Query 032280
Match_columns 144
No_of_seqs 242 out of 1412
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 19:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.9E-23 1E-27 140.0 11.1 80 62-143 17-98 (99)
2 2cqi_A Nucleolysin TIAR; RNA r 99.9 5.6E-22 1.9E-26 133.4 12.2 81 60-142 11-91 (103)
3 4f25_A Polyadenylate-binding p 99.9 1.3E-22 4.4E-27 139.9 9.1 77 64-142 5-81 (115)
4 3s8s_A Histone-lysine N-methyl 99.9 4.3E-22 1.5E-26 136.8 11.4 78 63-142 5-84 (110)
5 2cq3_A RNA-binding protein 9; 99.9 1.2E-21 4.1E-26 131.8 13.1 82 59-142 10-91 (103)
6 2e5h_A Zinc finger CCHC-type a 99.9 1.2E-21 4E-26 129.6 11.7 81 60-142 12-94 (94)
7 2err_A Ataxin-2-binding protei 99.9 5.4E-22 1.9E-26 135.5 9.3 81 60-142 25-105 (109)
8 2d9p_A Polyadenylate-binding p 99.9 1.9E-21 6.4E-26 130.9 11.8 83 58-142 9-91 (103)
9 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.1E-21 3.8E-26 127.3 9.9 79 62-142 5-85 (85)
10 1u6f_A Tcubp1, RNA-binding pro 99.9 5.8E-21 2E-25 134.8 14.3 82 59-142 37-120 (139)
11 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.7E-21 5.9E-26 126.9 10.7 79 62-142 4-84 (87)
12 2cqc_A Arginine/serine-rich sp 99.9 3.3E-21 1.1E-25 127.5 11.9 81 60-142 11-93 (95)
13 2cq0_A Eukaryotic translation 99.9 2.5E-21 8.4E-26 130.3 11.4 83 58-142 9-93 (103)
14 2cph_A RNA binding motif prote 99.9 3.8E-21 1.3E-25 129.9 12.2 82 59-142 10-95 (107)
15 2do4_A Squamous cell carcinoma 99.9 6.1E-21 2.1E-25 127.7 13.0 81 60-142 13-94 (100)
16 2la6_A RNA-binding protein FUS 99.9 5.7E-21 2E-25 127.8 12.2 78 62-141 11-98 (99)
17 2dnz_A Probable RNA-binding pr 99.9 4.6E-21 1.6E-25 126.9 11.6 79 62-142 3-83 (95)
18 2dgo_A Cytotoxic granule-assoc 99.9 5.4E-21 1.8E-25 131.0 12.3 82 59-142 10-93 (115)
19 2khc_A Testis-specific RNP-typ 99.9 3.5E-21 1.2E-25 132.5 11.4 81 60-142 36-118 (118)
20 3r27_A HnRNP L, heterogeneous 99.9 1.6E-21 5.6E-26 132.4 9.5 78 61-142 18-95 (100)
21 2dgv_A HnRNP M, heterogeneous 99.9 2.2E-21 7.7E-26 127.7 9.8 79 62-142 6-84 (92)
22 2dgx_A KIAA0430 protein; RRM d 99.9 2.1E-21 7.1E-26 129.6 9.6 78 62-142 7-88 (96)
23 1whw_A Hypothetical protein ri 99.9 4.3E-21 1.5E-25 128.1 11.1 79 62-142 6-86 (99)
24 3md1_A Nuclear and cytoplasmic 99.9 4.7E-21 1.6E-25 123.8 10.9 76 65-142 2-79 (83)
25 1wex_A Hypothetical protein (r 99.9 5.5E-21 1.9E-25 130.3 11.6 78 61-142 12-89 (104)
26 1x5u_A Splicing factor 3B subu 99.9 6.7E-21 2.3E-25 128.4 11.8 80 61-142 12-93 (105)
27 1p27_B RNA-binding protein 8A; 99.9 7.8E-21 2.7E-25 128.3 11.7 79 62-142 21-101 (106)
28 2cpz_A CUG triplet repeat RNA- 99.9 4E-21 1.4E-25 131.7 10.4 80 61-142 22-103 (115)
29 2dnm_A SRP46 splicing factor; 99.9 3.8E-21 1.3E-25 129.3 10.0 81 60-142 9-91 (103)
30 2dgs_A DAZ-associated protein 99.9 8.1E-21 2.8E-25 126.9 11.5 78 62-142 8-87 (99)
31 1x4d_A Matrin 3; structural ge 99.9 2E-21 6.7E-26 132.3 8.5 76 61-142 12-90 (102)
32 2lkz_A RNA-binding protein 5; 99.9 1.3E-21 4.5E-26 131.4 7.6 80 62-143 7-94 (95)
33 1x5s_A Cold-inducible RNA-bind 99.9 5.8E-21 2E-25 128.1 10.7 80 61-142 9-90 (102)
34 2dnh_A Bruno-like 5, RNA bindi 99.9 1.5E-20 5.1E-25 126.7 12.8 82 61-142 12-95 (105)
35 2cpf_A RNA binding motif prote 99.9 2.4E-21 8.1E-26 129.1 8.7 79 62-142 3-86 (98)
36 2x1f_A MRNA 3'-END-processing 99.9 5.4E-21 1.8E-25 127.2 10.3 77 64-142 2-80 (96)
37 1sjq_A Polypyrimidine tract-bi 99.9 1.8E-21 6.2E-26 133.2 8.2 77 60-142 12-90 (105)
38 1why_A Hypothetical protein ri 99.9 1.4E-20 4.7E-25 125.4 12.3 78 61-142 14-91 (97)
39 2ywk_A Putative RNA-binding pr 99.9 4.5E-21 1.5E-25 127.0 9.8 80 61-142 13-93 (95)
40 1x4a_A Splicing factor, argini 99.9 1E-20 3.5E-25 128.6 11.8 80 60-142 18-97 (109)
41 2jrs_A RNA-binding protein 39; 99.8 1.1E-20 3.7E-25 129.1 11.8 81 60-142 22-104 (108)
42 2ytc_A PRE-mRNA-splicing facto 99.8 6.5E-21 2.2E-25 123.8 10.2 76 61-142 9-85 (85)
43 1x4h_A RNA-binding protein 28; 99.8 1.4E-20 4.7E-25 127.9 12.2 80 61-142 12-99 (111)
44 3p5t_L Cleavage and polyadenyl 99.8 1.4E-21 4.8E-26 128.9 7.0 76 65-142 2-81 (90)
45 2cqd_A RNA-binding region cont 99.8 9.2E-21 3.1E-25 130.1 11.4 82 58-142 11-94 (116)
46 2div_A TRNA selenocysteine ass 99.8 4.4E-21 1.5E-25 128.1 9.5 80 61-142 6-92 (99)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.2E-21 1.4E-25 128.8 9.2 81 61-143 9-91 (102)
48 2lxi_A RNA-binding protein 10; 99.8 6.5E-22 2.2E-26 131.3 5.0 77 64-142 1-81 (91)
49 4a8x_A RNA-binding protein wit 99.8 6.7E-21 2.3E-25 124.2 9.8 79 63-143 3-84 (88)
50 2dgp_A Bruno-like 4, RNA bindi 99.8 7.9E-21 2.7E-25 128.3 10.3 82 61-142 10-94 (106)
51 3n9u_C Cleavage and polyadenyl 99.8 6.4E-21 2.2E-25 138.5 10.5 79 62-142 53-135 (156)
52 3ulh_A THO complex subunit 4; 99.8 1.5E-20 5.3E-25 127.0 11.4 81 60-142 25-106 (107)
53 2cq1_A PTB-like protein L; RRM 99.8 1.7E-20 5.8E-25 127.3 11.6 78 59-142 10-89 (101)
54 2kxn_B Transformer-2 protein h 99.8 8.8E-21 3E-25 133.5 10.5 82 59-142 41-124 (129)
55 2fy1_A RNA-binding motif prote 99.8 1.1E-20 3.8E-25 130.5 10.4 79 62-142 5-84 (116)
56 1x5t_A Splicing factor 3B subu 99.8 6E-21 2E-25 126.6 8.7 79 62-142 3-84 (96)
57 2cpi_A CCR4-NOT transcription 99.8 7.4E-21 2.5E-25 130.1 9.4 80 61-142 12-99 (111)
58 3ns6_A Eukaryotic translation 99.8 4E-21 1.4E-25 129.3 7.8 79 62-142 4-91 (100)
59 1oo0_B CG8781-PA, drosophila Y 99.8 1.3E-20 4.5E-25 128.1 10.5 80 61-142 23-104 (110)
60 2cpj_A Non-POU domain-containi 99.8 1.4E-20 4.8E-25 125.8 10.4 76 61-142 12-87 (99)
61 2do0_A HnRNP M, heterogeneous 99.8 3.1E-20 1.1E-24 126.8 12.3 80 61-142 12-92 (114)
62 2kt5_A RNA and export factor-b 99.8 2.9E-20 1E-24 129.1 12.1 81 60-142 31-112 (124)
63 1p1t_A Cleavage stimulation fa 99.8 4.4E-21 1.5E-25 129.0 7.6 79 62-142 6-86 (104)
64 2dnq_A RNA-binding protein 4B; 99.8 2.6E-20 9E-25 122.5 11.0 73 62-142 6-78 (90)
65 2ad9_A Polypyrimidine tract-bi 99.8 1.4E-20 4.8E-25 131.4 10.2 77 60-142 27-105 (119)
66 2cpe_A RNA-binding protein EWS 99.8 1.8E-20 6.1E-25 128.0 10.5 81 60-142 11-101 (113)
67 2cqp_A RNA-binding protein 12; 99.8 9.7E-21 3.3E-25 126.1 8.8 80 61-142 12-93 (98)
68 2dh8_A DAZ-associated protein 99.8 1.2E-20 4.1E-25 127.3 9.3 81 59-142 11-93 (105)
69 2dng_A Eukaryotic translation 99.8 4.1E-20 1.4E-24 124.4 11.9 78 61-142 12-91 (103)
70 3lqv_A PRE-mRNA branch site pr 99.8 3.1E-20 1E-24 127.2 11.3 78 62-142 6-83 (115)
71 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.1E-20 7.3E-25 131.4 10.8 80 60-141 59-140 (140)
72 1sjr_A Polypyrimidine tract-bi 99.8 2E-20 6.7E-25 137.2 10.8 79 62-142 44-122 (164)
73 1x4e_A RNA binding motif, sing 99.8 3.7E-21 1.3E-25 125.1 5.8 78 62-141 3-82 (85)
74 1s79_A Lupus LA protein; RRM, 99.8 1.6E-20 5.6E-25 127.5 9.2 78 62-142 9-87 (103)
75 3s7r_A Heterogeneous nuclear r 99.8 3.6E-20 1.2E-24 120.8 10.5 78 61-141 8-87 (87)
76 2nlw_A Eukaryotic translation 99.8 1.5E-20 5.2E-25 127.4 9.0 80 62-143 13-99 (105)
77 3ucg_A Polyadenylate-binding p 99.8 2.4E-20 8.3E-25 121.9 9.6 77 63-142 5-83 (89)
78 3ex7_B RNA-binding protein 8A; 99.8 3E-20 1E-24 129.1 10.5 79 62-142 20-100 (126)
79 1x4c_A Splicing factor, argini 99.8 4.9E-20 1.7E-24 125.3 11.3 74 62-142 13-91 (108)
80 2dhg_A TRNA selenocysteine ass 99.8 2.7E-20 9.3E-25 125.2 9.8 79 61-142 6-88 (104)
81 2dgt_A RNA-binding protein 30; 99.8 3.5E-20 1.2E-24 122.4 10.2 74 61-142 7-80 (92)
82 2krb_A Eukaryotic translation 99.8 7.5E-21 2.6E-25 123.0 6.6 72 65-138 2-80 (81)
83 2la4_A Nuclear and cytoplasmic 99.8 1.4E-20 4.8E-25 126.1 8.1 75 62-142 25-99 (101)
84 1wi8_A EIF-4B, eukaryotic tran 99.8 5.2E-20 1.8E-24 124.1 11.0 78 61-142 12-92 (104)
85 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.4E-21 2.2E-25 128.1 6.4 77 62-142 17-96 (100)
86 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.8E-20 2E-24 132.2 11.7 79 62-142 37-117 (156)
87 2cq4_A RNA binding motif prote 99.8 1.5E-20 5.3E-25 128.6 8.1 78 62-142 23-102 (114)
88 2e5j_A Methenyltetrahydrofolat 99.8 6.4E-20 2.2E-24 122.3 11.0 77 61-142 16-92 (97)
89 2jvo_A Nucleolar protein 3; nu 99.8 3.1E-20 1.1E-24 126.8 9.6 74 61-142 28-101 (108)
90 2ek1_A RNA-binding protein 12; 99.8 1.1E-20 3.7E-25 125.1 7.0 79 62-142 13-93 (95)
91 1whx_A Hypothetical protein ri 99.8 3E-20 1E-24 127.4 9.3 74 63-142 9-82 (111)
92 2wbr_A GW182, gawky, LD47780P; 99.8 2.4E-20 8.2E-25 123.8 8.3 72 64-141 7-78 (89)
93 2e44_A Insulin-like growth fac 99.8 3.8E-20 1.3E-24 122.8 9.4 78 61-142 12-90 (96)
94 1x4g_A Nucleolysin TIAR; struc 99.8 3.6E-20 1.2E-24 126.0 9.5 75 62-142 23-97 (109)
95 3zzy_A Polypyrimidine tract-bi 99.8 4.9E-20 1.7E-24 130.5 10.2 78 62-142 26-104 (130)
96 1x4f_A Matrin 3; structural ge 99.8 2.9E-20 1E-24 128.5 8.8 76 61-142 22-100 (112)
97 2dnp_A RNA-binding protein 14; 99.8 4.1E-20 1.4E-24 121.6 8.8 73 62-142 7-79 (90)
98 2a3j_A U1 small nuclear ribonu 99.8 6.2E-20 2.1E-24 129.3 10.0 78 62-142 27-108 (127)
99 2mss_A Protein (musashi1); RNA 99.8 2.2E-20 7.6E-25 118.7 6.9 73 66-141 1-75 (75)
100 2xnq_A Nuclear polyadenylated 99.8 1E-19 3.5E-24 121.9 10.4 73 62-142 20-93 (97)
101 2kvi_A Nuclear polyadenylated 99.8 7E-20 2.4E-24 122.0 9.5 74 61-142 7-81 (96)
102 2m2b_A RNA-binding protein 10; 99.8 1.7E-20 5.7E-25 131.8 6.8 79 61-142 20-106 (131)
103 1x5o_A RNA binding motif, sing 99.8 2.8E-19 9.6E-24 122.2 12.5 82 61-142 22-110 (114)
104 2jwn_A Embryonic polyadenylate 99.8 6.1E-20 2.1E-24 127.2 9.3 77 63-142 35-113 (124)
105 2e5i_A Heterogeneous nuclear r 99.8 2.4E-19 8.2E-24 126.0 12.4 75 64-142 25-100 (124)
106 2ki2_A SS-DNA binding protein 99.8 8.1E-21 2.8E-25 124.7 4.4 75 65-142 2-78 (90)
107 2hvz_A Splicing factor, argini 99.8 3.8E-20 1.3E-24 124.0 7.6 73 65-142 1-73 (101)
108 2jvr_A Nucleolar protein 3; RN 99.8 4.5E-20 1.5E-24 127.3 8.1 76 63-142 27-103 (111)
109 2cpd_A Apobec-1 stimulating pr 99.8 3.2E-19 1.1E-23 119.2 11.7 75 60-142 11-87 (99)
110 2kn4_A Immunoglobulin G-bindin 99.8 1.6E-19 5.5E-24 129.8 10.8 79 62-142 68-148 (158)
111 2e5g_A U6 snRNA-specific termi 99.8 7.6E-20 2.6E-24 121.3 8.5 75 62-142 6-80 (94)
112 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.4E-20 1.2E-24 118.1 6.4 75 65-142 1-77 (77)
113 2i2y_A Fusion protein consists 99.8 1.4E-19 4.9E-24 129.4 10.2 77 61-142 70-146 (150)
114 4f02_A Polyadenylate-binding p 99.8 1.5E-19 5E-24 136.0 10.7 79 62-142 13-93 (213)
115 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-19 4E-24 124.0 9.3 79 61-142 22-102 (109)
116 2dgu_A Heterogeneous nuclear r 99.8 1.2E-19 4E-24 122.3 9.2 73 62-142 9-81 (103)
117 2cqg_A TDP-43, TAR DNA-binding 99.8 4.4E-19 1.5E-23 119.2 12.0 79 60-142 11-91 (103)
118 1x5p_A Negative elongation fac 99.8 3.8E-19 1.3E-23 118.5 11.6 74 61-142 12-85 (97)
119 1nu4_A U1A RNA binding domain; 99.8 4.9E-20 1.7E-24 122.3 7.0 78 62-142 6-87 (97)
120 2lea_A Serine/arginine-rich sp 99.8 3.7E-20 1.3E-24 131.1 6.8 81 60-142 43-125 (135)
121 2db1_A Heterogeneous nuclear r 99.8 1.3E-19 4.3E-24 125.5 9.3 80 60-142 13-96 (118)
122 2dgw_A Probable RNA-binding pr 99.8 2.9E-19 1E-23 117.5 10.4 77 62-142 8-85 (91)
123 2dis_A Unnamed protein product 99.8 1.4E-19 4.6E-24 122.7 9.0 79 62-142 6-90 (109)
124 2fc8_A NCL protein; structure 99.8 3.4E-19 1.2E-23 119.4 10.8 79 59-142 10-90 (102)
125 1wf1_A RNA-binding protein RAL 99.8 1.4E-19 4.8E-24 123.2 8.9 73 62-142 25-98 (110)
126 2fc9_A NCL protein; structure 99.8 3.3E-19 1.1E-23 119.4 10.4 78 60-142 11-89 (101)
127 2cq2_A Hypothetical protein LO 99.8 1.1E-19 3.9E-24 125.9 8.0 79 61-143 22-105 (114)
128 3q2s_C Cleavage and polyadenyl 99.8 1.3E-19 4.3E-24 138.9 9.1 78 63-142 67-148 (229)
129 2cpy_A RNA-binding protein 12; 99.8 1.6E-19 5.4E-24 124.0 8.7 79 61-142 12-92 (114)
130 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.8E-19 1.3E-23 129.4 11.1 79 62-142 70-150 (165)
131 1x4b_A Heterogeneous nuclear r 99.8 1.7E-19 5.8E-24 123.7 8.7 78 62-142 25-104 (116)
132 2cqh_A IGF-II mRNA-binding pro 99.8 1E-19 3.4E-24 120.2 7.0 74 62-142 6-81 (93)
133 2cpx_A Hypothetical protein FL 99.8 2.8E-19 9.7E-24 122.2 9.3 77 62-142 23-103 (115)
134 1wg5_A Heterogeneous nuclear r 99.8 7.3E-19 2.5E-23 118.8 10.8 79 61-142 12-92 (104)
135 1fjc_A Nucleolin RBD2, protein 99.8 1.8E-19 6E-24 119.6 7.4 77 61-142 13-89 (96)
136 1wel_A RNA-binding protein 12; 99.8 1.3E-19 4.5E-24 126.0 7.0 79 61-142 22-102 (124)
137 2hgl_A HNRPF protein, heteroge 99.8 2.5E-19 8.4E-24 127.6 8.1 80 60-142 40-123 (136)
138 1wez_A HnRNP H', FTP-3, hetero 99.8 6E-19 2.1E-23 119.3 9.6 77 61-142 12-90 (102)
139 2f3j_A RNA and export factor b 99.8 7.9E-19 2.7E-23 129.7 11.1 81 60-142 84-165 (177)
140 4f02_A Polyadenylate-binding p 99.8 3.5E-19 1.2E-23 133.9 9.3 78 63-142 102-179 (213)
141 3beg_B Splicing factor, argini 99.8 2.7E-19 9.4E-24 123.2 7.9 73 62-141 14-91 (115)
142 1wg1_A KIAA1579 protein, homol 99.8 3.5E-19 1.2E-23 116.8 7.9 74 62-142 3-76 (88)
143 1fj7_A Nucleolin RBD1, protein 99.8 6.8E-20 2.3E-24 122.8 4.1 77 62-142 15-93 (101)
144 3pgw_A U1-A; protein-RNA compl 99.8 6E-18 2E-22 131.2 15.5 79 60-142 203-281 (282)
145 2hzc_A Splicing factor U2AF 65 99.8 5.3E-19 1.8E-23 115.0 8.0 72 62-140 4-86 (87)
146 3d2w_A TAR DNA-binding protein 99.8 8.2E-19 2.8E-23 115.9 8.8 74 62-142 9-82 (89)
147 3tyt_A Heterogeneous nuclear r 99.8 8.7E-19 3E-23 132.0 9.9 75 63-142 3-78 (205)
148 1iqt_A AUF1, heterogeneous nuc 99.8 1.6E-19 5.6E-24 114.5 4.8 73 66-141 1-75 (75)
149 2dnn_A RNA-binding protein 12; 99.8 1.3E-18 4.5E-23 119.4 9.4 76 62-141 14-90 (109)
150 1fxl_A Paraneoplastic encephal 99.8 2.6E-18 9E-23 122.4 11.1 77 64-142 2-80 (167)
151 2lmi_A GRSF-1, G-rich sequence 99.8 3.3E-19 1.1E-23 121.2 6.0 79 61-142 8-90 (107)
152 1b7f_A Protein (SXL-lethal pro 99.8 5.4E-18 1.9E-22 121.3 12.6 80 62-141 87-168 (168)
153 3md3_A Nuclear and cytoplasmic 99.8 5E-18 1.7E-22 120.8 12.2 80 61-142 84-165 (166)
154 2xs2_A Deleted in azoospermia- 99.8 5.3E-19 1.8E-23 118.6 6.7 76 62-142 7-84 (102)
155 2lcw_A RNA-binding protein FUS 99.6 2.7E-20 9.1E-25 127.9 0.0 79 62-142 5-93 (116)
156 3egn_A RNA-binding protein 40; 99.8 5.8E-19 2E-23 125.3 6.7 78 62-142 43-128 (143)
157 2qfj_A FBP-interacting repress 99.8 4.7E-18 1.6E-22 126.3 11.8 80 62-143 123-204 (216)
158 1b7f_A Protein (SXL-lethal pro 99.8 2.3E-18 7.7E-23 123.3 9.6 77 64-142 3-81 (168)
159 3md3_A Nuclear and cytoplasmic 99.8 1.9E-18 6.4E-23 123.1 8.9 76 65-142 1-77 (166)
160 2bz2_A Negative elongation fac 99.8 3E-18 1E-22 119.3 9.4 73 62-142 37-109 (121)
161 3nmr_A Cugbp ELAV-like family 99.8 5.2E-18 1.8E-22 121.9 10.9 80 63-142 2-86 (175)
162 1fxl_A Paraneoplastic encephal 99.8 8.1E-18 2.8E-22 119.9 11.7 80 62-141 86-167 (167)
163 2g4b_A Splicing factor U2AF 65 99.8 5.7E-18 1.9E-22 121.8 10.8 78 62-141 92-171 (172)
164 3pgw_S U1-70K; protein-RNA com 99.8 4.4E-18 1.5E-22 141.3 11.5 80 61-142 99-180 (437)
165 2diu_A KIAA0430 protein; struc 99.8 4.9E-18 1.7E-22 113.8 9.3 70 63-142 7-82 (96)
166 3nmr_A Cugbp ELAV-like family 99.8 6.7E-18 2.3E-22 121.3 10.7 79 63-141 94-174 (175)
167 2yh0_A Splicing factor U2AF 65 99.7 1.5E-17 5E-22 122.1 11.4 79 62-142 112-192 (198)
168 2qfj_A FBP-interacting repress 99.7 9.2E-18 3.1E-22 124.7 10.1 78 63-142 27-106 (216)
169 3pgw_A U1-A; protein-RNA compl 99.7 1.5E-17 5E-22 129.0 11.6 79 61-142 6-88 (282)
170 1l3k_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 122.3 10.4 78 62-142 11-90 (196)
171 1wf0_A TDP-43, TAR DNA-binding 99.7 3.7E-18 1.3E-22 111.7 6.8 74 62-142 3-76 (88)
172 2hgn_A Heterogeneous nuclear r 99.7 1.2E-18 4E-23 124.6 4.7 78 61-142 43-121 (139)
173 2dnl_A Cytoplasmic polyadenyla 99.7 6.7E-18 2.3E-22 115.8 8.0 67 62-129 6-80 (114)
174 2hgm_A HNRPF protein, heteroge 99.7 6.2E-18 2.1E-22 119.0 7.8 76 62-141 40-118 (126)
175 3u1l_A PRE-mRNA-splicing facto 99.7 7.6E-18 2.6E-22 130.2 8.8 78 61-142 131-227 (240)
176 2adc_A Polypyrimidine tract-bi 99.7 1E-17 3.4E-22 127.2 9.1 76 62-142 32-108 (229)
177 2dha_A FLJ20171 protein; RRM d 99.7 1E-17 3.5E-22 117.4 6.8 77 62-141 21-102 (123)
178 2cjk_A Nuclear polyadenylated 99.7 1.5E-17 5.2E-22 119.0 7.7 76 64-142 87-164 (167)
179 1l3k_A Heterogeneous nuclear r 99.7 6.1E-17 2.1E-21 118.6 10.6 78 62-142 102-181 (196)
180 1qm9_A Polypyrimidine tract-bi 99.7 1.4E-17 5E-22 122.8 7.2 74 64-142 3-77 (198)
181 2pe8_A Splicing factor 45; RRM 99.7 1.1E-16 3.7E-21 109.1 10.4 79 62-142 6-92 (105)
182 1fje_B Nucleolin RBD12, protei 99.7 6.7E-17 2.3E-21 116.7 9.7 76 62-142 97-172 (175)
183 3tyt_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 123.4 7.6 71 63-133 122-194 (205)
184 2j8a_A Histone-lysine N-methyl 99.7 4.2E-17 1.4E-21 115.2 7.4 75 65-141 3-93 (136)
185 2ghp_A U4/U6 snRNA-associated 99.7 7E-17 2.4E-21 125.7 8.9 78 61-141 38-115 (292)
186 2cjk_A Nuclear polyadenylated 99.7 6.3E-17 2.2E-21 115.7 7.9 76 63-142 2-79 (167)
187 3sde_A Paraspeckle component 1 99.7 1.2E-16 4.1E-21 123.5 9.9 75 62-142 20-94 (261)
188 2voo_A Lupus LA protein; RNA-b 99.7 1.8E-16 6E-21 118.5 9.7 76 64-142 109-185 (193)
189 1qm9_A Polypyrimidine tract-bi 99.7 3.5E-16 1.2E-20 115.3 10.2 77 62-142 118-195 (198)
190 2g4b_A Splicing factor U2AF 65 99.7 3E-16 1E-20 112.6 8.5 73 63-142 3-86 (172)
191 2adc_A Polypyrimidine tract-bi 99.7 5.5E-16 1.9E-20 117.6 10.2 76 63-142 150-226 (229)
192 2dit_A HIV TAT specific factor 99.7 1.2E-15 4E-20 104.3 10.7 77 62-142 13-100 (112)
193 3tht_A Alkylated DNA repair pr 99.6 5.6E-16 1.9E-20 125.3 10.4 78 60-141 14-96 (345)
194 3smz_A Protein raver-1, ribonu 99.6 1E-15 3.5E-20 118.7 11.2 78 63-142 94-173 (284)
195 1fje_B Nucleolin RBD12, protei 99.6 6.4E-17 2.2E-21 116.8 4.0 80 60-142 9-89 (175)
196 3smz_A Protein raver-1, ribonu 99.6 5.9E-16 2E-20 120.0 9.7 79 62-142 182-262 (284)
197 2ghp_A U4/U6 snRNA-associated 99.6 4E-16 1.4E-20 121.4 8.3 78 62-142 208-289 (292)
198 2yh0_A Splicing factor U2AF 65 99.6 4.2E-16 1.4E-20 114.2 7.7 73 63-142 3-86 (198)
199 3v4m_A Splicing factor U2AF 65 99.6 1.8E-15 6.1E-20 103.0 8.6 77 63-141 4-94 (105)
200 3sde_A Paraspeckle component 1 99.6 3.2E-15 1.1E-19 115.4 10.0 80 63-142 95-177 (261)
201 1jmt_A Splicing factor U2AF 35 99.6 4.1E-16 1.4E-20 105.9 3.5 71 69-141 20-103 (104)
202 3ue2_A Poly(U)-binding-splicin 99.6 7.8E-15 2.7E-19 101.9 8.2 77 63-141 19-106 (118)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.3E-13 4.5E-18 93.1 10.2 72 64-142 10-88 (100)
204 3s6e_A RNA-binding protein 39; 99.5 1.8E-13 6.3E-18 94.4 9.5 74 64-141 7-90 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 3.4E-12 1.2E-16 89.1 10.6 73 62-140 16-92 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 6.9E-12 2.4E-16 83.2 6.8 68 65-141 8-83 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 1.3E-11 4.6E-16 82.3 3.4 68 64-140 15-91 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 2.5E-10 8.6E-15 85.8 8.6 64 76-141 141-210 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 1.1E-08 3.8E-13 69.8 8.1 72 62-139 19-95 (117)
210 1uw4_A UPF3X; nonsense mediate 98.4 4.7E-06 1.6E-10 55.1 10.3 77 65-141 2-85 (91)
211 1wey_A Calcipressin 1; structu 98.2 2.5E-06 8.4E-11 57.6 6.1 73 64-142 5-82 (104)
212 1whv_A Poly(A)-specific ribonu 97.9 0.0001 3.5E-09 49.1 8.3 55 64-125 16-70 (100)
213 2l08_A Regulator of nonsense t 97.7 9.1E-05 3.1E-09 49.3 6.5 73 64-136 9-86 (97)
214 2dhx_A Poly (ADP-ribose) polym 97.7 0.00033 1.1E-08 47.1 8.3 56 62-123 6-66 (104)
215 1wwh_A Nucleoporin 35, nucleop 97.6 0.00049 1.7E-08 47.4 8.3 62 63-130 23-84 (119)
216 3ctr_A Poly(A)-specific ribonu 97.5 0.00019 6.5E-09 47.9 5.5 54 65-125 7-60 (101)
217 3pq1_A Poly(A) RNA polymerase; 97.3 0.00011 3.7E-09 61.4 2.9 54 64-121 53-106 (464)
218 2kn4_A Immunoglobulin G-bindin 97.0 0.00049 1.7E-08 48.3 3.5 35 93-127 2-36 (158)
