 139 P 139 (144)
Q Consensus 139 ~ 139 (144)
.
T Consensus 364 q 364 (500)
T KOG0120|consen 364 Q 364 (500)
T ss_pred e
Confidence 4
No 93
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.23 E-value=2.5e-05 Score=53.11 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=58.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCC--CCCeEEE
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREF--PGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSD--SACSLLF 138 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~--G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~--~g~~l~v 138 (144)
+||-|.|||...|.++|.+++... |...-+-|..|- +.+.+||||-|.+.++|.+-.+.++|..+.. ..++..|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988743 444445555553 3344599999999999999999999999832 2444455
Q ss_pred Ee
Q 032280 139 PH 140 (144)
Q Consensus 139 ~~ 140 (144)
.|
T Consensus 82 ~y 83 (97)
T PF04059_consen 82 SY 83 (97)
T ss_pred eh
Confidence 54
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=1.1e-06 Score=67.57 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=60.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
......|.|.||..++.+.+|++.|+++|.+....+ ...++||+|++.++|.+|++.|+|..+. ++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~--~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLN--GRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhc--Cceeeecc
Confidence 344567889999999999999999999999855443 1228999999999999999999999994 77777643
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.22 E-value=3.6e-06 Score=68.35 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=59.7
Q ss_pred cceEEEcCCCCCCCHHH----H--HHHhhcCCCeEEEEEeecCCCC-----Cc-E-EEEEeCCHHHHHHHHHHhcCCccC
Q 032280 64 VRTLFVAGLPEDVKPRE----I--YNLFREFPGYESSHLRSSTQNS-----QP-F-AFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~----L--~~~F~~~G~v~~v~l~~~~~~~-----~~-~-aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
..-+||-+|+..+-.++ | .++|.+||+|..|.+ ++++. .. + -||+|.+.++|.+||.+.+|..+|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv--Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV--NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEe--cccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34679999999988777 3 479999999998877 33321 11 2 399999999999999999999997
Q ss_pred CCCCeEEEEee
Q 032280 131 DSACSLLFPHS 141 (144)
Q Consensus 131 ~~g~~l~v~~s 141 (144)
|+.|+..|.
T Consensus 192 --Gr~lkatYG 200 (480)
T COG5175 192 --GRVLKATYG 200 (480)
T ss_pred --CceEeeecC
Confidence 899998875
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.08 E-value=1.5e-05 Score=67.13 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=50.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
+..-|-+.+|||.+|++||.++|+.++ |+++.+.+..++..+-|||+|.+.+++++|++ .|-..+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~m 73 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESM 73 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHh
Confidence 344566789999999999999999995 67766655534444489999999999999995 344443
No 97
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.01 E-value=2e-05 Score=47.70 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=41.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHH
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 121 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~ 121 (144)
+.|-|.+.+.+..+. +...|.+||+|+++.+- .+..+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 567788888776654 55689999999998873 22339999999999999985
No 98
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2.5e-05 Score=66.99 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=58.0
Q ss_pred ceEEEcCCCCCCCH------HHHHHHhhcCCCeEEEEEeecC-CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 65 RTLFVAGLPEDVKP------REIYNLFREFPGYESSHLRSST-QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 65 ~tLfVgnLp~~vte------~~L~~~F~~~G~v~~v~l~~~~-~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
..|+|.|+|---.. .-|..+|+++|++++..+..+. ++.++|.|++|.+..+|+.|++.|||+.|+ +.+++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld-knHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD-KNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec-ccceEE
Confidence 46889998863222 2366799999999988887663 344559999999999999999999999996 566766
Q ss_pred EE
Q 032280 138 FP 139 (144)
Q Consensus 138 v~ 139 (144)
+.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 54
No 99
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.94 E-value=2e-05 Score=64.09 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYES--------SHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~--------v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
.....||||-+|+..+++++|.++|.++|.|.. |.|-+++++... -|.|+|+|...|+.|+.-++|..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445568999999999999999999999998743 333334433332 8999999999999999999999994
Q ss_pred CCCCeEEEE
Q 032280 131 DSACSLLFP 139 (144)
Q Consensus 131 ~~g~~l~v~ 139 (144)
+.+|+|.
T Consensus 143 --gn~ikvs 149 (351)
T KOG1995|consen 143 --GNTIKVS 149 (351)
T ss_pred --CCCchhh
Confidence 6666653
No 100
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.93 E-value=5.1e-05 Score=66.54 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=63.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGY-ESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v-~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
...++.|-+.|+|++++-+||-++|..|--+ .+|+++++.++. .+-|-|.|++.++|.+|...|+|..| ..+++.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i--~nr~V~l 941 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI--RNRVVSL 941 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc--cceeEEE
Confidence 4456789999999999999999999999766 567777664432 33899999999999999999999999 4666666
Q ss_pred E
Q 032280 139 P 139 (144)
Q Consensus 139 ~ 139 (144)
+
T Consensus 942 ~ 942 (944)
T KOG4307|consen 942 R 942 (944)
T ss_pred E
Confidence 4
No 101
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.90 E-value=1.3e-05 Score=66.81 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=57.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeecC
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSMA 143 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~~ 143 (144)
..||||||...++.++|+.+|....--.+-.++. +.+|+||.+.|...|.+|++.++|+.-. .|..+.+++|+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~----k~gyafvd~pdq~wa~kaie~~sgk~el-qGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV----KSGYAFVDCPDQQWANKAIETLSGKVEL-QGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee----ecceeeccCCchhhhhhhHHhhchhhhh-cCceeeccchhh
Confidence 3699999999999999999998552111112221 1229999999999999999999998643 688999999873
No 102
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.85 E-value=1.1e-05 Score=64.59 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=61.9
Q ss_pred cceEE-EcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 64 VRTLF-VAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 64 ~~tLf-VgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
..++| |+||++++++++|+..|..+|.|..+++..+..++.+ ||||+|.+...+..++.. ++..+. ++.+++++
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~ 260 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG--GRPLRLEE 260 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc--Cccccccc
Confidence 34555 9999999999999999999999999998776555544 999999999999999877 666663 66677766
Q ss_pred e
Q 032280 141 S 141 (144)
Q Consensus 141 s 141 (144)
.
T Consensus 261 ~ 261 (285)
T KOG4210|consen 261 D 261 (285)
T ss_pred C
Confidence 4
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.78 E-value=2.9e-05 Score=64.60 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=55.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-------CC-C-------CcEEEEEeCCHHHHHHHHHHhcC
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-------QN-S-------QPFAFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~-------~~-~-------~~~aFV~F~~~~~A~~A~~~lnG 126 (144)
-.+|||.+-||+.+-.-+.|.+||+.+|.|.+|+|..-. +. + +-+|+|+|+..+.|.+|.+.||-
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 368999999999999999999999999999999996530 11 1 12899999999999999988864
Q ss_pred C
Q 032280 127 F 127 (144)
Q Consensus 127 ~ 127 (144)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.76 E-value=2.1e-05 Score=61.61 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=56.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC----------CCc----EEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN----------SQP----FAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~----------~~~----~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
..||++|||..++-.-|++||++||.|-.|-|...... +.. -|.|+|.+...|.++.+.|||..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999999888543211 111 3999999999999999999999995
Q ss_pred C
Q 032280 131 D 131 (144)
Q Consensus 131 ~ 131 (144)
|
T Consensus 155 g 155 (278)
T KOG3152|consen 155 G 155 (278)
T ss_pred C
Confidence 4
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.72 E-value=5.7e-05 Score=67.61 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=67.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....+.+|||+|..++....|...|..||.|..|.+ ..+..|++|.|++...++.|++.|-|..|.+-.+.|+|+|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy----~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY----RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeec----ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 345678999999999999999999999999999877 3345599999999999999999999999966667788877
Q ss_pred e
Q 032280 141 S 141 (144)
Q Consensus 141 s 141 (144)
.
T Consensus 528 a 528 (975)
T KOG0112|consen 528 A 528 (975)
T ss_pred c
Confidence 4
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00011 Score=62.40 Aligned_cols=63 Identities=27% Similarity=0.358 Sum_probs=51.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhh-cCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHH
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFR-EFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYA 123 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~-~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~ 123 (144)
-+..||||||+||.-++.+||..+|+ -||+|+-+-|=.|.+-+- +=|-|+|++..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 45678999999999999999999999 899998887744422222 2689999999999999864
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.69 E-value=0.00019 Score=59.10 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=60.0
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeecC
Q 032280 69 VAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSMA 143 (144)
Q Consensus 69 VgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~~ 143 (144)
|-|-=+-+|-+-|+.+....|+|..|.|.. + +.--|.|||++.+.|++|.++|||..|-..=++|+|||.+.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfk--k-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFK--K-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEe--c-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 345556789999999999999999988754 2 22279999999999999999999999955578999999753
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.69 E-value=9.2e-06 Score=72.53 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=60.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-QNSQPFAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~-~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
....+|||+|||...+++.+|+..|..+|.|.+|.+..-. ++...||||.|.+...+-+|+..+.|..|.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccc
Confidence 3456899999999999999999999999999999986542 333449999999999999999999998884
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=0.00018 Score=61.40 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=46.0
Q ss_pred HHHHhhcCCCeEEEEEeec-C----CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 81 IYNLFREFPGYESSHLRSS-T----QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 81 L~~~F~~~G~v~~v~l~~~-~----~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
++.-+++||.|.+|.+-+. - .-+-+.-||+|.+.+++++|+++|+|.+|. ++++...|
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~--nRtVvtsY 488 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA--NRTVVASY 488 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC--CcEEEEEe
Confidence 4445679999999998665 1 112227899999999999999999999994 88887776
No 110
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.54 E-value=0.00012 Score=63.25 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGY-ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP-SDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v-~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l~v~ 139 (144)
..+..|||.||=.-.|..+|+.|+.+-|++ ++. -.|+-. .-|||.|.+.++|.+.+.+|+|..+ .++++.|.++
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIK--SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhh--cceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 456789999999999999999999966654 433 223322 2799999999999999999999999 7789999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 864
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.52 E-value=0.0003 Score=59.48 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=46.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeecCCCCCc-EEEEEeCCHHHHHHHHHH
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYES-SHLRSSTQNSQP-FAFAVFSDQQSALGAMYA 123 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~-v~l~~~~~~~~~-~aFV~F~~~~~A~~A~~~ 123 (144)
...|-+.+||+.||++||.++|+-.--+.. +.+..+.+...+ -|||.|++.+.|++|+..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 456788999999999999999986654433 445555443322 899999999999999853
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.0002 Score=60.87 Aligned_cols=60 Identities=28% Similarity=0.468 Sum_probs=43.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeE-EEEEeecC------CCCCcEEEEEeCCHHHHHHHHHH
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYE-SSHLRSST------QNSQPFAFAVFSDQQSALGAMYA 123 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~-~v~l~~~~------~~~~~~aFV~F~~~~~A~~A~~~ 123 (144)
++.||||+|+++++|++|.+.|..||.+. +.-.+.+. ++..+|.|+.|+++.+...-+.+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 47899999999999999999999999863 21111111 12223999999999887754433
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.50 E-value=0.0016 Score=53.80 Aligned_cols=76 Identities=20% Similarity=0.175 Sum_probs=64.4
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~-vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
.....+.|-+|... ++-+.|-++|-.||.|+.|++++.+. +-|.|+..|..+.++|+..||+..+- |.+|.|..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~~lf--G~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNIPLF--GGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccCccc--cceEEEee
Confidence 44567889999886 67788999999999999999875432 27999999999999999999999883 88888888
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
|.
T Consensus 360 Sk 361 (494)
T KOG1456|consen 360 SK 361 (494)
T ss_pred cc
Confidence 75
No 114
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.39 E-value=0.0026 Score=44.10 Aligned_cols=69 Identities=14% Similarity=0.002 Sum_probs=55.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~-v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
......+.+...+..++.++|..+.+.+-. |..++++++...++-.+.+.|.+.++|+.-.+.+||+.|
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 344556667888888888888877766644 678899887666665799999999999999999999999
No 115
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.37 E-value=0.00083 Score=54.78 Aligned_cols=74 Identities=8% Similarity=0.061 Sum_probs=55.2
Q ss_pred CcceEEEcCCCC----CCC-------HHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 032280 63 EVRTLFVAGLPE----DVK-------PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSD 131 (144)
Q Consensus 63 ~~~tLfVgnLp~----~vt-------e~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~ 131 (144)
..+||-+.||=. +.+ +++|++-.++||.|.+|.|. ++.. .+.+-|.|.+.++|+.||+.|+|+-|+
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~hP-dGvvtV~f~n~eeA~~ciq~m~GR~fd- 340 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DRHP-DGVVTVSFRNNEEADQCIQTMDGRWFD- 340 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-ccCC-CceeEEEeCChHHHHHHHHHhcCeeec-
Confidence 446888888632 223 24566667899999998764 3332 338999999999999999999999996
Q ss_pred CCCeEEEEe
Q 032280 132 SACSLLFPH 140 (144)
Q Consensus 132 ~g~~l~v~~ 140 (144)
|+.|..+.
