Query 032281
Match_columns 144
No_of_seqs 219 out of 1230
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_Q Ribosomal protein S17 c 100.0 1.5E-70 5E-75 428.0 13.7 144 1-144 1-157 (157)
2 3u5c_L RP41, S18, YS12, 40S ri 100.0 3.1E-70 1.1E-74 425.7 13.5 140 3-144 7-156 (156)
3 2zkq_q 40S ribosomal protein S 100.0 1.9E-69 6.7E-74 422.0 8.9 141 1-144 1-158 (158)
4 3iz6_P 40S ribosomal protein S 100.0 5.5E-70 1.9E-74 426.1 -3.0 143 1-143 1-160 (161)
5 3j20_R 30S ribosomal protein S 100.0 1.2E-55 3.9E-60 328.7 12.8 109 21-133 2-110 (113)
6 3bbn_Q Ribosomal protein S17; 100.0 5E-43 1.7E-47 269.2 9.1 92 41-133 46-138 (142)
7 1qd7_I S17 ribosomal protein; 100.0 5.4E-36 1.8E-40 214.7 11.5 79 54-133 2-80 (89)
8 3r8n_Q 30S ribosomal protein S 100.0 1.2E-36 4.1E-41 214.2 6.0 78 54-132 2-79 (80)
9 2vqe_Q 30S ribosomal protein S 100.0 8.8E-35 3E-39 213.9 10.6 79 54-133 3-81 (105)
10 2dgy_A MGC11102 protein; EIF-1 48.7 41 0.0014 24.0 5.6 53 56-122 16-73 (111)
11 1d7q_A Translation initiation 44.1 48 0.0017 24.8 5.6 56 56-125 32-91 (143)
12 2l9z_A PR domain zinc finger p 34.4 11 0.00039 22.7 0.6 18 33-51 15-32 (39)
13 3sjy_A Translation initiation 31.6 94 0.0032 25.4 6.0 56 53-112 222-286 (403)
14 2vl6_A SSO MCM N-TER, minichro 30.8 37 0.0013 26.7 3.3 26 88-113 210-235 (268)
15 2k4k_A GSP13, general stress p 30.0 1.1E+02 0.0038 21.5 5.5 62 54-129 8-80 (130)
16 1jt8_A EIF-1A, probable transl 29.7 70 0.0024 22.5 4.2 52 56-121 21-77 (102)
17 1ltl_A DNA replication initiat 27.1 46 0.0016 26.5 3.2 27 88-114 197-223 (279)
18 2v1q_A SLA1, cytoskeleton asse 26.4 40 0.0014 19.8 2.2 20 94-113 12-31 (60)
19 3ulb_A Target of rapamycin com 26.3 1E+02 0.0034 22.6 4.6 38 86-131 24-67 (121)
20 2a28_A BZZ1 protein; SH3 domai 25.3 32 0.0011 20.0 1.5 21 95-115 11-31 (54)
21 2drm_A Acanthamoeba myosin IB; 24.7 33 0.0011 20.1 1.5 22 93-114 12-33 (58)
22 1jo8_A ABP1P, actin binding pr 24.6 33 0.0011 20.3 1.5 20 95-114 11-30 (58)
23 1w1f_A Tyrosine-protein kinase 24.5 37 0.0013 20.4 1.8 23 93-115 16-38 (65)
24 2lj0_A Sorbin and SH3 domain-c 24.4 30 0.001 21.8 1.4 22 93-114 15-36 (65)
25 2bz8_A SH3-domain kinase bindi 24.3 34 0.0012 20.2 1.5 20 95-114 12-31 (58)
26 3e1y_E Eukaryotic peptide chai 24.1 34 0.0011 26.0 1.8 50 53-111 18-69 (204)
27 1agq_A GDNF, glial cell-derive 24.1 20 0.00067 26.8 0.4 26 21-47 51-76 (135)
28 2fpe_A C-JUN-amino-terminal ki 23.6 33 0.0011 20.6 1.4 20 95-114 14-33 (62)
29 1uti_A GRB2-related adaptor pr 23.5 48 0.0016 19.5 2.1 22 93-114 10-31 (58)
30 1zuu_A BZZ1 protein; SH3 domai 23.4 27 0.00093 20.5 0.9 22 94-115 11-32 (58)
31 1sem_A SEM-5; SRC-homology 3 ( 23.0 35 0.0012 20.0 1.4 21 94-114 12-32 (58)
32 1k4u_S Phagocyte NADPH oxidase 22.9 52 0.0018 19.6 2.2 22 93-114 14-35 (62)
33 1i07_A Epidermal growth factor 22.7 37 0.0013 20.2 1.5 22 93-114 10-31 (60)
34 1zlm_A Osteoclast stimulating 22.4 53 0.0018 19.3 2.2 22 93-114 12-33 (58)
35 1yn8_A NBP2, NAP1-binding prot 22.3 63 0.0022 18.8 2.5 21 94-114 11-31 (59)
36 4e6r_A Cytoplasmic protein NCK 22.3 39 0.0013 19.7 1.5 21 94-114 11-31 (58)
37 1w70_A Neutrophil cytosol fact 22.3 36 0.0012 20.3 1.4 21 94-114 14-34 (60)
38 1oot_A Hypothetical 40.4 kDa p 21.9 40 0.0014 19.9 1.5 22 94-115 13-34 (60)
39 1a62_A RHO; transcription term 21.7 1.2E+02 0.004 21.8 4.3 30 102-131 90-119 (130)
40 2oaw_A Spectrin alpha chain, b 21.6 58 0.002 19.3 2.2 20 95-114 12-31 (65)
41 2iim_A Proto-oncogene tyrosine 21.5 41 0.0014 20.1 1.5 21 94-114 16-36 (62)
42 2xmf_A Myosin 1E SH3; motor pr 21.5 38 0.0013 20.1 1.4 23 93-115 14-36 (60)
43 2djq_A SH3 domain containing r 21.4 40 0.0014 20.5 1.5 20 95-114 18-37 (68)
44 2gnc_A SLIT-ROBO RHO GTPase-ac 21.4 39 0.0013 20.2 1.4 21 94-114 16-36 (60)
45 2ask_A Artemin; glial cell der 21.2 23 0.00078 25.5 0.3 26 21-47 25-50 (113)
46 2vwf_A Growth factor receptor- 20.6 59 0.002 18.9 2.1 22 93-114 11-32 (58)
47 1cka_A C-CRK N-terminal SH3 do 20.5 56 0.0019 19.1 2.0 21 94-114 11-31 (57)
48 3j20_X 30S ribosomal protein S 20.3 42 0.0014 22.6 1.4 14 102-115 48-61 (71)
49 3u5c_c S33, YS27, 40S ribosoma 20.2 41 0.0014 22.4 1.3 15 101-115 46-60 (67)
50 2cuc_A SH3 domain containing r 20.1 45 0.0015 20.3 1.5 21 95-115 18-38 (70)
No 1
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=100.00 E-value=1.5e-70 Score=428.01 Aligned_cols=144 Identities=62% Similarity=1.111 Sum_probs=137.3
Q ss_pred CchhhhHhhccCC-------------CCCCCeeeeeecccccCCcccccccccCcCCCceeeeeEeceEEEEEEEecCCC
Q 032281 1 MAEQTEKAFLKQP-------------GKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMN 67 (144)
Q Consensus 1 m~~~~~~a~~kq~-------------~~~~~r~~~~igl~~k~P~~~~~~~y~D~kcPf~g~~sirg~il~G~VvS~KM~ 67 (144)
||+|+|||||||+ +++++||++||||||++|++||+|+|||++|||||||||||++|+|+|+|++|+