219 2i2y_A Fusion protein consists 96.6 0.0012 4.2E-08 46.0 3.2 45 94-141 3-48 (150)
220 3p3d_A Nucleoporin 53; structu 95.9 0.0067 2.3E-07 42.4 3.4 70 65-138 8-93 (132)
221 3d45_A Poly(A)-specific ribonu 95.0 0.09 3.1E-06 44.1 8.2 55 64-125 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 83.9 0.64 2.2E-05 28.4 2.3 67 66-141 2-74 (76)
223 4f25_A Polyadenylate-binding p 79.2 0.39 1.3E-05 31.6 0.0 19 62-80 95-113 (115)
224 3fry_A Probable copper-exporti 68.9 12 0.0004 21.7 5.0 56 64-124 6-61 (73)
225 4a4j_A Pacszia, cation-transpo 64.4 15 0.00052 20.6 4.8 54 65-122 4-60 (69)
226 2ki0_A DS119; beta-alpha-beta, 58.4 4.7 0.00016 20.8 1.4 19 62-85 3-21 (36)
227 2gu3_A YPMB protein; APC1927, 57.5 16 0.00055 25.0 4.5 45 69-113 68-127 (136)
228 4e8u_A Putative uncharacterize 56.0 22 0.00074 25.6 5.1 38 76-114 33-72 (172)
229 2ofg_X Zinc-transporting ATPas 55.0 37 0.0013 21.4 7.1 59 65-128 10-72 (111)
230 2lfv_A Protein DAMX; cell divi 59.1 2.7 9.2E-05 27.8 0.0 59 64-126 25-86 (106)
231 3dxs_X Copper-transporting ATP 53.0 29 0.001 19.6 6.4 56 65-124 4-63 (74)
232 1x8d_A Hypothetical protein YI 49.7 37 0.0013 22.0 5.1 33 80-113 28-60 (104)
233 1ik9_C DNA ligase IV; DNA END 49.0 13 0.00044 19.7 2.3 17 73-89 19-35 (37)
234 4bby_A Alkyldihydroxyacetoneph 47.4 19 0.00065 30.8 4.3 56 70-125 349-409 (658)
235 2xmw_A PACS-N, cation-transpor 46.8 34 0.0012 18.6 5.4 56 65-124 5-63 (71)
236 3rw6_A Nuclear RNA export fact 46.7 13 0.00045 28.2 2.9 65 66-136 26-92 (267)
237 2g9o_A Copper-transporting ATP 44.5 45 0.0015 19.9 4.8 56 65-124 5-64 (90)
238 4ar0_A Type IV pilus biogenesi 42.8 8.4 0.00029 26.1 1.1 64 76-139 38-102 (128)
239 3fut_A Dimethyladenosine trans 42.0 26 0.00088 26.5 3.9 33 65-98 111-143 (271)
240 1yg0_A COP associated protein; 40.7 42 0.0014 17.9 6.3 55 66-124 4-61 (66)
241 2okq_A Hypothetical protein YB 40.0 91 0.0031 21.6 6.8 42 81-122 50-108 (141)
242 1wvf_A 4-cresol dehydrogenase 38.7 20 0.0007 29.5 3.0 42 80-121 217-261 (520)
243 2l3m_A Copper-ION-binding prot 37.4 51 0.0017 17.9 6.6 56 65-124 7-66 (71)
244 2kt2_A Mercuric reductase; nme 37.3 51 0.0017 17.9 5.0 54 66-123 3-59 (69)
245 3pm9_A Putative oxidoreductase 36.6 33 0.0011 28.1 4.0 54 72-125 194-252 (476)
246 2uuu_A Alkyldihydroxyacetoneph 36.3 24 0.00083 29.8 3.2 54 72-125 281-339 (584)
247 2ew9_A Copper-transporting ATP 35.8 85 0.0029 20.0 5.4 58 65-127 82-143 (149)
248 3ts2_A Protein LIN-28 homolog 35.3 6.5 0.00022 27.4 -0.4 29 78-112 1-29 (148)
249 1fme_A FSD-EY peptide; beta-BE 35.1 25 0.00084 17.1 1.8 15 76-90 13-27 (28)
250 3uzu_A Ribosomal RNA small sub 33.8 14 0.00048 28.1 1.2 34 65-98 115-148 (279)
251 1q8l_A Copper-transporting ATP 33.0 73 0.0025 18.4 7.8 59 64-127 10-72 (84)
252 1aw0_A Menkes copper-transport 32.8 62 0.0021 17.5 4.8 56 65-124 5-64 (72)
253 3d53_A Inorganic pyrophosphata 32.6 60 0.0021 23.2 4.3 36 79-123 133-168 (173)
254 1cpz_A Protein (COPZ); copper 32.6 60 0.0021 17.3 7.7 44 66-113 3-46 (68)
255 1i4w_A Mitochondrial replicati 32.1 24 0.00084 27.9 2.4 23 65-87 143-165 (353)
256 2e7g_A Putative ribosome-bindi 31.1 1.2E+02 0.004 20.2 6.0 36 88-125 43-79 (129)
257 1p6t_A Potential copper-transp 30.4 1.1E+02 0.0037 19.6 6.8 57 66-127 77-137 (151)
258 1eij_A Hypothetical protein MT 29.9 32 0.0011 21.5 2.2 20 70-89 50-69 (80)
259 1osd_A MERP, hypothetical prot 29.6 71 0.0024 17.2 7.3 56 65-124 5-64 (72)
260 3pgw_S U1-70K; protein-RNA com 29.3 5.1 0.00017 32.6 -2.1 15 80-94 8-22 (437)
261 1ytr_A Bacteriocin plantaricin 29.2 31 0.0011 16.4 1.5 12 78-89 14-25 (26)
262 1qyr_A KSGA, high level kasuga 29.1 43 0.0015 24.9 3.2 31 66-96 92-122 (252)
263 3tqs_A Ribosomal RNA small sub 28.6 15 0.00053 27.4 0.6 32 67-98 99-130 (255)
264 1y3j_A Copper-transporting ATP 28.5 81 0.0028 17.5 4.9 58 65-127 5-66 (77)
265 2y3m_A Emhofq, protein transpo 28.1 40 0.0014 23.3 2.8 63 77-139 13-76 (175)
266 1qez_A Ppase, S-ppase, protein 27.9 80 0.0027 22.5 4.3 37 79-124 129-165 (173)
267 1kvi_A Copper-transporting ATP 27.5 86 0.0029 17.5 7.1 57 64-124 9-69 (79)
268 1yjr_A Copper-transporting ATP 26.6 84 0.0029 17.1 8.0 46 64-113 5-50 (75)
269 3pyf_A 4-diphosphocytidyl-2-C- 26.2 1.9E+02 0.0065 21.8 6.5 43 79-126 238-280 (306)
270 3ftd_A Dimethyladenosine trans 25.9 39 0.0013 25.0 2.4 30 65-94 96-125 (249)
271 2pg9_A Phosphomevalonate kinas 25.5 1.5E+02 0.0051 22.6 5.9 43 81-127 279-321 (337)
272 2e5p_A Protein PHF1, PHD finge 25.5 36 0.0012 20.6 1.7 9 106-114 39-47 (68)
273 2fh0_A Hypothetical 16.0 kDa p 25.5 39 0.0013 21.2 2.0 20 70-89 48-67 (81)
274 3k17_A LIN0012 protein; protei 25.1 2E+02 0.0069 22.3 6.6 42 80-125 299-340 (365)
275 3pc6_A DNA repair protein XRCC 24.9 63 0.0022 20.9 3.0 30 63-92 9-38 (104)
276 3rfw_A Cell-binding factor 2; 24.6 1.5E+02 0.0052 21.4 5.6 45 75-125 90-134 (252)
277 3swz_A Steroid 17-alpha-hydrox 24.4 1E+02 0.0035 24.2 4.8 49 67-122 17-69 (494)
278 2ww4_A 4-diphosphocytidyl-2C-m 24.3 1.5E+02 0.0051 22.0 5.6 40 80-126 224-263 (283)
279 1fvq_A Copper-transporting ATP 24.3 92 0.0031 16.7 5.3 55 66-124 5-62 (72)
280 2knz_A Ubiquilin-4; cytoplasm, 23.1 52 0.0018 18.4 2.1 16 111-126 23-38 (53)
281 2kyz_A Heavy metal binding pro 23.1 73 0.0025 17.3 2.8 52 66-122 4-55 (67)
282 3cjk_B Copper-transporting ATP 23.0 1E+02 0.0035 16.8 6.6 55 66-124 5-63 (75)
283 2bwb_A Ubiquitin-like protein 22.8 56 0.0019 17.8 2.1 17 111-127 19-35 (46)
284 2prd_A Pyrophosphate phosphohy 22.5 80 0.0027 22.5 3.4 38 79-123 130-167 (174)
285 1mwy_A ZNTA; open-faced beta-s 22.4 1.1E+02 0.0036 16.8 8.0 56 65-124 5-62 (73)
286 1e8g_A Vanillyl-alcohol oxidas 21.4 40 0.0014 28.2 1.9 42 81-122 250-294 (560)
287 3fle_A SE_1780 protein; struct 20.9 2.5E+02 0.0084 20.4 8.3 77 64-143 7-107 (249)
288 2jy5_A Ubiquilin-1; UBA, alter 20.2 66 0.0023 17.9 2.1 16 111-126 24-39 (52)
289 2qlw_A RHAU; mutarotase, isome 20.1 30 0.001 24.1 0.7 48 65-113 43-100 (144)
290 1opz_A Potential copper-transp 20.1 1.2E+02 0.004 16.4 8.4 59 65-128 8-70 (76)
291 1wr1_B Ubiquitin-like protein 20.1 65 0.0022 18.6 2.1 17 111-127 29-45 (58)
292 1f0x_A DLDH, D-lactate dehydro 20.0 42 0.0014 28.4 1.7 45 80-125 246-297 (571)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=140.02 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=72.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+.++|||+|||.++||++|+++|++||.|.+|++.+++.+++ +||||+|.+.++|++|++.|||..|+ |+.|+|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ--SKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEE
Confidence 3567899999999999999999999999999999998865544 39999999999999999999999995 8999999
Q ss_pred eecC
Q 032280 140 HSMA 143 (144)
Q Consensus 140 ~s~~ 143 (144)
|+..
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9863
No 2
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.6e-22 Score=133.44 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=74.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.....++|||+||+.++++++|+++|++||.|++|++..++.++++||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL--GKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC--CCeEEEE
Confidence 44567899999999999999999999999999999999887666679999999999999999999999995 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 89 ~a~ 91 (103)
T 2cqi_A 89 WAT 91 (103)
T ss_dssp ECC
T ss_pred ECC
Confidence 975
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.3e-22 Score=139.86 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=71.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
..+||||||+.+++|++|+++|++||.|++|+|+++++++++||||+|++.++|++|++.|||..|+ |+.|+|+|..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~--g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN--DRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEECC
Confidence 4689999999999999999999999999999999987666679999999999999999999999994 8899999864
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=4.3e-22 Score=136.82 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=71.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
..++|||+||+++++|++|+++|++||.|++|+|.++..+++ +||||+|++.++|++|++.|||..|+ |+.|+|++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~--gr~i~V~~ 82 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM--GNIIHAQL 82 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 458999999999999999999999999999999999876544 49999999999999999999999995 89999998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 83 a~ 84 (110)
T 3s8s_A 83 DI 84 (110)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 5
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=131.83 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=74.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 59 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
......++|||+||+.++++++|+++|++||.|++|++..++.+.++||||+|++.++|++|++.|||..|. |+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE--GRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEE
Confidence 344567899999999999999999999999999999999886666669999999999999999999999994 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 88 ~~a~ 91 (103)
T 2cq3_A 88 NNAT 91 (103)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9975
No 6
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=129.57 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=72.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.....++|||+||+.++++++|+++|++||.|++|++..++.++ ++||||+|++.++|++|++.|||..|. |+.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF--GRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET--TEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC--CcEEE
Confidence 34567899999999999999999999999999999998875433 449999999999999999999999995 89999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 7
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.4e-22 Score=135.53 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=74.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.....++|||+||+.++++++|+++|++||.|++|++..++++.++||||+|++.++|++|++.|||..|. |+.|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE--GRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEE
Confidence 34567899999999999999999999999999999999886666679999999999999999999999994 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 103 ~a~ 105 (109)
T 2err_A 103 NAT 105 (109)
T ss_dssp ECC
T ss_pred ECC
Confidence 975
No 8
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=130.87 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=73.3
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 58 YGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 58 ~~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.....+.++|||+||+.++++++|+++|++||.|++|++..+.+..++||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA--TKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS--SSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC--CcEEE
Confidence 3344578899999999999999999999999999999999873333449999999999999999999999994 88999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 87 V~~a~ 91 (103)
T 2d9p_A 87 VALAQ 91 (103)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99975
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=1.1e-21 Score=127.27 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.+|++..+..++ ++||||+|++.++|++|++.|||..++ |+.|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEE
Confidence 457899999999999999999999999999999998874443 349999999999999999999999994 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 974
No 10
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=5.8e-21 Score=134.82 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=73.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 59 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
......++|||+||+.++++++|+++|++||.|++|+++.++.++ ++||||+|++.++|++|++.|||..|. |+.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 114 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL--NKRL 114 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS--SCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeEE
Confidence 344667899999999999999999999999999999999886544 349999999999999999999999995 8899
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 115 ~v~~a~ 120 (139)
T 1u6f_A 115 KVALAA 120 (139)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999975
No 11
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=126.89 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.+|++..++.++. +||||+|.+.++|++|++.|||..++ |+.|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 4568999999999999999999999999999999998754443 49999999999999999999999995 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 82 ~a~ 84 (87)
T 3bs9_A 82 WAT 84 (87)
T ss_dssp EEC
T ss_pred ecC
Confidence 985
No 12
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.3e-21 Score=127.48 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=73.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.....++|||+||+.++++++|+++|++||.|++|++..++.++. +||||+|++.++|++|++.|||..|+ |+.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 88 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GRRIR 88 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CEEEE
Confidence 345678999999999999999999999999999999998865443 39999999999999999999999995 89999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99975
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-21 Score=130.28 Aligned_cols=83 Identities=24% Similarity=0.321 Sum_probs=73.8
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCe
Q 032280 58 YGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACS 135 (144)
Q Consensus 58 ~~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~ 135 (144)
.....+.++|||+||+.++++++|+++|++||.|++|++..++.++. +||||+|.+.++|++|++.|||..|. |+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~ 86 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD--HLI 86 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET--TEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC--CcE
Confidence 33456678999999999999999999999999999999998754443 39999999999999999999999995 899
Q ss_pred EEEEeec
Q 032280 136 LLFPHSM 142 (144)
Q Consensus 136 l~v~~s~ 142 (144)
|+|+|+.
T Consensus 87 l~v~~a~ 93 (103)
T 2cq0_A 87 LNVEWAK 93 (103)
T ss_dssp CEEEESS
T ss_pred EEEEECC
Confidence 9999975
No 14
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.8e-21 Score=129.90 Aligned_cols=82 Identities=23% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeec-C--CCCCcEEEEEeCCHHHHHHHHHHh-cCCccCCCCC
Q 032280 59 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-T--QNSQPFAFAVFSDQQSALGAMYAL-NNFAPSDSAC 134 (144)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~-~--~~~~~~aFV~F~~~~~A~~A~~~l-nG~~~~~~g~ 134 (144)
......++|||+||+.++++++|+++|++||.|++|++..+ + +..++||||+|.+.++|++|++.| ||..|. |+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~--g~ 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY--GR 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS--SC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC--CC
Confidence 34456789999999999999999999999999999999877 2 333459999999999999999999 999995 88
Q ss_pred eEEEEeec
Q 032280 135 SLLFPHSM 142 (144)
Q Consensus 135 ~l~v~~s~ 142 (144)
.|+|+|+.
T Consensus 88 ~l~v~~a~ 95 (107)
T 2cph_A 88 RLVLEWAD 95 (107)
T ss_dssp BCEEEECC
T ss_pred EEEEEeCC
Confidence 99999975
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6.1e-21 Score=127.69 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=72.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
...+.++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v 90 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK--ENIIKV 90 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS--SCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEE
Confidence 3456789999999999999999999999999999999987622 2349999999999999999999999995 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 91 ~~a~ 94 (100)
T 2do4_A 91 AISN 94 (100)
T ss_dssp EECC
T ss_pred EECC
Confidence 9975
No 16
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=127.76 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCC
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYES--------SHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSD 131 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~--------v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~ 131 (144)
...++||||||+.++++++|+++|++||.|.+ |++..++.+++ +||||+|.+.++|++|++.|||..|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~- 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 34689999999999999999999999999999 99988865443 49999999999999999999999995
Q ss_pred CCCeEEEEee
Q 032280 132 SACSLLFPHS 141 (144)
Q Consensus 132 ~g~~l~v~~s 141 (144)
|+.|+|+|+
T Consensus 90 -g~~l~V~~A 98 (99)
T 2la6_A 90 -GNPIKVSFA 98 (99)
T ss_dssp -SSBCEEEEC
T ss_pred -CcEEEEEec
Confidence 889999986
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.6e-21 Score=126.91 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|++.++|++|++.|||..|+ |+.|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA--GRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEE
Confidence 35689999999999999999999999999999999987543 3449999999999999999999999995 8889999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 81 ~a~ 83 (95)
T 2dnz_A 81 HVT 83 (95)
T ss_dssp ESS
T ss_pred Ecc
Confidence 875
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=5.4e-21 Score=130.97 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=73.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 59 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
....+.++|||+||+.++++++|+++|++||.|++|++..++.++. +||||+|.+.++|++|++.|||..|. |+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 87 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GRQI 87 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET--TEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 3445678999999999999999999999999999999998854443 49999999999999999999999995 8899
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 88 ~V~~a~ 93 (115)
T 2dgo_A 88 RTNWAT 93 (115)
T ss_dssp EEEESS
T ss_pred EEEEcc
Confidence 999975
No 19
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=3.5e-21 Score=132.47 Aligned_cols=81 Identities=25% Similarity=0.297 Sum_probs=71.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
...+.++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|.+.++|++|++.|||..|+ |+.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 113 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG--TKRLK 113 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET--TEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC--CEEEE
Confidence 3456789999999999999999999999999999999887543 3449999999999999999999999995 89999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99874
No 20
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=132.38 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=69.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...+++|||+||++++++++|+++|++||.|.+|++++++ +||||+|++.++|.+|++.|||..+.-+|+.|+|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k----g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK----RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 3457899999999999999999999999999999997543 399999999999999999999987422599999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
|.