T Consensus 341 -gRql~A~i 348 (382)
T KOG1548|consen 341 -GRQLTASI 348 (382)
T ss_pred -ceEEEEEE
Confidence 77776543
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.32 E-value=0.0015 Score=44.55 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=47.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEE-Eeec--------CCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSH-LRSS--------TQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSAC 134 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~-l~~~--------~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~ 134 (144)
.+.|-|=+.|.. ....+-+.|++||.|.+.. +.++ ...+..+-.|+|++..+|.+|+ .-||+.|. ...
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~-g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFS-GSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEET-TCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEc-CcE
Confidence 455777788887 4456778999999998764 1110 0123339999999999999999 67999994 123
Q ss_pred eEEEEee
Q 032280 135 SLLFPHS 141 (144)
Q Consensus 135 ~l~v~~s 141 (144)
.+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 3445554
No 117
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.29 E-value=0.00092 Score=49.98 Aligned_cols=79 Identities=10% Similarity=0.143 Sum_probs=50.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhc-CCCe---EEEEEeecCCCC----CcEEEEEeCCHHHHHHHHHHhcCCcc-CCCC
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFRE-FPGY---ESSHLRSSTQNS----QPFAFAVFSDQQSALGAMYALNNFAP-SDSA 133 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~-~G~v---~~v~l~~~~~~~----~~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g 133 (144)
+...|-|++||.++||+++.+.++. ++.- ..+.-....... .+-|||.|.+.++...-++.++|..| |.+|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4458999999999999999887776 6654 333322332221 12799999999999999999999999 5555
Q ss_pred CeE--EEEee
Q 032280 134 CSL--LFPHS 141 (144)
Q Consensus 134 ~~l--~v~~s 141 (144)
... .|+++
T Consensus 86 ~~~~~~VE~A 95 (176)
T PF03467_consen 86 NEYPAVVEFA 95 (176)
T ss_dssp -EEEEEEEE-
T ss_pred CCcceeEEEc
Confidence 533 44443
No 118
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.24 E-value=0.0012 Score=53.01 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=47.9
Q ss_pred HHHHHHHhhcCCCeEEEEEeecCCC--C-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 78 PREIYNLFREFPGYESSHLRSSTQN--S-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 78 e~~L~~~F~~~G~v~~v~l~~~~~~--~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
|+++++..++||.|..|.|.-.... . ..--||+|+..++|.+|+-.|||..|. |++++..|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG--Gr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG--GRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec--ceeeehee
Confidence 3567788899999999887554211 1 116899999999999999999999994 88887665
No 119
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.16 E-value=0.0039 Score=47.21 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=57.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCe
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACS 135 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~ 135 (144)
..+|.|++||..-++.||++...+.|.|+-..+.+|. ++.|+|...++.+-|++.|+...+...|.+
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-----~GvV~~~r~eDMkYAvr~ld~~~~~seGe~ 181 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-----VGVVEYLRKEDMKYAVRKLDDQKFRSEGET 181 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-----ceeeeeeehhhHHHHHHhhccccccCcCcE
Confidence 3468899999999999999999999999888775442 899999999999999999999888434443
No 120
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.06 E-value=0.00031 Score=55.08 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=43.6
Q ss_pred cCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 87 EFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 87 ~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
+||+|+++++..+.... .+-.||.|...++|++|++.|||.-| .|+.|..+++.
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAELSP 146 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeeecC
Confidence 99999998776542211 12689999999999999999999999 48889888875
No 121
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.04 E-value=0.0013 Score=57.36 Aligned_cols=69 Identities=17% Similarity=0.083 Sum_probs=58.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
..-|+||||+...+.++-++.+...+|.|.++.... |||++|.+......|+..++-..+++.+.+.++
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 356899999999999999999999999998876532 999999999999999999988888655554444
No 122
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.03 E-value=0.0025 Score=46.30 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=41.5
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
+|-+.|++||.+.=+|+.- + --.|+|.+.++|.+|+ .++|.++ +|+.|+|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~--~----~mwVTF~dg~sALaal-s~dg~~v--~g~~l~i~ 102 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG--D----TMWVTFRDGQSALAAL-SLDGIQV--NGRTLKIR 102 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET--T----CEEEEESSCHHHHHHH-HGCCSEE--TTEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeC--C----eEEEEECccHHHHHHH-ccCCcEE--CCEEEEEE
Confidence 5778899999988777653 2 4699999999999998 7999999 58888875
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.00 E-value=0.0011 Score=55.04 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=52.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc-----EEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP-----FAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~-----~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
.+.|-|.||...++.++++.||...|+|.+++|.-+-+.... .|||-|.|...+..|- .|.++.|
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvf 76 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVF 76 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhcccee
Confidence 347999999999999999999999999999998654222221 8999999999999886 4555555
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.00 E-value=0.0048 Score=38.52 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=42.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcC---CCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHh
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREF---PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 124 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~---G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~l 124 (144)
.+|+|.|+.. ++-++|+.+|..| .....|.-+-|. -|-|.|.|.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 4799999964 7888999999999 123566666543 5899999999999999765
No 125
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.94 E-value=0.001 Score=52.35 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=52.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~ln 125 (144)
..|||.||...++.+.|++-|+.||.|+...++.|.... ..=++|+|.....|.+|+...+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 679999999999999999999999999887777664332 3379999999999999998874
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.77 E-value=0.00057 Score=55.38 Aligned_cols=74 Identities=12% Similarity=0.249 Sum_probs=55.5
Q ss_pred ceEEEcCCCCCCCHHH-HH--HHhhcCCCeEEEEEeecCC-----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 65 RTLFVAGLPEDVKPRE-IY--NLFREFPGYESSHLRSSTQ-----NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~-L~--~~F~~~G~v~~v~l~~~~~-----~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
+-+||-+|+.++..++ |+ +.|.+||+|.+|....+.. ++.+-++|+|+..++|..||...+|..++ |+.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d--g~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD--GRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh--hhhh
Confidence 4578889998875554 43 5889999999988765431 11126999999999999999999999986 5556
Q ss_pred EEEe
Q 032280 137 LFPH 140 (144)
Q Consensus 137 ~v~~ 140 (144)
+..+
T Consensus 156 ka~~ 159 (327)
T KOG2068|consen 156 KASL 159 (327)
T ss_pred HHhh
Confidence 5544
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.71 E-value=0.014 Score=38.66 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=40.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
...||+ .|......||.++|+.||.|. |.-+.| . -|||...+++.|..|++.++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-T----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-T----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-T----EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-C----cEEEEeecHHHHHHHHHHhc
Confidence 346676 999999999999999999974 333422 2 69999999999999998886
No 128
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.62 E-value=0.0023 Score=52.52 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=51.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCC--eEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPG--YESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSD 131 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~--v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~ 131 (144)
..+|||||-|++|++||.+.....|- +.++++..++ +.+++||.|...+..+..+-++.|--+.|.+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 47999999999999999988876663 3444443332 3344599999999999999999998888853
No 129
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.60 E-value=0.01 Score=51.36 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=47.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhh--cCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 66 TLFVAGLPEDVKPREIYNLFR--EFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~--~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
.|.++.|++.+.+|+++.||+ .+-++.+|.+..+. -.||+|++..||++|.+.|.
T Consensus 177 IvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 177 IVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred EEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHH
Confidence 456799999999999999997 58889999987654 38999999999999987664
No 130
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.51 E-value=0.018 Score=41.86 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=53.5
Q ss_pred CcceEEEcCCCCCCCH-HH---HHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 63 EVRTLFVAGLPEDVKP-RE---IYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte-~~---L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.-.||.|.=|..++.. +| +-..++.||.|.+|.+. |+.-|.|.|+|..+|-+|+.+++...- |..++.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----GrqsavVvF~d~~SAC~Av~Af~s~~p---gtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQSAVVVFKDITSACKAVSAFQSRAP---GTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCceEEEEehhhHHHHHHHHhhcCCCC---CceEEe
Confidence 3468888877776533 33 44556899999999874 222799999999999999999987654 777887
Q ss_pred Eee
Q 032280 139 PHS 141 (144)
Q Consensus 139 ~~s 141 (144)
.|.
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 774
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.45 E-value=0.0014 Score=58.75 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
..|||+|+++..|.++|+.+++.+|.+.+.+++..+.++ ++.+||.|.+..++.++....++..+..++..+.
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~ 810 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQ 810 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccc
Confidence 478999999999999999999999999999887664432 3389999999999999998888887744443333
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.45 E-value=0.0086 Score=45.16 Aligned_cols=60 Identities=18% Similarity=0.046 Sum_probs=44.1
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc--CCccCCCCCeEEEEeec
Q 032280 77 KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--NFAPSDSACSLLFPHSM 142 (144)
Q Consensus 77 te~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln--G~~~~~~g~~l~v~~s~ 142 (144)
..+.|+++|..++.+.+......-+ -..|.|.+.++|.+|+..|+ |..+. |..+++-|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~--g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR----RIRVVFESPESAQRARQLLHWDGTSFN--GKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST--TSEET--TEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhcccccccC--CCceEEEEcc
Confidence 3478999999999998887765433 68999999999999999999 89884 7778887763
No 133
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.30 E-value=0.036 Score=46.21 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=45.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcC----CCeEEEEEeec-CCCCCcEEEEEeCCHHHHHHHHHH
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREF----PGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYA 123 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~----G~v~~v~l~~~-~~~~~~~aFV~F~~~~~A~~A~~~ 123 (144)
...-.|-..+||+++++.|+.++|..- |..+.|.++.. .++-.+-|||.|...++|+.|+..
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 334457789999999999999999632 34556655543 222233899999999999999854
No 134
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.24 E-value=0.009 Score=49.69 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=54.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCe---EEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGY---ESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v---~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
...|-..+||+..+.+||.++|..|..- ..|+++.|..+. .+-|||+|.+.++|..|....+.+.. +.+-|.|
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m--k~RYiEv 356 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM--KSRYIEV 356 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc--ccceEEE
Confidence 3467889999999999999999988753 336777774432 33899999999999998877665544 3454443
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.97 E-value=0.00046 Score=61.66 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=54.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEee--cCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS--STQNSQPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~--~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
.++||+||+..+.+.+|...|..+|.+..+++.. +++.-+++||++|.+.+++.+|+...++..+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3789999999999999999999999988877652 3444455999999999999999977666655
No 136
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.82 E-value=0.0068 Score=54.54 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=62.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeecC
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSMA 143 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~~ 143 (144)
+.++.|+.-+.+...|..+|++||.|.+....++-. .|.|+|.+.+.|..|+++|+|+++...|...+|.++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 456677777888999999999999999887765543 89999999999999999999999855677788887653
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.65 E-value=0.046 Score=46.27 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=57.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREF-PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~-G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
++.|+|=.+|..++-.||-.+...+ ..|.++++++|...++=...|.|.+.++|..-.+.+||+.|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 7899999999999999999888755 45789999986554443689999999999999999999998
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.65 E-value=0.024 Score=45.71 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=41.8
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 69 VAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 69 VgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
|-+.+..-. ..|.++|++||.|++.... .+..+-+|.|.++.+|++|| ..||+.|+
T Consensus 202 VfGFppg~~-s~vL~~F~~cG~Vvkhv~~----~ngNwMhirYssr~~A~KAL-skng~ii~ 257 (350)
T KOG4285|consen 202 VFGFPPGQV-SIVLNLFSRCGEVVKHVTP----SNGNWMHIRYSSRTHAQKAL-SKNGTIID 257 (350)
T ss_pred EeccCccch-hHHHHHHHhhCeeeeeecC----CCCceEEEEecchhHHHHhh-hhcCeeec
Confidence 334444333 3577899999999876542 23339999999999999999 57999995
No 139
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.38 E-value=0.06 Score=33.96 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=38.0
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 75 DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 75 ~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
.++-++++..+++|+- ..|+. + ++| =||.|.|..+|++|.+..||+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d-~tG---fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--D-RTG---FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--c-CCE---EEEEECChHHHHHHHHhcCCCEE
Confidence 4677899999999974 44432 3 222 48999999999999999999987
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.29 E-value=0.13 Score=32.81 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=39.1
Q ss_pred eEEEc-CCCCCCCHHHHHHHhhcCCCe-----EEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 66 TLFVA-GLPEDVKPREIYNLFREFPGY-----ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 66 tLfVg-nLp~~vte~~L~~~F~~~G~v-----~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
+|||. +--..++..+|-.++...+++ -+|++. .. |+||+-... .|+.+++.|++..+ +|+.|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~----~S~vev~~~-~a~~v~~~l~~~~~--~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DN----FSFVEVPEE-VAEKVLEALNGKKI--KGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-----EEEEE-TT--HHHHHHHHTT--S--SS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--ee----EEEEEECHH-HHHHHHHHhcCCCC--CCeeEEEE
Confidence 46662 344568899999999888665 455553 12 899997754 78899999999999 48888887
Q ss_pred e
Q 032280 140 H 140 (144)
Q Consensus 140 ~ 140 (144)
-
T Consensus 73 ~ 73 (74)
T PF03880_consen 73 R 73 (74)
T ss_dssp E
T ss_pred E
Confidence 3
No 141
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.12 Score=44.95 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=61.7
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHhhcC----CCeEEEEEeecC-----------CCC----------------------
Q 032280 62 DEVRTLFVAGLPED-VKPREIYNLFREF----PGYESSHLRSST-----------QNS---------------------- 103 (144)
Q Consensus 62 ~~~~tLfVgnLp~~-vte~~L~~~F~~~----G~v~~v~l~~~~-----------~~~---------------------- 103 (144)
..+++|-|-||.|+ +..++|.-+|+.| |.|.+|.|-... .+.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45688999999997 8899999999977 578888873210 000
Q ss_pred ---------------Cc-EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 104 ---------------QP-FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 104 ---------------~~-~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
+. ||.|+|.+...|.+..+..+|..|...+..|-+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11 89999999999999999999999965666665554
No 142
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.17 E-value=0.011 Score=50.06 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=47.6
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 77 KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 77 te~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
+.++|...|.+||+|..|.+.+... -|.|+|.+..+|-+|. ...|..|+ ++.|+|-|-
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~----~a~vTF~t~aeag~a~-~s~~avln--nr~iKl~wh 443 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSL----HAVVTFKTRAEAGEAY-ASHGAVLN--NRFIKLFWH 443 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchh----hheeeeeccccccchh-ccccceec--CceeEEEEe
Confidence 4567999999999999999865422 7999999999997775 57888885 788888884
No 143
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.13 E-value=0.016 Score=51.35 Aligned_cols=77 Identities=22% Similarity=0.181 Sum_probs=56.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeec-CCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYES-SHLRSS-TQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~-v~l~~~-~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.....|||-.||..+++.++-+.|...-.|++ |.|.+. +....+-|||+|...+++.+|...-.-..+ ..+.|+|+
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~--G~r~irv~ 509 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYP--GHRIIRVD 509 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhccccccc--CceEEEee
Confidence 45678999999999999999999999888887 665443 233344899999998888888633222222 35667776
Q ss_pred e
Q 032280 140 H 140 (144)
Q Consensus 140 ~ 140 (144)
-
T Consensus 510 s 510 (944)
T KOG4307|consen 510 S 510 (944)
T ss_pred c
Confidence 4
No 144
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=93.87 E-value=0.26 Score=39.82 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=41.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCH-------HHHHHHHHHhc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQ-------QSALGAMYALN 125 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~-------~~A~~A~~~ln 125 (144)
.-||++||++++.-.||+..+++-|.+- .++ ..++..+-||++|-|. .+..++++.+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~i--swkg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSI--SWKGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeE--eeecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4599999999999999999999887641 122 2344444799999875 44556655554
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.57 E-value=0.071 Score=42.81 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=51.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
....++|+|++.+++.+.++..++..+|.+..+.+.... ...++++.+.|...+.+..|+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~ 151 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESG 151 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhh
Confidence 346789999999999999999999999988777765532 3344499999999999999985443
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=91.81 E-value=0.042 Score=42.66 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=59.5
Q ss_pred CCCCCcceEEEcC----CCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 59 GSYDEVRTLFVAG----LPEDVKPREIYNLFREFPGYESSHLRSSTQ-NSQPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 59 ~~~~~~~tLfVgn----Lp~~vte~~L~~~F~~~G~v~~v~l~~~~~-~~~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
...+..++++.|+ |...++++.+++.|+..|.++.+++-.+.. .++.++|+++...++.-.++..++|...