T Consensus 1 m~~q~e~a~qkq~~i~~~~~~~~~~~~~~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsvRgr~l~G~VVS~KMd 80 (157)
T 2xzm_Q 1 MDTQIQRAYQKQDGVFLNSKKLLAKKTSAGVRYYKNIGLGFKTPKEAIEGTYVDKKCPFTSNLSIRGKIIKGLVISTKMN 80 (157)
T ss_dssp CTTTTSSSSCCCCSSCCGGGGGGSSCCSSSCCCCCCCCSSCCCCHHHHTCCCCCTTCSSSSSCCCCSCEEEEEEEECCST
T ss_pred CcchhhHhhccCcceeecceehhccccccCceeEEecccCCcCChHHhcccccCCCCCCccceeeeeEEEEEEEEEecCC
Confidence 8999999999994 457789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEeeecCCCCCcccccccC
Q 032281 68 RTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 144 (144)
Q Consensus 68 KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPlSKtK~f~V~~ii~~~~~~~~~k~f~~f 144 (144)
|||+|++++++|||+|+|+++|+++|+|||+|||+|++||+|+|+|||||||||+|+|++|++++..++++|||++|
T Consensus 81 KTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~I~EcRPLSKtKrw~Vv~I~~ka~~g~~~k~f~~f 157 (157)
T 2xzm_Q 81 RTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILVAGQCRPISKTVRFNALQVVPNEIIGSVRKQFLLF 157 (157)
T ss_dssp TEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEEEEECCCCSSSCCEEEEEECCCCCCSCTTTCCCCC
T ss_pred ccEEEEEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEEEEEcCCCCCcEEEEEEEEEeccccCccchhhhcC
Confidence 99999999999999999999999999999988999999999999999999999999999999886533478999998
No 2
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=3.1e-70 Score=425.70 Aligned_cols=140 Identities=64% Similarity=1.097 Sum_probs=134.3
Q ss_pred hhhhHhhccCC----------CCCCCeeeeeecccccCCcccccccccCcCCCceeeeeEeceEEEEEEEecCCCCeEEE
Q 032281 3 EQTEKAFLKQP----------GKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIV 72 (144)
Q Consensus 3 ~~~~~a~~kq~----------~~~~~r~~~~igl~~k~P~~~~~~~y~D~kcPf~g~~sirg~il~G~VvS~KM~KTvvV 72 (144)
+|+|+|||||+ +++.+||++||||||++|++||||+|||++|||||||||||++|+|+|+|++|+|||+|
T Consensus 7 ~q~e~a~qkq~~i~~~~~~~~~~~~~r~~~~iGl~~k~P~~a~~g~y~D~kCPf~G~lsvRgr~l~G~VVS~KMdKTIvV 86 (156)
T 3u5c_L 7 VQSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVI 86 (156)
T ss_dssp SSCSSSCCCCTTCCCCSSSCCSSSSCCCCCCCSTTCCCCHHHHHCCCCCTTCTTTSSCCEEEEEEEEEEEECCSTTEEEE
T ss_pred hhhhhhhccCcceeecccccccccCceeeeecCcCccCChhhccceeccccCCcccceeEeeEEEEEEEEeecCCCeEEE
Confidence 39999999994 46788999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEeeceeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEeeecCCCCCcccccccC
Q 032281 73 RRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 144 (144)
Q Consensus 73 ~v~~~~~~pkY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPlSKtK~f~V~~ii~~~~~~~~~k~f~~f 144 (144)
++++++|||+|+|+++|+++|+|||+|||+|++||+|+|+|||||||||+|+|++|++++. +++|||++|
T Consensus 87 ~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ka~--~~~k~f~~f 156 (156)
T 3u5c_L 87 RRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAG--KANKQFAKF 156 (156)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEEECCTTSCCCTTCEEEEEEEEEEETTEEEEEEEECCCCS--SSGGGCCCC
T ss_pred EEEEEeecCccceEEECceEEEEECCCcCcCCCCCEEEEEecccCCCcEeEEEEEEEecCC--CcccccccC
Confidence 9999999999999999999999999779999999999999999999999999999999963 579999998
No 3
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=1.9e-69 Score=422.04 Aligned_cols=141 Identities=65% Similarity=1.143 Sum_probs=73.1
Q ss_pred Cch-hhhHhhccCC---------------CCCCCeeeeeecccccCCcccccccccCcCCCceeeeeEeceEEEEEEEec
Q 032281 1 MAE-QTEKAFLKQP---------------GKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSA 64 (144)
Q Consensus 1 m~~-~~~~a~~kq~---------------~~~~~r~~~~igl~~k~P~~~~~~~y~D~kcPf~g~~sirg~il~G~VvS~ 64 (144)
||+ |+|||||||+ +++++||+|||||||++|+|||+|+|||++|||||+|||||++|+|+|+|+
T Consensus 1 m~~~q~e~afqkq~~i~~~~~~~~~~~~~~~~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsvRGr~l~G~VVS~ 80 (158)
T 2zkq_q 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKM 80 (158)
T ss_dssp ----------------------------------------------------------------------CEEEEEEEEC
T ss_pred CcchhhhhhhccCcceeecceehhccccccccCceEEEecccCccCChHHhcccccCCCCCCccccceeeEEEEEEEEEc
Confidence 888 9999999993 346789999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCC-CCCCCCEEEEeeeecCCCeeeEEEEEeeecCCCCCccccccc
Q 032281 65 KMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF-RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 143 (144)
Q Consensus 65 KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~-~~kvGD~V~I~ecRPlSKtK~f~V~~ii~~~~~~~~~k~f~~ 143 (144)
+|+|||+|++++++|||+|+|+++|+++|+|||+||| +|++||+|+|+|||||||||+|+|++|++++ +++|||++
T Consensus 81 KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD~V~I~E~RPLSKtKrw~Vv~I~~~~---~~~k~f~~ 157 (158)
T 2zkq_q 81 KMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA---GTKKQFQK 157 (158)
T ss_dssp SSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECCSCSSSCC-CEEEEEEEC------------