T Consensus 94 S~ 95 (100)
T 3r27_A 94 ST 95 (100)
T ss_dssp CS
T ss_pred cc
Confidence 85
No 21
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=2.2e-21 Score=127.72 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++++++|+++|++||.|++|++..+.+..++||||+|.+.++|++|++.|||..|+ |+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS--GREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT--TBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEc
Confidence 456899999999999999999999999999999998865445559999999999999999999999995 888999987
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 84 ~ 84 (92)
T 2dgv_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 5
No 22
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-21 Score=129.62 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~----~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.+.++|||+||+.++++++|+ ++|++||.|.+|++..++.+ ++||||+|++.++|++|++.|||..|+ |+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~--gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIG--SKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEET--TEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEEC--CeEEE
Confidence 346799999999999999999 99999999999999988666 669999999999999999999999995 89999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 84 V~~a~ 88 (96)
T 2dgx_A 84 VSLAT 88 (96)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99975
No 23
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=128.11 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=71.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+.++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~ 83 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ--GRMLHVL 83 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEE
Confidence 45789999999999999999999999999999999887533 3349999999999999999999999995 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 84 ~a~ 86 (99)
T 1whw_A 84 PST 86 (99)
T ss_dssp ECC
T ss_pred EcC
Confidence 975
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=4.7e-21 Score=123.80 Aligned_cols=76 Identities=26% Similarity=0.411 Sum_probs=69.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
.+|||+||+.++++++|+++|++||.|.++++.++..++. +||||+|.+.++|++|++.|||..++ |+.|+|+|+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC--CcEEEEEecC
Confidence 5899999999999999999999999999999998855443 39999999999999999999999995 8999999975
No 25
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.5e-21 Score=130.30 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=68.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++|||+||+++++|++|+++|++||.|.+|+++.+ ++||||+|++.++|++|++.|||..+.-.|+.|+|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 345789999999999999999999999999999998754 3499999999999999999998765222589999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 88 a~ 89 (104)
T 1wex_A 88 ST 89 (104)
T ss_dssp CS
T ss_pred cc
Confidence 85
No 26
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.7e-21 Score=128.40 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||+.++++++|+++|++||.|++|++..++.++ ++||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v 89 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY--GKPIRV 89 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS--SCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEE
Confidence 3567899999999999999999999999999999998875433 349999999999999999999999995 889999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 90 ~~a~ 93 (105)
T 1x5u_A 90 NKAS 93 (105)
T ss_dssp EETT
T ss_pred EECC
Confidence 9875
No 27
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.8e-21 Score=128.27 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+.++|||+||+.++++++|+++|++||.|.+|++..++.++. +||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPISVD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS--SSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC--CcEEEEE
Confidence 4568999999999999999999999999999999998865443 49999999999999999999999995 8899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 975
No 28
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=4e-21 Score=131.74 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
..+.++|||+||+.++++++|+++|++||.|++|+++.++.++. +||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V 99 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG--MKRLKV 99 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC--CEEEEE
Confidence 34568999999999999999999999999999999998864443 39999999999999999999999995 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 100 ~~a~ 103 (115)
T 2cpz_A 100 QLKR 103 (115)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9875
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=129.35 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=72.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
...+.++|||+||+.++++++|+++|++||.|.+|++..++.++ ++||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD--GRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT--TBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEE
Confidence 34567899999999999999999999999999999998875433 349999999999999999999999995 88999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 87 V~~a~ 91 (103)
T 2dnm_A 87 VQVAR 91 (103)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99975
No 30
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.1e-21 Score=126.88 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|++|+++.++.+ .++||||+|++.++|++|++ |||..|. |+.|+|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~l~V~ 84 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM--GKKVEVK 84 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS--SCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC--CeEEEEE
Confidence 45789999999999999999999999999999999887543 34599999999999999998 9999995 8899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 85 ~a~ 87 (99)
T 2dgs_A 85 RAE 87 (99)
T ss_dssp ECC
T ss_pred ECC
Confidence 875
No 31
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2e-21 Score=132.33 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=68.6
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCc--cCCCCCeEE
Q 032280 61 YDEVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFA--PSDSACSLL 137 (144)
Q Consensus 61 ~~~~~tLfVgnLp~-~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~--~~~~g~~l~ 137 (144)
.+..++|||+||++ +++|+||+++|++||.|.+|++++++ +||||+|++.++|++|++.|||.. | .|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALV--FGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEE--TTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceE--CCcEEE
Confidence 45678999999999 99999999999999999999998654 399999999999999999999764 6 599999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 86 V~~a~ 90 (102)
T 1x4d_A 86 VHLSQ 90 (102)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99986
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=131.36 Aligned_cols=80 Identities=13% Similarity=0.187 Sum_probs=70.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCC--eEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCc----cCCCC
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPG--YESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFA----PSDSA 133 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~--v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~----~~~~g 133 (144)
..-.||||+||+.++|+++|+++|++||. +.+|++++|+.++ ++||||+|.+.++|++|++.|||.. ++ |
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~--G 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID--G 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET--T
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC--C
Confidence 45689999999999999999999999995 6789998886544 4499999999999999999999984 54 8
Q ss_pred CeEEEEeecC
Q 032280 134 CSLLFPHSMA 143 (144)
Q Consensus 134 ~~l~v~~s~~ 143 (144)
+.|+|+|+..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999863
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=128.11 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
..+.++|||+||+.++++++|+++|++||.|++|++..++.++ ++||||+|++.++|++|++.|||..|. |+.|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v 86 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD--GRQIRV 86 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT--SCCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEE
Confidence 3567899999999999999999999999999999998875433 449999999999999999999999995 888999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 87 ~~a~ 90 (102)
T 1x5s_A 87 DQAG 90 (102)
T ss_dssp EEEE
T ss_pred EECC
Confidence 9875
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.5e-20 Score=126.68 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=71.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCC-CCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSD-SACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~-~g~~l~v 138 (144)
....++|||+||+.++++++|+++|++||.|++|++..+..+. ++||||+|.+.++|++|++.|||..+.+ .++.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 3567899999999999999999999999999999999875322 3499999999999999999999999841 1289999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 92 ~~a~ 95 (105)
T 2dnh_A 92 KFAD 95 (105)
T ss_dssp EESC
T ss_pred EECc
Confidence 9875
No 35
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-21 Score=129.14 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ-----NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~-----~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
.+.++|||+||+.++++++|+++|++||.|++|++..+.. ..++||||+|.+.++|++|++.|||..|+ |+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD--GHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET--TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC--CeEE
Confidence 4568999999999999999999999999999999988754 22349999999999999999999999995 8899
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 81 ~V~~a~ 86 (98)
T 2cpf_A 81 EVRISE 86 (98)
T ss_dssp EEECSS
T ss_pred EEEEcc
Confidence 999875
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=5.4e-21 Score=127.21 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=70.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
.++|||+||+.++++++|+++|++||.|.+|++..++.++ ++||||+|.+.++|++|++.|||..++ |+.|+|+|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG--SRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEEc
Confidence 4799999999999999999999999999999998875433 449999999999999999999999995 899999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 80 ~ 80 (96)
T 2x1f_A 80 S 80 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 37
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-21 Score=133.22 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=68.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNN--FAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG--~~~~~~g~~l~ 137 (144)
+....++|||+||+++++|++|+++|++||.|++|++++++ +||||+|++.++|++|++.||| ..| .|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k----GfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTSCCEE--TTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhccCCceE--CCEEEE
Confidence 34567899999999999999999999999999999998653 4999999999999999999875 677 489999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 86 V~~A~ 90 (105)
T 1sjq_A 86 IQFSN 90 (105)
T ss_dssp BCCCS
T ss_pred EEEcC
Confidence 99875
No 38
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=125.44 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=69.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++|||+||+.++++++|+++|++||.|++|++..+ ++||||+|++.++|++|++.|||..|.+.|+.|+|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 345689999999999999999999999999999998754 3499999999999999999999999953388999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 90 a~ 91 (97)
T 1why_A 90 AK 91 (97)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 39
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=126.95 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
....++|||+||+.++++++|+++|++||.|++|++..++.+. ++||||+|++.++|++|++.|||..|. |+.|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY--GRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC--CCEEEEE
Confidence 4567899999999999999999999999999999999875422 339999999999999999999999995 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 40
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=128.56 Aligned_cols=80 Identities=21% Similarity=0.440 Sum_probs=71.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.....++|||+||+.++++++|+++|++||.|++|++..++. .++||||+|++.++|++|++.|||..|+ |+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYD--GYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 345678999999999999999999999999999999976533 4459999999999999999999999994 8899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 95 ~a~ 97 (109)
T 1x4a_A 95 FPR 97 (109)
T ss_dssp CCC
T ss_pred Ecc
Confidence 975
No 41
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=129.06 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=72.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.....++|||+||+.++++++|+++|++||.|.+|++..++.+++ +||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~--g~~l~ 99 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA--GRPMK 99 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS--SSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEE
Confidence 345678999999999999999999999999999999998755443 49999999999999999999999995 88999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 100 V~~a~ 104 (108)
T 2jrs_A 100 VGHVT 104 (108)
T ss_dssp EECSC
T ss_pred EEEcc
Confidence 99875
No 42
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.5e-21 Score=123.77 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=69.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHh-cCCccCCCCCeEEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL-NNFAPSDSACSLLFP 139 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~l-nG~~~~~~g~~l~v~ 139 (144)
....++|||+||+.++++++|+++|++||.|.+|++..++ +||||+|++.++|++|++.| ||..++ |+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k----g~afV~f~~~~~A~~a~~~l~~~~~~~--g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ----QCAFIQFATRQAAEVAAEKSFNKLIVN--GRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG----TEEEEEESSHHHHHHHHHTTTTTCEET--TEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC----CEEEEEECCHHHHHHHHHHhcCCeeEC--CCEEEEE
Confidence 3567899999999999999999999999999999998653 39999999999999999999 999995 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 43
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=127.90 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=72.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhc------CCccCCC
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALN------NFAPSDS 132 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~ln------G~~~~~~ 132 (144)
....++|||+||+.++++++|+++|++||.|.+|++.+++.++ ++||||+|.+.++|++|++.|| |..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~-- 89 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD-- 89 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc--
Confidence 4567899999999999999999999999999999998875543 4499999999999999999999 99994
Q ss_pred CCeEEEEeec
Q 032280 133 ACSLLFPHSM 142 (144)
Q Consensus 133 g~~l~v~~s~ 142 (144)
|+.|+|+|+.
T Consensus 90 g~~l~v~~a~ 99 (111)
T 1x4h_A 90 GRQLKVDLAV 99 (111)
T ss_dssp SCEEEEECCC
T ss_pred CEEEEEEECC
Confidence 8999999975
No 44
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=1.4e-21 Score=128.91 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=66.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFP--GYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G--~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
.+||||||++++++++|+++|++|| .|.+|++..++.+++ +||||+|.+.++|++|++.|||..|+ |+.|+|++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~--gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH--GQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS--SCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC--CEEEEEEE
Confidence 4799999999999999999999999 999999998865444 49999999999999999999999995 88899988
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 80 ~~ 81 (90)
T 3p5t_L 80 SN 81 (90)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 45
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.2e-21 Score=130.12 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=71.9
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCe
Q 032280 58 YGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACS 135 (144)
Q Consensus 58 ~~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~ 135 (144)
.......++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|++.++|++|++.||| .|. |+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~--g~~ 87 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID--GRK 87 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET--TEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC--CEE
Confidence 334556789999999999999999999999999999999887543 344999999999999999999999 774 899
Q ss_pred EEEEeec
Q 032280 136 LLFPHSM 142 (144)
Q Consensus 136 l~v~~s~ 142 (144)
|+|+|+.
T Consensus 88 l~V~~a~ 94 (116)
T 2cqd_A 88 ANVNLAY 94 (116)
T ss_dssp CEEEEST
T ss_pred EEEEEcc
Confidence 9999974
No 46
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=128.06 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeE-EEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCe--
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYE-SSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACS-- 135 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~-~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~-- 135 (144)
....++|||+||+.++++++|+++|++||.|+ +|++..++.++. +||||+|.+.++|++|++.|||..++ |+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP--GATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES--SCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC--CCCcc
Confidence 35678999999999999999999999999999 999998865443 49999999999999999999999995 666
Q ss_pred --EEEEeec
Q 032280 136 --LLFPHSM 142 (144)
Q Consensus 136 --l~v~~s~ 142 (144)
|+|+|+.
T Consensus 84 ~~l~v~~a~ 92 (99)
T 2div_A 84 KRFKLNYAT 92 (99)
T ss_dssp EECCEEETT
T ss_pred eeEEEeecC
Confidence 9999874
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.2e-21 Score=128.77 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=72.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V 86 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIRV 86 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET--TEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEE
Confidence 356789999999999999999999999999999999887443 3449999999999999999999999994 899999
Q ss_pred EeecC
Q 032280 139 PHSMA 143 (144)
Q Consensus 139 ~~s~~ 143 (144)
+|+..
T Consensus 87 ~~a~~ 91 (102)
T 2cqb_A 87 NLAKP 91 (102)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99753
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=6.5e-22 Score=131.29 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=67.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhc-CCccCCCCCeEEEE
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALN-NFAPSDSACSLLFP 139 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G-~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~ln-G~~~~~~g~~l~v~ 139 (144)
+++|||+|||.++||++|+++|++|| .|++|++++++.+ .++||||+|.+.++|++|++.|+ |..++ |+.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~--gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL--GQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET--TEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC--CEEEEEE
Confidence 47899999999999999999999999 7999999887544 34599999999999999999885 55674 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 79 ~a~ 81 (91)
T 2lxi_A 79 YSD 81 (91)
T ss_dssp CCC
T ss_pred EcC
Confidence 985
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=124.18 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=70.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN---SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~---~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
+.++|||+||+.++++++|+++|++||.|.+|++..+..+ .++||||+|++.++|++|++.|||..++ |+.|+|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID--GQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC--CeEEEEE
Confidence 4589999999999999999999999999999999887543 3449999999999999999999999995 8999999
Q ss_pred eecC
Q 032280 140 HSMA 143 (144)
Q Consensus 140 ~s~~ 143 (144)
++..
T Consensus 81 ~a~~ 84 (88)
T 4a8x_A 81 AVLA 84 (88)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8753
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=7.9e-21 Score=128.26 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAP-SDSACSLL 137 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l~ 137 (144)
..+.++|||+||+.++++++|+++|++||.|.+|++..++.+ .++||||+|.+.++|++|++.|||..+ .+.++.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 356789999999999999999999999999999999887543 344999999999999999999999885 44589999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 90 v~~a~ 94 (106)
T 2dgp_A 90 VKPAD 94 (106)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99875
No 51
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=6.4e-21 Score=138.47 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFP--GYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G--~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.+.++||||||+++++|++|+++|++|| .|.+|+++.|+.+++ +||||+|.+.++|++||+.|||..|+ |+.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~--Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN--GEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET--TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CeEeE
Confidence 4568999999999999999999999999 999999998865554 49999999999999999999999995 89999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+++.
T Consensus 131 V~~a~ 135 (156)
T 3n9u_C 131 VRPAT 135 (156)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99863
No 52
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=1.5e-20 Score=127.00 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=71.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.....++|||+||+.++++++|+++|++||.|++|++..++.+. ++||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD--GRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEE
Confidence 34567899999999999999999999999999999999886222 339999999999999999999999994 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 53
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=127.28 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=68.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc--CCccCCCCCeE
Q 032280 59 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--NFAPSDSACSL 136 (144)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln--G~~~~~~g~~l 136 (144)
......++|||+||+++++|++|+++|++||.|.+|++..+ ++||||+|++.++|++|++.|| |..+ .|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHL--RNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEE--TTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceE--CCcEE
Confidence 33456789999999999999999999999999999998764 3499999999999999999875 5667 48999
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 84 ~V~~a~ 89 (101)
T 2cq1_A 84 YIQYSN 89 (101)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999975
No 54
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=8.8e-21 Score=133.52 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=73.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 59 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
...+..++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|++.++|++|++.|||..|+ |+.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~--g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS--SSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 34456789999999999999999999999999999999887543 3449999999999999999999999995 8899
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 119 ~V~~a~ 124 (129)
T 2kxn_B 119 RVDFSI 124 (129)
T ss_dssp EESCCS
T ss_pred EEEEec
Confidence 999875
No 55
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=130.51 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ-NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~-~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
+..++|||+||+.++++++|+++|++||.|++|++..++. ..++||||+|++.++|++|++.|||..|. |+.|+|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~--g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH--GKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS--SSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEE
Confidence 5568999999999999999999999999999999988752 23349999999999999999999999995 88999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 83 a~ 84 (116)
T 2fy1_A 83 AK 84 (116)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 56
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6e-21 Score=126.58 Aligned_cols=79 Identities=14% Similarity=0.272 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESS-HLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v-~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
...++|||+||+.++++++|+++|++||.|.+| ++..++.++ ++||||+|++.++|++|++.|||..|. |+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC--NRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET--TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEE
Confidence 356899999999999999999999999999999 998874433 349999999999999999999999994 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 81 ~~a~ 84 (96)
T 1x5t_A 81 SYAF 84 (96)
T ss_dssp EESC
T ss_pred EEec
Confidence 9975
No 57
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-21 Score=130.14 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHH---HHhhcCCCeEEEEEeecCCC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 032280 61 YDEVRTLFVAGLPEDVKPREIY---NLFREFPGYESSHLRSSTQN-----SQPFAFAVFSDQQSALGAMYALNNFAPSDS 132 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~---~~F~~~G~v~~v~l~~~~~~-----~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~ 132 (144)
....++|||+||+.++++++|+ ++|++||.|.+|++..++.+ .++||||+|++.++|++|++.|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-- 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--
Confidence 3456799999999999999999 99999999999999877542 2349999999999999999999999995
Q ss_pred CCeEEEEeec
Q 032280 133 ACSLLFPHSM 142 (144)
Q Consensus 133 g~~l~v~~s~ 142 (144)
|+.|+|+|+.
T Consensus 90 gr~l~V~~a~ 99 (111)
T 2cpi_A 90 GRTLKASLGT 99 (111)
T ss_dssp TEEEEEESCC
T ss_pred CEEEEEEecc
Confidence 8999999875
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=4e-21 Score=129.33 Aligned_cols=79 Identities=13% Similarity=0.133 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCC------CCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 032280 62 DEVRTLFVAGLPE------DVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSA 133 (144)
Q Consensus 62 ~~~~tLfVgnLp~------~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g 133 (144)
...++|||+|||. ++++++|+++|++||.|.+|++.+++.++ ++||||+|.+.++|++|++.|||..|+ |
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD--L 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS--S
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC--C
Confidence 3468999999999 99999999999999999999999886543 449999999999999999999999995 6
Q ss_pred -CeEEEEeec
Q 032280 134 -CSLLFPHSM 142 (144)
Q Consensus 134 -~~l~v~~s~ 142 (144)
+.|+|+|+.
T Consensus 82 ~r~l~V~~a~ 91 (100)
T 3ns6_A 82 KHRLFLYTMK 91 (100)
T ss_dssp SCBCEEEESH
T ss_pred CeEEEEEECc
Confidence 899999864
No 59
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.3e-20 Score=128.07 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
..+.++|||+||+.++++++|+++|++||.|++|++..++.++ ++||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--GQTIQV 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEE
Confidence 3457899999999999999999999999999999998875443 349999999999999999999999995 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 101 ~~a~ 104 (110)
T 1oo0_B 101 DWCF 104 (110)
T ss_dssp EESE
T ss_pred EEcc
Confidence 9975
No 60
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=125.82 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=69.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++|||+||+.++++++|+++|++||.|++|++..++ +||||+|++.++|++|++.|||..|. |+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k----g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK----GFGFIRLETRTLAEIAKVELDNMPLR--GKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT----TEEEEECSSSHHHHHHHHHHTTCCBT--TBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC----CEEEEEECCHHHHHHHHHHhCCCEeC--CceEEEEE
Confidence 3456899999999999999999999999999999997543 39999999999999999999999995 88999998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 86 a~ 87 (99)
T 2cpj_A 86 AC 87 (99)
T ss_dssp SS
T ss_pred cC
Confidence 74
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=126.84 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=71.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
....++|||+||+.++++++|+++|++||.|++|++..++.+. ++||||+|++.++|++|++.|||..|. |+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF--DRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC--CCEEEEE
Confidence 3557899999999999999999999999999999999875422 339999999999999999999999995 8899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 90 ~a~ 92 (114)
T 2do0_A 90 MDE 92 (114)
T ss_dssp ECS
T ss_pred Ecc
Confidence 874
No 62
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=2.9e-20 Score=129.10 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=72.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.....++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|++.++|++|++.|||..|. |+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD--GRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS--SCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEE
Confidence 4456789999999999999999999999999999999887522 3449999999999999999999999994 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 109 ~~a~ 112 (124)
T 2kt5_A 109 QLVA 112 (124)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 63
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.4e-21 Score=128.97 Aligned_cols=79 Identities=24% Similarity=0.382 Sum_probs=71.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.+|++..++.++ ++||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS--GRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS--SSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEE
Confidence 356899999999999999999999999999999999875444 349999999999999999999999994 8889999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 84 ~a~ 86 (104)
T 1p1t_A 84 NAA 86 (104)
T ss_dssp ETT
T ss_pred eCC
Confidence 875
No 64
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=122.48 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++++++|+++|++||.|++|++. ++||||+|++.++|++|++.|||..+. |+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLH--GVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCS--SCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccC--CcEEEEEEC
Confidence 457899999999999999999999999999999986 239999999999999999999999994 889999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 78 ~ 78 (90)
T 2dnq_A 78 K 78 (90)
T ss_dssp S
T ss_pred C
Confidence 5
No 65
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=131.44 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=68.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNN--FAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG--~~~~~~g~~l~ 137 (144)
.....++|||+||+++++|++|+++|++||.|++|+++.++ +||||+|++.++|++|++.||| ..| .|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k----G~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG----TEEEEECSCHHHHHHHHHHHHHHCCCB--TTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----CEEEEEECCHHHHHHHHHHhccCCceE--CCeEEE
Confidence 34557899999999999999999999999999999998763 3999999999999999999985 567 489999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 101 V~~a~ 105 (119)
T 2ad9_A 101 IQFSN 105 (119)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99985
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=128.00 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=71.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeE--------EEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCcc
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYE--------SSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAP 129 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~--------~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~ 129 (144)
.....++|||+||+.++++++|+++|++||.|. .|++..++.++ ++||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 69998875443 34999999999999999999999999
Q ss_pred CCCCCeEEEEeec
Q 032280 130 SDSACSLLFPHSM 142 (144)
Q Consensus 130 ~~~g~~l~v~~s~ 142 (144)
. |+.|+|+|+.