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 3455667899999 999999999999999999999998865533 3444999999999999999999988865
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.50 E-value=0.53 Score=40.84 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=45.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhc----------------------------CCCeEEEEEeecCC--CCCcEEEEEeCCH
Q 032280 65 RTLFVAGLPEDVKPREIYNLFRE----------------------------FPGYESSHLRSSTQ--NSQPFAFAVFSDQ 114 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~----------------------------~G~v~~v~l~~~~~--~~~~~aFV~F~~~ 114 (144)
.++-|+||+..-+..+|.++.+. .|...-+-|..|-+ .+-+||||.|.+.
T Consensus 362 tt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp 441 (549)
T KOG4660|consen 362 TTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSP 441 (549)
T ss_pred hhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCH
Confidence 46778888887777777776642 23333333333422 2333999999999
Q ss_pred HHHHHHHHHhcCCcc
Q 032280 115 QSALGAMYALNNFAP 129 (144)
Q Consensus 115 ~~A~~A~~~lnG~~~ 129 (144)
+++..+.++.||+.+
T Consensus 442 ~ai~~F~kAFnGk~W 456 (549)
T KOG4660|consen 442 EAIIRFYKAFNGKKW 456 (549)
T ss_pred HHHHHHHHHHcCCch
Confidence 999999999999987
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.36 E-value=0.057 Score=45.07 Aligned_cols=63 Identities=17% Similarity=0.040 Sum_probs=50.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
.+|++|++|...+...++-++|..+|+|.-.++. .+....+|-|+|....+...|+ .++|..+
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a--sk~~s~~c~~sf~~qts~~hal-r~~gre~ 213 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA--SKSRSSSCSHSFRKQTSSKHAL-RSHGRER 213 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh--ccCCCcchhhhHhhhhhHHHHH-Hhcchhh
Confidence 3799999999999999999999999998766553 2333448889999999988887 4566665
No 149
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=87.14 E-value=0.52 Score=44.69 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=29.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST 100 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~ 100 (144)
.++++|--+-..+..+.|+.+-+.++..-++....|+
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~Dk 108 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVDK 108 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhhhhhhhh
Confidence 4688888888999999999999999987766554443
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.50 E-value=0.029 Score=47.31 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=60.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
.+|.+-|.|++....++-|..|..+||.++.|..+. .......--|+|.+.+.+..||..|||..|. ...+++.|
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn-t~~etavvnvty~~~~~~~~ai~kl~g~Q~e--n~~~k~~Y 153 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN-TDSETAVVNVTYSAQQQHRQAIHKLNGPQLE--NQHLKVGY 153 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc-cchHHHHHHHHHHHHHHHHHHHHhhcchHhh--hhhhhccc
Confidence 357788999999999999999999999999997743 2322225668899999999999999999984 55566654
No 151
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.70 E-value=0.31 Score=39.33 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=44.0
Q ss_pred ceEEEcCCCCC------------CCHHHHHHHhhcCCCeEEEEEee-c-------CC-CC---CcE---------EEEEe
Q 032280 65 RTLFVAGLPED------------VKPREIYNLFREFPGYESSHLRS-S-------TQ-NS---QPF---------AFAVF 111 (144)
Q Consensus 65 ~tLfVgnLp~~------------vte~~L~~~F~~~G~v~~v~l~~-~-------~~-~~---~~~---------aFV~F 111 (144)
.|||+.+||-. -+|+-|+..|+.||.|..|.+.. | .+ ++ .+| |||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 46777776642 46788999999999998887622 1 11 00 002 45666
Q ss_pred CCHHHHHHHHHHhcCCcc
Q 032280 112 SDQQSALGAMYALNNFAP 129 (144)
Q Consensus 112 ~~~~~A~~A~~~lnG~~~ 129 (144)
..-..-..|+.+|.|+.+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 666667788999999887
No 152
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=84.15 E-value=0.2 Score=43.49 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=53.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
.+||+.|+..+++-++|..+.+.+-.+..+-+.... +.-..++.|+|+-......|+.+|||..+.
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 479999999999999999999999888777664321 111117999999999999999999999874
No 153
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=84.13 E-value=5.5 Score=25.01 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 79 REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 79 ~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
+++.+.++++| +....+. ..+++++.|+.+++.+.++++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~s--GsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS--GSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE--TTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC--CCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 35677778898 4555552 23334489999999999998888774
No 154
>PHA01732 proline-rich protein
Probab=83.57 E-value=2.6 Score=28.01 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=8.5
Q ss_pred hhcCCCeEEEEEeec
Q 032280 85 FREFPGYESSHLRSS 99 (144)
Q Consensus 85 F~~~G~v~~v~l~~~ 99 (144)
-...|+-.+++|-.+
T Consensus 58 qq~a~gTasLrIpkq 72 (94)
T PHA01732 58 QQKAGGTASLRIPKQ 72 (94)
T ss_pred hhhccCcceeEeecc
Confidence 344556666676544
No 155
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=83.08 E-value=2.7 Score=27.82 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=33.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeC
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFS 112 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~ 112 (144)
.-+||||++..+.|.-.+.+.+..+. -++.++......++|+|-+.-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~-G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGD-GSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCC-ccEEEEEccCCCCCEEEEEeC
Confidence 35999999999999877777665554 445555554445569888773
No 156
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=81.86 E-value=14 Score=32.11 Aligned_cols=32 Identities=6% Similarity=0.045 Sum_probs=19.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEE
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSH 95 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~ 95 (144)
.+.+-+..|+..-..++|.+--++=|.++.+.
T Consensus 481 l~~ve~t~~~~~dgR~~LmaqIRqG~~Lk~v~ 512 (569)
T KOG3671|consen 481 LKKVETTALSSGDGRDALMAQIRQGGQLKKVD 512 (569)
T ss_pred ccceeeccCcCcccHHHHHHHHHhcccccccc
Confidence 34566677876666666665555545555443
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=80.01 E-value=5 Score=32.47 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=44.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC---------CCCcEEEEEeCCHHHHH
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ---------NSQPFAFAVFSDQQSAL 118 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~---------~~~~~aFV~F~~~~~A~ 118 (144)
..|.|...|+..+++-.++-.-|.+||.|++|-++.+.. +......+.|-+++.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 457799999999999999999999999999999986541 11226788888877654
No 158
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=79.62 E-value=3.6 Score=30.35 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=44.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhc
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~ln 125 (144)
......+++++++..+++.++..+|..+|.+....+......... +.++.+.....+..+....+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGN 288 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcccc
Confidence 345678999999999999999999999999977766544333322 34445544444444444333
No 159
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.93 E-value=7.1 Score=33.12 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=42.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHH
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMY 122 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~ 122 (144)
-..|-|.+++.....+||..+|+.|++ ..++|..-.. ..+|-.|++...|..|+-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDd---thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDD---THALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeec---ceeEEeecchHHHHHHhh
Confidence 357889999999999999999999987 4445433211 179999999999999983
No 160
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=76.82 E-value=4.7 Score=27.34 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=33.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCH
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQ 114 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~ 114 (144)
.-||||+++..+.|.--+.+-+.++. -++.++......++|+|-++-+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCCCCCcEEEecCCC
Confidence 35999999999998766666666654 45555554444456888887643
No 161
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=76.73 E-value=2.2 Score=29.76 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=24.2
Q ss_pred CCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHH
Q 032280 76 VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQ 115 (144)
Q Consensus 76 vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~ 115 (144)
++.++|++.|+.|..++ ++...+..+..+++.|+|.+.-
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCCh
Confidence 45688999999999875 5555666666669999998743
No 162
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=76.04 E-value=4.7 Score=26.81 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHh
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLF 85 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F 85 (144)
-..|||-|+||+...+|++|++..