T ss_pred cCCccEEEEEEEEEecCccceeeecceeEEEECCcccCcCCCCCEEEEEEccccCCcEEEEEEEEecCC---Ccchhhhc
Confidence 9999999999999999999999999999999997788 8999999999999999999999999999754 46899998
Q ss_pred C
Q 032281 144 M 144 (144)
Q Consensus 144 f 144 (144)
|
T Consensus 158 f 158 (158)
T 2zkq_q 158 F 158 (158)
T ss_dssp -
T ss_pred C
Confidence 8
No 4
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.5e-70 Score=426.08 Aligned_cols=143 Identities=97% Similarity=1.532 Sum_probs=84.0
Q ss_pred CchhhhHhhccCC---------------CCCCCeeeeeecccccCCcccccccccCcCCCceeeeeEeceEEEEEEEecC
Q 032281 1 MAEQTEKAFLKQP---------------GKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAK 65 (144)
Q Consensus 1 m~~~~~~a~~kq~---------------~~~~~r~~~~igl~~k~P~~~~~~~y~D~kcPf~g~~sirg~il~G~VvS~K 65 (144)
||+|+|+|||||+ +++.+|||+||||||++|++||||+|||++|||||||||||++|+|+|+|++
T Consensus 1 ~~~q~e~a~qkq~~i~~~~k~~~~~~~~~~~~~r~~k~iGl~~k~P~~a~~g~y~D~kCPf~G~lsiRgril~G~VVS~K 80 (161)
T 3iz6_P 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAK 80 (161)
T ss_dssp ---------------------------------------CCCCCCEEEECCCCSSSSCCSEEEEEEEEEEECTTTCCEEE
T ss_pred CcchhhhhhccCccceecceeccccccccccCceEEEecCcCCCCChHHhcCcccccCCCccceeEEeeEEEEEEEEecc
Confidence 8999999999993 3467899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEeeecCCCC--Cccccccc
Q 032281 66 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSG--GAKKAFTA 143 (144)
Q Consensus 66 M~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPlSKtK~f~V~~ii~~~~~~--~~~k~f~~ 143 (144)
|+|||+|++++++|||+|+|+++++++|+|||+|||+|++||+|+|+|||||||||+|+|++|+++++.+ +.+|||..
T Consensus 81 MdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~~~~~~~~~~~k~f~~ 160 (161)
T 3iz6_P 81 MNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSTGGSGGKKAFTA 160 (161)
T ss_dssp EEEEEEEECTTCCCCSSCEEEEEECCCSSSSCCEEEEECCCCCC------------------------------------
T ss_pred CCCeEEEEEEEEEecCccceEEECceeEEEECCCCCcCCCCCEEEEEeccCCCCcEeEEEEEEEecCcccccccchhccc
Confidence 9999999999999999999999999999999966999999999999999999999999999999997653 56899964
No 5
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-55 Score=328.67 Aligned_cols=109 Identities=42% Similarity=0.766 Sum_probs=104.3
Q ss_pred eeeecccccCCcccccccccCcCCCceeeeeEeceEEEEEEEecCCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCC
Q 032281 21 WKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPC 100 (144)
Q Consensus 21 ~~~igl~~k~P~~~~~~~y~D~kcPf~g~~sirg~il~G~VvS~KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~ 100 (144)
|+||||||++|+++ |+|++|||||||||||++|+|+|+|+||+|||+|+++|++|||+|+||++++++|+|||+||
T Consensus 2 m~~igl~~~~p~~~----~~d~~cPf~G~~~vrgr~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~ 77 (113)
T 3j20_R 2 MRDIGLRVQPPAEK----CDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPC 77 (113)
T ss_dssp CCCCCTTCCCCSSC----CCCSSSTTSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTT
T ss_pred chhcCCCCCCCccc----ccCCCCCCcceeeEeeEEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEEEEECCCC
Confidence 68999999999765 55999999999999999999999999999999999999999999999999999999999659
Q ss_pred CCCCCCCEEEEeeeecCCCeeeEEEEEeeecCC
Q 032281 101 FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS 133 (144)
Q Consensus 101 ~~~kvGD~V~I~ecRPlSKtK~f~V~~ii~~~~ 133 (144)
|+|++||+|+|+|||||||||+|+|++|++++.
T Consensus 78 n~~~vGD~V~I~E~RPlSKtKr~~vv~i~~~a~ 110 (113)
T 3j20_R 78 INAKVGDKVLIAETRPLSKTKHFVVVAVLERAE 110 (113)
T ss_dssp SCCCTTSEEEEEECSCSSSSEEEEEEEECCCCC
T ss_pred CCCCCCCEEEEEecccCCCcEeEEEEEEEeccc
Confidence 999999999999999999999999999999864
No 6
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=5e-43 Score=269.17 Aligned_cols=92 Identities=28% Similarity=0.311 Sum_probs=75.8
Q ss_pred CcCCCceeeeeEec-eEEEEEEEecCCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCC
Q 032281 41 DKKCPFTGTVSIRG-RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSK 119 (144)
Q Consensus 41 D~kcPf~g~~sirg-~il~G~VvS~KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPlSK 119 (144)
|++|||||+|+||| ++|.|+|+|+||+|||+|++++++|||+|+||++++++|+||| |.|+|++||+|+|+|||||||
T Consensus 46 ~~~cP~~G~lsvrg~k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHD-e~n~~kvGD~V~I~E~RPLSK 124 (142)
T 3bbn_Q 46 PNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHD-PDNQFKVGDVVRLEKSRPISK 124 (142)
T ss_dssp --------------CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEEC-TTCCCCTTEEEEEEECCCSSS
T ss_pred CCcCCCCccccccceEEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEEC-CCCCCCCCCEEEEEEccCCCC
Confidence 99999999999999 9999999999999999999999999999999999999999999 778999999999999999999
Q ss_pred eeeEEEEEeeecCC
Q 032281 120 TVRFNVLKVIPAGS 133 (144)
Q Consensus 120 tK~f~V~~ii~~~~ 133 (144)
+|+|+|++|++++.