T Consensus 91 ~--g~~l~V~~a~ 101 (113)
T 2cpe_A 91 Q--GSKLKVSLAR 101 (113)
T ss_dssp T--TEECEEECSS
T ss_pred C--CCEEEEEECC
Confidence 4 8999999875
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=9.7e-21 Score=126.14 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=70.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||+.++++++|+++|++||.|.+++++.++.++ ++||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V 89 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRKVKL 89 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET--TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC--CeEEEE
Confidence 3456899999999999999999999999999888777765544 349999999999999999999999995 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 90 ~~a~ 93 (98)
T 2cqp_A 90 VLGS 93 (98)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9874
No 68
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=127.30 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=72.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 59 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
....+.++|||+||+.++++++|+++|++||.|++|++..++.++. +||||+|++.++|++|++. ||..|+ |+.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~--g~~l 87 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD--GRNI 87 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET--TEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC--CEEE
Confidence 3456779999999999999999999999999999999998855443 4999999999999999998 999995 8899
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 88 ~V~~a~ 93 (105)
T 2dh8_A 88 DPKPCT 93 (105)
T ss_dssp BCCCSC
T ss_pred EEEEcc
Confidence 998875
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.1e-20 Score=124.39 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||+.++++++|+++|++|| |++|+++.++.+++ +||||+|++.++|++|+ .|||..|. |+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V 87 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG--DRSLRV 87 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET--TEECEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC--CeEEEE
Confidence 45678999999999999999999999996 99999998865443 39999999999999999 99999994 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 88 ~~a~ 91 (103)
T 2dng_A 88 DIAE 91 (103)
T ss_dssp EECC
T ss_pred EEec
Confidence 9975
No 70
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.84 E-value=3.1e-20 Score=127.18 Aligned_cols=78 Identities=21% Similarity=0.349 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
+..++|||+||+.++++++|+++|++||.|.+|++..+..+ ++||||+|.+.++|.+|++.|||..++ |+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET-RGTAYVVYEDIFDAKNAVDHLSGFNVS--NRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT-TTCEEEEESSHHHHHHHHHHHTTCBSS--SCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC-CcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEEe
Confidence 45689999999999999999999999999999999876443 559999999999999999999999995 889999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 83 ~ 83 (115)
T 3lqv_A 83 N 83 (115)
T ss_dssp C
T ss_pred c
Confidence 5
No 71
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=131.45 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=70.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.....++|||+||+.++++++|+++|++||.|+++++..++.+ .++||||+|++.++|++|++.|||..|. |+.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET--TEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC--CEEEE
Confidence 3456789999999999999999999999999999999887443 3449999999999999999999999995 89999
Q ss_pred EEee
Q 032280 138 FPHS 141 (144)
Q Consensus 138 v~~s 141 (144)
|+|+
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9985
No 72
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.83 E-value=2e-20 Score=137.23 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
..+.+|||+||++++++++|+++|++||.|++|++..++ .+.||||+|+|.++|++|++.|||..|.+.++.|+|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 456789999999999999999999999999999986432 344999999999999999999999999655699999998
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 122 k 122 (164)
T 1sjr_A 122 K 122 (164)
T ss_dssp S
T ss_pred c
Confidence 6
No 73
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-21 Score=125.06 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.+|++..++.++ ++||||+|++.++|++|++.|||..++ |+.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ--AQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC--EESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe--eEEEeec
Confidence 456899999999999999999999999999999998875433 449999999999999999999999994 7888887
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
|+
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=127.53 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=69.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ-NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~-~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...++||||||+.++|+++|+++|++||.|.+|++.++.. ..++||||+|++.++|++|++ +||..|+ |+.|+|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~--gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK--ETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT--TTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC--CEEEEEEE
Confidence 4568999999999999999999999999999999998754 234599999999999999998 9999995 88899988
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
..
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 75
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=3.6e-20 Score=120.83 Aligned_cols=78 Identities=15% Similarity=0.289 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||+.++++++|+++|++||.|.+|++..++.+++ +||||+|.+.++|++|++ ++|..|+ |+.|+|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~i~v 84 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD--GRVIDP 84 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET--TEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC--CEEEEE
Confidence 45678999999999999999999999999999999998865443 499999999999999995 5888884 899999
Q ss_pred Eee
Q 032280 139 PHS 141 (144)
Q Consensus 139 ~~s 141 (144)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 76
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=127.39 Aligned_cols=80 Identities=10% Similarity=0.155 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCC-
Q 032280 62 DEVRTLFVAGLPEDV------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSAC- 134 (144)
Q Consensus 62 ~~~~tLfVgnLp~~v------te~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~- 134 (144)
...++||||||+.++ ++++|+++|++||.|.+|++....+..++||||+|.+.++|++|++.|||..|+ |+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~--g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--KQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS--TTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC--CCc
Confidence 446899999999999 789999999999999999987544445569999999999999999999999995 77
Q ss_pred eEEEEeecC
Q 032280 135 SLLFPHSMA 143 (144)
Q Consensus 135 ~l~v~~s~~ 143 (144)
.|+|+|+..
T Consensus 91 ~l~V~~a~~ 99 (105)
T 2nlw_A 91 TFRVNLFTD 99 (105)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEcch
Confidence 899998753
No 77
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=2.4e-20 Score=121.88 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=69.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
+.++|||+||+.++++++|+++|++||.|.+|++..++.++ ++||||+|.+.++|++|+ .|||..|. |+.|+|++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~--g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR--GRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET--TEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC--CcEEEEEE
Confidence 45899999999999999999999999999999999875433 449999999999999999 99999994 89999998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 82 a~ 83 (89)
T 3ucg_A 82 KR 83 (89)
T ss_dssp TT
T ss_pred cc
Confidence 75
No 78
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=3e-20 Score=129.12 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+.++|||+||+.++++++|+++|++||.|.+|++..++.++ ++||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~ 97 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPISVD 97 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS--SSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CeEEEEE
Confidence 456899999999999999999999999999999998875443 349999999999999999999999995 8899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 875
No 79
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=125.34 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=68.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCC-----CeE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSA-----CSL 136 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g-----~~l 136 (144)
...++|||+||++++++++|+++|++||.|++|++..+ +||||+|++.++|++||+.|||..|. | +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFR--SHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEE--CTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCcc--CCcCcceEE
Confidence 45689999999999999999999999999999999876 49999999999999999999999995 5 889
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+++.
T Consensus 86 ~V~~a~ 91 (108)
T 1x4c_A 86 RVKVDG 91 (108)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 999864
No 80
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=125.19 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCc-cCCCCCeE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFA-PSDSACSL 136 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~-~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~-~~~~g~~l 136 (144)
....++|||+||+.++++++|+++|++ ||.|.+|++..++ ++ ++||||+|.+.++|++|++.|||.. |. |+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~--g~~l 82 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG--SKPV 82 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS--SSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC--CEeE
Confidence 355689999999999999999999999 9999999999886 33 3499999999999999999999999 85 8889
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 83 ~v~~a~ 88 (104)
T 2dhg_A 83 RLSVAI 88 (104)
T ss_dssp CCCBCC
T ss_pred EEEEcc
Confidence 998874
No 81
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=122.36 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++|||+||+.++++++|+++|++||.|++|++.++ ||||+|++.++|++|++.|||..|. |+.|+|+|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD------YAFVHMERAEDAVEAIRGLDNTEFQ--GKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS------EEEEEESCHHHHHHHHHHHTTEEET--TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC------EEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEE
Confidence 356789999999999999999999999999999998632 9999999999999999999999994 89999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 79 a~ 80 (92)
T 2dgt_A 79 ST 80 (92)
T ss_dssp SS
T ss_pred cc
Confidence 75
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=7.5e-21 Score=122.95 Aligned_cols=72 Identities=11% Similarity=0.228 Sum_probs=63.8
Q ss_pred ceEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCC-eEE
Q 032280 65 RTLFVAGLPEDV------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSAC-SLL 137 (144)
Q Consensus 65 ~tLfVgnLp~~v------te~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~-~l~ 137 (144)
++|||||||.++ ++++|+++|++||.|.+|++..+.+..++||||+|.+.++|++|++.|||..|+ |+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--KQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS--SSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC--CceeEE
Confidence 789999999999 779999999999999999987544445569999999999999999999999995 66 676
Q ss_pred E
Q 032280 138 F 138 (144)
Q Consensus 138 v 138 (144)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 83
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.4e-20 Score=126.13 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=68.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++||||||+.++++++|+++|++||.|++|++..+ ++||||+|.+.++|++|++.|||..+. |+.|+|+|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE----KGCCFIKYDTHEQAAVCIVALANFPFQ--GRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEET--TEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEec
Confidence 34689999999999999999999999999999998743 339999999999999999999999995 899999987
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 5
No 84
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=124.08 Aligned_cols=78 Identities=26% Similarity=0.332 Sum_probs=69.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN---SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~---~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
....++|||+||+.++++++|+++|++|| |++|++..++.+ .++||||+|++.++|++|+ .|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~ 87 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG--NKRIR 87 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET--TEECE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC--CcEEE
Confidence 34568999999999999999999999999 999999887543 3449999999999999999 99999994 88999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 88 V~~a~ 92 (104)
T 1wi8_A 88 VDVAD 92 (104)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99875
No 85
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=6.4e-21 Score=128.09 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=67.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC---CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST---QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~---~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
...++||||||+.++++++|+++|++|| |.+|++..++ +..++||||+|.+.++|++|+ .|||..|. |+.|+|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~--g~~l~V 92 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG--NRRIRV 92 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT--TBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC--CeEEEE
Confidence 4569999999999999999999999999 9999998875 223449999999999999999 99999994 888999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 93 ~~a~ 96 (100)
T 2j76_E 93 DVAD 96 (100)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9875
No 86
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=5.8e-20 Score=132.23 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|++|+|..++.++. +||||+|++.++|++|++.|||..|+ |+.|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD--DRIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEE
Confidence 4568999999999999999999999999999999998865444 49999999999999999999999994 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 115 ~a~ 117 (156)
T 1h2v_Z 115 WDA 117 (156)
T ss_dssp EES
T ss_pred ECC
Confidence 985
No 87
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=128.62 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+.++|||+||+.++++++|+++|++||.|++|+++.++.+ .++||||+|.+.++|++|+ .|||..|. |+.|+|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V~ 99 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL--GVPIIVQ 99 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET--TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC--CeEEEEE
Confidence 45689999999999999999999999999999999887653 3449999999999999999 99999994 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 100 ~a~ 102 (114)
T 2cq4_A 100 ASQ 102 (114)
T ss_dssp EHH
T ss_pred ecC
Confidence 874
No 88
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.4e-20 Score=122.29 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=67.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++|||+||+.++++++|+++|++||.|. ++++.+ ..++||||+|.+.++|++|++.|||..|. |+.|+|+|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLG--TDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSS--SSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEE
Confidence 34568999999999999999999999999996 666654 33449999999999999999999999995 88899998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 91 a~ 92 (97)
T 2e5j_A 91 AR 92 (97)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 89
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=3.1e-20 Score=126.83 Aligned_cols=74 Identities=24% Similarity=0.281 Sum_probs=68.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++||||||+.++++++|+++|++||.|++|++. ++||||+|++.++|++|++.|||..| .|+.|+|+|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEE
Confidence 4567899999999999999999999999999999987 33999999999999999999999999 489999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 100 a~ 101 (108)
T 2jvo_A 100 SK 101 (108)
T ss_dssp CS
T ss_pred ec
Confidence 75
No 90
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=1.1e-20 Score=125.13 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=69.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.+++++.++.+++ +||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC--CcEEEEE
Confidence 3458999999999999999999999999998888877655443 49999999999999999999999994 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 874
No 91
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=127.36 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=67.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
..++|||+||+.++++++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.|||..|+ |+.|+|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG----GITAIVEFLEPLEARKAFRHLAYSKFH--HVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS----SSCEEEEESCHHHHHHHHHHHTTCBSS--SSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCEEC--CeEEEEEECC
Confidence 4579999999999999999999999999999998643 339999999999999999999999995 8899999974
No 92
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=2.4e-20 Score=123.77 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=66.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
+..||||||++.+||++|+++|.+||.|.++++..++ +||||+|.|.++|++|++.|||..+. |+.|+|++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~k----GfaFVey~~~~eA~~Ai~~Ln~~~l~--gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQ----GIALCKYTTREEANKAQMALNNCVLA--NTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCC----cEEEEEECCHHHHHHHHHHhcCCEEC--CcEEEEEEC
Confidence 5679999999999999999999999999999997643 39999999999999999999999995 899999864
No 93
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=122.79 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=69.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEE-EeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSH-LRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~-l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
....++|||+||+.++++++|+++|++||.|.+|+ +..++.++ .|||+|.+.++|++|++.|||..|+ |+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~--~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA--VVNVTYSSKDQARQALDKLNGFQLE--NFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE--EEEEEESSHHHHHHHHHHHTTCBCS--SCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC--EEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEE
Confidence 34568999999999999999999999999999995 76665444 4999999999999999999999995 8899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 88 ~a~ 90 (96)
T 2e44_A 88 YIP 90 (96)
T ss_dssp ECC
T ss_pred EcC
Confidence 875
No 94
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-20 Score=125.96 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=69.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++++++|+++|++||.|.+|++..+ ++||||+|++.++|++|++.|||..|. |+.|+|+|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIE--GHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEET--TEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEec
Confidence 45689999999999999999999999999999999876 339999999999999999999999995 899999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 97 ~ 97 (109)
T 1x4g_A 97 K 97 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 95
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.82 E-value=4.9e-20 Score=130.51 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcE-EEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPF-AFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~-aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...-+|||+||++.+|+++|+++|++||.|.+|++..+. ++| |||+|++.++|++|++.|||..|.+..+.|+|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 345678999999999999999999999999999886532 346 9999999999999999999999964458999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
|.
T Consensus 103 ak 104 (130)
T 3zzy_A 103 SK 104 (130)
T ss_dssp CS
T ss_pred cC
Confidence 86
No 96
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-20 Score=128.54 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=67.3
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCC--ccCCCCCeEE
Q 032280 61 YDEVRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNF--APSDSACSLL 137 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~-vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~--~~~~~g~~l~ 137 (144)
....++|||+||+++ ++|++|+++|++||.|.+|++.+++ +||||+|++.++|++|++.|||. .| .|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~l--~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK----SQAFIEMETREDAMAMVDHCLKKALWF--QGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT----TEEEEECSSHHHHHHHHHHHHHSCCCS--SSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCHHHHHHHHHHhccCCceE--CCEEEE
Confidence 456789999999998 9999999999999999999997543 39999999999999999999764 46 489999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 96 V~~a~ 100 (112)
T 1x4f_A 96 VDLSE 100 (112)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 99985
No 97
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=121.58 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++++++|+++|++||.|.+|++.++ ||||+|.+.++|++|++.|||..|. |+.|+|+|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD------YAFVHMEKEADAKAAIAQLNGKEVK--GKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS------CEEEEESCHHHHHHHHHHHTTCEET--TEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC------EEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEC
Confidence 55789999999999999999999999999999998632 9999999999999999999999994 899999987
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 79 ~ 79 (90)
T 2dnp_A 79 T 79 (90)
T ss_dssp C
T ss_pred C
Confidence 5
No 98
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=129.27 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=68.3
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~----~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
...++||||||++++++++|+ ++|++||.|++|.+..+ +..++||||+|++.++|++|++.|||..|. |+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~--gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQ--GNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCT--TSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeC--CCEEE
Confidence 446899999999999999876 69999999999988643 334559999999999999999999999995 88999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 104 V~~a~ 108 (127)
T 2a3j_A 104 ITFSE 108 (127)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99975
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=2.2e-20 Score=118.68 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=65.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
+|||+||+.++++++|+++|++||.|.+|++..++.+ .++||||+|++.++|++|++ |||..++ |+.|+|+|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~--g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN--NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS--SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC--CEEEEEEeC
Confidence 5999999999999999999999999999999887543 34499999999999999997 9999995 888999874
No 100
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=1e-19 Score=121.85 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=67.0
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~-~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...++||||||+. ++++++|+++|++||.|.+|++. ++||||+|++.++|++|++.|||..+. |+.|+|+|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNF--GKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEET--TEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEe
Confidence 4568999999998 99999999999999999999983 339999999999999999999999995 89999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 92 a~ 93 (97)
T 2xnq_A 92 SS 93 (97)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 101
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=7e-20 Score=122.00 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=66.5
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 61 YDEVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 61 ~~~~~tLfVgnLp~-~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
....++|||+||+. ++++++|+++|++||.|.+|++. ++||||+|++.++|++|++.|||..+. |+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNF--GKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCB--TTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeC--CcEEEEE
Confidence 35678999999998 99999999999999999999984 239999999999999999999999995 8889999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 79 ~a~ 81 (96)
T 2kvi_A 79 VSS 81 (96)
T ss_dssp EEE
T ss_pred EcC
Confidence 875
No 102
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=131.83 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEE--EEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCC----ccCCC
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYES--SHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNF----APSDS 132 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~--v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~----~~~~~ 132 (144)
....++||||||+++++|++|+++|++||.|.. |+|++++.++ ++||||+|++. +|.+|++.|||. .|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~-- 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID-- 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC--
Confidence 355789999999999999999999999999976 9999886443 44999999999 999999999999 885
Q ss_pred CCeEEEEeec
Q 032280 133 ACSLLFPHSM 142 (144)
Q Consensus 133 g~~l~v~~s~ 142 (144)
|+.|+|+|+.
T Consensus 97 gr~l~V~~a~ 106 (131)
T 2m2b_A 97 GKTINVEFAK 106 (131)
T ss_dssp GCCCCCEECC
T ss_pred CEEEEEEECC
Confidence 8889998864
No 103
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.8e-19 Score=122.16 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCC------CC
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSD------SA 133 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~------~g 133 (144)
..+.++|||+||+.++++++|+++|++||.|.+|++..++.+ .++||||+|.+.++|++|++.|||..|++ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456689999999999999999999999999999999988622 23499999999999999999999999842 36
Q ss_pred CeEEEEeec
Q 032280 134 CSLLFPHSM 142 (144)
Q Consensus 134 ~~l~v~~s~ 142 (144)
+.|+|.|+.
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 779998874
No 104
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=6.1e-20 Score=127.21 Aligned_cols=77 Identities=10% Similarity=0.195 Sum_probs=69.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
+.++|||+||+.++++++|+++|++||.|++|++..++.++ ++||||+|.+.++|++|+ .|||..|+ |+.|+|+|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR--GRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET--TEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC--CeEEEEEE
Confidence 46899999999999999999999999999999998875443 349999999999999999 89999995 89999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 112 a~ 113 (124)
T 2jwn_A 112 KR 113 (124)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 105
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=2.4e-19 Score=125.98 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=66.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcE-EEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPF-AFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~-aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
+-.|||+||++.+++++|+++|++||.|++|++.. + . +| |||+|+|.++|++|++.|||..|.++.+.|+|+|+.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~--Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-N--GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-S--SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-C--CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34578999999999999999999999999999864 2 2 46 999999999999999999999997555799999975
No 106
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=8.1e-21 Score=124.70 Aligned_cols=75 Identities=16% Similarity=0.258 Sum_probs=67.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|++.+ |++|++.|||..+. |+.|+|+|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~--g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM--GRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS--SSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC--CeEEEEEEcC
Confidence 68999999999999999999999999999999887543 3449999999999 99999999999995 8889999874
No 107
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=3.8e-20 Score=124.00 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=67.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
++|||+||+.++++++|+++|++||.|++|++..+ .++||||+|++.++|++|++.|||..++ |+.|+|+|+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVIC--GSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSS--SCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeEC--CcEEEEEEcc
Confidence 47999999999999999999999999999999876 4449999999999999999999999995 8889999875
No 108
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=4.5e-20 Score=127.26 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=67.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G-~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...+|||+||++++++++|+++|++|| .|..+++..+ ..++||||+|++.++|++|++.|||..|+ |+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~--Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFR--GSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEET--TEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEEC
Confidence 457999999999999999999999999 8999988532 24459999999999999999999999994 899999987
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 109
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=119.16 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=67.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREF--PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~--G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.....++|||+||+.++++++|+++|++| |.|.+|++.+ +||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR------DYAFVHFSNREDAVEAMKALNGKVLD--GSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS------SEEEEEESSHHHHHHHHHHHSSEEET--TEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC------CeEEEEeCCHHHHHHHHHHhCCCEeC--CcEEE
Confidence 34567899999999999999999999999 9999988742 29999999999999999999999995 89999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 83 v~~a~ 87 (99)
T 2cpd_A 83 VTLAK 87 (99)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99975
No 110
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.6e-19 Score=129.76 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=71.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~ 145 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD--GRELRVQ 145 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS--SSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEE
Confidence 44689999999999999999999999999999999887433 4459999999999999999999999994 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 146 ~a~ 148 (158)
T 2kn4_A 146 MAR 148 (158)
T ss_dssp EEC
T ss_pred ECC
Confidence 975
No 111
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.6e-20 Score=121.28 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=66.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++|++ |||..|+ |+.|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~--g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLG--GHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEET--TEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEEC--CEEEEEEEC
Confidence 456899999999999999999999999999987 44555555 99999999999999999 9999995 888888875
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-20 Score=118.14 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=66.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
++|||+||+.++++++|+++|++||.|.+|++..++.+ .++||||+|.+.++|++|++.+| ..++ |+.|+|+|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~--g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD--SKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS--SCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC--CEEEEEEecC
Confidence 47999999999999999999999999999999887543 34599999999999999999999 8884 8889998863
No 113
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=1.4e-19 Score=129.37 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++||||||+.++++++|+++|++||.|++|++..+ .++||||+|.+.++|++|++.|||..|. |+.|+|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLC--GCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSS--SSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEE
Confidence 355789999999999999999999999999999999765 3449999999999999999999999994 88999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 145 a~ 146 (150)
T 2i2y_A 145 SN 146 (150)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 114
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=1.5e-19 Score=136.00 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...+|||||||+.++||++|+++|++||.|++|+|++++.+++. ||||+|.+.++|++|++.|||..+. |+.|++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~--g~~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK--GKPVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC--Ccccccc
Confidence 45689999999999999999999999999999999998665543 9999999999999999999999994 8889988
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
++.
T Consensus 91 ~~~ 93 (213)
T 4f02_A 91 WSQ 93 (213)
T ss_dssp ECC
T ss_pred ccc
Confidence 874
No 115
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=123.98 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=67.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
..+.++|||+||+.++++++|+++|++||.|++|++.+++.+ .++||||+|.+.++|++|++.+ |..| +|+.|+|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~V 98 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTIDP 98 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEEE
Confidence 356789999999999999999999999999999999887543 3459999999999999999876 5777 4899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+++.
T Consensus 99 ~~a~ 102 (109)
T 2rs2_A 99 KVAF 102 (109)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9875
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=1.2e-19 Score=122.27 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++++++|+++|++||.|++|++.+ + ||||+|++.++|++|++.|||..|. |+.|+|+|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--~----~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--D----YAFIHFDERDGAVKAMEEMNGKDLE--GENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--S----CEEEEESSHHHHHHHHHHHTTEEET--TEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--C----EEEEEeCCHHHHHHHHHHHCCCccC--CCEEEEEEc
Confidence 4568999999999999999999999999999999862 2 9999999999999999999999995 899999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 81 ~ 81 (103)
T 2dgu_A 81 K 81 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 117
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-19 Score=119.17 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=68.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
.....++|||+||+.++++++|+++|++||.|++|++..++.++. +||||+|++.++|++|++ +|..| .|+.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l~ 86 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWCD 86 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeEEE
Confidence 345678999999999999999999999999999999998865443 499999999999999998 57777 488999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 87 v~~a~ 91 (103)
T 2cqg_A 87 CKLPN 91 (103)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 118
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.8e-19 Score=118.52 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++|||+|| ++++++|+++|++||.|++|++.. .++||||+|++.++|++|++.|||..|. |+.|+|+|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP----PRNCAFVTYEKMESADQAVAELNGTQVE--SVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHTTTEEET--TEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEE
Confidence 346789999996 899999999999999999999853 2339999999999999999999999994 89999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 84 a~ 85 (97)
T 1x5p_A 84 AR 85 (97)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 119
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=4.9e-20 Score=122.34 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=69.0
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~----~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
...++|||+||+.++++++|+ ++|++||.|.+|++..+ +..++||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFY--DKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEEC--CcEEE
Confidence 457899999999999999999 99999999999998642 223349999999999999999999999994 89999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 83 v~~a~ 87 (97)
T 1nu4_A 83 IQYAK 87 (97)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99975
No 120
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.7e-20 Score=131.14 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=72.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
...+.++|||+||+.++++++|+++|++||.|++|++..++.+ .++||||+|++.++|++|++.|||..|. |+.|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~--g~~l~ 120 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD--GRELR 120 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS--SSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEE
Confidence 3456789999999999999999999999999999999877433 3449999999999999999999999995 88999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 121 V~~a~ 125 (135)
T 2lea_A 121 VQMAR 125 (135)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99975
No 121
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=125.52 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=70.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCe
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACS 135 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~---v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~ 135 (144)
...+.++|||+||++++|+++|+++|++||. |.+|+|++++.+. ++||||+|++.++|++|++ |||..|. |+.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr~ 89 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG--HRY 89 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET--TEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC--CeE
Confidence 3456789999999999999999999999999 8999998876532 3499999999999999998 9999994 889
Q ss_pred EEEEeec
Q 032280 136 LLFPHSM 142 (144)
Q Consensus 136 l~v~~s~ 142 (144)
|+|.++.