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 346899999999999999999764
No 163
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=75.85 E-value=7.3 Score=24.24 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHHhhcCCCeEEEEE
Q 032280 79 REIYNLFREFPGYESSHL 96 (144)
Q Consensus 79 ~~L~~~F~~~G~v~~v~l 96 (144)
.+||++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999865544
No 164
>PF14893 PNMA: PNMA
Probab=75.48 E-value=4.2 Score=33.43 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=33.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEee---cCCCCCcEEEEEeCCH
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRS---STQNSQPFAFAVFSDQ 114 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~-~G~v~~v~l~~---~~~~~~~~aFV~F~~~ 114 (144)
+..|.|.|.+||.+++++||++.+.. .-.+-..+++. .+..+..-++|+|.+.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 45688999999999999999987753 22222333321 1222233788888753
No 165
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=74.98 E-value=15 Score=31.38 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=28.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 106 FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 106 ~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
||.|++++...+.....+.+|..+...+..+-+.|
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 79999999999999999999999855566665554
No 166
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.82 E-value=17 Score=26.68 Aligned_cols=51 Identities=8% Similarity=0.184 Sum_probs=37.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcC---CCeEEEEEeecC------------CCCCcEEEEEeCCHH
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREF---PGYESSHLRSST------------QNSQPFAFAVFSDQQ 115 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~---G~v~~v~l~~~~------------~~~~~~aFV~F~~~~ 115 (144)
..+|+-.++..++|++.+++-++- +++.+|+|-+.+ .+..+|-+|.|++-.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 578888999999999999988754 567777775432 222338889998754
No 167
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=72.92 E-value=2.8 Score=23.26 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHhhcCCC
Q 032280 74 EDVKPREIYNLFREFPG 90 (144)
Q Consensus 74 ~~vte~~L~~~F~~~G~ 90 (144)
.++++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 37899999999998764
No 168
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.78 E-value=3.4 Score=31.20 Aligned_cols=63 Identities=21% Similarity=0.175 Sum_probs=45.3
Q ss_pred cceEEEcCCCCCCCH-----HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 64 VRTLFVAGLPEDVKP-----REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 64 ~~tLfVgnLp~~vte-----~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
..++.+-++..++-. ...+++|.+|-+....++++..+ +--|.|.+.+.|..|...+.++.|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfr----rvRi~f~~p~~a~~a~i~~~~~~f~ 77 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFR----RVRINFSNPEAAADARIKLHSTSFN 77 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhc----eeEEeccChhHHHHHHHHhhhcccC
Confidence 345777777776532 23556777777665555554333 6678999999999999999999995
No 169
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=71.36 E-value=18 Score=21.28 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=39.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCH----HHHHHHHHH
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQ----QSALGAMYA 123 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~----~~A~~A~~~ 123 (144)
||.|.||.=.-....+++.+.+.-+|.++.+-...+ -.-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~----~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK----TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT----EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC----EEEEEEecCCCCHHHHHHHHHH
Confidence 577888887778888999999999999998844332 677888754 444455443
No 170
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=67.11 E-value=10 Score=25.17 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=30.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEeecCCCCCcEEEEEeCC
Q 032280 65 RTLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRSSTQNSQPFAFAVFSD 113 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~-~G~v~~v~l~~~~~~~~~~aFV~F~~ 113 (144)
.-+|||+++..+.|.--+.+-+. .+. -++.++....+.++|.|-++-+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeCCCCCCcEEEecCC
Confidence 35999999999988755554444 333 3445554444444588877654
No 171
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=64.71 E-value=24 Score=24.20 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=28.1
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHH
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 121 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~ 121 (144)
||.++.++.|- .+-.|..+..++.-||++++.|.++.-+++
T Consensus 28 E~~a~lk~agi-~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 28 ELLALLKEAGI-RNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHcCC-ceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 46678888874 555555566666669999999766555444
No 172
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=59.58 E-value=7.1 Score=30.73 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHL 96 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l 96 (144)
..+.++||+-|++-..+++.|.++.+++|.+..+.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 346789999999999999999999999997655443
No 173
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=58.52 E-value=16 Score=30.52 Aligned_cols=70 Identities=10% Similarity=0.194 Sum_probs=47.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCC----CCcEEEEEeCCHHHHHHHHHHhcCCcc-CCCC
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESS-HLRSSTQN----SQPFAFAVFSDQQSALGAMYALNNFAP-SDSA 133 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v-~l~~~~~~----~~~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g 133 (144)
...+-|.+||...++++|.+-...+-.=... .+.....+ ..+.+||.|...++...-.+.++|.+| +.+|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 3467789999999999887766554331111 11111111 122799999999999888899999998 5455
No 174
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=52.15 E-value=58 Score=28.13 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhh----cCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcC
Q 032280 66 TLFVAGLPEDVKPREIYNLFR----EFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~----~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG 126 (144)
.+-++.-..+.+.-+|..+|. .+|-|.++.++...... ....++.|.|.++|..|+..+..
T Consensus 191 i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 191 ALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred EEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 344443222334457778776 67778888886653322 22678899999999999887653
No 175
>PRK11901 hypothetical protein; Reviewed
Probab=51.46 E-value=1.4e+02 Score=24.68 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=38.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc-E--EEEEeCCHHHHHHHHHHhcC
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP-F--AFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~-~--aFV~F~~~~~A~~A~~~lnG 126 (144)
...||=+..+ -+++.|+++-++.+ +..+.+....+.++. | -+=.|.+.++|..|++.|--
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3456666554 45788888888775 455555444444444 2 22258899999999988754
No 176
>PF15063 TC1: Thyroid cancer protein 1
Probab=49.16 E-value=11 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=23.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCe
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGY 91 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v 91 (144)
.|+=-++||=.+++.+.|+.||.+-|..
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 3445578999999999999999999975
No 177
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=45.91 E-value=71 Score=19.76 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=36.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD 113 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~ 113 (144)
.+|.|.++.=.--...+++..+...++.++.+-..++ -+.|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~----~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKG----TATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccC----eEEEEEcC
Confidence 4677888877777788999999999999998866544 58999998
No 178
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=45.51 E-value=42 Score=20.97 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCC-eEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 79 REIYNLFREFPG-YESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 79 ~~L~~~F~~~G~-v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
++|++-|...|- |.++.-+.++.++.+ .-||+.+...+ ..+.|+=+.+ ++..++||.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l--~~~~V~vE~ 61 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTL--CGQRVKVER 61 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhh--CCeEEEEec
Confidence 467777887774 566655544433333 78888886655 2233444445 466677764
No 179
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=45.48 E-value=53 Score=30.15 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=3.1
Q ss_pred HHHHHhh
Q 032280 80 EIYNLFR 86 (144)
Q Consensus 80 ~L~~~F~ 86 (144)
++++.|.
T Consensus 405 ~~ee~Fk 411 (830)
T KOG1923|consen 405 RFEEQFK 411 (830)
T ss_pred HHHHHHH
Confidence 3444443
No 180
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=44.18 E-value=32 Score=21.40 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 106 FAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 106 ~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
+.+|.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 789999999999999998886543
No 181
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=42.57 E-value=8 Score=24.21 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCeEEE-EEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 79 REIYNLFREFPGYESS-HLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 79 ~~L~~~F~~~G~v~~v-~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
++|++.|..++...++ ++ .+|.-|+|.++|..++..++
T Consensus 27 ~~v~~~~~~~~~f~k~vkL---------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL---------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh---------hhccCCCCHHHHHHHHHHhh
Confidence 5788777766544322 22 68999999999888876654
No 182
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=42.20 E-value=11 Score=26.64 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHhh---cCCCeEEEEEeecCCCCCc--EEEEEeCCHHH
Q 032280 73 PEDVKPREIYNLFR---EFPGYESSHLRSSTQNSQP--FAFAVFSDQQS 116 (144)
Q Consensus 73 p~~vte~~L~~~F~---~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~ 116 (144)
|+.+|-.||+++|+ .|-+|..-.+.+|.-..+. .||..|.....
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~~ 131 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQF 131 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccchh
Confidence 45679999999998 4666655555555332222 79999986643
No 183
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=41.71 E-value=1.1e+02 Score=20.86 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHhhcCCCeEEEEEeecC-----C----------CCCc--EEEEEeCCHHHHHHHHHHhc
Q 032280 81 IYNLFREFPGYESSHLRSST-----Q----------NSQP--FAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 81 L~~~F~~~G~v~~v~l~~~~-----~----------~~~~--~aFV~F~~~~~A~~A~~~ln 125 (144)
.-.+|..+|.+.-+...-+. . .+.. |++|+|.|.+..+++.+.+.
T Consensus 25 a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~m 86 (103)
T PF07237_consen 25 AAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKMM 86 (103)
T ss_dssp HHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhh
Confidence 45789999987655443221 1 1111 99999999999998876553
No 184
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=40.12 E-value=36 Score=20.45 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeec
Q 032280 75 DVKPREIYNLFREFPGYESSHLRSS 99 (144)
Q Consensus 75 ~vte~~L~~~F~~~G~v~~v~l~~~ 99 (144)
.++.+++.+.|++.|+..+|.|+.|
T Consensus 29 ~~~~~~vl~~l~~nGg~CDCEVl~N 53 (53)
T PF10905_consen 29 QLDWEDVLEWLRENGGYCDCEVLYN 53 (53)
T ss_pred CCCHHHHHHHHHHcCCCcceeeecC
Confidence 3455889999999999999988753
No 185
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=39.12 E-value=26 Score=30.63 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=23.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 106 FAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 106 ~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
|+++.|++.+.+.+|++.++|..+
T Consensus 65 ~~~~~~et~~~~~ka~~~v~g~~~ 88 (534)
T KOG2187|consen 65 YAYVTFETPSDAGKAINLVDGLLY 88 (534)
T ss_pred ceEEEEeccchhhhHHHHHhhhhh
Confidence 999999999999999999999877
No 186
>PRK12450 foldase protein PrsA; Reviewed
Probab=39.03 E-value=79 Score=25.46 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=32.4
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc--CCcc
Q 032280 75 DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--NFAP 129 (144)
Q Consensus 75 ~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln--G~~~ 129 (144)
.+|++|++++|..+.. .++ ...|.+.+.+.|+.+++.|. |..|
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~----------~~~I~~~~~~~A~~i~~~l~~~G~dF 176 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMT----------AEIMQFEKEEDAKAALEAVKAEGADF 176 (309)
T ss_pred CCCHHHHHHHHHHhCc--cce----------eEEEEeCCHHHHHHHHHHHHhcCCCH
Confidence 4899999999998742 111 23578889999999999995 6555
No 187
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=38.44 E-value=91 Score=18.85 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=29.1
Q ss_pred HHHHHhhcCCCeEEEEEeec--CCCC-CcEEEEEeCCHHHHHHHH-HHhcCCcc
Q 032280 80 EIYNLFREFPGYESSHLRSS--TQNS-QPFAFAVFSDQQSALGAM-YALNNFAP 129 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~--~~~~-~~~aFV~F~~~~~A~~A~-~~lnG~~~ 129 (144)
||++...++..|.++.++.. ...+ ..+|||.- +.++-.+.+ +.|.+...
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~~~i~~~~~~~l~~~~~ 53 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DEEEIRDHLRDKLPPYMV 53 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HHHHHHHHHHHHS-GGGS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-eecccccchhhhCCCcce
Confidence 57888899999988876543 2222 22899988 333333333 33544444
No 188
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=38.40 E-value=25 Score=27.45 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=10.4
Q ss_pred CCCCcceEEEcCCC
Q 032280 60 SYDEVRTLFVAGLP 73 (144)
Q Consensus 60 ~~~~~~tLfVgnLp 73 (144)
..+++-.||.|.|.
T Consensus 73 ~~DdIfCiF~G~L~ 86 (228)
T PF12481_consen 73 GVDDIFCIFLGSLE 86 (228)
T ss_pred ccCCEEEEEecchh
Confidence 45778899999653
No 189
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=38.09 E-value=11 Score=23.72 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=19.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhc
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFRE 87 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~ 87 (144)
...+|++|||++|...-++.=+.+++.
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred HHcCceEEECCCChHHHHcCcchHHHH
Confidence 456799999999998776665555443
No 190
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=37.56 E-value=1.1e+02 Score=20.64 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=43.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhh-cCCC-eEEEEEeecCCCC---CcEEEEEeCCHHHHHHHHHHhcCC
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFR-EFPG-YESSHLRSSTQNS---QPFAFAVFSDQQSALGAMYALNNF 127 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~-~~G~-v~~v~l~~~~~~~---~~~aFV~F~~~~~A~~A~~~lnG~ 127 (144)
++..+||. ++-..++-.-|-+.|+ +-|+ ..+.++.+|.+.- +-=+=..|++-+..++..+.+-|.
T Consensus 32 qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 32 QDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred CCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 44556655 6777778788888887 4454 5677887774321 114667788888888888777664
No 191
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=37.41 E-value=41 Score=23.43 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHhhcCCCeEEEEEe
Q 032280 74 EDVKPREIYNLFREFPGYESSHLR 97 (144)
Q Consensus 74 ~~vte~~L~~~F~~~G~v~~v~l~ 97 (144)
.++|+++|++.|.+|-.-.++-++
T Consensus 43 ~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 43 SKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred ccCCHHHHHHHHHhhccccCeEEE
Confidence 478999999999999765555443
No 192
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=37.32 E-value=68 Score=24.38 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=35.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEeecCCC---CCcEEEEEeCCHHHHHHHHHH
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREF-PGYESSHLRSSTQN---SQPFAFAVFSDQQSALGAMYA 123 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~-G~v~~v~l~~~~~~---~~~~aFV~F~~~~~A~~A~~~ 123 (144)
|++|.. .|++.|.++-..- |.+..+...+.... .++--||+|.+.+.|.++++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 566665 6666666655433 57777777554322 223689999999999987654
No 193
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=37.31 E-value=66 Score=23.44 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=33.2
Q ss_pred ceEEEcCCCCCCCHHH---HHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcC
Q 032280 65 RTLFVAGLPEDVKPRE---IYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~---L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG 126 (144)
-..|+|+|. +-.+. |++..........-.++..+.....-+.|+|.-..+|..-++.|--
T Consensus 5 fla~~G~l~--~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 5 FLAYIGGLR--MFQYKLDDIKNWLASLYKPRISDLKVRKVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEEECChh--hhHHHHHHHHHHHHHHHhcccccceeeccccCceEEEEEechHHHHHHHHHHhh
Confidence 356789998 33333 3333332222222223323332333899999999888887777654
No 194
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=36.76 E-value=52 Score=20.55 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=23.3
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEE
Q 032280 77 KPREIYNLFREFPGYESSHLRSSTQNSQPFAFA 109 (144)
Q Consensus 77 te~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV 109 (144)
-|.+|++.|-.-..|.++.|.-.|+-.++-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 456788899888999999886554433335665
No 195
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=36.31 E-value=1.1e+02 Score=19.33 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=33.4
Q ss_pred EEEcCCCCCCCHHHHHHHh-------hcCCCeEEEEEeecCCCC---Cc---EEEEEeCCHHHHH
Q 032280 67 LFVAGLPEDVKPREIYNLF-------REFPGYESSHLRSSTQNS---QP---FAFAVFSDQQSAL 118 (144)
Q Consensus 67 LfVgnLp~~vte~~L~~~F-------~~~G~v~~v~l~~~~~~~---~~---~aFV~F~~~~~A~ 118 (144)
+..-.|..++++++++++. .+..+|+++.+..+.... ++ .-.++|+|.++-+
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~ 68 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLD 68 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHH
Confidence 3344677788887765543 567788888887663322 23 4556788877655
No 196
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=36.23 E-value=92 Score=24.54 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
++++.+.++|. +.+ .+.++-.|..|++.+.|+++.+.|.