T Consensus 125 tKrw~VveIveka~ 138 (142)
T 3bbn_Q 125 TKSFVALPVIARAA 138 (142)
T ss_dssp SCCEEECCCSEEEC
T ss_pred cEEEEEEEEEeccc
Confidence 99999999999864
No 7
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=100.00 E-value=5.4e-36 Score=214.73 Aligned_cols=79 Identities=29% Similarity=0.343 Sum_probs=75.9
Q ss_pred ceEEEEEEEecCCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEeeecCC
Q 032281 54 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS 133 (144)
Q Consensus 54 g~il~G~VvS~KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPlSKtK~f~V~~ii~~~~ 133 (144)
.++|+|+|+|++|+|||+|++++++|||+|+||++++++|+||| |.|+|++||+|+|+|||||||||+|+|++|++++.
T Consensus 2 ~k~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHD-e~n~~k~GD~V~I~E~RPlSKtK~~~vv~iv~~a~ 80 (89)
T 1qd7_I 2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHD-EHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAV 80 (89)
T ss_pred cEEEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeC-CccCCCCCCEEEEEEcccCCCCEEEEEEEEEeece
Confidence 48999999999999999999999999999999999999999999 77899999999999999999999999999998764
No 8
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=100.00 E-value=1.2e-36 Score=214.22 Aligned_cols=78 Identities=31% Similarity=0.441 Sum_probs=75.5
Q ss_pred ceEEEEEEEecCCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEeeecC
Q 032281 54 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG 132 (144)
Q Consensus 54 g~il~G~VvS~KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPlSKtK~f~V~~ii~~~ 132 (144)
.++|+|+|+|++|+|||+|+++++++||+|+||++++++|+||| |+|+|++||+|+|+|||||||||+|+|++|++++
T Consensus 2 ~r~l~G~VvS~km~KTvvV~v~~~~~hp~Y~K~~kr~kk~~aHD-e~n~~~~GD~V~I~e~RPlSKtk~~~v~~i~~~~ 79 (80)
T 3r8n_Q 2 IRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHD-ENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 79 (80)
T ss_dssp CSCBCCEEEECCSTTCCEEECCEEEEETTTEEEEEECCEEECBC-GGGCCCTTCEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred CeEEEEEEEecCCCCeEEEEEEEEEEcccccccEEecceEEEEC-CCCCCCCCCEEEEEEeccCCCcEeEEEEEEEEec
Confidence 37899999999999999999999999999999999999999999 8999999999999999999999999999999875
No 9
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=100.00 E-value=8.8e-35 Score=213.88 Aligned_cols=79 Identities=34% Similarity=0.433 Sum_probs=75.9
Q ss_pred ceEEEEEEEecCCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeeeecCCCeeeEEEEEeeecCC
Q 032281 54 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS 133 (144)
Q Consensus 54 g~il~G~VvS~KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ecRPlSKtK~f~V~~ii~~~~ 133 (144)
.++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||| |.|+|++||+|+|+|||||||||+|+|++|++++.
T Consensus 3 ~k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHD-e~n~~k~GD~V~I~E~RPlSKtKr~~vv~iv~~a~ 81 (105)
T 2vqe_Q 3 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHD-PEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR 81 (105)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEEC-TTCCCCTTCEEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred ceEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEEC-CCCCCCCCCEEEEEEcccCCCCEEEEEEEEeeccc
Confidence 47999999999999999999999999999999999999999999 67999999999999999999999999999998863
No 10
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.73 E-value=41 Score=24.00 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=37.0
Q ss_pred EEEEEEEecCCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCC----CCCCCCEEEEeeeecCC-Ceee
Q 032281 56 ILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF----RVKEGDHVIIGQCRPLS-KTVR 122 (144)
Q Consensus 56 il~G~VvS~KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~----~~kvGD~V~I~ecRPlS-KtK~ 122 (144)
...|+|+..-.+....|.-+- -..++||.|..+ -+..||.|++. .+|.. ++|-
T Consensus 16 e~~g~V~~~lgn~~f~V~l~n-------------G~~~la~i~GK~Rk~IwI~~GD~VlVe-~~~yd~~~kg 73 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETAQ-------------GQRFLVSMPSKYRKNIWIKRGDFLIVD-PIEEGEKVKA 73 (111)
T ss_dssp CEEEEEEECCSSSEEEEECTT-------------SCEEEEECCTTCCSCCCCCSSCEEEEE-ECSSCSSCCE
T ss_pred eEEEEEEEeCCCCEEEEEeCC-------------CCEEEEEechhhcccEEEcCCCEEEEE-ecccCCcceE
Confidence 467899999888887776432 234678885444 38899999987 45766 5443
No 11
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=44.07 E-value=48 Score=24.82 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=38.7
Q ss_pred EEEEEEEecCCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCC----CCCCCCEEEEeeeecCCCeeeEEE
Q 032281 56 ILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF----RVKEGDHVIIGQCRPLSKTVRFNV 125 (144)
Q Consensus 56 il~G~VvS~KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~----~~kvGD~V~I~ecRPlSKtK~f~V 125 (144)
.+.|+|+....+....|..+- -..++||.|.-+ -+..||.|++.. +|...+|-=++
T Consensus 32 e~~g~V~e~lgn~~f~V~l~n-------------G~~~La~I~GKmRk~IwI~~GD~VlVe~-~~yd~~KG~Ii 91 (143)
T 1d7q_A 32 QEYAQVIKMLGNGRLEAMCFD-------------GVKRLCHIRGKLRKKVWINTSDIILVGL-RDYQDNKADVI 91 (143)
T ss_dssp EEEEEEEEECSSSEEEEEETT-------------TEEEEEECCSGGGGSCCCCTTCEEEEEC-SSSSSSCCEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCC-------------CCEEEEEecccceeeEEecCCCEEEEee-ccCCCCeEEEE
Confidence 478999998888887776432 123567774443 388999999875 68877775333
No 12
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=34.36 E-value=11 Score=22.72 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=11.9
Q ss_pred ccccccccCcCCCceeeee
Q 032281 33 EAIEGTYIDKKCPFTGTVS 51 (144)
Q Consensus 33 ~~~~~~y~D~kcPf~g~~s 51 (144)
|.|+..|+ ..||=||-+.