T Consensus 90 i~V~~a~ 96 (118)
T 2db1_A 90 IEVFKSH 96 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 9998863
No 122
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=117.54 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=68.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...++|||+||+.++++++|+++|++| .|.+|++.++..+ .++||||+|++.++|++|++ |||..|. |+.|+|++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~--gr~i~v~~ 83 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG--GRYIEVFR 83 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET--TEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC--CcEEEEEE
Confidence 567899999999999999999999999 9999999987322 23499999999999999999 9999994 88999998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 84 a~ 85 (91)
T 2dgw_A 84 EK 85 (91)
T ss_dssp ES
T ss_pred CC
Confidence 75
No 123
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=122.71 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEe-ecCC--CCCcEEEEEeCCHHHHHHHHHHhc--CCccCCCCCe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLR-SSTQ--NSQPFAFAVFSDQQSALGAMYALN--NFAPSDSACS 135 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~-v~~v~l~-~~~~--~~~~~aFV~F~~~~~A~~A~~~ln--G~~~~~~g~~ 135 (144)
.+.++|||+||+.++++++|+++|++||. |.+|++. .++. ..++||||+|.+.++|++|++.|| +..+. |+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~--g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW--GHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT--TBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec--CCe
Confidence 35689999999999999999999999998 9999987 5544 334599999999999999999996 47884 889
Q ss_pred EEEEeec
Q 032280 136 LLFPHSM 142 (144)
Q Consensus 136 l~v~~s~ 142 (144)
|+|+|+.
T Consensus 84 l~V~~a~ 90 (109)
T 2dis_A 84 IAVDWAE 90 (109)
T ss_dssp CEEEESC
T ss_pred EEEEEcC
Confidence 9999975
No 124
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=119.40 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=67.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 59 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
......++|||+||+.++++++|+++|+.|+ +|+++.++.++. +||||+|++.++|++|++.|||..|. |+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 84 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKV 84 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC--CeEE
Confidence 3446678999999999999999999999874 566666654433 49999999999999999999999995 8899
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 85 ~V~~a~ 90 (102)
T 2fc8_A 85 TLDWAK 90 (102)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999975
No 125
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=1.4e-19 Score=123.19 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=66.5
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~-vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...++|||+||+.+ +++++|+++|++||.|++|++ . ++||||+|++.++|++|++.|||..|. |+.|+|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~----~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--H----KGYAFVQYSNERHARAAVLGENGRVLA--GQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--E----TTEEEEECSSSHHHHHHHHHHTTCEET--TEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--e----CCEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEE
Confidence 34589999999999 999999999999999999998 2 239999999999999999999999994 88999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 97 a~ 98 (110)
T 1wf1_A 97 AG 98 (110)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 126
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=119.40 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=66.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeec-CCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~-~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.....++|||+||+.++++++|+++|++||.| ++..+ .+..++||||+|++.++|++|++.|||..|. |+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE--GRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET--TEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC--CeEEEE
Confidence 34567999999999999999999999999987 44444 2333459999999999999999999999995 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 86 ~~a~ 89 (101)
T 2fc9_A 86 ELQG 89 (101)
T ss_dssp EECS
T ss_pred EEcC
Confidence 9975
No 127
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=125.94 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=68.3
Q ss_pred CCCcceEEE--cCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc---CCCCCe
Q 032280 61 YDEVRTLFV--AGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP---SDSACS 135 (144)
Q Consensus 61 ~~~~~tLfV--gnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~---~~~g~~ 135 (144)
....++||| |||+++++|++|+++|++||.|.+|.+..+ ++||||+|++.++|++|++.|||..+ .+.++.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 345789999 889999999999999999999999987542 34999999999999999999999977 335888
Q ss_pred EEEEeecC
Q 032280 136 LLFPHSMA 143 (144)
Q Consensus 136 l~v~~s~~ 143 (144)
|.|+|...
T Consensus 98 l~v~~a~~ 105 (114)
T 2cq2_A 98 LYLNFVEK 105 (114)
T ss_dssp CEEEEESC
T ss_pred EEEEeccc
Confidence 99988753
No 128
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=1.3e-19 Score=138.92 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=69.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFP--GYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G--~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
..++|||+||++++||++|+++|++|| .|++|+|++++.+++ +||||+|++.++|++||+.|||..|. |+.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~--Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH--GQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT--TBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC--CEEeEE
Confidence 567999999999999999999999999 999999999865544 49999999999999999999999995 888999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 145 ~~a~ 148 (229)
T 3q2s_C 145 TPVN 148 (229)
T ss_dssp EECC
T ss_pred EECC
Confidence 9853
No 129
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=124.00 Aligned_cols=79 Identities=8% Similarity=0.096 Sum_probs=69.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGY-ESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v-~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
..+.++|||+||++++++++|+++|++||.| .+|+|++++.+ .++||||+|++.++|++|++. ||..|. |+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~--gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN--GREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET--TEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC--CeEEEE
Confidence 4556899999999999999999999999999 88999887622 344999999999999999977 999994 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+++.
T Consensus 89 ~~a~ 92 (114)
T 2cpy_A 89 HVVT 92 (114)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9864
No 130
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=3.8e-19 Score=129.38 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.+|+|..++.++. +||||+|.+.++|++||+.|||..|. |+.|+|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~ 147 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--GQTIQVD 147 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEE
Confidence 4567999999999999999999999999999999998855543 49999999999999999999999994 8899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 148 ~a~ 150 (165)
T 1rk8_A 148 WCF 150 (165)
T ss_dssp ESE
T ss_pred Eec
Confidence 974
No 131
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=123.75 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|++|++..++.++ ++||||+|.+.++|++|++. ||..|+ |+.|+|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~--g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID--GRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET--TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC--CEEEEEE
Confidence 345899999999999999999999999999999999875433 44999999999999999988 999994 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 102 ~a~ 104 (116)
T 1x4b_A 102 RAV 104 (116)
T ss_dssp CCS
T ss_pred ECC
Confidence 875
No 132
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=120.23 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=65.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcC-CccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNN-FAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~-v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG-~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||. |..+.+. . ++||||+|++.++|++|++.||| ..|+ |+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~----~g~afV~f~~~~~A~~A~~~l~g~~~~~--g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-K----SGYAFVDYPDQNWAIRAIETLSGKVELH--GKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-E----TTEEEECCSCHHHHHHHHHHHTTTCEET--TEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-C----CCEEEEEECCHHHHHHHHHHccCCeeEC--CEEEEEE
Confidence 45689999999999999999999999999 6666553 2 23999999999999999999999 8894 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 79 ~a~ 81 (93)
T 2cqh_A 79 YSV 81 (93)
T ss_dssp ECC
T ss_pred Ecc
Confidence 975
No 133
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=122.19 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCe----EEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGY----ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v----~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
...++|||+||+.++++++|+++|++||.| ..+++. .+..++||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLY--GKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCS--SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEE
Confidence 456899999999999999999999999998 455554 3344559999999999999999999999994 88999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 99 v~~a~ 103 (115)
T 2cpx_A 99 IEFGK 103 (115)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99975
No 134
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.3e-19 Score=118.84 Aligned_cols=79 Identities=20% Similarity=0.112 Sum_probs=67.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeecCC-CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYES-SHLRSSTQ-NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~-v~l~~~~~-~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||++++++++|+++|++||.|.+ |+|..+.. ..++||||+|++.++|++|++. ||..|. |+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~--gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG--HRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS--SSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC--CcEEEE
Confidence 355689999999999999999999999999987 88877632 2344999999999999999987 999995 778888
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
.++.
T Consensus 89 ~~~~ 92 (104)
T 1wg5_A 89 FKSS 92 (104)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7764
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=119.56 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++|||+||+.++++++|+++|++||.|..+ ...+..++||||+|.+.++|++|++.|||..|. |+.|+|+|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID--GRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET--TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 4567899999999999999999999999988766 233334459999999999999999999999994 89999999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 88 a~ 89 (96)
T 1fjc_A 88 TG 89 (96)
T ss_dssp CS
T ss_pred cC
Confidence 74
No 136
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-19 Score=125.99 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=67.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
..+.++|||+||++++++++|+++|++||.|.++.++.+..++ ++||||+|++.++|++||+ |||..|. |+.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG--NRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST--TSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC--CcEEEE
Confidence 3456899999999999999999999999999885555544443 3499999999999999999 9999995 888999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+++.
T Consensus 99 ~~a~ 102 (124)
T 1wel_A 99 HPIT 102 (124)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9864
No 137
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=2.5e-19 Score=127.62 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=70.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCe
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACS 135 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~---v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~ 135 (144)
...+.++|||+||++++||++|+++|++||. |.+|+|++++.+ .++||||+|++.++|++|++ |||..|. |+.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--gr~ 116 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--HRY 116 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS--SSE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC--CEE
Confidence 3456789999999999999999999999999 889999988652 23499999999999999999 9999995 889
Q ss_pred EEEEeec
Q 032280 136 LLFPHSM 142 (144)
Q Consensus 136 l~v~~s~ 142 (144)
|+|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998863
No 138
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6e-19 Score=119.35 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||+++++|+||+++|++||. ++|+|++++ +++ +||||+|++.++|++|| .+||..|. ++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~--gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQ--HRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSS--SSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeEC--CcEEEE
Confidence 355689999999999999999999999994 599999886 333 39999999999999999 58999995 788888
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
.++.
T Consensus 87 ~~~~ 90 (102)
T 1wez_A 87 FLNS 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=7.9e-19 Score=129.72 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=71.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ-NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~-~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.....++|||+||+.++++++|+++|++||.|++|.+..+.. ..++||||+|++.++|++|++.|||..|+ |+.|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~--Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD--GRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS--SSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC--CEEEEE
Confidence 345568999999999999999999999999999999988752 23449999999999999999999999995 889999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 162 ~~a~ 165 (177)
T 2f3j_A 162 QLVA 165 (177)
T ss_dssp EEES
T ss_pred EEec
Confidence 9975
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=3.5e-19 Score=133.91 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=71.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
..++|||+||+.++++++|+++|++||.|++|+|.+++.++++||||+|.+.++|++|++.|||..|+ |+.|+|+|..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~--g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN--DRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC--CEEEEEEEcC
Confidence 35689999999999999999999999999999999887666679999999999999999999999994 8999999864
No 141
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=2.7e-19 Score=123.19 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=63.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCe-----E
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACS-----L 136 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~-----l 136 (144)
....+|||+||++++++++|+++|++||.|++|.+..+ +||||+|++.++|++||+.|||..|+ |+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFR--SHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCC--CTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEEC--CcEeeeEEE
Confidence 45678999999999999999999999999999999765 49999999999999999999999995 555 5
Q ss_pred EEEee
Q 032280 137 LFPHS 141 (144)
Q Consensus 137 ~v~~s 141 (144)
+|+.+
T Consensus 87 ~v~~~ 91 (115)
T 3beg_B 87 RVKVD 91 (115)
T ss_dssp EEEEC
T ss_pred EeccC
Confidence 66543
No 142
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=3.5e-19 Score=116.83 Aligned_cols=74 Identities=15% Similarity=0.301 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++++++|+++|++| .|.+|++. ..++||||+|.+.++|++|++.|||..+. |+.|+|+|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFR--GKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEET--TEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeEC--CcEEEEEEc
Confidence 346899999999999999999999999 99999884 23349999999999999999999999994 899999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 76 ~ 76 (88)
T 1wg1_A 76 P 76 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 143
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-20 Score=122.77 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=65.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC--CCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~--~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.+ .++.+. +..++||||+|++.++|++|++ |||..|. |+.|+|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~--g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF--GNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT--TBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC--CcEEEEE
Confidence 45689999999999999999999999999877 444442 2344599999999999999998 9999995 8899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 91 ~a~ 93 (101)
T 1fj7_A 91 KPK 93 (101)
T ss_dssp CCS
T ss_pred EcC
Confidence 875
No 144
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.78 E-value=6e-18 Score=131.22 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=70.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.....++|||+||+.++++++|+++|++||.|++|++..++ ++||||+|.+.++|.+|++.|||..|+ .|+.|+|+
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v~ 278 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKIT-QNNAMKIS 278 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeC-CCCEEEEE
Confidence 34467899999999999999999999999999999998544 249999999999999999999999994 38899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 975
No 145
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.78 E-value=5.3e-19 Score=114.97 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=64.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREF----P-------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~----G-------~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
...++|||+||+.++++++|+++|++| | .|.++++..+ ++||||+|++.++|++|+ .|||..|.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 457899999999999999999999999 8 8999998754 349999999999999999 99999994
Q ss_pred CCCCeEEEEe
Q 032280 131 DSACSLLFPH 140 (144)
Q Consensus 131 ~~g~~l~v~~ 140 (144)
|+.|+|+.
T Consensus 79 --g~~l~V~r 86 (87)
T 2hzc_A 79 --GQSLKIRR 86 (87)
T ss_dssp --TEECEEEC
T ss_pred --CeEEEEeC
Confidence 88898874
No 146
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=8.2e-19 Score=115.87 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=63.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
....+||||||++++||++|+++|++||.|.+|++.++ .++||||+|++.++|+ .|+|..+..+|+.|+|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEc
Confidence 44689999999999999999999999999999999764 3459999999999988 4788877657888888876
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 82 ~ 82 (89)
T 3d2w_A 82 E 82 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 147
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=8.7e-19 Score=132.01 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=68.4
Q ss_pred CcceEEEcCCC-CCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 63 EVRTLFVAGLP-EDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 63 ~~~tLfVgnLp-~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
+.++|||+||+ +++++++|+++|++||.|.+|+++.++ ++||||+|++.++|++|++.|||..|. |+.|+|+|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMF--GQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEEC--CceEEEEEc
Confidence 46799999999 899999999999999999999997642 349999999999999999999999995 899999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 4
No 148
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.6e-19 Score=114.50 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=64.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
||||+||+.++++++|+++|++||.|.+|++..++.+ .++||||+|++.++|++|++. +|..+. |+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~--g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG--LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT--TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC--CEEEEEEEC
Confidence 6999999999999999999999999999999877543 344999999999999999974 888885 788888764
No 149
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=119.44 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
.+.++|||+||++++++++|+++|++| .|.+|+|++++.+ .++||||+|++.++|++|+ .|||..|. |+.|+|..
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~--gr~i~V~~ 89 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI--QRYVEVSP 89 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET--TEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC--CeEEEEEE
Confidence 456799999999999999999999999 8999999887543 3449999999999999999 79999995 78888865
Q ss_pred e
Q 032280 141 S 141 (144)
Q Consensus 141 s 141 (144)
+
T Consensus 90 a 90 (109)
T 2dnn_A 90 A 90 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=2.6e-18 Score=122.43 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=70.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
.++|||+|||.++++++|+++|++||.|.++++..++.++. +||||+|.+.++|++|++.|||..+. |+.|+|+|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ--TKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC--CceEEEEec
Confidence 47999999999999999999999999999999998864443 49999999999999999999999994 888999987
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 80 ~ 80 (167)
T 1fxl_A 80 R 80 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=121.16 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=68.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~---v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
..+.++|||+||++++++++|+++|++||. |.+|+|++++.+ .++||||+|.+.++|++|++ |||..|. |+.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG--QRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS--SSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC--CeEE
Confidence 356789999999999999999999999988 899999887552 34499999999999999998 9999994 7888
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|.++.
T Consensus 85 ~V~~a~ 90 (107)
T 2lmi_A 85 EVYEIN 90 (107)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 888763
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=5.4e-18 Score=121.26 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.++++..++.++. +||||+|.+.++|.+|++.|||..+.++++.|+|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4568999999999999999999999999999999988764443 49999999999999999999999997666999999
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
|+
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5e-18 Score=120.84 Aligned_cols=80 Identities=26% Similarity=0.414 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||+.++++++|+++|++||.|.++++..+..++. +||||+|.+.++|.+|++.|||..++ |+.|+|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v 161 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GRPLRI 161 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC--CcEEEE
Confidence 34567999999999999999999999999999999998755443 39999999999999999999999994 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9974
No 154
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=5.3e-19 Score=118.56 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=67.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.+|++..++ ++ ++||||+|++.++|++|++ ||..++ |+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~--g~~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFH--GKKLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeEC--CEEEEEE
Confidence 456899999999999999999999999999999999886 33 3499999999999999998 888884 8888888
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
+++
T Consensus 82 ~a~ 84 (102)
T 2xs2_A 82 PAI 84 (102)
T ss_dssp EEE
T ss_pred ECC
Confidence 765
No 155
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-20 Score=127.92 Aligned_cols=79 Identities=20% Similarity=0.242 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYES--------SHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSD 131 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~--------v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~ 131 (144)
.+.++|||+||+.++++++|+++|++||.|.+ |++..++.+ .++||||+|.+.++|++|++.|||..|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 83 (116)
Confidence 45689999999999999999999999999998 888877443 3449999999999999999999999995
Q ss_pred CCCeEEEEeec
Q 032280 132 SACSLLFPHSM 142 (144)
Q Consensus 132 ~g~~l~v~~s~ 142 (144)
|+.|+|+|+.
T Consensus 84 -g~~l~V~~a~ 93 (116)
T 2lcw_A 84 -GNPIKVSFAT 93 (116)
Confidence 8889999874
No 156
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=5.8e-19 Score=125.28 Aligned_cols=78 Identities=14% Similarity=0.278 Sum_probs=66.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEE--------EEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESS--------HLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSA 133 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v--------~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g 133 (144)
...++|||+||+.++++++|+++|++||.|.+| ++.. .+..++||||+|.+.++|.+|++.|||..|. |
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLF--G 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEET--T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeC--C
Confidence 456899999999999999999999999998763 3332 2334559999999999999999999999995 8
Q ss_pred CeEEEEeec
Q 032280 134 CSLLFPHSM 142 (144)
Q Consensus 134 ~~l~v~~s~ 142 (144)
+.|+|+|+.
T Consensus 120 ~~l~V~~a~ 128 (143)
T 3egn_A 120 KPMVVQFAR 128 (143)
T ss_dssp EECEEEECC
T ss_pred cEEEEEECC
Confidence 999999975
No 157
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=4.7e-18 Score=126.29 Aligned_cols=80 Identities=19% Similarity=0.339 Sum_probs=71.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|++|++..+..+++ +||||+|.+.++|.+|++.|||..|+ |+.|+|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~i~V~ 200 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG--GQYLRVG 200 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS--SSBCEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC--CcEEEEE
Confidence 3457999999999999999999999999999999998854443 39999999999999999999999995 8999999
Q ss_pred eecC
Q 032280 140 HSMA 143 (144)
Q Consensus 140 ~s~~ 143 (144)
|+..
T Consensus 201 ~a~~ 204 (216)
T 2qfj_A 201 KAVT 204 (216)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9753
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=2.3e-18 Score=123.25 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=69.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
.++|||+|||.++++++|+++|++||.|.+|++..++.++ ++||||+|.+.++|++|++.|||..+. |+.|+|+|+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~ 80 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR--NKRLKVSYA 80 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC--CcEEEEEec
Confidence 5899999999999999999999999999999998875443 349999999999999999999999994 889999987
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 81 ~ 81 (168)
T 1b7f_A 81 R 81 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.9e-18 Score=123.08 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=68.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
|+|||+|||.++++++|+++|++||.|.+|++..++.+ .++||||+|.+.++|++|++.|||..+. |+.|+|+|+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE--NNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC--CCeeEEEEcC
Confidence 68999999999999999999999999999999887543 3349999999999999999999999994 8889998874
No 160
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=3e-18 Score=119.31 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=65.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+|| ++++++|+++|++||.|.+|++.. .++||||+|++.++|++|++.|||..|. |+.|+|+|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~----~kg~aFV~f~~~~~A~~Ai~~lng~~~~--g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP----PRNCAFVTYEKMESADQAVAELNGTQVE--SVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET----TTTEEEEECSSHHHHHHHHHHHTTCBCS--SCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEe
Confidence 45789999996 799999999999999999999863 3349999999999999999999999994 899999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 109 ~ 109 (121)
T 2bz2_A 109 R 109 (121)
T ss_dssp C
T ss_pred C
Confidence 5
No 161
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=5.2e-18 Score=121.90 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=70.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC----CcEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeEE
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS----QPFAFAVFSDQQSALGAMYALNNFAP-SDSACSLL 137 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~----~~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l~ 137 (144)
+.++|||+|||.++++++|+++|++||.|.+|++++++.++ ++||||+|.+.++|++|++.|||..+ .+.++.++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999886553 34999999999999999999999887 44577788
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
+.++.
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 77653
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=8.1e-18 Score=119.87 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=70.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.++++..+..++ ++||||+|.+.++|.+|++.|||..+.++...|+|+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 345789999999999999999999999999999998875444 349999999999999999999999997555668888
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
|+
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=5.7e-18 Score=121.77 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.++++..+..++ ++||||+|.+.++|.+|++.|||..++ |+.|+|+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~ 169 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG--DKKLLVQ 169 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 346899999999999999999999999999999999885444 349999999999999999999999995 8999999
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
|+
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 164
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=4.4e-18 Score=141.31 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
....++|||+||+.++|+++|+++|++||.|+.|.|+.++.++ ++||||+|.+.++|.+||+.|||..|. |+.|+|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~--gr~i~V 176 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID--GRRVLV 176 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC--CEEEEE
Confidence 3456899999999999999999999999999999998875433 449999999999999999999999994 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 177 ~~a~ 180 (437)
T 3pgw_S 177 DVER 180 (437)
T ss_pred EEeC
Confidence 9975
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=113.85 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=61.4
Q ss_pred Ccce-EEEcCCCCCCCHHH----HHHHhhcCC-CeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 63 EVRT-LFVAGLPEDVKPRE----IYNLFREFP-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 63 ~~~t-LfVgnLp~~vte~~----L~~~F~~~G-~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
.+.| |||+||++++++++ |+++|++|| .|.+|. + ++|||+|.+.++|.+|++.|||..+. |+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------g-G~AfV~F~~~esA~~A~~~l~G~~l~--gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------G-CSAILRFINQDSAERAQKRMENEDVF--GNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------T-TCEEEEESSHHHHHHHHHHHTTCCSS--SSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------c-CEEEEEECCHHHHHHHHHHhcCCccC--CceE
Confidence 3566 99999999999988 558999995 999872 1 49999999999999999999999995 8889
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 77 ~v~~A~ 82 (96)
T 2diu_A 77 IVSFTP 82 (96)
T ss_dssp EEESSC
T ss_pred EEEecC
Confidence 999875
No 166
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=6.7e-18 Score=121.33 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=70.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAP-SDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l~v~~ 140 (144)
..++|||+||+.++++++|+++|++||.|+++++..+..+. ++||||+|.+.++|.+|++.|||..+ .+.++.|+|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 56899999999999999999999999999999998875432 34999999999999999999999988 43468999998
Q ss_pred e
Q 032280 141 S 141 (144)
Q Consensus 141 s 141 (144)
+
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 5
No 167
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=1.5e-17 Score=122.10 Aligned_cols=79 Identities=22% Similarity=0.374 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|.+|++..+..++ ++||||+|.+.++|++|++.|||..|+ |+.|+|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~ 189 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG--DKKLLVQ 189 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEE
Confidence 567899999999999999999999999999999999885444 349999999999999999999999994 8999999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 190 ~a~ 192 (198)
T 2yh0_A 190 RAS 192 (198)
T ss_dssp ESC
T ss_pred ECC
Confidence 975
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=9.2e-18 Score=124.71 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=68.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
..++|||+||+.++++++|+++|++||.|++|+++++..+ .++||||+|.+.++|++|++.|||..|. |+.|+|++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~ 104 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG--GRNIKVGR 104 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC---CCCEEEC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC--CeeEEEec
Confidence 4579999999999999999999999999999999887533 3459999999999999999999999994 88899887
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 105 ~~ 106 (216)
T 2qfj_A 105 PS 106 (216)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 169
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=1.5e-17 Score=129.02 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~----~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
....++|||+||+.++++++|+ ++|++||.|++|++.++ +..++||||+|.+.++|++|++.|||..|. |+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFY--DKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC-CCcceEEEEEECCHHHHHHHHHHhcCCeeC--CcEE
Confidence 3567899999999999999977 89999999999998763 334559999999999999999999999995 8999
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|+.
T Consensus 83 ~v~~a~ 88 (282)
T 3pgw_A 83 RIQYAK 88 (282)
T ss_pred EEEEec
Confidence 999874
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=1.2e-17 Score=122.31 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+.++|||+||+.++++++|+++|++||.|.+|+++.++.++ ++||||+|.+.++|++|++. +|..+. |+.|+|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~--g~~l~v~ 87 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD--GRVVEPK 87 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC--CEEeeee
Confidence 567899999999999999999999999999999999886544 34999999999999999976 898884 8889998
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
++.