T Consensus 222 ~~~~~l~~~ga---~~m----SGSG~tvF~l~~~~~~a~~~~~~l~ 260 (271)
T PRK00343 222 QALSWLLEYAP---SRM----TGTGACVFAEFDTEAEAEQVLAQLP 260 (271)
T ss_pred HHHHHHHhCCC---eEE----eccccceEEEcCCHHHHHHHHHHhh
Confidence 45556667776 333 2233378889999999999888776
No 197
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=35.83 E-value=89 Score=21.06 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=23.6
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD 113 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~ 113 (144)
+|.+.++..| |.+..|-++..++.-|++++..+
T Consensus 27 Ev~~~l~~~G-i~~ysIf~~g~~~~LF~~~E~~~ 59 (106)
T PF05336_consen 27 EVLAALREAG-IRNYSIFRDGDTGRLFMYMETDD 59 (106)
T ss_dssp HHHHHHHHCT-EEEEEEEEETTTTEEEEEEEECT
T ss_pred HHHHHHHHCC-CeEEEEEEeCCCCEEEEEEEecC
Confidence 4556666665 67777766655556699999999
No 198
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=35.74 E-value=69 Score=18.10 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=29.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHH
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSA 117 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A 117 (144)
++|+.+.....+.++|+++...+|+-..-.+ + ...-+|...+....
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~--~----~~~thvI~~~~~~~ 48 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKLGGKVTSSV--S----KKTTHVIVGSDAGP 48 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHcCCEEeccc--c----CCceEEEECCCCCc
Confidence 5677776657889999999999998543322 1 11445555554443
No 199
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=35.73 E-value=33 Score=26.74 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=22.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhh--cCCCe
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFR--EFPGY 91 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~--~~G~v 91 (144)
...++|||||++++..-|.+++. .+|.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 45688999999999999999987 44443
No 200
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=35.70 E-value=1.3e+02 Score=25.03 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=35.3
Q ss_pred CCCHHHHHHHhh----cCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhc
Q 032280 75 DVKPREIYNLFR----EFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 75 ~vte~~L~~~F~----~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~ln 125 (144)
+...-+|..+|. .+|-|.++.++...... ....++.|.|.++|.+|+..+.
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 344446778875 36778888886654332 2267889999999999986654
No 201
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=35.70 E-value=1.2e+02 Score=19.31 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=39.2
Q ss_pred EcCCCCCCCHHHHHHHhhcC-------CCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 69 VAGLPEDVKPREIYNLFREF-------PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 69 VgnLp~~vte~~L~~~F~~~-------G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
..+|+..+|.++|.++-.+- .+|.=++--.+...++.||..+=.|.++..++-+.- |...
T Consensus 5 er~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 5 ERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 46788889999988776533 333333322234445558888888888888776554 7766
No 202
>smart00457 MACPF membrane-attack complex / perforin.
Probab=35.47 E-value=65 Score=23.83 Aligned_cols=22 Identities=9% Similarity=0.274 Sum_probs=19.6
Q ss_pred EcCCCCCCCHHHHHHHhhcCCC
Q 032280 69 VAGLPEDVKPREIYNLFREFPG 90 (144)
Q Consensus 69 VgnLp~~vte~~L~~~F~~~G~ 90 (144)
+.+||...+..+...+|+.||.
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGT 51 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGT 51 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCC
Confidence 4588888999999999999998
No 203
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=35.23 E-value=4.4 Score=21.93 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=15.5
Q ss_pred HHHhhcCCCeEEEEEeecCCCCCc-EEEEE
Q 032280 82 YNLFREFPGYESSHLRSSTQNSQP-FAFAV 110 (144)
Q Consensus 82 ~~~F~~~G~v~~v~l~~~~~~~~~-~aFV~ 110 (144)
+-++++||+...-++..|.-++.+ |.||.
T Consensus 4 rlly~rfgk~ikrrilidnfsnfc~ynfi~ 33 (37)
T PF08199_consen 4 RLLYSRFGKFIKRRILIDNFSNFCHYNFIG 33 (37)
T ss_pred HHHHHHHHHHHHHHHhhhccccceeeeeee
Confidence 456677777655454444443433 45554
No 204
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=34.91 E-value=1.3e+02 Score=19.64 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=37.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhcC-C-CeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHH
Q 032280 67 LFVAGLPEDVKPREIYNLFREF-P-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMY 122 (144)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~~-G-~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~ 122 (144)
-|+-....+.+..++++.+++. | .|.+|+...... +..=|||.+....+|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcEEEEEEeCCCCcHHHHHH
Confidence 3444567789999999988874 4 356666554332 22269999998888776543
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=34.66 E-value=66 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=25.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEe
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLR 97 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~ 97 (144)
....|||||++++..-|..+++..-.+.+..+.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 356799999999999999998876655444443
No 206
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=34.02 E-value=1.2e+02 Score=18.76 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCC-eEEEEEeecCCCCCc-EEEEEeC-CHHHHHHHHHHhcC
Q 032280 79 REIYNLFREFPG-YESSHLRSSTQNSQP-FAFAVFS-DQQSALGAMYALNN 126 (144)
Q Consensus 79 ~~L~~~F~~~G~-v~~v~l~~~~~~~~~-~aFV~F~-~~~~A~~A~~~lnG 126 (144)
.++-+.|+.+|- +.++.-+-.+..... +-||+++ +.+..++|++.|+.
T Consensus 15 ~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 15 ARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 345667777763 444433222222222 5678887 44556677777764
No 207
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=33.35 E-value=47 Score=23.12 Aligned_cols=42 Identities=12% Similarity=0.021 Sum_probs=29.4
Q ss_pred EEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEE
Q 032280 68 FVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFA 109 (144)
Q Consensus 68 fVgnLp~~-vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV 109 (144)
-|-|||.. .+++-|+.+-+.+|++.++.....+.....|+=|
T Consensus 108 ri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 108 RIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred hhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCcccccEEEE
Confidence 35699988 5777899999999999998764333323325443
No 208
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=33.22 E-value=63 Score=26.66 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCC
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFP 89 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G 89 (144)
+-..++.|||+|-.|.--++|.+.++++|
T Consensus 58 rLG~~~afiGkvGdD~fG~~l~~~L~~~~ 86 (330)
T KOG2855|consen 58 RLGGRVAFIGKVGDDEFGDDLLDILKQNG 86 (330)
T ss_pred hcCcceeeeecccchhhHHHHHHHHhhCC
Confidence 34568999999999999999999999865
No 209
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=32.22 E-value=51 Score=22.59 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=16.5
Q ss_pred EEEEEeCCHHHHHHHHHHh
Q 032280 106 FAFAVFSDQQSALGAMYAL 124 (144)
Q Consensus 106 ~aFV~F~~~~~A~~A~~~l 124 (144)
|+.++|.+.+.+++|...+
T Consensus 68 FsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 68 FSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEcCchhHHHHHHHHh
Confidence 9999999999999887554
No 210
>PRK10905 cell division protein DamX; Validated
Probab=31.79 E-value=92 Score=25.68 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=36.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc-E--EEEEeCCHHHHHHHHHHhc
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP-F--AFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~-~--aFV~F~~~~~A~~A~~~ln 125 (144)
...+|=|+.+. +++.|+++-++.| +....+....+.++. | -+=.|.+.++|++|++.|-
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 34567666664 5577888777775 344443333333433 2 2235889999999998874
No 211
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=30.55 E-value=43 Score=21.35 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=16.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcC
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREF 88 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~ 88 (144)
...++-+|||. +++.+.|++.|..+
T Consensus 69 ~~~~~lV~IG~---~ld~~~l~~~l~~c 93 (94)
T PF07683_consen 69 DRDSRLVFIGK---NLDKEALREALDAC 93 (94)
T ss_dssp ---EEEEEEEE---S--HHHHHHHHHT-
T ss_pred CCCeEEEEEEC---CCCHHHHHHHHHcc
Confidence 34577899986 77899999999764
No 212
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=30.02 E-value=1.5e+02 Score=18.95 Aligned_cols=55 Identities=7% Similarity=0.041 Sum_probs=37.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcC-C-CeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHH
Q 032280 67 LFVAGLPEDVKPREIYNLFREF-P-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMY 122 (144)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~~-G-~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~ 122 (144)
-|+-..+.+.+..||++.+++. | .|.+|+...-.. +..=|||.+...++|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CceEEEEEECCCCcHHHHHH
Confidence 4555678889999999888864 3 356665544322 22269999988777765543
No 213
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.85 E-value=3.3e+02 Score=22.72 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=22.7
Q ss_pred CcceEEEcCCCCCCCHHHHHH-----------HhhcCCCe-EEEEEeecCC
Q 032280 63 EVRTLFVAGLPEDVKPREIYN-----------LFREFPGY-ESSHLRSSTQ 101 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~-----------~F~~~G~v-~~v~l~~~~~ 101 (144)
..|.|.| ++++--|..||+- |.++||-- ++|.+..+..
T Consensus 63 krrAvLi-GINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~ 112 (362)
T KOG1546|consen 63 KRRAVLI-GINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTD 112 (362)
T ss_pred cceEEEE-eecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCC
Confidence 3456666 5666666666553 44688864 5566655543
No 214
>PHA03075 glutaredoxin-like protein; Provisional
Probab=28.69 E-value=1.2e+02 Score=21.41 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=21.6
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD 113 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~ 113 (144)
-|-++|+.+|.--...+++|..+++ .|||.|..
T Consensus 58 lInn~~~~lgne~v~lfKydp~t~q-mA~V~i~k 90 (123)
T PHA03075 58 LINNFFKHLGNEYVSLFKYDPETKQ-MAFVDISK 90 (123)
T ss_pred hHHHHHHhhcccEEEEEEEcCCCCc-EEEEehhH
Confidence 4677888888544444555655555 89998863
No 215
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=28.64 E-value=77 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCC
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPG 90 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~ 90 (144)
-+.|+|||+.++.+.|.+++...|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 3779999999999999999975544
No 216
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=28.63 E-value=1.1e+02 Score=19.46 Aligned_cols=56 Identities=9% Similarity=-0.028 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCC-eEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 79 REIYNLFREFPG-YESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 79 ~~L~~~F~~~G~-v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
++|++-|.+.|- +..++-..++.++.+ .-||+-....+-.. .|+=+.+ ++..+.||
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~L--g~~~V~VE 60 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTL--GGQRVTVE 60 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhh--CCeeEEEe
Confidence 467788888885 566666555444444 66777765432221 3333333 35555555
No 217
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=28.61 E-value=1.1e+02 Score=21.22 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=29.4
Q ss_pred eEEEEEeecCCCCCcEEEEEeCCHHHHHHHH---HHhcCCcc-CCCCC
Q 032280 91 YESSHLRSSTQNSQPFAFAVFSDQQSALGAM---YALNNFAP-SDSAC 134 (144)
Q Consensus 91 v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~---~~lnG~~~-~~~g~ 134 (144)
|-+|+|.+++.++.+-|...|++...-++-. ....|+.+ |+.|.
T Consensus 12 ip~VrLtRsrdg~~g~a~f~F~~p~al~~~~~~~~~itGm~LiDeEGe 59 (109)
T TIGR03047 12 IPDVRLTRSRDGGTGTALFRFENPKALDKFNSDTGEITGMYLIDEEGE 59 (109)
T ss_pred CCceEEEEccCCCceEEEEEECCchhhhhccccccceeeEEEEccCcc
Confidence 4578888887777778999999887655422 34556555 44443
No 218
>PRK08655 prephenate dehydrogenase; Provisional
Probab=28.40 E-value=2e+02 Score=24.41 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHhhcCCCeEEEEEe--ecC----CCCCcEEE-EEeCCHHHHHHHHHHhcCC
Q 032280 72 LPEDVKPREIYNLFREFPGYESSHLR--SST----QNSQPFAF-AVFSDQQSALGAMYALNNF 127 (144)
Q Consensus 72 Lp~~vte~~L~~~F~~~G~v~~v~l~--~~~----~~~~~~aF-V~F~~~~~A~~A~~~lnG~ 127 (144)
++.+++.++|.++.++..-++++.+. +.. .++++.+| ++|.+.++++...+.|.|.