T Consensus 15 E~C~~~~~-~~Cp~HGP~~ 32 (39)
T 2l9z_A 15 TLCDRAYP-SDCPEHGPVT 32 (39)
T ss_dssp GGGTEEES-SSBTTTBSCS
T ss_pred HHHhhhch-hhchhcCCCc
Confidence 45664444 4599999663
No 13
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=31.64 E-value=94 Score=25.39 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=36.6
Q ss_pred eceEEEEEEEec--CCCCeEEEEEeEE-------EeeceeeeEEeeeeeEEEEcCCCCCCCCCCEEEEe
Q 032281 53 RGRILAGTCHSA--KMNRTIIVRRNYL-------HFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 112 (144)
Q Consensus 53 rg~il~G~VvS~--KM~KTvvV~v~~~-------~~~pkY~K~~kr~kk~~vHd~p~~~~kvGD~V~I~ 112 (144)
+|.+..|+|.+- +-.-+|.+.-... .|.| ...+-+.+.+|+.+..++..||.|.|.
T Consensus 222 ~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 222 KGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEP----IFTKISSIRFGDEEFKEAKPGGLVAIG 286 (403)
T ss_dssp CCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEE----EEEEEEEEEETTEEESEECSSSCEEEE
T ss_pred cCcEEEEEEEeCEEecCCEEEEeCCccccccccccccc----ccEEEEEEEECCEEcCEEeCCCEEEEE
Confidence 677888888875 3444555543221 1222 234667777887677789999999984
No 14
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=30.82 E-value=37 Score=26.68 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=19.3
Q ss_pred eeeeeEEEEcCCCCCCCCCCEEEEee
Q 032281 88 KRHSNIPAHISPCFRVKEGDHVIIGQ 113 (144)
Q Consensus 88 kr~kk~~vHd~p~~~~kvGD~V~I~e 113 (144)
.|+-.+.++|+=...|++||.|+|.-
T Consensus 210 Prsi~v~l~~dLvd~~~PGDrV~vtG 235 (268)
T 2vl6_A 210 PRQLEIILEDDLVDSARPGDRVKVTG 235 (268)
T ss_dssp CCEEEEEEEGGGTTSSCTTCEEEEEE
T ss_pred CcEEEEEEccCccCcccCCCEEEEEE
Confidence 35556667776667899999999665
No 15
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=29.99 E-value=1.1e+02 Score=21.47 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=36.8
Q ss_pred ceEEEEEEEecCCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcC---------CCCCCCCCCEEE--EeeeecCCCeee
Q 032281 54 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHIS---------PCFRVKEGDHVI--IGQCRPLSKTVR 122 (144)
Q Consensus 54 g~il~G~VvS~KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~---------p~~~~kvGD~V~--I~ecRPlSKtK~ 122 (144)
|.++.|+|++.. +--+.|..+. .+ .-++|.+ +...+++||.|. |.+..+-.....
T Consensus 8 G~iv~G~V~~i~-~~G~FV~l~~-----~~--------~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~ 73 (130)
T 2k4k_A 8 GSVYTGKVTGLQ-AYGAFVALDE-----ET--------QGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKIS 73 (130)
T ss_dssp TCEEEEEEEEEE-TTEEEEEEET-----TE--------EEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEE
T ss_pred CCEEEEEEEEEe-CCeEEEEECC-----Cc--------EEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEE
Confidence 778999999873 4456666531 11 1123332 234599999976 556666566666
Q ss_pred EEEEEee
Q 032281 123 FNVLKVI 129 (144)
Q Consensus 123 f~V~~ii 129 (144)
+.+..+.
T Consensus 74 LSlk~~~ 80 (130)
T 2k4k_A 74 LSIRATQ 80 (130)
T ss_dssp EESHHHH
T ss_pred EEEeecc
Confidence 6555443
No 16
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=29.72 E-value=70 Score=22.48 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=36.4
Q ss_pred EEEEEEEecCCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCC----CCCCCCEEEEeeeecCC-Cee
Q 032281 56 ILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF----RVKEGDHVIIGQCRPLS-KTV 121 (144)
Q Consensus 56 il~G~VvS~KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~----~~kvGD~V~I~ecRPlS-KtK 121 (144)
...|+|+..-.+....|.-+- -..++||.|..+ -+..||.|++. -+|.. .+|
T Consensus 21 e~~g~V~~~lgn~~~~V~l~n-------------G~~~la~i~GKmRk~IwI~~GD~VlVe-~~~yd~~~K 77 (102)
T 1jt8_A 21 EILGIIEQMLGASRVRVRCLD-------------GKTRLGRIPGRLKNRIWVREGDVVIVK-PWEVQGDQK 77 (102)
T ss_dssp CEEEEEECSSCSSEEEEEEET-------------TEEEEEECCHHHHHHHCCCSCEEEEEC-CBCCTTSEE
T ss_pred EEEEEEEEEcCCCEEEEEECC-------------CCEEEEEEcccceeeEEecCCCEEEEE-eccCCCCce
Confidence 468999999888888776542 124668874333 38899999976 55666 666
No 17
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=27.08 E-value=46 Score=26.45 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=19.6
Q ss_pred eeeeeEEEEcCCCCCCCCCCEEEEeee
Q 032281 88 KRHSNIPAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 88 kr~kk~~vHd~p~~~~kvGD~V~I~ec 114 (144)
.|+-.+.++|+=...|++||.|.|.-.
T Consensus 197 Prsi~V~l~~dLvd~~~PGDrV~vtGI 223 (279)
T 1ltl_A 197 PRQITVVLEDDLVDTLTPGDIVRVTGT 223 (279)
T ss_dssp CCEEEEEEEGGGTTCCCTTCEEEEEEE
T ss_pred CeEEEEEEcccccCccCCCCEEEEEEE
Confidence 355566677755668999999997653
No 18
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=26.42 E-value=40 Score=19.82 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=14.9
Q ss_pred EEEcCCCCCCCCCCEEEEee
Q 032281 94 PAHISPCFRVKEGDHVIIGQ 113 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~e 113 (144)
.+.++....++.||+|.|.+
T Consensus 12 ~~~~~~eLs~~~Gd~i~v~~ 31 (60)
T 2v1q_A 12 MAESQDELTIKSGDKVYILD 31 (60)
T ss_dssp CCCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCCCccCCCCCEEEEEe
Confidence 34444556799999999977
No 19
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=26.29 E-value=1e+02 Score=22.63 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=21.3
Q ss_pred EEeeeeeEEEEcCCCCCCCCCCEEEEeee--e----cCCCeeeEEEEEeeec
Q 032281 86 YEKRHSNIPAHISPCFRVKEGDHVIIGQC--R----PLSKTVRFNVLKVIPA 131 (144)
Q Consensus 86 ~~kr~kk~~vHd~p~~~~kvGD~V~I~ec--R----PlSKtK~f~V~~ii~~ 131 (144)
+..++.+.++=| ||.|-|++. . .-+||.+|.+..|+..