T Consensus 88 ~~~ 90 (196)
T 1l3k_A 88 RAV 90 (196)
T ss_dssp ECC
T ss_pred ccc
Confidence 864
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.7e-18 Score=111.67 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=62.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++++++|+++|++||.|.+|++..+ .++||||+|++.++|++ ++|..+..+++.|+|+|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEec
Confidence 45689999999999999999999999999999998754 34499999999999974 566666446888998886
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 76 ~ 76 (88)
T 1wf0_A 76 E 76 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 172
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=1.2e-18 Score=124.58 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=66.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
....++|||+||++++||++|+++|++|| +++|+|++++.+ .++||||+|++.++|++|| .+||..|. ++.|+|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~--gR~i~V~ 118 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ--HRYIELF 118 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS--SCCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC--CEEEEEE
Confidence 34568999999999999999999999999 779999887542 2349999999999999999 89999995 7778887
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
++.
T Consensus 119 ~a~ 121 (139)
T 2hgn_A 119 LNS 121 (139)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 173
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.7e-18 Score=115.81 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=57.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-----CCCcEEEEEeCCHHHHHHHHHHh---cCCcc
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ-----NSQPFAFAVFSDQQSALGAMYAL---NNFAP 129 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~-----~~~~~aFV~F~~~~~A~~A~~~l---nG~~~ 129 (144)
...++||||||++++++++|+++|++||.|. +.++.+.. ..++||||+|++.++|++|++.| ||..+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 4568999999999999999999999999999 77776643 33459999999999999999999 66533
No 174
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=6.2e-18 Score=118.99 Aligned_cols=76 Identities=18% Similarity=0.108 Sum_probs=64.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeE--EEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYE--SSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~--~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
...++|||+||++++||++|+++|++| .|+ +|+|++++.+ .++||||+|++.++|++|++ ++|..|. |+.|+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~--gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG--HRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT--TBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC--CEEEEE
Confidence 456789999999999999999999999 677 8999887552 34499999999999999997 4778884 778888
Q ss_pred Eee
Q 032280 139 PHS 141 (144)
Q Consensus 139 ~~s 141 (144)
..+
T Consensus 116 ~~a 118 (126)
T 2hgm_A 116 FKS 118 (126)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
No 175
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.73 E-value=7.6e-18 Score=130.23 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=69.2
Q ss_pred CCCcceEEEcCCCCCC---------CHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccC-
Q 032280 61 YDEVRTLFVAGLPEDV---------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPS- 130 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~v---------te~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~- 130 (144)
....+|||||||+.++ +|++|+++|++||.|++|+++.+++ ||||+|.+.++|+.|+++|||..|.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG----~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKN----CGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGT----EEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCC----EEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 3467899999999998 7999999999999999999986543 9999999999999999999999991
Q ss_pred ---------CCCCeEEEEeec
Q 032280 131 ---------DSACSLLFPHSM 142 (144)
Q Consensus 131 ---------~~g~~l~v~~s~ 142 (144)
+.|+.|+|.|+.
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC
T ss_pred cccccccccCCCCEEEEEEcc
Confidence 148889999974
No 176
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.73 E-value=1e-17 Score=127.18 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~-~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...++|||+||+. ++++++|+++|++||.|.+|++.+++ ++||||+|.+.++|++|++.|||..|. |+.|+|+|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~--g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLH--GKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCS--SSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEE
Confidence 4578999999999 99999999999999999999998765 349999999999999999999999994 88999998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 107 a~ 108 (229)
T 2adc_A 107 SK 108 (229)
T ss_dssp CS
T ss_pred ec
Confidence 75
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=117.36 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCe----EEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGY----ESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v----~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
.+.++|||+||++++|+++|+++|++||.| .+|+|+.+..+ .++||||+|++.++|++|++. ||..|. ++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~--gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG--KRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS--SCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC--CeEE
Confidence 456899999999999999999999999975 68999887432 234999999999999999986 998884 7778
Q ss_pred EEEee
Q 032280 137 LFPHS 141 (144)
Q Consensus 137 ~v~~s 141 (144)
+|..+
T Consensus 98 ~V~~a 102 (123)
T 2dha_A 98 ELFRS 102 (123)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 77654
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.5e-17 Score=118.96 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=68.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
.++|||+||+.++++++|+++|++||.|.++++..++.+ .++||||+|.+.++|.+|++ +||..+. |+.|+|+|+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~i~V~~a 163 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK--DRKIEIKRA 163 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS--SSCEEEEEC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC--CeEEEEeec
Confidence 568999999999999999999999999999999887533 34499999999999999997 8999995 889999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 164 ~ 164 (167)
T 2cjk_A 164 E 164 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 179
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=6.1e-17 Score=118.57 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=68.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS--QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~--~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++++++|+++|++||.|++|++..+..++ ++||||+|.+.++|.+|++. +|..|+ |+.|+|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~--G~~i~v~ 178 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN--GHNCEVR 178 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET--TEECEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC--CEEEEEE
Confidence 345899999999999999999999999999999999885443 34999999999999999976 899995 8889998
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 179 ~a~ 181 (196)
T 1l3k_A 179 KAL 181 (196)
T ss_dssp ECC
T ss_pred ecC
Confidence 864
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=122.77 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=67.9
Q ss_pred cceEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 64 VRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 64 ~~tLfVgnLp~-~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
.++|||+||+. ++++++|+++|++||.|.+|++..++ ++||||+|.+.++|++|++.|||..+. |+.|+|+|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLH--GKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCS--SCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeec--CeEEEEEEec
Confidence 58999999999 99999999999999999999997654 349999999999999999999999995 8889999875
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=1.1e-16 Score=109.11 Aligned_cols=79 Identities=10% Similarity=-0.004 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCC-----CCCHHHHHHHhhcCCCeEEEEEeecCC---CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 032280 62 DEVRTLFVAGLPE-----DVKPREIYNLFREFPGYESSHLRSSTQ---NSQPFAFAVFSDQQSALGAMYALNNFAPSDSA 133 (144)
Q Consensus 62 ~~~~tLfVgnLp~-----~vte~~L~~~F~~~G~v~~v~l~~~~~---~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g 133 (144)
..+++|+|+||-. +-++++|+++|++||.|++|++..+.. ..++||||+|++.++|.+|++.|||..|+ |
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--G 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET--T
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC--C
Confidence 3568999999963 347899999999999999999988743 33559999999999999999999999995 8
Q ss_pred CeEEEEeec
Q 032280 134 CSLLFPHSM 142 (144)
Q Consensus 134 ~~l~v~~s~ 142 (144)
+.|+|+|+.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999863
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=6.7e-17 Score=116.73 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++++++|+++|++||.|..+ ...+..++||||+|.+.++|.+|++.|||..|+ |+.|+|+|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID--GRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET--TEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEec
Confidence 456899999999999999999999999988776 334445559999999999999999999999995 899999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 172 ~ 172 (175)
T 1fje_B 172 G 172 (175)
T ss_dssp S
T ss_pred C
Confidence 5
No 183
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=3.2e-17 Score=123.41 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=62.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCe--EEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGY--ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSA 133 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v--~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g 133 (144)
..++|||+||+++++|++|+++|++||.| .++++..++++.++||||+|++.++|.+|++.|||..|.+.+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 46799999999999999999999999999 899987765444469999999999999999999999995443
No 184
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.2e-17 Score=115.22 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=66.0
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc--EEEEEeCC----HHH----HHHHHH--HhcCCc
Q 032280 65 RTLFVAGL----PEDVKPREIYNLFREFPGYESSHLRSSTQNSQP--FAFAVFSD----QQS----ALGAMY--ALNNFA 128 (144)
Q Consensus 65 ~tLfVgnL----p~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~--~aFV~F~~----~~~----A~~A~~--~lnG~~ 128 (144)
..|||||| ++.++|.+|+++|++||.|.+|+++.|..++++ ||||+|.| .++ |.+|++ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999999999887766 99999996 323 889988 799999
Q ss_pred cCCCCCeEEEEee
Q 032280 129 PSDSACSLLFPHS 141 (144)
Q Consensus 129 ~~~~g~~l~v~~s 141 (144)
|+ |+.|+|++.
T Consensus 83 I~--Gr~irV~ln 93 (136)
T 2j8a_A 83 IM--GFKFEVILN 93 (136)
T ss_dssp ET--TEEEEEEEC
T ss_pred ec--CcEEEEEEC
Confidence 95 899999864
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=7e-17 Score=125.72 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=68.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 61 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
....++|||+||+.++++++|+++|++||.|.+|++..+..++++||||+|.+.++|++|+ .|||..+. |+.|+|++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~--g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVG--QNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEET--TEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeC--CcEEEEEE
Confidence 3457899999999999999999999999999999999887666679999999999999999 59999994 88898887
Q ss_pred e
Q 032280 141 S 141 (144)
Q Consensus 141 s 141 (144)
+
T Consensus 115 ~ 115 (292)
T 2ghp_A 115 L 115 (292)
T ss_dssp C
T ss_pred C
Confidence 5
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=6.3e-17 Score=115.73 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=64.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN--SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~--~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
+.++|||+|||.++++++|+++|++||.|.+|++++++.+ .++||||+|.+.++|++|++. +..++ |+.|++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~--g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILD--GKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEET--TEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccC--CeEccccc
Confidence 4689999999999999999999999999999999887533 345999999999999999985 55663 66777766
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 78 ~~ 79 (167)
T 2cjk_A 78 AI 79 (167)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.68 E-value=1.2e-16 Score=123.48 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=68.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
...++|||+||+.++|+++|+++|++||.|.+|++.+++ +||||+|.+.++|.+|++.|||..+. |+.|+|+|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k----g~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR----GFGFIRLESRTLAEIAKAELDGTILK--SRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT----TEEEEECSSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----cEEEEEECCHHHHHHHHHHcCCcEEC--CceeEeeec
Confidence 456799999999999999999999999999999996543 39999999999999999999999994 889999987
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 94 ~ 94 (261)
T 3sde_A 94 T 94 (261)
T ss_dssp C
T ss_pred c
Confidence 4
No 188
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.8e-16 Score=118.46 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=66.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEeec
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHSM 142 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s~ 142 (144)
.++|||+||+.++++++|+++|++||.|.+|++.++..+ .++||||+|++.++|++|++.++ ..| .|+.|+|.|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEEhH
Confidence 589999999999999999999999999999999887542 23499999999999999997665 477 48899998864
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=115.29 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=68.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~G-~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
...++|||+||+.++++++|+++|++|| .|.+|++..+. ++||||+|.+.++|.+|++.|||..+. .|+.|+|+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCS-SCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccC-CCCeEEEEe
Confidence 3468999999999999999999999999 99999986532 349999999999999999999999993 378899999
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 194 a~ 195 (198)
T 1qm9_A 194 SK 195 (198)
T ss_dssp EC
T ss_pred ec
Confidence 85
No 190
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=3e-16 Score=112.64 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=64.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREF----P-------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSD 131 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~----G-------~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~ 131 (144)
+.++|||+|||.++++++|+++|++| | .|.++++..+ ++||||+|.+.++|++|+ .|||..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~A~~A~-~~~~~~~~- 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAM-AFDGIIFQ- 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSHHHHHHHG-GGTTCEET-
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCHHHHHHHH-HhCCcEec-
Confidence 46899999999999999999999999 6 7788877544 339999999999999999 99999994
Q ss_pred CCCeEEEEeec
Q 032280 132 SACSLLFPHSM 142 (144)
Q Consensus 132 ~g~~l~v~~s~ 142 (144)
|+.|+|+++.
T Consensus 77 -g~~i~v~~~~ 86 (172)
T 2g4b_A 77 -GQSLKIRRPH 86 (172)
T ss_dssp -TEECEEECCS
T ss_pred -CceeeecCCc
Confidence 8889998764
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=5.5e-16 Score=117.56 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=68.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G-~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
..++|||+||+.++++++|+++|++|| .|.+|+++.+ +++||||+|++.++|.+|++.|||..+. .|+.|+|+|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~-~g~~l~v~~a 225 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSFS 225 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSS-SSCBCEEEEC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccC-CCCeEEEEEe
Confidence 468999999999999999999999999 9999998642 2349999999999999999999999993 3889999997
Q ss_pred c
Q 032280 142 M 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 226 ~ 226 (229)
T 2adc_A 226 K 226 (229)
T ss_dssp S
T ss_pred c
Confidence 5
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=104.30 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=65.1
Q ss_pred CCcceEEEcCCCCCCC-----------HHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 62 DEVRTLFVAGLPEDVK-----------PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vt-----------e~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
...++|+|.||-.... +++|+++|++||.|.+|.+ .++. .++||||+|.+.++|++|++.|||..|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH-PDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC-TTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC-CCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4578999999944332 5899999999999999966 4543 4559999999999999999999999995
Q ss_pred CCCCeEEEEeec
Q 032280 131 DSACSLLFPHSM 142 (144)
Q Consensus 131 ~~g~~l~v~~s~ 142 (144)
|+.|+|+|..
T Consensus 91 --gr~l~v~~a~ 100 (112)
T 2dit_A 91 --GRQITAQAWD 100 (112)
T ss_dssp --TEECEEEECC
T ss_pred --CcEEEEEEeC
Confidence 8999999864
No 193
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.65 E-value=5.6e-16 Score=125.31 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=65.6
Q ss_pred CCCCcceEEEcC--CCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCcc-CCCCC--
Q 032280 60 SYDEVRTLFVAG--LPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAP-SDSAC-- 134 (144)
Q Consensus 60 ~~~~~~tLfVgn--Lp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~-- 134 (144)
....+++||||| |+.++||++|+++|++||.|++|.+.. +++||||+|++.++|++|++.|||+.+ +..|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 356678999999 688999999999999999999987743 345999999999999999999999988 33344
Q ss_pred eEEEEee
Q 032280 135 SLLFPHS 141 (144)
Q Consensus 135 ~l~v~~s 141 (144)
.|.++|.
T Consensus 90 ~ly~~~~ 96 (345)
T 3tht_A 90 TLYLNFV 96 (345)
T ss_dssp ECEEEEC
T ss_pred EEEEEEe
Confidence 5777765
No 194
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=1e-15 Score=118.69 Aligned_cols=78 Identities=24% Similarity=0.263 Sum_probs=70.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEe
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ--PFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPH 140 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~--~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~ 140 (144)
..++|||+||+.++++++|+++|++||.|.+++++.+..++. +||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG--PRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEE
Confidence 357899999999999999999999999999999988754443 49999999999999999999999994 88999998
Q ss_pred ec
Q 032280 141 SM 142 (144)
Q Consensus 141 s~ 142 (144)
+.
T Consensus 172 a~ 173 (284)
T 3smz_A 172 TD 173 (284)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=6.4e-17 Score=116.84 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=65.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeec-CCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 60 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~-~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
.....++|||+||+.++++++|+++|++||.+..+.+... .+..++||||+|.+.++|++|+ .|||..+. |+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF--GNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET--TEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC--CeEEEE
Confidence 3456789999999999999999999999997755222211 2234459999999999999999 59999995 899999
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
+|+.
T Consensus 86 ~~~~ 89 (175)
T 1fje_B 86 EKPK 89 (175)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9875
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.64 E-value=5.9e-16 Score=120.03 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCCCC-CHHHHHHHhhcCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 62 DEVRTLFVAGLPEDV-KPREIYNLFREFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 62 ~~~~tLfVgnLp~~v-te~~L~~~F~~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
...++|||+||+.++ ++++|+++|+.||.|.+|++..+..+. ++||||+|.+.++|.+|++.|||..|. |+.|+|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~ 259 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG--GSHLRVS 259 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC--CeEEEEE
Confidence 456899999999995 999999999999999999998875332 449999999999999999999999994 8899999
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
|+.
T Consensus 260 ~a~ 262 (284)
T 3smz_A 260 FCA 262 (284)
T ss_dssp ECC
T ss_pred Eec
Confidence 975
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=4e-16 Score=121.44 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCC---CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEE
Q 032280 62 DEVRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQ---NSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLL 137 (144)
Q Consensus 62 ~~~~tLfVgnLp~~-vte~~L~~~F~~~G~v~~v~l~~~~~---~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~ 137 (144)
...++|||+||+.+ +++++|+++|++||.|.+|++..+.. ..++||||+|.+.++|.+|+ .|||..|. |+.|+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~--g~~i~ 284 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG--NREIS 284 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET--TEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC--CcEEE
Confidence 45689999999999 99999999999999999999987643 33459999999999999999 99999994 89999
Q ss_pred EEeec
Q 032280 138 FPHSM 142 (144)
Q Consensus 138 v~~s~ 142 (144)
|+|+.
T Consensus 285 V~~a~ 289 (292)
T 2ghp_A 285 VSLAD 289 (292)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99975
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=4.2e-16 Score=114.25 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=63.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREF----P-------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSD 131 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~----G-------~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~ 131 (144)
..++|||+||+.++++++|+++|++| | .|.++++..+ ++||||+|.+.++|++|+ .|||..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~----~g~afV~F~~~~~A~~Al-~l~g~~~~- 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAM-AFDGIIFQ- 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT----TTEEEEEESCSHHHHHHG-GGTTEEET-
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC----CCEEEEEeCCHHHHHHHH-HhcCCEEc-
Confidence 46899999999999999999999999 5 6777776433 349999999999999999 89999994
Q ss_pred CCCeEEEEeec
Q 032280 132 SACSLLFPHSM 142 (144)
Q Consensus 132 ~g~~l~v~~s~ 142 (144)
|+.|+|+++.
T Consensus 77 -g~~i~v~~~~ 86 (198)
T 2yh0_A 77 -GQSLKIRRPH 86 (198)
T ss_dssp -TEEEEEECCC
T ss_pred -CceEEEeCCC
Confidence 8899999864
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=1.8e-15 Score=102.96 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=65.3
Q ss_pred CcceEEEcCC--CCCCC--------HHHHHHHhhcCCCeEEEEEeecCCC----CCcEEEEEeCCHHHHHHHHHHhcCCc
Q 032280 63 EVRTLFVAGL--PEDVK--------PREIYNLFREFPGYESSHLRSSTQN----SQPFAFAVFSDQQSALGAMYALNNFA 128 (144)
Q Consensus 63 ~~~tLfVgnL--p~~vt--------e~~L~~~F~~~G~v~~v~l~~~~~~----~~~~aFV~F~~~~~A~~A~~~lnG~~ 128 (144)
.++.|.+.|+ +.++. +++|+++|++||.|++|++.++..+ +++||||+|++.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4688999998 33443 3689999999999999999877532 34599999999999999999999999
Q ss_pred cCCCCCeEEEEee
Q 032280 129 PSDSACSLLFPHS 141 (144)
Q Consensus 129 ~~~~g~~l~v~~s 141 (144)
|+ |+.|+++|+
T Consensus 84 f~--GR~i~v~~~ 94 (105)
T 3v4m_A 84 FA--NRVVVTKYC 94 (105)
T ss_dssp ET--TEECEEEEE
T ss_pred eC--CCEEEEEEe
Confidence 95 899999986
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=3.2e-15 Score=115.42 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=67.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCcc--CCCCCeEEEE
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAP--SDSACSLLFP 139 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~--~~~g~~l~v~ 139 (144)
..++|||+||+.++++++|+++|++||.|.+|++..+..+ .++||||+|.+.++|.+|++.|||..+ .+.++.|+|+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 3578999999999999999999999999999999988432 234999999999999999999965444 3458889998
Q ss_pred eec
Q 032280 140 HSM 142 (144)
Q Consensus 140 ~s~ 142 (144)
++.
T Consensus 175 ~~~ 177 (261)
T 3sde_A 175 PME 177 (261)
T ss_dssp ECC
T ss_pred ecc
Confidence 864
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=4.1e-16 Score=105.92 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=61.0
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCe
Q 032280 69 VAGLPEDVKPREIYNLF------------REFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALNNFAPSDSACS 135 (144)
Q Consensus 69 VgnLp~~vte~~L~~~F------------~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~ 135 (144)
++||++++++++|++.| ++||.|++|++.++..+ .++||||+|++.++|.+|++.|||..|+ |+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~--Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN--GQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET--TEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC--CEE
Confidence 67788888888887776 99999999999877543 2449999999999999999999999995 899
Q ss_pred EEEEee
Q 032280 136 LLFPHS 141 (144)
Q Consensus 136 l~v~~s 141 (144)
|+|+||
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999987
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=7.8e-15 Score=101.91 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=65.2
Q ss_pred CcceEEEcCCCC-----CCCHHHHHHHhhcCCCeEEEEEeecCCC------CCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 032280 63 EVRTLFVAGLPE-----DVKPREIYNLFREFPGYESSHLRSSTQN------SQPFAFAVFSDQQSALGAMYALNNFAPSD 131 (144)
Q Consensus 63 ~~~tLfVgnLp~-----~vte~~L~~~F~~~G~v~~v~l~~~~~~------~~~~aFV~F~~~~~A~~A~~~lnG~~~~~ 131 (144)
.+++|++.|+=. +--++||++.|++||.|.+|+|..+..+ +++|+||+|++.++|.+|++.|||+.|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 468999999842 1236899999999999999999887432 2249999999999999999999999995
Q ss_pred CCCeEEEEee
Q 032280 132 SACSLLFPHS 141 (144)
Q Consensus 132 ~g~~l~v~~s 141 (144)
|+.|+++|+
T Consensus 98 -GR~i~v~~~ 106 (118)
T 3ue2_A 98 -GRKVVAEVY 106 (118)
T ss_dssp -TEECEEEEE
T ss_pred -CcEEEEEEc
Confidence 899999986
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=93.11 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=58.3
Q ss_pred cceEEEcCCC-------CCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 64 VRTLFVAGLP-------EDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 64 ~~tLfVgnLp-------~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
.++|-|.-.. .++++++|+++|++||.|++|++.. ..++||||+|++.++|++|++.++|. .++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~~----~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVGL----VDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCBC----SSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCCC----CCCeE
Confidence 4566665433 5689999999999999999999872 34459999999999999999987663 37889
Q ss_pred EEEeec
Q 032280 137 LFPHSM 142 (144)
Q Consensus 137 ~v~~s~ 142 (144)
+|+|..
T Consensus 83 ~V~~a~ 88 (100)
T 2d9o_A 83 KISWLE 88 (100)
T ss_dssp EEECSS
T ss_pred EEEEcc
Confidence 999864
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.48 E-value=1.8e-13 Score=94.44 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=61.4
Q ss_pred cceEEEcCCCCCCC----------HHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 032280 64 VRTLFVAGLPEDVK----------PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSA 133 (144)
Q Consensus 64 ~~tLfVgnLp~~vt----------e~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g 133 (144)
+++|.+.|+=..-. ++||++.|++||.|++|.+.++ ..++||||+|++.++|.+|++.|||..|+ |
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~--~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN--SAQGNVYVKCPSIAAAIAAVNALHGRWFA--G 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT--CTTCCEEEECSSHHHHHHHHHHHTTCEET--T
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC--CCcEEEEEEECCHHHHHHHHHHhCCCEEC--C
Confidence 57788888643221 3578999999999999998554 34559999999999999999999999995 8
Q ss_pred CeEEEEee
Q 032280 134 CSLLFPHS 141 (144)
Q Consensus 134 ~~l~v~~s 141 (144)
+.|+++|+
T Consensus 83 R~i~v~~~ 90 (114)
T 3s6e_A 83 KMITAAYV 90 (114)
T ss_dssp EECEEEEE
T ss_pred EEEEEEEE
Confidence 99999986
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.4e-12 Score=89.06 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=62.4
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC-HHHHHHHHHHhc--CCccCCCCCeEE
Q 032280 62 DEVRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD-QQSALGAMYALN--NFAPSDSACSLL 137 (144)
Q Consensus 62 ~~~~tLfVgnLp~~-vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~-~~~A~~A~~~ln--G~~~~~~g~~l~ 137 (144)
.....|||+||+.+ +++++|+++|++||.|..|.+..+.. .|||+|.+ ..+|..|++.|| |..| ++..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i--~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQL--RNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCT--TSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEE--eCcEEE
Confidence 45678999999999 99999999999999999999976544 79999999 899999999996 5566 466677
Q ss_pred EEe
Q 032280 138 FPH 140 (144)
Q Consensus 138 v~~ 140 (144)
++.
T Consensus 90 ~ev 92 (121)
T 1owx_A 90 WEV 92 (121)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=6.9e-12 Score=83.19 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=56.6
Q ss_pred ceEEEcCCC----CCCCH----HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 65 RTLFVAGLP----EDVKP----REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 65 ~tLfVgnLp----~~vte----~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
.||+|.-++ .+.-+ .+|.+.|++||.|..++++.++ +||+|++.++|.+|++ |||..+. |+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~--Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELL--NRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEET--TEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeC--CeEE
Confidence 578887665 22333 5799999999999999998653 8999999999999998 9999994 9999
Q ss_pred EEEee
Q 032280 137 LFPHS 141 (144)
Q Consensus 137 ~v~~s 141 (144)
+|+..