T Consensus 369 v~~~~~~~~i~~~i~~~~~l~~v~~fDvY~g~~i~~g~kSla~r~~~~~~~~~~~~~~~~~~~ 431 (437)
T PRK08655 369 FPKGADPEVILDLLDNLKHVFDIEIIDVYSGKQIEEGYLSVTFRITVFGKEDLENVEEILEGI 431 (437)
T ss_pred ECCCCCHHHHHHHHhcCCCcceEEEEEEeCCCCCCCCceEEEEEEEEEccccHHHHHHHHhhc
Confidence 46678888888888887667777764 221 22334443 5677777777777666554
No 219
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=28.18 E-value=2.1e+02 Score=25.23 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=35.4
Q ss_pred CCHHHHHHHhh----cCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhc
Q 032280 76 VKPREIYNLFR----EFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 76 vte~~L~~~F~----~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~ln 125 (144)
.+.-+|..+|. .+|-|.++.+....... ...+++.|.|.++|.+|+..+.
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 34457888872 57778888886543322 2378899999999988887754
No 220
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.75 E-value=1.6e+02 Score=25.41 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=39.9
Q ss_pred EEcCCCCCCCH---HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 032280 68 FVAGLPEDVKP---REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSA 133 (144)
Q Consensus 68 fVgnLp~~vte---~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g 133 (144)
+||||..-... ..+.++=++||.|..+++-. .=.|.-.+.+.|..|+. -||..+.++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~-------~~~Vviss~~~akE~l~-~~d~~fa~Rp 96 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS-------VPVVVISSYEAAKEVLV-KQDLEFADRP 96 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC-------ceEEEECCHHHHHHHHH-hCCccccCCC
Confidence 36777764443 45666667999999877721 34788888999999984 4677775443
No 221
>PHA03247 large tegument protein UL36; Provisional
Probab=27.74 E-value=2.8e+02 Score=29.66 Aligned_cols=10 Identities=0% Similarity=-0.007 Sum_probs=5.8
Q ss_pred EcCCCCCCCH
Q 032280 69 VAGLPEDVKP 78 (144)
Q Consensus 69 VgnLp~~vte 78 (144)
+..++.+.++
T Consensus 3001 ~~~~~~w~~~ 3010 (3151)
T PHA03247 3001 LSRVSSWASS 3010 (3151)
T ss_pred CCCcchhhhh
Confidence 3666666554
No 222
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=27.66 E-value=1.9e+02 Score=19.11 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=34.9
Q ss_pred CCCHHHHH----HHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHh-cCCccCCCCCeEEEEee
Q 032280 75 DVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL-NNFAPSDSACSLLFPHS 141 (144)
Q Consensus 75 ~vte~~L~----~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~l-nG~~~~~~g~~l~v~~s 141 (144)
+++-++|+ ++|+ ...-.++.+.+....+ -+|.+.+.++-+.|++.+ .|.. ..+|||.-+
T Consensus 24 d~~~~~L~~kI~~~f~-l~~~~~~~l~Y~Dedg---d~V~l~~D~DL~~a~~~~~~~~~----~~~lrl~v~ 87 (91)
T cd06398 24 DLNMDGLREKVEELFS-LSPDADLSLTYTDEDG---DVVTLVDDNDLTDAIQYFCSGSR----LNPLRIDVT 87 (91)
T ss_pred CCCHHHHHHHHHHHhC-CCCCCcEEEEEECCCC---CEEEEccHHHHHHHHHHHhccCC----CceEEEEEE
Confidence 45555544 4553 2322455665543322 489999999999999885 3332 456666544
No 223
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=27.46 E-value=70 Score=22.19 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=28.9
Q ss_pred eEEEEEeecCCCCCcEEEEEeCCHHHHHH--HHHHhcCCcc-CCCCC
Q 032280 91 YESSHLRSSTQNSQPFAFAVFSDQQSALG--AMYALNNFAP-SDSAC 134 (144)
Q Consensus 91 v~~v~l~~~~~~~~~~aFV~F~~~~~A~~--A~~~lnG~~~-~~~g~ 134 (144)
|-+|+|.+++.++.+-|...|++...-++ -.....|+.+ |+.|.
T Consensus 14 vp~VrLtRsrdg~~g~a~f~F~~p~~l~~~~~~~~itgm~liDeEGe 60 (111)
T PLN00039 14 VPDVRLTRSRDGTNGTAIFVFDQPSVFDSSGELGDITGLYMIDEEGV 60 (111)
T ss_pred CCceEEEEccCCCccEEEEEECCchhhccccccCceeeEEEEccCcc
Confidence 45688888877777789999998876544 2344555554 44443
No 224
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=27.46 E-value=85 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=22.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHL 96 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l 96 (144)
.+.|+|||+.++..-|.+++.....+..+.+
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l 137 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVV 137 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEE
Confidence 5779999999999888888864322344333
No 225
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=26.99 E-value=80 Score=18.91 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=10.6
Q ss_pred CCeEEEEEeecCCCCCcEEEEEeCC
Q 032280 89 PGYESSHLRSSTQNSQPFAFAVFSD 113 (144)
Q Consensus 89 G~v~~v~l~~~~~~~~~~aFV~F~~ 113 (144)
|.|.+++....++ ++.|++++++|
T Consensus 4 g~v~~~~~~~~k~-g~~~~~~~l~D 27 (84)
T cd04485 4 GLVTSVRRRRTKK-GKRMAFVTLED 27 (84)
T ss_pred EEEEEeEEEEcCC-CCEEEEEEEEe
Confidence 3344444433222 22256665555
No 226
>PF14191 YodL: YodL-like
Probab=26.98 E-value=2.1e+02 Score=19.47 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=19.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhc
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFRE 87 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~ 87 (144)
+.+.-+.||.|.|..+.+=++|...|+.
T Consensus 34 ~~~~Y~~VY~~~l~~~~~Le~iy~~FN~ 61 (103)
T PF14191_consen 34 DPENYRLVYDGELDHTETLEDIYERFNV 61 (103)
T ss_pred ChHHceEEEEEecCCCCCHHHHHHHhCc
Confidence 3455678999999966666666666653
No 227
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=26.98 E-value=90 Score=20.70 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=21.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 107 AFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 107 aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.++-|-+-.++..||+.++.+..+..|..|.|
T Consensus 46 ~a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki~I 77 (88)
T PF09162_consen 46 RAQFFVEDASTASALKDVSRKICDEDGFKISI 77 (88)
T ss_dssp EEEEEESSHHHHHHHHTTTTTEEBTTSBEE--
T ss_pred EEEEEeCCHHHHHHHHHCCCceECCCCCEEEE
Confidence 35566666777789999998888655665543
No 228
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=26.81 E-value=71 Score=23.33 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=18.6
Q ss_pred EcCCCCCCCHHH---HHHHhhcCCCeEEEEE
Q 032280 69 VAGLPEDVKPRE---IYNLFREFPGYESSHL 96 (144)
Q Consensus 69 VgnLp~~vte~~---L~~~F~~~G~v~~v~l 96 (144)
|.+|+...+..+ +.++|..||.-.-..+
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH~v~~~ 83 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTHYVTSV 83 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SEEEEEE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcEEEEEE
Confidence 567888888888 7889999998543333
No 229
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=26.69 E-value=1.6e+02 Score=23.60 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcC
Q 032280 75 DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 75 ~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG 126 (144)
.+|++||+++|..+.. .++ ...|.+.+...|+.+++.+.+
T Consensus 128 ~Vtd~ei~~~y~~~~~--~~~----------v~hIlv~~~~~A~~v~~~l~~ 167 (298)
T PRK04405 128 KVTNSQLKKAWKSYQP--KVT----------VQHILVSKKSTAETVIKKLKD 167 (298)
T ss_pred CCCHHHHHHHHHHhhh--hEE----------EEEEEecChHHHHHHHHHHHC
Confidence 5899999999987643 111 456666788888888877653
No 230
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=26.47 E-value=1e+02 Score=19.37 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=17.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcC
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREF 88 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~ 88 (144)
..+-+|||. +++++.|++.|..+
T Consensus 69 ~~~lV~IG~---~l~~~~l~~~l~~~ 91 (92)
T smart00833 69 RTRLVFIGR---DLDEEAIRAALDAC 91 (92)
T ss_pred ceEEEEEeC---CCCHHHHHHHHHHh
Confidence 457788986 68889999988753
No 231
>PHA03048 IMV membrane protein; Provisional
Probab=26.43 E-value=5.5 Score=26.59 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=17.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCC
Q 032280 106 FAFAVFSDQQSALGAMYALNNF 127 (144)
Q Consensus 106 ~aFV~F~~~~~A~~A~~~lnG~ 127 (144)
||||+|+.......++++|.+.
T Consensus 28 fAfidfsK~k~~~~~wRalsii 49 (93)
T PHA03048 28 FAFVDFSKNKATVTVWRALSGI 49 (93)
T ss_pred HhhhhhhcCCCcchhHHHHHHH
Confidence 8999999877767777777654
No 232
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=26.26 E-value=2.2e+02 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=14.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhc
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFRE 87 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~ 87 (144)
+.++|-+-=+-.++-..|..+|+.
T Consensus 306 ~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 306 CATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred cchhhhccCcceecHHHHHHHHHH
Confidence 344553323334677789999963
No 233
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=25.78 E-value=40 Score=23.08 Aligned_cols=21 Identities=5% Similarity=0.262 Sum_probs=16.7
Q ss_pred cCCCCCCCHHHHHHHhhcCCC
Q 032280 70 AGLPEDVKPREIYNLFREFPG 90 (144)
Q Consensus 70 gnLp~~vte~~L~~~F~~~G~ 90 (144)
|.|...++|++|.+++++...
T Consensus 75 G~l~~kI~d~~L~~iL~~i~~ 95 (107)
T PF01984_consen 75 GQLRGKIDDEQLKEILEQISE 95 (107)
T ss_dssp TSSSS-B-HHHHHHHHHHHCC
T ss_pred CCCCCCcCHHHHHHHHHHHhh
Confidence 788999999999999997765
No 234
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=25.75 E-value=1.4e+02 Score=16.91 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=25.6
Q ss_pred HHHHHhhcCCC-eEEEEEeecCCCCCcEEEEEeCCHHHHHHHH
Q 032280 80 EIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAM 121 (144)
Q Consensus 80 ~L~~~F~~~G~-v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~ 121 (144)
++-++|.+.|- |.++.+.... .+....-+++++.+.|.+++
T Consensus 14 ~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 14 EVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 45566666653 6666654433 34447888888877777664
No 235
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=25.59 E-value=1.3e+02 Score=21.02 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=28.5
Q ss_pred eEEEEEeecCCCCCcEEEEEeCCHHHHHHH---HHHhcCCcc-CCCCC
Q 032280 91 YESSHLRSSTQNSQPFAFAVFSDQQSALGA---MYALNNFAP-SDSAC 134 (144)
Q Consensus 91 v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A---~~~lnG~~~-~~~g~ 134 (144)
|-+|+|.+++.++.+-|...|++...-++- .....|+.+ |+.|.
T Consensus 15 ip~VrLtRsrdg~~g~a~f~F~~p~al~~~~~~~~~itgm~LiDeEGe 62 (113)
T CHL00128 15 IPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKQGEITGMYLIDEEGE 62 (113)
T ss_pred CCceEEEEccCCCceEEEEEECCchhhhhccccccceeeEEEEccCcc
Confidence 456888888777777899999988764432 233455544 44443
No 236
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=25.31 E-value=2.2e+02 Score=23.79 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=27.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEeecC-------CCCCcEEEEEeCCHH
Q 032280 66 TLFVAGLPEDVKPREIYNLFREF-PGYESSHLRSST-------QNSQPFAFAVFSDQQ 115 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~-G~v~~v~l~~~~-------~~~~~~aFV~F~~~~ 115 (144)
|+++ .|...++++||+++|.+| ..-.-|++.... -.+..||.|-|...+
T Consensus 248 Ti~~-~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 248 TIYL-KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 4443 455669999999999865 332334443310 112236666665443
No 237
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=25.26 E-value=1.2e+02 Score=21.54 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=19.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcC
Q 032280 66 TLFVAGLPEDVKPREIYNLFREF 88 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~ 88 (144)
.+.|+|+|++++.+.|..+++..
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~~ 101 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEP 101 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhcC
Confidence 46789999999999999888753
No 238
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=24.73 E-value=3.4e+02 Score=22.16 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=17.5
Q ss_pred ceEEEc--CCCCCCCHHHHHHHhhcC
Q 032280 65 RTLFVA--GLPEDVKPREIYNLFREF 88 (144)
Q Consensus 65 ~tLfVg--nLp~~vte~~L~~~F~~~ 88 (144)
.|+|+. -|...++++||+++|++|
T Consensus 211 ~Ti~~~l~~~~~~~~~~~~~~~~~~~ 236 (310)
T TIGR01851 211 VTIPLHLQTLASKVSPADIHAALADY 236 (310)
T ss_pred EEEEEEeccCCCCCCHHHHHHHHHHH
Confidence 466653 247789999999999844
No 239
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=24.66 E-value=99 Score=26.09 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=27.6
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHH
Q 032280 75 DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 121 (144)
Q Consensus 75 ~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~ 121 (144)
+..-.||+.|-+-||. .|....+..+..+|-+|+|++.+.|.+-+
T Consensus 13 ~Fr~pE~eala~lF~~--~i~~sq~~~t~~PF~iv~~~s~~~Ar~~~ 57 (421)
T KOG2671|consen 13 DFRLPELEALASLFGL--QIDESQKLHTTSPFFIVEFESEEIARNLI 57 (421)
T ss_pred ccchHHHHHHHHHHhh--hhhhhhhhcCCCceEEEEeCchHHHHHHH
Confidence 4444556666666653 22222223445569999999999998544
No 240
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=24.44 E-value=2e+02 Score=22.91 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcC
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG 126 (144)
++++.+.+.|.+. +.+ . + +++..|..|++.+.|+++.+.|+.