T Consensus 24 ~~~~~ER~L~ID--------GdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~ 67 (121)
T 3ulb_A 24 FINKHERTLAID--------GDYIYIVPPEGRIHWHDNVKTKSLHISQVVLV 67 (121)
T ss_dssp EEEEEEEEEEEE--------TTEEEEECCC-------CCCCEEEEGGGEEEE
T ss_pred ccccccEEEEEc--------CceEEEecCCCCcccccCCcEEEEEEeeEEEE
Confidence 444555555555 777777653 1 1357777766666554
No 20
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=25.28 E-value=32 Score=20.03 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=14.9
Q ss_pred EEcCCCCCCCCCCEEEEeeee
Q 032281 95 AHISPCFRVKEGDHVIIGQCR 115 (144)
Q Consensus 95 vHd~p~~~~kvGD~V~I~ecR 115 (144)
+.++.....+.||+|.|.+..
T Consensus 11 ~~~~~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 11 AQGDDEISIDPGDIITVIRGD 31 (54)
T ss_dssp CCSTTBCCBCTTCEEEEEECC
T ss_pred cCCCCCccCCCCCEEEEEEec
Confidence 334345678999999987743
No 21
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=24.69 E-value=33 Score=20.15 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=15.8
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 032281 93 IPAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 93 ~~vHd~p~~~~kvGD~V~I~ec 114 (144)
|.+.++....++.||+|.|.+.
T Consensus 12 y~~~~~~eLs~~~Gd~i~v~~~ 33 (58)
T 2drm_A 12 YDAQTGDELTFKEGDTIIVHQK 33 (58)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCcCCCCCCEEEEEEe
Confidence 3344445567999999999875
No 22
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=24.65 E-value=33 Score=20.27 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=14.8
Q ss_pred EEcCCCCCCCCCCEEEEeee
Q 032281 95 AHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 95 vHd~p~~~~kvGD~V~I~ec 114 (144)
+.++.....+.||+|.|.+.
T Consensus 11 ~~~~~eLs~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 11 AAEDNELTFVENDKIINIEF 30 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCcccCCCCEEEEEEe
Confidence 34444567999999999874
No 23
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=24.50 E-value=37 Score=20.39 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=16.6
Q ss_pred EEEEcCCCCCCCCCCEEEEeeee
Q 032281 93 IPAHISPCFRVKEGDHVIIGQCR 115 (144)
Q Consensus 93 ~~vHd~p~~~~kvGD~V~I~ecR 115 (144)
|.+.++....++.||+|.|.+..
T Consensus 16 y~~~~~~eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 16 YDGIHPDDLSFKKGEKMKVLEEH 38 (65)
T ss_dssp BCCCSSSCCCBCTTCEEEEEEEC
T ss_pred ECCcCCCcCCCCCCCEEEEEEcC
Confidence 33444456679999999998764
No 24
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=24.43 E-value=30 Score=21.77 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=15.9
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 032281 93 IPAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 93 ~~vHd~p~~~~kvGD~V~I~ec 114 (144)
|.+.++....++.||+|.|.+.
T Consensus 15 y~a~~~~ELs~~~Gd~i~v~~~ 36 (65)
T 2lj0_A 15 YIPQNDDELELRDGDIVDVMEK 36 (65)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEE
T ss_pred ECCCCcCCcCCCCCCEEEEeEe
Confidence 3444445668999999998764
No 25
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=24.27 E-value=34 Score=20.22 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=14.8
Q ss_pred EEcCCCCCCCCCCEEEEeee
Q 032281 95 AHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 95 vHd~p~~~~kvGD~V~I~ec 114 (144)
+.++.....+.||+|.|.+.
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 2bz8_A 12 AQHDDELTISVGEIITNIRK 31 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEEC
T ss_pred CCCcCEeeECCCCEEEEEEe
Confidence 33444567999999999875
No 26
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=24.15 E-value=34 Score=25.98 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=29.7
Q ss_pred eceEEEEEEEec--CCCCeEEEEEeEEEeeceeeeEEeeeeeEEEEcCCCCCCCCCCEEEE
Q 032281 53 RGRILAGTCHSA--KMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVII 111 (144)
Q Consensus 53 rg~il~G~VvS~--KM~KTvvV~v~~~~~~pkY~K~~kr~kk~~vHd~p~~~~kvGD~V~I 111 (144)
.|.+..|+|.+- +-.-++.+. |- ....+-+.+..|+.+..++..||.|.|
T Consensus 18 ~G~v~~G~v~~G~i~~Gd~v~i~-------P~--~~~~~V~~I~~~~~~~~~A~aGd~V~l 69 (204)
T 3e1y_E 18 MGTVVLGKLESGSICKGQQLVMM-------PN--KHNVEVLGILSDDVETDTVAPGENLKI 69 (204)
T ss_dssp SSEEEEEECCBSCEESSCCEEET-------TT--TEEEEEEEECSSSSCBSEECTTSEEEE
T ss_pred CCEEEEEEEecCEEECCCEEEEC-------CC--CCEEEEEEEEECCEEeEEECCCCEEEE
Confidence 477777777764 223333332 11 122355666677756667889998887
No 27
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B*
Probab=24.14 E-value=20 Score=26.82 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.7
Q ss_pred eeeecccccCCcccccccccCcCCCce
Q 032281 21 WKSIGLGFKTPREAIEGTYIDKKCPFT 47 (144)
Q Consensus 21 ~~~igl~~k~P~~~~~~~y~D~kcPf~ 47 (144)
++++|+|+..|++ .+..|=...|||.
T Consensus 51 f~dLGwg~~spe~-y~a~yC~G~C~~~ 76 (135)
T 1agq_A 51 VTDLGLGYETKEE-LIFRYCSGSCEAA 76 (135)
T ss_dssp GGGGCSSCCCCCE-EEEEEEESCCCSC
T ss_pred HHHhCCCccCcCe-eEeeeeeeeCCCC
Confidence 4799999988877 6678888899994
No 28
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=23.63 E-value=33 Score=20.58 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=14.2
Q ss_pred EEcCCCCCCCCCCEEEEeee
Q 032281 95 AHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 95 vHd~p~~~~kvGD~V~I~ec 114 (144)
+.++.....+.||+|.|.+.