T Consensus 79 kV~lk 83 (91)
T 2dnr_A 79 TIALK 83 (91)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.3e-11 Score=82.28 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=57.3
Q ss_pred cceEEEcCCCCC------CCH---HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCC
Q 032280 64 VRTLFVAGLPED------VKP---REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSAC 134 (144)
Q Consensus 64 ~~tLfVgnLp~~------vte---~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~ 134 (144)
..||+|.-++.+ ..+ .+|.+.|++||.|..++++.++ +||+|.|.++|.+||+ |||.++. |+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~--Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVK--GR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEET--TE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeC--Ce
Confidence 368999888632 221 4689999999999999998654 9999999999999998 9999994 99
Q ss_pred eEEEEe
Q 032280 135 SLLFPH 140 (144)
Q Consensus 135 ~l~v~~ 140 (144)
.|+|.+
T Consensus 86 ~L~V~~ 91 (95)
T 1ufw_A 86 AVKISG 91 (95)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999976
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.11 E-value=2.5e-10 Score=85.79 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=55.3
Q ss_pred CCHHHHHHHhhcCCCeEEEEEeecCCC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEEee
Q 032280 76 VKPREIYNLFREFPGYESSHLRSSTQN------SQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFPHS 141 (144)
Q Consensus 76 vte~~L~~~F~~~G~v~~v~l~~~~~~------~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~~s 141 (144)
-.+++|++.|++||.|.++.+.++..+ .++++||+|.+.++|.+|++.|||+.|. |+.|+++|+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~--gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA--GRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS--SSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC--CeEEEEEEc
Confidence 456789999999999999999865332 2349999999999999999999999995 899999885
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.1e-08 Score=69.85 Aligned_cols=72 Identities=18% Similarity=0.127 Sum_probs=65.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcC-----CCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREF-----PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~-----G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
+..|+|-+-|||..+++..|+.+.+.+ |.++.+.|+.|-+ =|+|+|.|..+|.+|.-+|||.+|+ |++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~--gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQ--GKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEET--TEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeec--CeEE
Confidence 456899999999999999999999999 9999999987644 6999999999999999999999995 8999
Q ss_pred EEE
Q 032280 137 LFP 139 (144)
Q Consensus 137 ~v~ 139 (144)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 874
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.40 E-value=4.7e-06 Score=55.06 Aligned_cols=77 Identities=9% Similarity=0.157 Sum_probs=60.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC----cEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeEE--
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ----PFAFAVFSDQQSALGAMYALNNFAP-SDSACSLL-- 137 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~----~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l~-- 137 (144)
.+|-|++||.++||+++.+.++....+.-...+..+.+.+ +-|||.|.+.+++..-.+.++|..| |++|..-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4688999999999999999999998876666654432222 2899999999999999999999999 66665443
Q ss_pred EEee
Q 032280 138 FPHS 141 (144)
Q Consensus 138 v~~s 141 (144)
||++
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 4543
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=2.5e-06 Score=57.62 Aligned_cols=73 Identities=18% Similarity=0.101 Sum_probs=60.9
Q ss_pred cceEEEcCCCCCC-CH----HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEE
Q 032280 64 VRTLFVAGLPEDV-KP----REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLF 138 (144)
Q Consensus 64 ~~tLfVgnLp~~v-te----~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v 138 (144)
-.+|+|.||+.++ +. +.++++|++|+.+.+.....+-+ -..|.|.+.++|.+|...|+|..|. |+.+|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~--g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFL--GKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEET--TEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceec--CceeEE
Confidence 4689999998876 22 46799999999999888765533 5799999999999999999999994 778988
Q ss_pred Eeec
Q 032280 139 PHSM 142 (144)
Q Consensus 139 ~~s~ 142 (144)
-|..
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7753
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.86 E-value=0.0001 Score=49.12 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=45.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
.+.++| +.|..+.-.||.++|+.||.| .|+-+.|. -|||.|.+.+.|..|++.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 355667 999999999999999999964 45555433 69999999999999998774
No 213
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.74 E-value=9.1e-05 Score=49.33 Aligned_cols=73 Identities=10% Similarity=0.158 Sum_probs=52.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC----cEEEEEeCCHHHHHHHHHHhcCCcc-CCCCCeE
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ----PFAFAVFSDQQSALGAMYALNNFAP-SDSACSL 136 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~----~~aFV~F~~~~~A~~A~~~lnG~~~-~~~g~~l 136 (144)
+-+|-|++||..+||+++.+.++..-++.-...+..+.+.+ +.|||.|.+.++...-.+.++|..| |.+|..-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 45688999999999999888777665532222211111111 2799999999999999999999999 6666644
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=0.00033 Score=47.07 Aligned_cols=56 Identities=16% Similarity=0.030 Sum_probs=46.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhcC-----CCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHH
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLFREF-----PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 123 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~~-----G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ 123 (144)
.-.++|.|.|||.+++++.|+-+|++- |.|++++... .-|+|+|.|.+.|++.++.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC
Confidence 345789999999999999999999872 4577776632 2699999999999998865
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.00049 Score=47.41 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=50.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPS 130 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~ 130 (144)
..+.|-|-+.+... -+.+.+.|++||.|++... ..+..+-.|.|++..+|++|+ ..||+.|.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~----~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~ 84 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM----SNTGNWMHIRYQSKLQARKAL-SKDGRIFG 84 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE----CSSSSEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc----CCCCCeEEEEeCCHHHHHHHH-HhCCeEec
Confidence 45678888988875 4567789999999998776 223349999999999999999 56999994
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.51 E-value=0.00019 Score=47.94 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=44.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
+.++| ++|..+.-.||.++|+.||+ ..|+-+.|. -|||.|.+.+.|..|++.++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 34666 99999999999999999994 445555433 69999999999999998774
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.29 E-value=0.00011 Score=61.37 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=40.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHH
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 121 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~ 121 (144)
.|+|||. .+.++++.+|.+.|++||.|.++.. ++. ++.|+.|||.+.+++.+++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~--~~~-~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFF--YES-FGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEE--ECS-SSEEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEE--Ecc-CCeEEEEEeCCHHHHHHHH
Confidence 4899998 7999999999999999999999876 332 2349999999999988664
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.01 E-value=0.00049 Score=48.30 Aligned_cols=35 Identities=11% Similarity=-0.087 Sum_probs=29.9
Q ss_pred EEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCC
Q 032280 93 SSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNF 127 (144)
Q Consensus 93 ~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~ 127 (144)
+++|++++...++||||+|.+.++|++|++.++|.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhccc
Confidence 56777787767779999999999999999998864
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.64 E-value=0.0012 Score=45.98 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=36.1
Q ss_pred EEEeecCCCCCcEEEEEeCCHHHHHHHHHHh-cCCccCCCCCeEEEEee
Q 032280 94 SHLRSSTQNSQPFAFAVFSDQQSALGAMYAL-NNFAPSDSACSLLFPHS 141 (144)
Q Consensus 94 v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~l-nG~~~~~~g~~l~v~~s 141 (144)
..|..+...-+++++|+|.+.++|++|++.| ||..++ | .++++++
T Consensus 3 ~al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~--G-~~~~~~a 48 (150)
T 2i2y_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVD--G-EWTYDDA 48 (150)
T ss_dssp EEEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCC--C-EEEEETT
T ss_pred eEeeeccccccccceeeecCHHHHHHHHHHHhcCCCCC--C-ceecccc
Confidence 3455555555559999999999999999999 999996 5 7888765
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.85 E-value=0.0067 Score=42.36 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=47.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEee-----------cCC----CCCcEEEEEeCCHHHHHHHHHHhcCCc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYES-SHLRS-----------STQ----NSQPFAFAVFSDQQSALGAMYALNNFA 128 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~-v~l~~-----------~~~----~~~~~aFV~F~~~~~A~~A~~~lnG~~ 128 (144)
..|-|=+.+.+... .+-+.|++||.|++ ..... .++ ++..+-.|+|++..+|.+|| ..||+.
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 34566677776655 46689999999866 21110 000 12338899999999999999 679999
Q ss_pred cCCCCCeEEE
Q 032280 129 PSDSACSLLF 138 (144)
Q Consensus 129 ~~~~g~~l~v 138 (144)
|. |..|-|
T Consensus 86 i~--G~mIGV 93 (132)
T 3p3d_A 86 FN--GVLLGV 93 (132)
T ss_dssp ET--TEECEE
T ss_pred eC--cEEEEE
Confidence 95 544444
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.02 E-value=0.09 Score=44.13 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=44.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
...++|+ ++..+...+|+++|+.||.+ +|+.+ |.. .|||.|.+.+.|..++++++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDT----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSS----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCC----eEEEEECCHHHHHHHHHHHH
Confidence 3567777 88889999999999999964 44433 222 79999999999999999985
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.90 E-value=0.64 Score=28.39 Aligned_cols=67 Identities=7% Similarity=0.150 Sum_probs=40.8
Q ss_pred eEEEc-CCCCCCCHHHHHHHhhcCCCe-----EEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 66 TLFVA-GLPEDVKPREIYNLFREFPGY-----ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 66 tLfVg-nLp~~vte~~L~~~F~~~G~v-----~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
||||+ +--..++..+|..++.+-+.+ -.+++. .. |.||+-.. +.+..+++.|++..+. |+.++++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~----~s~v~v~~-~~~~~~~~~l~~~~i~--g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DN----ASYVEILN-GKGPHVLKVMKNTTVK--GKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SS----CEEEEECT-TCHHHHHHHHTTCCC-----CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CC----cEEEEECH-HHHHHHHHHhccccCc--CceEEEE
Confidence 57773 334457777888887766654 444542 12 88999775 4678899999999884 7777776
Q ss_pred ee
Q 032280 140 HS 141 (144)
Q Consensus 140 ~s 141 (144)
..
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.23 E-value=0.39 Score=31.57 Aligned_cols=19 Identities=5% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCcceEEEcCCCCCCCHHH
Q 032280 62 DEVRTLFVAGLPEDVKPRE 80 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~ 80 (144)
.+.++|||+||+.++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3446799999999999864
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=68.93 E-value=12 Score=21.69 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=42.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHh
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 124 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~l 124 (144)
..++.|.++.=.--...+++.+++ .+|.++.+-...+ -+.|+|.+.++..++++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~----~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEA----VVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEE----EEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCC----EEEEEECCHHHHHHHHHHc
Confidence 357889999888888999999999 9998888743222 5678887666666777653
No 225
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=64.37 E-value=15 Score=20.59 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=38.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC---HHHHHHHHH
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD---QQSALGAMY 122 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~---~~~A~~A~~ 122 (144)
.++.|.|+.-.-....+++.+++..+|.++.+-...+ -+.|+|.+ .++..++++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE----QAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT----EEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC----EEEEEECCCCCHHHHHHHHH
Confidence 4678888887777788999999999999888854333 56788754 334444444
No 226
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=58.41 E-value=4.7 Score=20.77 Aligned_cols=19 Identities=42% Similarity=0.733 Sum_probs=13.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHh
Q 032280 62 DEVRTLFVAGLPEDVKPREIYNLF 85 (144)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F 85 (144)
.+.||||||+-| ++|+.+=
T Consensus 3 gqvrtiwvggtp-----eelkklk 21 (36)
T 2ki0_A 3 GQVRTIWVGGTP-----EELKKLK 21 (36)
T ss_dssp CSCCCCCBCCCH-----HHHHHHH
T ss_pred ceeEEEEecCCH-----HHHHHHH
Confidence 467999999755 4565553
No 227
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=57.49 E-value=16 Score=24.96 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=30.7
Q ss_pred EcCCCCCCCHHHHHHHhh-cCC--CeEEEEEeecC------------CCCCcEEEEEeCC
Q 032280 69 VAGLPEDVKPREIYNLFR-EFP--GYESSHLRSST------------QNSQPFAFAVFSD 113 (144)
Q Consensus 69 VgnLp~~vte~~L~~~F~-~~G--~v~~v~l~~~~------------~~~~~~aFV~F~~ 113 (144)
|-++...++++++++++. ..+ .|.++++-..+ .++.+|-|+.|+|
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 566888899999999995 444 57777774422 2233377777775
No 228
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=56.03 E-value=22 Score=25.57 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=28.4
Q ss_pred CCHHHHHHHh--hcCCCeEEEEEeecCCCCCcEEEEEeCCH
Q 032280 76 VKPREIYNLF--REFPGYESSHLRSSTQNSQPFAFAVFSDQ 114 (144)
Q Consensus 76 vte~~L~~~F--~~~G~v~~v~l~~~~~~~~~~aFV~F~~~ 114 (144)
.+..+|++.| +.|..+. |+...+..+..+++.|+|.+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSS
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCC
Confidence 4557899977 9999865 555566666666999999873
No 229
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=55.05 E-value=37 Score=21.42 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=42.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHhcCCc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYALNNFA 128 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~lnG~~ 128 (144)
.+|.|.++.-.-....|++.+++..+|.++.+-...+ -+.|+|.+ .+...++++.+ |+.
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~----~~~V~~~~~~~~~~~i~~~i~~~-Gy~ 72 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATG----RLTVTYDPKQVSEITIQERIAAL-GYT 72 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTT----EEEEEECTTTCSHHHHHHHHHTT-TCC
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCC----EEEEEECCCCCCHHHHHHHHHHc-CCe
Confidence 4678899888888888999999999998888754333 67888874 34445556544 443
No 230
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=59.14 E-value=2.7 Score=27.82 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=35.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCc---EEEEEeCCHHHHHHHHHHhcC
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQP---FAFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~---~aFV~F~~~~~A~~A~~~lnG 126 (144)
..||=+... .++++|+++.++.+ +..+.+......++. .-+=.|.+.++|.+|++.|-.
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 345544333 45667777777776 444555433333333 223378999999999988753
No 231
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=53.00 E-value=29 Score=19.64 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=41.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeC----CHHHHHHHHHHh
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFS----DQQSALGAMYAL 124 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~----~~~~A~~A~~~l 124 (144)
.++.|.|+.=.--...+++.+++..+|.++.+-...+ -+.|+|. +.++..++++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQN----RADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGT----EEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCC----EEEEEECCCCCCHHHHHHHHHHC
Confidence 4677888877777788999999999998888754333 6788885 455666666543
No 232
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=49.68 E-value=37 Score=22.04 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=23.3
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD 113 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~ 113 (144)
||.+.++..| |.+..|-++..++.-|++++..|
T Consensus 28 Ev~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 28 ELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 4667777777 56666665554444599999998
No 233
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=49.02 E-value=13 Score=19.73 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHhhcCC
Q 032280 73 PEDVKPREIYNLFREFP 89 (144)
Q Consensus 73 p~~vte~~L~~~F~~~G 89 (144)
-.+++.++|+.+|.+..
T Consensus 19 ~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp SSCCCHHHHHHHHHTCC
T ss_pred cCcCCHHHHHHHHHHcc
Confidence 34789999999998763
No 234
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=47.44 E-value=19 Score=30.78 Aligned_cols=56 Identities=7% Similarity=0.148 Sum_probs=40.3
Q ss_pred cCCCCCCCHHHHHHHhh----cCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhc
Q 032280 70 AGLPEDVKPREIYNLFR----EFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 70 gnLp~~vte~~L~~~F~----~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~ln 125 (144)
+....+.+--||.++|. .+|-|.++.|+...... ..++++.|.|.++|.+++..+-
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 34555666668899984 67788888886643322 2278999999999998887663
No 235
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=46.82 E-value=34 Score=18.60 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=37.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCH---HHHHHHHHHh
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQ---QSALGAMYAL 124 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~---~~A~~A~~~l 124 (144)
.++.|.++.-.-....+++.+++..+|.++.+-...+ -+.|+|.+. +....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALE----QAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTT----EEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCC----EEEEEECCCCCHHHHHHHHHHc
Confidence 3577888876556677999999999998888754332 677888743 3334445443
No 236
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=46.71 E-value=13 Score=28.19 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=40.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCe--EEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCCeE
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGY--ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNFAPSDSACSL 136 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v--~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l 136 (144)
.|-|-+ ....+++.|-+++.+...+ .-+.+.+++ +....|| +|...|. |+..++|...++.+..|
T Consensus 26 kv~I~~-g~ky~k~~ll~~i~~~~~~~f~p~~~~~~~--~~~~ffV--~~~~~A~-~l~~~~g~i~~~~~~ki 92 (267)
T 3rw6_A 26 KITIPY-GRKYDKAWLLSMIQSKCSVPFTPIEFHYEN--TRAQFFV--EDASTAS-ALKAVNYKILDRENRRI 92 (267)
T ss_dssp EEEETT-GGGSCHHHHHHHHHHTCSSCCCCEEEEEET--TEEEEEE--SCHHHHH-HHHHTTSSCBCTTSCBC
T ss_pred EEEecC-ccccCHHHHHHHHHHhCCCCcEeEEEEEeC--CEEEEEe--CChHHHH-HHHhcCcEEECCCCCEE
Confidence 333766 6678999998888766543 333333322 2235666 5666666 57799999986554433
No 237
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=44.48 E-value=45 Score=19.95 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=40.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHh
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYAL 124 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~l 124 (144)
.+|.|.++.-.-....+++.+++..+|.++.+-...+ -+.|+|.+ .++..++++.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~----~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENR----SAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTT----EEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCC----EEEEEECCCCCCHHHHHHHHHhc
Confidence 4677888766556677999999999999888754333 67888863 34556667666
No 238
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=42.80 E-value=8.4 Score=26.11 Aligned_cols=64 Identities=9% Similarity=-0.004 Sum_probs=39.4
Q ss_pred CCHHHHHHHhhcCCCeEEEEEeecCCCCCc-EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 76 VKPREIYNLFREFPGYESSHLRSSTQNSQP-FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 76 vte~~L~~~F~~~G~v~~v~l~~~~~~~~~-~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
..+.+|+++|...+......++.+..-++. --.+.=...++|..++-..+|..+...|.+|+|-
T Consensus 38 f~da~i~~vl~~la~~tg~NiV~d~~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~~~gnvi~I~ 102 (128)
T 4ar0_A 38 FQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIA 102 (128)
T ss_dssp EEEEEHHHHHHHHHHTTCCEEEECTTCCCEEEEEEEEEEHHHHHHHHHHHHTEEEEEETTEEEEE
T ss_pred EeCCCHHHHHHHHHHHHCCcEEEcCCCCceeeEeecCCCHHHHHHHHHHHcCceEEEECCEEEEE
Confidence 444456777766655555566666544333 2222223467888888888998774457777774
No 239
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=42.05 E-value=26 Score=26.54 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=26.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEee
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS 98 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~ 98 (144)
..+.|+|||++++..-|.++++. +.+.+..+..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 45689999999999999999988 6666665543
No 240
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=40.73 E-value=42 Score=17.88 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=37.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC---HHHHHHHHHHh
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD---QQSALGAMYAL 124 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~---~~~A~~A~~~l 124 (144)
++.|.|+.-.-....+++.+++..++.++.+-...+ -..|+|.. .+...++++.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKK----SVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTT----EEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCC----EEEEEECCCCCHHHHHHHHHHc
Confidence 466777776666678999999998898888744322 56778763 34445555443
No 241
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=40.02 E-value=91 Score=21.56 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=29.1
Q ss_pred HHHHhhcCCCeEEEEEeecC---C--C--------CCc----EEEEEeCCHHHHHHHHH
Q 032280 81 IYNLFREFPGYESSHLRSST---Q--N--------SQP----FAFAVFSDQQSALGAMY 122 (144)
Q Consensus 81 L~~~F~~~G~v~~v~l~~~~---~--~--------~~~----~aFV~F~~~~~A~~A~~ 122 (144)
-.++|..||.+.-+...-+. + + +-. |++|+|.|.+..+++.+
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 44689999998666553331 1 0 111 99999999999988873
No 242
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=38.70 E-value=20 Score=29.55 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=28.3
Q ss_pred HHHHHh--hcCCCeEEEEEeecCCCCC-cEEEEEeCCHHHHHHHH
Q 032280 80 EIYNLF--REFPGYESSHLRSSTQNSQ-PFAFAVFSDQQSALGAM 121 (144)
Q Consensus 80 ~L~~~F--~~~G~v~~v~l~~~~~~~~-~~aFV~F~~~~~A~~A~ 121 (144)
+|+.+| +.+|-|.++.+........ ..+++.|.+.+++.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456777 3688899998866543222 25788899877766544
No 243
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=37.39 E-value=51 Score=17.92 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=37.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHh
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYAL 124 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~l 124 (144)
.+|.|.++.-.-....+++.+.+..+|.++.+-...+ -..|+|.. .+....+++.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEG----TVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTT----EEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCC----EEEEEECCCCCCHHHHHHHHHHc
Confidence 3578888876656677899999998898888744322 57778763 34444555443
No 244
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=37.30 E-value=51 Score=17.86 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=36.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCH---HHHHHHHHH
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQ---QSALGAMYA 123 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~---~~A~~A~~~ 123 (144)
++.|.++.-.-....+++.+++..+|.++.+-...+ ...|+|... +....+++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKG----TAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTT----EEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCC----EEEEEECCCCCHHHHHHHHHH
Confidence 467788876666778999999999998888754332 677787643 334445443
No 245
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=36.60 E-value=33 Score=28.09 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHhh----cCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhc
Q 032280 72 LPEDVKPREIYNLFR----EFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 72 Lp~~vte~~L~~~F~----~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~ln 125 (144)
+..+.+.-+|+.+|. .+|-|.++.+....... ...+++.|.+.++|.+++..+.
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHH
Confidence 444444456777775 45667888886543322 2268899999999988887763
No 246
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=36.32 E-value=24 Score=29.80 Aligned_cols=54 Identities=6% Similarity=-0.012 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHhh----cCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHHHhc
Q 032280 72 LPEDVKPREIYNLFR----EFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 72 Lp~~vte~~L~~~F~----~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~~ln 125 (144)
+..+.+.-+|+.+|. .+|-|.++.++...... ...+++.|.+.++|.+|+..+.
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 333444446777765 45678888886654322 2278899999999988887664
No 247
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=35.80 E-value=85 Score=20.03 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=40.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHhcCC
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYALNNF 127 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~lnG~ 127 (144)
.+|.|.++.=......+++.+++..+|.++.+-...+ .+.|+|.. .++..++++.+ |+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~-Gy 143 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALATS----KALVKFDPEIIGPRDIIKIIEEI-GF 143 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTT----EEEEECCTTTSCHHHHHHHHHHH-TC
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCC----EEEEEECCCCCCHHHHHHHHHhC-CC
Confidence 4677888876666677889999888888888744333 67888863 45556666655 44
No 248
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=35.33 E-value=6.5 Score=27.36 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=16.4
Q ss_pred HHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeC
Q 032280 78 PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFS 112 (144)
Q Consensus 78 e~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~ 112 (144)
++|+.++|...|.|+.... . ++||||+-+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~----~--kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNV----R--MGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEET----T--TTEEEEEEE
T ss_pred CCcccccccceeEEEEEEC----C--CCeeEEeeC
Confidence 3567788888887765432 1 229999976
No 249
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=35.10 E-value=25 Score=17.06 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=12.0
Q ss_pred CCHHHHHHHhhcCCC
Q 032280 76 VKPREIYNLFREFPG 90 (144)
Q Consensus 76 vte~~L~~~F~~~G~ 90 (144)
-+|.+|+++.++|.+
T Consensus 13 rnekelrdfiekfkg 27 (28)
T 1fme_A 13 RNEKELRDFIEKFKG 27 (28)
T ss_dssp CCHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHhcC
Confidence 478999999988853
No 250
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=33.84 E-value=14 Score=28.11 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=26.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEee
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS 98 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~ 98 (144)
..+.|+|||++++..-|.++++....+..+.+..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3567999999999999999998766666665543
No 251
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=33.01 E-value=73 Score=18.39 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=42.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHhcCC
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYALNNF 127 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~lnG~ 127 (144)
..+|.|.++.-.-....+++.+.+..+|.++.+-...+ -+.|+|.. .+...++++.+ |+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~-Gy 72 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQ----EATIVYQPHLISVEEMKKQIEAM-GF 72 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTT----EEEEEECTTTCCHHHHHHHHHHT-TC
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCC----EEEEEECCCCCCHHHHHHHHHHc-CC
Confidence 34688999988777788999999999999888743322 67888863 44555666554 44
No 252
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=32.76 E-value=62 Score=17.53 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=37.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHh
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYAL 124 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~l 124 (144)
.++.|.++.-.-....+++.+++..+|.++.+-...+ -+.|.|.. .+...++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANS----NGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTT----EEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCC----EEEEEECCCcCCHHHHHHHHHHC
Confidence 3577878765555677889999998888887744332 67788864 34445556554
No 253
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=32.57 E-value=60 Score=23.16 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHH
Q 032280 79 REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 123 (144)
Q Consensus 79 ~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ 123 (144)
++|+.+|+.|...+ .++.+.+-.|.+.+.|.+.++.