T Consensus 245 ~~~~~~~~~GAlg-a~m--S-G-SGptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 245 RLKETLLRHGAAA-ALM--S-G-SGSSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred HHHHHHHhcCCCE-EEE--e-c-cCcceEEEeCCHHHHHHHHHHHhh
Confidence 4555566667632 233 1 2 224788889999999988888865
No 241
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=24.31 E-value=1.3e+02 Score=22.63 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHhhcCCCeEEE
Q 032280 74 EDVKPREIYNLFREFPGYESS 94 (144)
Q Consensus 74 ~~vte~~L~~~F~~~G~v~~v 94 (144)
.++|-++|.++|.+|+.-..+
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~ 127 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHC 127 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEE
Confidence 578999999999999974333
No 242
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=24.28 E-value=1.6e+02 Score=25.14 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=34.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEee
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS 98 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~ 98 (144)
...+...+|+.++.-...+++=+++|+..-+++++++++
T Consensus 266 e~~~~~~~~~~G~~t~l~~~~Q~~~~r~ipgle~a~~~r 304 (433)
T TIGR00137 266 EDKAGTLWNMVGFQTNLRWGEQKRVFRLIPGLENAEFVR 304 (433)
T ss_pred cccCCCEEecccccCCCCHHHHHHHHhcCcCccceEEee
Confidence 344567899999999999999999999999999998876
No 243
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=24.25 E-value=1.4e+02 Score=23.81 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=38.6
Q ss_pred CcceEEEcCCCCCC----CHHHHHHHhhcCCC-eEEEEEeecCCCCCcEEEEE-eCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 63 EVRTLFVAGLPEDV----KPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAV-FSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 63 ~~~tLfVgnLp~~v----te~~L~~~F~~~G~-v~~v~l~~~~~~~~~~aFV~-F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
....||||+|-... --.+|-..+.+-+- ++.+.+. ..-.+||--. =.|.++-.++++.+.+..+. ..++
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~---Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fS--t~vV 110 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLR---SSYNGYGTFSLKDDVEDLKCLLEHIQLCGFS--TDVV 110 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecc---ccccccccccccccHHHHHHHHHHhhccCcc--cceE
Confidence 35689999998763 22344444443331 2222221 1111133222 24577777888877777773 3445
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
-+-+|.
T Consensus 111 L~GhST 116 (299)
T KOG4840|consen 111 LVGHST 116 (299)
T ss_pred EEecCc
Confidence 555553
No 244
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.09 E-value=41 Score=29.04 Aligned_cols=60 Identities=3% Similarity=-0.172 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~ln 125 (144)
.+.|+..|+...+++++.-+|..||.|..+.+.+.-.++.. .+||+-.. .++..|++.+-
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k 65 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQK 65 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHH
Confidence 34577889999999999999999999998887654333322 78887654 34455554443
No 245
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=24.01 E-value=1.8e+02 Score=17.86 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCC-eEEEEEeecCCCCCc-EEEEEeCC---HHHHHHHHHHhcC
Q 032280 79 REIYNLFREFPG-YESSHLRSSTQNSQP-FAFAVFSD---QQSALGAMYALNN 126 (144)
Q Consensus 79 ~~L~~~F~~~G~-v~~v~l~~~~~~~~~-~aFV~F~~---~~~A~~A~~~lnG 126 (144)
.++-++|+++|- +.++.....+..... .-||+++. .++..++++.|..
T Consensus 16 ~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 16 YDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 456678888864 666655443332222 56677773 5566677777765
No 246
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=24.01 E-value=1.2e+02 Score=26.29 Aligned_cols=10 Identities=0% Similarity=0.185 Sum_probs=8.6
Q ss_pred EEEEEeCCHH
Q 032280 106 FAFAVFSDQQ 115 (144)
Q Consensus 106 ~aFV~F~~~~ 115 (144)
-|+|.|.+..
T Consensus 125 ~GlIAY~~~~ 134 (465)
T PF01690_consen 125 DGLIAYDNSS 134 (465)
T ss_pred eeeEEecCcc
Confidence 7999999876
No 247
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=23.57 E-value=27 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHhhcCCCeEE
Q 032280 71 GLPEDVKPREIYNLFREFPGYES 93 (144)
Q Consensus 71 nLp~~vte~~L~~~F~~~G~v~~ 93 (144)
.|...+|++||.++....+++.+
T Consensus 5 Dls~~lTeEEl~~~i~~L~~~~~ 27 (61)
T TIGR01639 5 DLSKKLSKEELNELINSLDEIPN 27 (61)
T ss_pred HHhHHccHHHHHHHHHhhcCCCC
Confidence 46677888888888887776543
No 248
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=23.39 E-value=1.1e+02 Score=21.22 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=29.4
Q ss_pred eEEEEEeecCCCCCcEEEEEeCCHHHHHHH-HHHhcCCcc-CCCCC
Q 032280 91 YESSHLRSSTQNSQPFAFAVFSDQQSALGA-MYALNNFAP-SDSAC 134 (144)
Q Consensus 91 v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A-~~~lnG~~~-~~~g~ 134 (144)
|-+|+|.+++.++.+-|...|++...-++. .....|+.+ |+.|.
T Consensus 21 vp~VrLtRsrdG~tG~A~f~F~~p~~l~~~~~~~ItGM~LiDeEGe 66 (113)
T PRK13610 21 QPEIRLFRNLDGKKGKAVYKFYKPKTITLTNYKSVQRMFLIDSEGV 66 (113)
T ss_pred CCceEEEEccCCCccEEEEEECCchhcccccccceeeeEEEccCce
Confidence 356788888777777899999988765442 345556555 54443
No 249
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=23.35 E-value=99 Score=19.92 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=8.5
Q ss_pred CCHHHHHHHhhcC
Q 032280 76 VKPREIYNLFREF 88 (144)
Q Consensus 76 vte~~L~~~F~~~ 88 (144)
+|+++|+++|...
T Consensus 1 vte~el~~yY~~n 13 (121)
T PF13145_consen 1 VTEEELRAYYEEN 13 (121)
T ss_dssp --HHHHHHHHHH-
T ss_pred CCHHHHHHHHHHH
Confidence 5889999999743
No 250
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=23.20 E-value=1.2e+02 Score=25.19 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=8.7
Q ss_pred HHHHHhhcCCCeEEEEEeec
Q 032280 80 EIYNLFREFPGYESSHLRSS 99 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~ 99 (144)
+|+++|+.++.+....++.+
T Consensus 6 dI~~vl~~la~~~g~NiVid 25 (386)
T PRK10560 6 PVAQVLQALAEQEKLNLVVS 25 (386)
T ss_pred CHHHHHHHHHHhcCceEEEC
Confidence 34444444444444444444
No 251
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=23.20 E-value=1.2e+02 Score=23.16 Aligned_cols=39 Identities=5% Similarity=0.037 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHh
Q 032280 79 REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 124 (144)
Q Consensus 79 ~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~l 124 (144)
++|+.+|+.|-..+ ++.++.+.+..+.+.+.|.+.++..
T Consensus 158 ~~I~~fF~~YK~le-------gk~~k~~~~~g~~~~~~A~~vI~~~ 196 (205)
T PRK00642 158 DRLQHYFLTYKATP-------GELIKGVEIVGIYGKEEAQKVIQLA 196 (205)
T ss_pred HHHHHHHHHHcCcc-------cCCCCeEEECCCcCHHHHHHHHHHH
Confidence 56888888886532 1122227777888888888777553
No 252
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.19 E-value=39 Score=28.67 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=43.4
Q ss_pred cceEEEcCCCCCCCHH--------HHHHHhhc--CCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHH
Q 032280 64 VRTLFVAGLPEDVKPR--------EIYNLFRE--FPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAM 121 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~--------~L~~~F~~--~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~ 121 (144)
.|.+|+.+.....+.+ ++...|.. .+....++.+++... .++--|++|.....|+++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4678888888776655 89999998 677777887776422 2235799999999998775
No 253
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=23.19 E-value=69 Score=19.99 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHhhcC
Q 032280 74 EDVKPREIYNLFREF 88 (144)
Q Consensus 74 ~~vte~~L~~~F~~~ 88 (144)
..++|+-|.++|++|
T Consensus 58 ~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 58 EVVTEDILDNIFSNF 72 (73)
T ss_dssp SS--HHHHHHHHCTS
T ss_pred CCChHHHHHHHHHhh
Confidence 357788889999987
No 254
>PF14270 DUF4358: Domain of unknown function (DUF4358)
Probab=23.16 E-value=2e+02 Score=19.04 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=29.6
Q ss_pred CCCHHHHHHHhh-cCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhc
Q 032280 75 DVKPREIYNLFR-EFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 75 ~vte~~L~~~F~-~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~ln 125 (144)
.++.++|+++|. .-..+.++.+......... ++-+...|..+++...+.|+
T Consensus 14 ~~d~~~l~~~ygi~~~~~~~~~~~~s~~~~~~~ei~v~k~kd~~~~e~Vk~~l~ 67 (106)
T PF14270_consen 14 EFDDDMLKKLYGIDSDDYEDYVIYMSMSNMSADEIAVFKAKDGKQAEDVKKALE 67 (106)
T ss_pred cccHHHHHHHhCCCHHHhceEEEEeccccCCccEEEEEEECCcCcHHHHHHHHH
Confidence 356677777764 3334566665544322222 88888877775555555554
No 255
>PHA02898 virion envelope protein; Provisional
Probab=22.84 E-value=10 Score=25.24 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=16.1
Q ss_pred EEEEEeCCHHH-HHHHHHHhcCC
Q 032280 106 FAFAVFSDQQS-ALGAMYALNNF 127 (144)
Q Consensus 106 ~aFV~F~~~~~-A~~A~~~lnG~ 127 (144)
||||+|+.... ++.++++|.+.
T Consensus 28 fAfidfSK~~~~~~~~wRalSii 50 (92)
T PHA02898 28 CAYIELSKSEKPADSALRSISII 50 (92)
T ss_pred HheehhhcCCCcchhHHHHHHHH
Confidence 89999987663 36777776654
No 256
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=22.76 E-value=30 Score=27.68 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=51.1
Q ss_pred CCcceEEEcCCCCCCCHHH-H--HHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 62 DEVRTLFVAGLPEDVKPRE-I--YNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~-L--~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
...-.+|++|+-.++..+- | ...|+.+-.+..-+++++..+. ..++|+.|.+...-.++-..-+++.+
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki 165 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKI 165 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccc
Confidence 3455678888888877665 4 7888888888777776664333 34999999999888888877777776
No 257
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=22.65 E-value=3.5e+02 Score=20.49 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=36.4
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcC-CccCCCCCeEEEEe
Q 032280 77 KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNN-FAPSDSACSLLFPH 140 (144)
Q Consensus 77 te~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG-~~~~~~g~~l~v~~ 140 (144)
+.++.+++.++++.-. +.|+.|.--.+ -+-+...|.++|..|++.+-. ..|.+.+..+-||-
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKadGla~G-KGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE 87 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKADGLAAG-KGVVIADDREEALEALREIFVDRKFGDAGSKVVIEE 87 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEESSSCTT-TSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE
T ss_pred CHHHHHHHHHhcCCCc-eEEccCCCCCC-CEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEe
Confidence 5667777777766533 34444522111 245555999999999877643 45543455666653
No 258
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=22.64 E-value=1.9e+02 Score=17.47 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCC-eEEEEEeecCCCCCc-EEEEEeCC---HHHHHHHHHHhcC
Q 032280 79 REIYNLFREFPG-YESSHLRSSTQNSQP-FAFAVFSD---QQSALGAMYALNN 126 (144)
Q Consensus 79 ~~L~~~F~~~G~-v~~v~l~~~~~~~~~-~aFV~F~~---~~~A~~A~~~lnG 126 (144)
.++-+.|+++|- +.++.-+..++.... .-||+++. ....+.+++.|..
T Consensus 14 ~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 14 AKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 456778888864 666644433332222 67788874 5666677777753
No 259
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=22.41 E-value=2.3e+02 Score=22.17 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=25.6
Q ss_pred EEEcCCCCCC--CHHHHHHHhhcCCCeE----EEEEeecCCCCCcEEEEEeC
Q 032280 67 LFVAGLPEDV--KPREIYNLFREFPGYE----SSHLRSSTQNSQPFAFAVFS 112 (144)
Q Consensus 67 LfVgnLp~~v--te~~L~~~F~~~G~v~----~v~l~~~~~~~~~~aFV~F~ 112 (144)
|.|--|-.+. |-.+|+.+|+++|+-. ++...+++ .|.|+|.