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 14 PRHEDELELEVDDPLLVELQ 33 (62)
T ss_dssp CSSTTBCCBCTTCEEEEEEE
T ss_pred ccCcCcCcCCCCCEEEEEEe
Confidence 33444557899999999653
No 29
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=23.48 E-value=48 Score=19.46 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=15.9
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 032281 93 IPAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 93 ~~vHd~p~~~~kvGD~V~I~ec 114 (144)
|.+.++.....+.||+|.|.+.
T Consensus 10 y~~~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 1uti_A 10 FEALEEDELGFRSGEVVEVLDS 31 (58)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCCCCEEEEEEE
Confidence 3444445567999999999875
No 30
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=23.40 E-value=27 Score=20.54 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=15.7
Q ss_pred EEEcCCCCCCCCCCEEEEeeee
Q 032281 94 PAHISPCFRVKEGDHVIIGQCR 115 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~ecR 115 (144)
.+.++....++.||+|.|.+..
T Consensus 11 ~~~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuu_A 11 VQKDDDEITITPGDKISLVARD 32 (58)
T ss_dssp CCCSTTBCCBCTTCCEEEEECC
T ss_pred CCcCCCcccCCCCCEEEEeEcC
Confidence 3444455679999999998754
No 31
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=22.99 E-value=35 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=15.4
Q ss_pred EEEcCCCCCCCCCCEEEEeee
Q 032281 94 PAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~ec 114 (144)
.+.++....++.||+|.|.+.
T Consensus 12 ~~~~~~eLs~~~Gd~i~v~~~ 32 (58)
T 1sem_A 12 NPQESGELAFKRGDVITLINK 32 (58)
T ss_dssp CCSSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCCcCCCCCCEEEEEEe
Confidence 344444567999999999875
No 32
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.88 E-value=52 Score=19.60 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=16.1
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 032281 93 IPAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 93 ~~vHd~p~~~~kvGD~V~I~ec 114 (144)
|.+.++....++.||+|.|.+.
T Consensus 14 y~~~~~~eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 14 YEATQPEDLEFQEGDIILVLSK 35 (62)
T ss_dssp BCCCSSSBCCBCSSCEEEEEEE
T ss_pred CCcCCCCCccCCCCCEEEEEEe
Confidence 3444445567899999999875
No 33
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=22.69 E-value=37 Score=20.20 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=15.7
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 032281 93 IPAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 93 ~~vHd~p~~~~kvGD~V~I~ec 114 (144)
|.+.++....++.||+|.|-+.
T Consensus 10 y~~~~~~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 10 FVARNSSELSVMKDDVLEILDD 31 (60)
T ss_dssp BCCSSTTBCCBCTTCEEEECGG
T ss_pred CCCCCCCcccCCCCCEEEEEEc
Confidence 3344444567899999999875
No 34
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=22.36 E-value=53 Score=19.29 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=15.9
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 032281 93 IPAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 93 ~~vHd~p~~~~kvGD~V~I~ec 114 (144)
|.+.++....++.||+|.|.+.
T Consensus 12 y~~~~~~eLs~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 12 FEPRTPDELYFEEGDIIYITDM 33 (58)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCccCCCCCEEEEEEe
Confidence 3344445567999999999875
No 35
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=22.34 E-value=63 Score=18.82 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=15.1
Q ss_pred EEEcCCCCCCCCCCEEEEeee
Q 032281 94 PAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~ec 114 (144)
.+.++....++.||+|.|.+.
T Consensus 11 ~~~~~~eLs~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 11 EPENDNELRLAEGDIVFISYK 31 (59)
T ss_dssp CCCSTTBCCBCTTCEEEEEEE
T ss_pred CCCCCCCcCCCCCCEEEEEEc
Confidence 344444567999999999775
No 36
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=22.33 E-value=39 Score=19.67 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=15.2
Q ss_pred EEEcCCCCCCCCCCEEEEeee
Q 032281 94 PAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~ec 114 (144)
.+.++....++.||+|.|.+.
T Consensus 11 ~~~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 4e6r_A 11 VAEREDELSLVXGSRVTVMEX 31 (58)
T ss_dssp CCCSTTBCCBCTTCEEEEEEE
T ss_pred CCCCCCEeeEeCCCEEEEeEc
Confidence 344445568999999998764
No 37
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=22.28 E-value=36 Score=20.29 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=15.4
Q ss_pred EEEcCCCCCCCCCCEEEEeee
Q 032281 94 PAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~ec 114 (144)
.+.++.....+.||+|.|.+.
T Consensus 14 ~~~~~~eLs~~~Gd~i~v~~~ 34 (60)
T 1w70_A 14 TGNSKLELNFKAGDVIFLLSR 34 (60)
T ss_dssp CCSSTTBCCBCTTCEEEEEEE
T ss_pred CcCCCCCccCCCCCEEEEEEe
Confidence 344444567899999999875
No 38
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=21.87 E-value=40 Score=19.95 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=15.9
Q ss_pred EEEcCCCCCCCCCCEEEEeeee
Q 032281 94 PAHISPCFRVKEGDHVIIGQCR 115 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~ecR 115 (144)
.+.++.....+.||+|.|.+..
T Consensus 13 ~~~~~~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 13 AGEESGDLPFRKGDVITILKKS 34 (60)
T ss_dssp CCCSTTBCCBCTTCEEEEEECC
T ss_pred CcCCcCEeeEcCCCEEEEEEeC
Confidence 3444445678999999998764
No 39
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=21.71 E-value=1.2e+02 Score=21.84 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=25.4
Q ss_pred CCCCCCEEEEeeeecCCCeeeEEEEEeeec
Q 032281 102 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPA 131 (144)
Q Consensus 102 ~~kvGD~V~I~ecRPlSKtK~f~V~~ii~~ 131 (144)
.++-||+|...-..|-..-|.|.+++|..-
T Consensus 90 ~lr~GD~V~g~vr~~~~~ek~~~l~~v~~v 119 (130)
T 1a62_A 90 NLRTGDTISGKIRPPKEGERYFALLKVNEV 119 (130)
T ss_dssp TCCTTCEEEEEEECCCTTCCSEEEEEEEEE
T ss_pred CCCCCCEEEEEEeCCCCCCcccceeEEEeE
Confidence 689999999887788888888999998653
No 40
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=21.57 E-value=58 Score=19.35 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=14.7
Q ss_pred EEcCCCCCCCCCCEEEEeee
Q 032281 95 AHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 95 vHd~p~~~~kvGD~V~I~ec 114 (144)
+-++....++.||+|.|.+.