T Consensus 133 ~~i~~fF~~YK~le---------~gK~v~v~gw~~~~~A~~~I~~ 168 (173)
T 3d53_A 133 KRIVHFFEHYKDLE---------KGKWVKVTGWGDKVKAETLIKE 168 (173)
T ss_dssp HHHHHHHHHTTTTS---------TTCCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc---------CCCcEEEccCcCHHHHHHHHHH
Confidence 57888999996542 1233778889999999888765
No 254
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=32.55 E-value=60 Score=17.29 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=33.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD 113 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~ 113 (144)
++.|.|+.-.-....+++.+++..+|.++.+-...+ -..|+|..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~ 46 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKE----KAVVKFDE 46 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTT----EEEEEECT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCC----EEEEEECC
Confidence 577888877777788999999998998888744322 67788864
No 255
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=32.08 E-value=24 Score=27.92 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=19.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFRE 87 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~ 87 (144)
..+.|||||++++..-|..+++.
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999988888874
No 256
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=31.12 E-value=1.2e+02 Score=20.21 Aligned_cols=36 Identities=11% Similarity=-0.102 Sum_probs=19.2
Q ss_pred CCCeEEEEEeecCCCCCcEEEEE-eCCHHHHHHHHHHhc
Q 032280 88 FPGYESSHLRSSTQNSQPFAFAV-FSDQQSALGAMYALN 125 (144)
Q Consensus 88 ~G~v~~v~l~~~~~~~~~~aFV~-F~~~~~A~~A~~~ln 125 (144)
+=.|.+|++..|- +....||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl--~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF--SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS--CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC--cEEEEEEEecCChhhHHHHHHHHH
Confidence 4567888874432 22245555 445554444555454
No 257
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=30.44 E-value=1.1e+02 Score=19.64 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=40.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeC----CHHHHHHHHHHhcCC
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFS----DQQSALGAMYALNNF 127 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~----~~~~A~~A~~~lnG~ 127 (144)
+|.|.++.-......+++.+++..+|.++.+-...+ -+.|+|. +.++..++++.+ |+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~-Gy 137 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALE----TVTVEYNPKEASVSDLKEAVDKL-GY 137 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTT----EEEEEECTTTCCHHHHHHHHHHH-TC
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCC----EEEEEECCCCCCHHHHHHHHHHc-CC
Confidence 577888887777788888888888888777643322 6778886 345556666665 44
No 258
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=29.89 E-value=32 Score=21.48 Aligned_cols=20 Identities=5% Similarity=0.282 Sum_probs=17.7
Q ss_pred cCCCCCCCHHHHHHHhhcCC
Q 032280 70 AGLPEDVKPREIYNLFREFP 89 (144)
Q Consensus 70 gnLp~~vte~~L~~~F~~~G 89 (144)
|.|...+||++|++++++..
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 78899999999999998764
No 259
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=29.64 E-value=71 Score=17.25 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=39.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHh
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYAL 124 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~l 124 (144)
.++.|.++.-.-....+++.+++..+|.++.+-...+ -..|+|.. .+....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETR----QAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTT----EEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCC----EEEEEECCCCCCHHHHHHHHHhc
Confidence 3577888877777788999999999998888744332 67788863 34445555544
No 260
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=29.26 E-value=5.1 Score=32.65 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=12.5
Q ss_pred HHHHHhhcCCCeEEE
Q 032280 80 EIYNLFREFPGYESS 94 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v 94 (144)
.|..||..+|.|..|
T Consensus 8 ~L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 8 NLLALFAPRDPIPYL 22 (437)
T ss_pred cHHHhcCCCCCCcCC
Confidence 378899999998877
No 261
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=29.16 E-value=31 Score=16.39 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=9.6
Q ss_pred HHHHHHHhhcCC
Q 032280 78 PREIYNLFREFP 89 (144)
Q Consensus 78 e~~L~~~F~~~G 89 (144)
-.+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467888999887
No 262
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=29.15 E-value=43 Score=24.86 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=23.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHL 96 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l 96 (144)
.+.|+|||+.++...|..+++....+..+.+
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 5789999999999988888775444544443
No 263
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=28.61 E-value=15 Score=27.45 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=25.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEee
Q 032280 67 LFVAGLPEDVKPREIYNLFREFPGYESSHLRS 98 (144)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~ 98 (144)
..|+|||++++...|..+++..+.+....++.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 37899999999999999998776666665543
No 264
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=28.48 E-value=81 Score=17.54 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=39.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHhcCC
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYALNNF 127 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~lnG~ 127 (144)
.+|.|.++.-.-....+++.+.+..+|.++.+-... + -+.|+|.. .+....+++.+ |+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~--~--~~~v~~~~~~~~~~~i~~~i~~~-Gy 66 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMA--G--KAEVRYNPAVIQPPMIAEFIREL-GF 66 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTT--T--BEEEEECTTTSCHHHHHHHHHHH-TS
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecC--C--EEEEEECCCCCCHHHHHHHHHHc-CC
Confidence 357788887777778899999999888877663222 2 57778863 34455666554 44
No 265
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=28.06 E-value=40 Score=23.28 Aligned_cols=63 Identities=6% Similarity=-0.001 Sum_probs=37.6
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecCCCCCc-EEEEEeCCHHHHHHHHHHhcCCccCCCCCeEEEE
Q 032280 77 KPREIYNLFREFPGYESSHLRSSTQNSQP-FAFAVFSDQQSALGAMYALNNFAPSDSACSLLFP 139 (144)
Q Consensus 77 te~~L~~~F~~~G~v~~v~l~~~~~~~~~-~aFV~F~~~~~A~~A~~~lnG~~~~~~g~~l~v~ 139 (144)
.+.+|+++|..++....+.++.+..-.+. -..+.=.+..++...+..++|..+-..|..++|-
T Consensus 13 ~~~~i~~vl~~la~~~g~nivi~~~V~G~vTl~l~~v~~~~~l~~vl~~~gl~~~~~g~vl~V~ 76 (175)
T 2y3m_A 13 KQAPLVPTLQQLALAHNTNLIIDDELQGTVSLQLENVDLDQLFRSVAKIKQLDLWQENGIYYFT 76 (175)
T ss_dssp EECCHHHHHHHSCCCTTCEEEEC-----CCEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHhCCCEEeCCCCceEEEEEEcCCCHHHHHHHHHHHCCceEEEECCEEEEE
Confidence 34457888888888777777666433222 2333335577777777788888763345566553
No 266
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=27.91 E-value=80 Score=22.46 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHh
Q 032280 79 REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 124 (144)
Q Consensus 79 ~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~l 124 (144)
++|+.+|+.|...+ .++.+.+-.|.+.+.|.+.++.-
T Consensus 129 ~~i~~fF~~YK~le---------~gK~v~~~gw~~~~~A~~~I~~~ 165 (173)
T 1qez_A 129 NKIVHFFEHYKELE---------PGKYVKISGWGSATEAKNRIQLA 165 (173)
T ss_dssp HHHHHHHHHTTTTS---------TTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc---------CCCceEEccccCHHHHHHHHHHH
Confidence 56778899996542 12337778899999998877543
No 267
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=27.49 E-value=86 Score=17.48 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=41.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHh
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYAL 124 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~l 124 (144)
..++.|.++.-.-....+++.+++..+|.++.+-...+ -+.|+|.. .+...++++.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEK----NATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGT----EEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCC----EEEEEECCCCCCHHHHHHHHHHC
Confidence 34688999988888889999999998888887754333 67788864 34455666554
No 268
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=26.64 E-value=84 Score=17.09 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=35.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC
Q 032280 64 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD 113 (144)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~ 113 (144)
..++.|.++.-.-....+++.+.+..+|.++.+-...+ ...|.|..
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~ 50 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATN----KAHIKYDP 50 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTT----EEEEEECT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCC----EEEEEECC
Confidence 34688999988777888999999999998888744332 67788864
No 269
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=26.19 E-value=1.9e+02 Score=21.81 Aligned_cols=43 Identities=16% Similarity=0.048 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcC
Q 032280 79 REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 79 ~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG 126 (144)
+++++...+.|.+ .+.+ . + .++..|..|.+.+.|+++.+.|..
T Consensus 238 ~~i~~~~~~~Ga~-ga~m--S-G-sGptvfal~~~~~~a~~~~~~l~~ 280 (306)
T 3pyf_A 238 ARALRAGVEAGAL-AGIV--S-G-SGPTCAFLCTSASSAIDVGAQLSG 280 (306)
T ss_dssp HHHHHHHHHTTCS-EEEE--C-T-TSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-EEEE--c-C-cchhheEEeCCHHHHHHHHHHHHh
Confidence 3455556677753 2333 1 2 224788889998888888887763
No 270
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=25.89 E-value=39 Score=24.96 Aligned_cols=30 Identities=20% Similarity=0.062 Sum_probs=22.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEE
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESS 94 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v 94 (144)
..+.|+|||++++..-|..+++....+...
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 347799999999999999888765434333
No 271
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=25.54 E-value=1.5e+02 Score=22.65 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=25.8
Q ss_pred HHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcCC
Q 032280 81 IYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNNF 127 (144)
Q Consensus 81 L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG~ 127 (144)
|.+...++|.+ .++ ...++.++.|..+.+.+.+++..+.|...
T Consensus 279 l~~~a~~~Ga~--ak~--sGaGgGg~vial~~~~~~~~~~~~~l~~~ 321 (337)
T 2pg9_A 279 LKEASQDLQAV--AKS--SGAGGGDCGIALSFDAQSTKTLKNRWADL 321 (337)
T ss_dssp HHHTTTTSSEE--EEE--CTTCSSSEEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCE--EEE--eCCCCccEEEEEECCHHHHHHHHHHHHHC
Confidence 34444566643 444 33333447788888877788777777543
No 272
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.54 E-value=36 Score=20.59 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=7.8
Q ss_pred EEEEEeCCH
Q 032280 106 FAFAVFSDQ 114 (144)
Q Consensus 106 ~aFV~F~~~ 114 (144)
.|+|.|+|.
T Consensus 39 ~ClV~FeD~ 47 (68)
T 2e5p_A 39 VCLVQFEDD 47 (68)
T ss_dssp EEEEEETTT
T ss_pred EEEEEEccC
Confidence 899999974
No 273
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=25.49 E-value=39 Score=21.17 Aligned_cols=20 Identities=10% Similarity=0.301 Sum_probs=17.4
Q ss_pred cCCCCCCCHHHHHHHhhcCC
Q 032280 70 AGLPEDVKPREIYNLFREFP 89 (144)
Q Consensus 70 gnLp~~vte~~L~~~F~~~G 89 (144)
|.|...++|++|++++++..
T Consensus 48 Gqi~~ki~e~~L~~lL~~i~ 67 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGIA 67 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHh
Confidence 68889999999999998763
No 274
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=25.07 E-value=2e+02 Score=22.28 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=26.7
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
+|.+.-.++|.+ .++ ...+++++.|+.+.+.+.+++..+.|.
T Consensus 299 ~l~~~a~~~Ga~--ak~--sGAGgGg~vial~~~~~~~~~l~~~l~ 340 (365)
T 3k17_A 299 ELADSAENMGGA--GKS--SGSGGGDCGIAFSKTKELAEKLVNEWE 340 (365)
T ss_dssp HHHHHHHHTTSE--EEE--CTTCSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCE--EEe--cCCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 455555678876 554 333334488888888777776666654
No 275
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=24.88 E-value=63 Score=20.87 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhcCCCeE
Q 032280 63 EVRTLFVAGLPEDVKPREIYNLFREFPGYE 92 (144)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~~G~v~ 92 (144)
...++|+++.-.+...+.|++++..||+..
T Consensus 9 ~g~~f~l~~~~p~~~r~~l~ryiia~GG~v 38 (104)
T 3pc6_A 9 EGKHFFLYGEFPGDERRRLIRYVTAFNGEL 38 (104)
T ss_dssp TTCEEEEESCCSTTHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHHHcCCEE
Confidence 457899988765556778999999999863
No 276
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=24.64 E-value=1.5e+02 Score=21.38 Aligned_cols=45 Identities=4% Similarity=0.082 Sum_probs=30.9
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 032280 75 DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 75 ~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
.+|+++|+++|.....--.. ...-.+..|.|.+...|..+++.|.
T Consensus 90 ~vtd~ei~~~Y~~~~~~f~~------~~~~~~~~I~~~~~~~A~~~~~~l~ 134 (252)
T 3rfw_A 90 KIDAAKVKAFYDQNKDKYVK------PARVQAKHILVATEKEAKDIINELK 134 (252)
T ss_dssp CCCHHHHHHHHHHHGGGSEE------CCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhHHhccc------cceEEEEEEEeCCHHHHHHHHHHHH
Confidence 68999999999754221000 0001167888899999999998887
No 277
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=24.36 E-value=1e+02 Score=24.18 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=33.7
Q ss_pred EEEcCCCCCCC----HHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHH
Q 032280 67 LFVAGLPEDVK----PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMY 122 (144)
Q Consensus 67 LfVgnLp~~vt----e~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~ 122 (144)
-+||||..-.. ...+.++.++||.|..+++.. .-+|...|.+.+..++.
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~-------~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT-------KTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT-------EEEEEECSHHHHHHHHT
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC-------CCEEEECCHHHHHHHHH
Confidence 35788764321 356778888999998887621 34677788888887763
No 278
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=24.30 E-value=1.5e+02 Score=22.03 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=25.3
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHHhcC
Q 032280 80 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNN 126 (144)
Q Consensus 80 ~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~lnG 126 (144)
++.+...+.| .+.+ . +.+ +..|..|.+.+.++++.+.|..
T Consensus 224 ~i~~~~~~~G---~a~~--S-GsG-~tvf~l~~~~~~a~~~~~~l~~ 263 (283)
T 2ww4_A 224 AVLSWLLEYA---PSRL--T-GTG-ACVFAEFDTESEARQVLEQAPE 263 (283)
T ss_dssp HHHHHHHTTS---CEEE--C-TTS-SCEEEEESSHHHHHHHHHHCCC
T ss_pred HHHHHHHHcC---CceE--C-Ccc-cceEEEeCCHHHHHHHHHHhhh
Confidence 3445556777 2333 2 222 3677778888888888888764
No 279
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=24.26 E-value=92 Score=16.74 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=35.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeC---CHHHHHHHHHHh
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFS---DQQSALGAMYAL 124 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~---~~~~A~~A~~~l 124 (144)
++.|.++.-.-....+++.+.+..+|.++.+-... + -..|+|. +.+....+++.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~--~--~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVT--N--ECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTT--T--EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC--C--EEEEEECCCCCHHHHHHHHHHC
Confidence 56677776655667788999999888887763322 2 5777776 234445555544
No 280
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=23.10 E-value=52 Score=18.44 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.6
Q ss_pred eCCHHHHHHHHHHhcC
Q 032280 111 FSDQQSALGAMYALNN 126 (144)
Q Consensus 111 F~~~~~A~~A~~~lnG 126 (144)
|.+.+.+.+|++..+|
T Consensus 23 F~~~~~~~~AL~~t~g 38 (53)
T 2knz_A 23 FINREANLQALIATGG 38 (53)
T ss_dssp CCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCC
Confidence 5688899999988887
No 281
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=23.07 E-value=73 Score=17.27 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=31.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHH
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMY 122 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~ 122 (144)
++.|.|+.=.-....+++.+++. ++.++.+-...+ -+.|+|...+....+++
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~----~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEK----KVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTT----EEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCC----EEEEEECCHHHHHHHHH
Confidence 45566665544456688888888 787777643322 67788876533334443
No 282
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=22.96 E-value=1e+02 Score=16.84 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=37.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHh
Q 032280 66 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYAL 124 (144)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~l 124 (144)
++.|.++.-.-....+++.+.+..+|.++.+-...+ -+.|.|.. .+....+++.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEK----NATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTT----EEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCC----EEEEEECCCCCCHHHHHHHHHHc
Confidence 567888766556677899999999998888744332 67788864 34445556554
No 283
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=22.78 E-value=56 Score=17.82 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=13.2
Q ss_pred eCCHHHHHHHHHHhcCC
Q 032280 111 FSDQQSALGAMYALNNF 127 (144)
Q Consensus 111 F~~~~~A~~A~~~lnG~ 127 (144)
|.+.+.+.+|++..+|-
T Consensus 19 F~d~~~~~~AL~~~~gn 35 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGGS 35 (46)
T ss_dssp CCCHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHhCCC
Confidence 46778888999888764
No 284
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=22.52 E-value=80 Score=22.47 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCCHHHHHHHHHH
Q 032280 79 REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 123 (144)
Q Consensus 79 ~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~~~~A~~A~~~ 123 (144)
++|+.+|+.|-..+ .+.++.+.+-.|.+.+.|.+.++.
T Consensus 130 ~~i~~fF~~YK~le-------~k~gK~v~~~gw~~~~~A~~~I~~ 167 (174)
T 2prd_A 130 QEIQHFFETYKALE-------AKKGKWVKVTGWRDRKAALEEVRA 167 (174)
T ss_dssp HHHHHHHHHTTGGG-------GGGTCCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-------ccCCCceEECcccCHHHHHHHHHH
Confidence 56778999996532 111233777789999999887764
No 285
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=22.38 E-value=1.1e+02 Score=16.78 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=39.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC--HHHHHHHHHHh
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD--QQSALGAMYAL 124 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~--~~~A~~A~~~l 124 (144)
.++.|.++.-.-....+++.+.+..+|.++.+-...+ -+.|+|.. .+...++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~----~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATE----KLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTT----EEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCC----EEEEEECCCCHHHHHHHHHHc
Confidence 3677888887777788999999999998888744332 67788875 33344555544
No 286
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=21.41 E-value=40 Score=28.16 Aligned_cols=42 Identities=10% Similarity=-0.021 Sum_probs=27.7
Q ss_pred HHHHhh--cCCCeEEEEEeecCCCC-CcEEEEEeCCHHHHHHHHH
Q 032280 81 IYNLFR--EFPGYESSHLRSSTQNS-QPFAFAVFSDQQSALGAMY 122 (144)
Q Consensus 81 L~~~F~--~~G~v~~v~l~~~~~~~-~~~aFV~F~~~~~A~~A~~ 122 (144)
|..+|. .+|-|.++.+....... ...+++.|.+.++|.+|++
T Consensus 250 l~~L~~~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 250 IDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp CGGGGSSSSSEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHH
T ss_pred hhcccccCcEEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHH
Confidence 445554 47778888886653322 2378889999888766653
No 287
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis}
Probab=20.93 E-value=2.5e+02 Score=20.42 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=43.6
Q ss_pred cceEEEcCCCCC-CCHHHHHHHhhcCCC---eEEEEEeecCC----------CCCcEEEEEeCC---------HHHHHHH
Q 032280 64 VRTLFVAGLPED-VKPREIYNLFREFPG---YESSHLRSSTQ----------NSQPFAFAVFSD---------QQSALGA 120 (144)
Q Consensus 64 ~~tLfVgnLp~~-vte~~L~~~F~~~G~---v~~v~l~~~~~----------~~~~~aFV~F~~---------~~~A~~A 120 (144)
.-+|||-++..+ -+.+.|.+.|.+.|. +..+.+..+.. ...++-.|.|++ .+.+..+
T Consensus 7 ~pvvliHG~~~~~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l~~~ 86 (249)
T 3fle_A 7 TATLFLHGYGGSERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWIKEV 86 (249)
T ss_dssp EEEEEECCTTCCGGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCChhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHHHHH
Confidence 457999777655 345678888888773 55555432211 123466777876 3345566
Q ss_pred HHHhcCC-ccCCCCCeEEEEeecC
Q 032280 121 MYALNNF-APSDSACSLLFPHSMA 143 (144)
Q Consensus 121 ~~~lnG~-~~~~~g~~l~v~~s~~ 143 (144)
++.|... .+ .+..-|-|||+
T Consensus 87 i~~l~~~~~~---~~~~lvGHSmG 107 (249)
T 3fle_A 87 LSQLKSQFGI---QQFNFVGHSMG 107 (249)
T ss_dssp HHHHHHTTCC---CEEEEEEETHH
T ss_pred HHHHHHHhCC---CceEEEEECcc
Confidence 6665321 22 34456677763
No 288
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=20.22 E-value=66 Score=17.93 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.1
Q ss_pred eCCHHHHHHHHHHhcC
Q 032280 111 FSDQQSALGAMYALNN 126 (144)
Q Consensus 111 F~~~~~A~~A~~~lnG 126 (144)
|.+++.+.+|++..+|
T Consensus 24 F~~~~~~~~AL~~t~g 39 (52)
T 2jy5_A 24 FLNREANLQALIATGG 39 (52)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCC
Confidence 5678888999988877
No 289
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=20.12 E-value=30 Score=24.05 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=32.1
Q ss_pred ceEEEcCCCCCCCHH----------HHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC
Q 032280 65 RTLFVAGLPEDVKPR----------EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD 113 (144)
Q Consensus 65 ~tLfVgnLp~~vte~----------~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~ 113 (144)
|.-|+-.|..+.-++ ||.+..+..| |.+..|-++..++.-|++++.++
T Consensus 43 R~af~m~Lkp~~~eEYk~~Ha~VWPEv~~~Lk~aG-I~nYSIfl~~~~~~LF~~~E~~d 100 (144)
T 2qlw_A 43 KHAFKMQLNPGMEAEYRKRHDEIWPELVDLLHQSG-ASDYSIHLDRETNTLFGVLTRPK 100 (144)
T ss_dssp EEEEEEEBCTTCHHHHHHHHHTCCHHHHHHHHHHT-CEEEEEEEETTTTEEEEEEEEET
T ss_pred EEEEEEEcCchHHHHHHHHHHhCCHHHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 456677776665443 4666777776 45666655555556699999988
No 290
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=20.12 E-value=1.2e+02 Score=16.38 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=40.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCcEEEEEeCC----HHHHHHHHHHhcCCc
Q 032280 65 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD----QQSALGAMYALNNFA 128 (144)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~~G~v~~v~l~~~~~~~~~~aFV~F~~----~~~A~~A~~~lnG~~ 128 (144)
.++.|.++.-.-....+++.+.+..+|.++.+-...+ -..|+|.+ .+....+++.+ |+.
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~----~~~v~~~~~~~~~~~i~~~i~~~-G~~ 70 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATE----TVNVIYDPAETGTAAIQEKIEKL-GYH 70 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGT----EEEEEECTTTCCHHHHHHHHHHH-TCE
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCC----EEEEEECCCCCCHHHHHHHHHHC-CCc
Confidence 4688889887777788999999998998888744332 57778763 34445555544 443
No 291
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.09 E-value=65 Score=18.60 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=13.2
Q ss_pred eCCHHHHHHHHHHhcCC
Q 032280 111 FSDQQSALGAMYALNNF 127 (144)
Q Consensus 111 F~~~~~A~~A~~~lnG~ 127 (144)
|.|++.+.+|++..+|-
T Consensus 29 F~d~~~~~~AL~~~~gn 45 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGGS 45 (58)
T ss_dssp CCCHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHhCCC
Confidence 46778888999888764
No 292
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=20.02 E-value=42 Score=28.35 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=29.8
Q ss_pred HHHHHh------hcCCCeEEEEEeecCCC-CCcEEEEEeCCHHHHHHHHHHhc
Q 032280 80 EIYNLF------REFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALN 125 (144)
Q Consensus 80 ~L~~~F------~~~G~v~~v~l~~~~~~-~~~~aFV~F~~~~~A~~A~~~ln 125 (144)
||.++| ..+|- .++++...... .....++.|.+.+++.+++..+.
T Consensus 246 Dl~~l~~a~GseGtlGV-t~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 297 (571)
T 1f0x_A 246 DPDRLFESSGCAGKLAV-FAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHIL 297 (571)
T ss_dssp CGGGCCSSTTCTTSSEE-EEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHH
T ss_pred cHHHHHHhcCCCCceeE-EEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHH
Confidence 677777 24444 67766544222 22267889999999988887665
Done!