T Consensus 97 iiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-----kG~i~~~ 143 (238)
T TIGR01033 97 IIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-----KGVIEVP 143 (238)
T ss_pred EEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-----ceEEEEC
Confidence 4444444443 5578999999998743 24444433 5788885
No 260
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.22 E-value=1.4e+02 Score=24.46 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHhhcCCCeEE-EEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeecCC
Q 032280 74 EDVKPREIYNLFREFPGYES-SHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSMAM 144 (144)
Q Consensus 74 ~~vte~~L~~~F~~~G~v~~-v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~~~ 144 (144)
..|-++.|+.+++....++- |.+. +.+ .+.++|..-+.++||..- ....|-.+||.||
T Consensus 235 ~~vae~tl~~~~~tvP~~vpgIvfL-SGG----------~s~eeA~~~Lsa~n~~~~--~pw~L~fSf~RAL 293 (332)
T COG3588 235 DEVAEDTLYSLLSTVPAVVPGIVFL-SGG----------YSSEEANAHLSANNGERP--LPWSLIFSFSRAL 293 (332)
T ss_pred HHHHHHHHHHHHhcCCcccceeEEe-cCC----------cchHHHHHHHHhhcCCCC--CCceeeeeHHHHh
Confidence 34557778888888877655 4433 222 346788888888888653 3666777777764
No 261
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.18 E-value=2.5e+02 Score=18.97 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=24.0
Q ss_pred HHHHhhcCCCeEE-----EEEeecCCCCCcEEEEEeCCHHHHHHHH
Q 032280 81 IYNLFREFPGYES-----SHLRSSTQNSQPFAFAVFSDQQSALGAM 121 (144)
Q Consensus 81 L~~~F~~~G~v~~-----v~l~~~~~~~~~~aFV~F~~~~~A~~A~ 121 (144)
...+|++||+--= +..+-..........|+|.|.+.|..+.
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 5568889987311 1111111111227899999999988664
No 262
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=22.16 E-value=1.1e+02 Score=24.47 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=21.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEE
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYES 93 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~ 93 (144)
.+.|+|||++++...|.++++....+..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~ 130 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRC 130 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCce
Confidence 3678999999999998888865333333
No 263
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=21.97 E-value=75 Score=29.42 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=23.9
Q ss_pred CCcceEEEcCCCCCC-CHHHHHHHhhcCCC
Q 032280 62 DEVRTLFVAGLPEDV-KPREIYNLFREFPG 90 (144)
Q Consensus 62 ~~~~tLfVgnLp~~v-te~~L~~~F~~~G~ 90 (144)
-.+||++|.+||.++ ++++|+++|.+.+.
T Consensus 206 ~ssRTvlis~LP~~~~~~e~L~~~~~kl~~ 235 (827)
T COG5594 206 LSSRTVLISGLPSELRSDEELKELFDKLKV 235 (827)
T ss_pred CCCceEEeecCChhhcCchhHHHHHhhcCe
Confidence 467999999999985 66779999997654
No 264
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.94 E-value=1.5e+02 Score=23.93 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=29.5
Q ss_pred CCHHHHHHHh----hcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHH
Q 032280 76 VKPREIYNLF----REFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 121 (144)
Q Consensus 76 vte~~L~~~F----~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~ 121 (144)
.++++++++| ..||.|.- |+.|.+... ..|.+..+.++....+
T Consensus 73 s~~~~~~~~~~~~~~~fg~vDv--LVNNAG~~~-~~~~~~~~~~~~~~~m 119 (282)
T KOG1205|consen 73 SDEESVKKFVEWAIRHFGRVDV--LVNNAGISL-VGFLEDTDIEDVRNVM 119 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCCE--EEecCcccc-ccccccCcHHHHHHHh
Confidence 3456677776 68888753 344666555 7888888888877555
No 265
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=21.88 E-value=98 Score=20.05 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 112 SDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 112 ~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.+.++...+++.+-++++|+.|++|-
T Consensus 50 ~~~e~v~~~L~~~p~tEyD~~GrIVG 75 (77)
T PF12324_consen 50 WPVEEVRAALAAMPDTEYDDQGRIVG 75 (77)
T ss_dssp --HHHHHHHHHH-TTSEEETTSEEEE
T ss_pred CCHHHHHHHHHhCCCceEcCCCCeec
Confidence 45688889999999999987887763
No 266
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=21.85 E-value=1.6e+02 Score=24.79 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=18.7
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 032280 69 VAGLPEDVKPREIYNLFREFPGYESSHL 96 (144)
Q Consensus 69 VgnLp~~vte~~L~~~F~~~G~v~~v~l 96 (144)
|+--..-++|.|++++..+--.|.+.-|
T Consensus 350 ~~p~~~plSeAEFEdiM~RNraiSSSAI 377 (498)
T KOG4849|consen 350 VNPQMFPLSEAEFEDIMTRNRAISSSAI 377 (498)
T ss_pred CCCCCccchHHHHHHHHhhcchhhHHHH
Confidence 3434445789999999887766655443
No 267
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=21.55 E-value=98 Score=21.47 Aligned_cols=18 Identities=11% Similarity=0.456 Sum_probs=15.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhh
Q 032280 66 TLFVAGLPEDVKPREIYNLFR 86 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~ 86 (144)
+|||||.. ++++|.+.|.
T Consensus 3 siWiG~f~---s~~el~~Y~e 20 (122)
T PF14112_consen 3 SIWIGNFK---SEDELEEYFE 20 (122)
T ss_pred EEEEecCC---CHHHHHHHhC
Confidence 69999774 8999999884
No 268
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=21.35 E-value=1e+02 Score=26.95 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=21.1
Q ss_pred ceEE---EcCCCCCCCHHHHHHHhhcCC
Q 032280 65 RTLF---VAGLPEDVKPREIYNLFREFP 89 (144)
Q Consensus 65 ~tLf---VgnLp~~vte~~L~~~F~~~G 89 (144)
|++| |||||..--|..|+++..+|-
T Consensus 276 RRvFyIDvGnlpk~KAeqyl~~iM~k~k 303 (501)
T PF07230_consen 276 RRVFYIDVGNLPKQKAEQYLRDIMNKYK 303 (501)
T ss_pred ceEEEEECCCCChHhHHHHHHHHHHHhc
Confidence 5555 699999999999999998874
No 269
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=21.23 E-value=2.5e+02 Score=22.15 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhcC
Q 032280 105 PFAFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 105 ~~aFV~F~~~~~A~~A~~~lnG 126 (144)
+..|..|.+.+.|+++.+.+..
T Consensus 248 sTvf~l~~~~~~a~~~~~~l~~ 269 (283)
T PRK14610 248 ATCFALFEEEEAAEAAARYLKM 269 (283)
T ss_pred cceeEEeCCHHHHHHHHHHhhh
Confidence 3788888998888888887763
No 270
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.69 E-value=2.5e+02 Score=18.15 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=37.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-----------CCCCc---EEEEEeCCHHHHHHHHHHhc
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-----------QNSQP---FAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~-----------~~~~~---~aFV~F~~~~~A~~A~~~ln 125 (144)
.|.||+... .++.++++.+++|.-.... .++. .-++. ..++.|-++..+..+.+...
T Consensus 2 vliVGG~~~--~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 2 VLIVGGRED--RERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred EEEEcCCcc--cHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHH
Confidence 578888754 4567899999999865554 1111 11111 67888888888887776543
No 271
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=20.66 E-value=2.8e+02 Score=18.71 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=24.0
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHH
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQS 116 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~ 116 (144)
||.+..+..| |.+-.|-++..++.-|++++..+..+
T Consensus 26 Ev~~~L~~~G-i~~ysIfl~~~~~~LF~~~E~~d~~~ 61 (102)
T TIGR02625 26 ELKEVLKSHG-AHNYSIFLDKQRNLLFAYVEIEDEER 61 (102)
T ss_pred HHHHHHHHCC-CeEEEEEEECCCCeEEEEEEECchhc
Confidence 4666777776 46666665655556699999877433
No 272
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=20.64 E-value=87 Score=25.19 Aligned_cols=44 Identities=5% Similarity=0.089 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc--CCcc
Q 032280 74 EDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--NFAP 129 (144)
Q Consensus 74 ~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln--G~~~ 129 (144)
..++++|++.+|..|-. +++ ...|.+.+.+.|+.+++.|+ |..|
T Consensus 128 ~~Vtd~ei~~~y~~~~~--~~~----------~~~I~~~~~~~A~~i~~~l~~~G~dF 173 (310)
T PRK01326 128 KELTDEAYKKAYEEYTP--EVT----------AQIIRLDNEDKAKSVLEEAKAEGADF 173 (310)
T ss_pred CCCCHHHHHHHHHHhCc--ccc----------chhhhHhhhHHHHHHHHHHHhCCCCH
Confidence 36899999999987621 111 23466788899999999985 6665
No 273
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=20.37 E-value=75 Score=21.96 Aligned_cols=41 Identities=10% Similarity=0.036 Sum_probs=21.7
Q ss_pred EEEEeecCCCCCcEEEEEeCCHHHHHHHH---HHhcCCcc-CCCC
Q 032280 93 SSHLRSSTQNSQPFAFAVFSDQQSALGAM---YALNNFAP-SDSA 133 (144)
Q Consensus 93 ~v~l~~~~~~~~~~aFV~F~~~~~A~~A~---~~lnG~~~-~~~g 133 (144)
+|+|.+++.++.+-|...|++...-++-. ..+.|+.+ |+.|
T Consensus 14 dVrLtRsrdg~~g~a~f~F~~p~al~~~~~~~~~itgm~liDeEG 58 (108)
T PF03912_consen 14 DVRLTRSRDGGTGTATFYFENPKALEKFSSDKGEITGMYLIDEEG 58 (108)
T ss_dssp EEEEEE-TTS-SEEEEEEEES-GGGTSS-GG--G---EEEE-SS-
T ss_pred CeEEEEccCCCceEEEEEECCCcccccccccccccceEEEEccCc
Confidence 78998888777778999999876533222 24556655 4434
No 274
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=20.36 E-value=98 Score=17.34 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHhhcC
Q 032280 71 GLPEDVKPREIYNLFREF 88 (144)
Q Consensus 71 nLp~~vte~~L~~~F~~~ 88 (144)
+|+.+++.++|++.|.+.
T Consensus 7 gl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 7 GVPPDASDEEIKKAYRKL 24 (55)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 677889999999988755
No 275
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.23 E-value=2.6e+02 Score=18.17 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCC-eEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 78 PREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 78 e~~L~~~F~~~G~-v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
.+.++++.++.|. ++++-+.+ +.---+..+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~--G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL--GEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec--CCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 4568888888876 55555532 2111178899999999888875554
No 276
>PRK00110 hypothetical protein; Validated
Probab=20.08 E-value=2.3e+02 Score=22.26 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=25.1
Q ss_pred EEEcCCCCCC--CHHHHHHHhhcCCCeE----EEEEeecCCCCCcEEEEEeC
Q 032280 67 LFVAGLPEDV--KPREIYNLFREFPGYE----SSHLRSSTQNSQPFAFAVFS 112 (144)
Q Consensus 67 LfVgnLp~~v--te~~L~~~F~~~G~v~----~v~l~~~~~~~~~~aFV~F~ 112 (144)
|.|--|-.+. |-.+||.+|+++|+-. +|...+++ .|.|+|.
T Consensus 97 iiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-----kG~i~~~ 143 (245)
T PRK00110 97 IIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-----KGVIVIE 143 (245)
T ss_pred EEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-----ceEEEeC
Confidence 3444343332 5578999999998743 34444433 5777776
No 277
>PHA01632 hypothetical protein
Probab=20.06 E-value=1.1e+02 Score=18.72 Aligned_cols=18 Identities=11% Similarity=0.375 Sum_probs=15.2
Q ss_pred EcCCCCCCCHHHHHHHhh
Q 032280 69 VAGLPEDVKPREIYNLFR 86 (144)
Q Consensus 69 VgnLp~~vte~~L~~~F~ 86 (144)
|..+|..-||++|+..+.
T Consensus 21 ieqvp~kpteeelrkvlp 38 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLP 38 (64)
T ss_pred hhhcCCCCCHHHHHHHHH
Confidence 568999999999998664
No 278
>PLN02707 Soluble inorganic pyrophosphatase
Probab=20.01 E-value=91 Score=24.96 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCeEEEEEeecCCCCCcEEEE-EeCCHHHHHHHHHHhc
Q 032280 79 REIYNLFREFPGYESSHLRSSTQNSQPFAFA-VFSDQQSALGAMYALN 125 (144)
Q Consensus 79 ~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV-~F~~~~~A~~A~~~ln 125 (144)
++|+++|+.|...+. +.-..|||. .|.+.+.|.+.++...
T Consensus 208 ~~I~~fF~~YK~~eG-------K~~n~~~~~~~~~~~~~A~~vI~e~~ 248 (267)
T PLN02707 208 TAIRDWFRDYKIPDG-------KPANKFGLDNKPMDKDYALKVIEETN 248 (267)
T ss_pred HHHHHHHHHhcCCCC-------CceeeccccCCcCCHHHHHHHHHHHH
Confidence 678888888854321 111116665 7899999887775543
Done!