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~ 31 (65)
T 2oaw_A 12 EKSPREVTMKKGDILTLLNS 31 (65)
T ss_dssp CSSTTBCCBCTTCEEEEEEC
T ss_pred ccCCCCCCCCCCCEEEEEEc
Confidence 33444567899999999874
No 41
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=21.51 E-value=41 Score=20.11 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=15.5
Q ss_pred EEEcCCCCCCCCCCEEEEeee
Q 032281 94 PAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~ec 114 (144)
.+.++.....+.||+|.|.+.
T Consensus 16 ~~~~~~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 16 EPSHDGDLGFEKGEQLRILEQ 36 (62)
T ss_dssp CCCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCCcCCCCCCEEEEEEc
Confidence 344444567899999999886
No 42
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=21.49 E-value=38 Score=20.10 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=16.1
Q ss_pred EEEEcCCCCCCCCCCEEEEeeee
Q 032281 93 IPAHISPCFRVKEGDHVIIGQCR 115 (144)
Q Consensus 93 ~~vHd~p~~~~kvGD~V~I~ecR 115 (144)
|.+.++.....+.||+|.|.+..
T Consensus 14 y~~~~~~eLs~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 14 YDAQDTDELSFNANDIIDIIKED 36 (60)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEEC
T ss_pred CCcCCcCCcCCCCCCEEEEEEec
Confidence 33444445679999999998753
No 43
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=21.45 E-value=40 Score=20.55 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=15.0
Q ss_pred EEcCCCCCCCCCCEEEEeee
Q 032281 95 AHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 95 vHd~p~~~~kvGD~V~I~ec 114 (144)
+.++....++.||+|.|.+.
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 2djq_A 18 GKNPGDLKFNKGDVILLRRQ 37 (68)
T ss_dssp SCCTTCCCCCTTCEEEEEEC
T ss_pred CCCcCCccCCCCCEEEEEEe
Confidence 44445667999999999765
No 44
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=21.41 E-value=39 Score=20.15 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=15.3
Q ss_pred EEEcCCCCCCCCCCEEEEeee
Q 032281 94 PAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~ec 114 (144)
.+.++.....+.||+|.|.+.
T Consensus 16 ~~~~~~eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 16 VGRSARELSFKKGASLLLYHR 36 (60)
T ss_dssp CCSSTTBCCBCTTCEEEEEEE
T ss_pred CcCCcCCcCCCCCCEEEEEEe
Confidence 344444567999999999875
No 45
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Probab=21.16 E-value=23 Score=25.46 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=21.2
Q ss_pred eeeecccccCCcccccccccCcCCCce
Q 032281 21 WKSIGLGFKTPREAIEGTYIDKKCPFT 47 (144)
Q Consensus 21 ~~~igl~~k~P~~~~~~~y~D~kcPf~ 47 (144)
++++|+|+..|++ .+..|=.-.|||.
T Consensus 25 f~dLGw~~~ap~~-y~a~yC~G~C~~~ 50 (113)
T 2ask_A 25 VRALGLGHRSDEL-VRFRFCSGSCRRA 50 (113)
T ss_dssp GGGGSSSCCCCCE-EEEEEEECBCGGG
T ss_pred HHHcCCCccCcCe-eeeeeeeeeCCCC
Confidence 4799999988875 6768888889993
No 46
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=20.56 E-value=59 Score=18.95 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=15.8
Q ss_pred EEEEcCCCCCCCCCCEEEEeee
Q 032281 93 IPAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 93 ~~vHd~p~~~~kvGD~V~I~ec 114 (144)
|.+.++....++.||+|.|.+.
T Consensus 11 y~~~~~~eLs~~~Gd~i~v~~~ 32 (58)
T 2vwf_A 11 FDPQEDGELGFRRGDFIHVMDN 32 (58)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEC
T ss_pred ECCCCcCCcCCCCCCEEEEEEc
Confidence 3344445567899999999875
No 47
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=20.46 E-value=56 Score=19.06 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=15.2
Q ss_pred EEEcCCCCCCCCCCEEEEeee
Q 032281 94 PAHISPCFRVKEGDHVIIGQC 114 (144)
Q Consensus 94 ~vHd~p~~~~kvGD~V~I~ec 114 (144)
.+.++.....+.||+|.|.+.
T Consensus 11 ~~~~~~eLs~~~Gd~i~v~~~ 31 (57)
T 1cka_A 11 NGNDEEDLPFKKGDILRIRDK 31 (57)
T ss_dssp CCSSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCCCCCCEEEEEEe
Confidence 344444567899999999874
No 48
>3j20_X 30S ribosomal protein S28E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.31 E-value=42 Score=22.62 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=12.2
Q ss_pred CCCCCCEEEEeeee
Q 032281 102 RVKEGDHVIIGQCR 115 (144)
Q Consensus 102 ~~kvGD~V~I~ecR 115 (144)
-+++||++.+.||-
T Consensus 48 PVR~GDIl~L~EtE 61 (71)
T 3j20_X 48 PVRIGDILILRETE 61 (71)
T ss_dssp CCCTTCEEEESCSS
T ss_pred CcccCcEEEeehhh
Confidence 39999999999984
No 49
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=20.25 E-value=41 Score=22.43 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=12.8
Q ss_pred CCCCCCCEEEEeeee
Q 032281 101 FRVKEGDHVIIGQCR 115 (144)
Q Consensus 101 ~~~kvGD~V~I~ecR 115 (144)
--+++||++.+.||-
T Consensus 46 GPVR~GDIl~L~EtE 60 (67)
T 3u5c_c 46 GPVRENDILVLMESE 60 (67)
T ss_dssp SCCCTTCEEEESSSS
T ss_pred CCcccCCEEEEehhh
Confidence 359999999999984
No 50
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=20.09 E-value=45 Score=20.30 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=15.2
Q ss_pred EEcCCCCCCCCCCEEEEeeee
Q 032281 95 AHISPCFRVKEGDHVIIGQCR 115 (144)
Q Consensus 95 vHd~p~~~~kvGD~V~I~ecR 115 (144)
+.++....++.||+|.|.+..
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~~~ 38 (70)
T 2cuc_A 18 AHRPEELDLQKGEGIRVLGKY 38 (70)
T ss_dssp CCSTTBCCBCTTCEEEEEEEE
T ss_pred cCCCCcCCCCCCCEEEEEEec
Confidence 334345679999999998753
Done!