RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032281
         (144 letters)



>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 100

 Score = 86.7 bits (215), Expect = 8e-24
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 55  RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 114
           ++L G   S KM +T+ V          Y +  KR     AH  P  + K GD V I + 
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAH-DPEEKYKLGDVVEIIES 61

Query: 115 RPLSKTVRFNVLKVI 129
           RP+SK  RF VL+++
Sbjct: 62  RPISKRKRFRVLRLV 76


>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli
           [TaxId: 562]}
          Length = 78

 Score = 80.5 bits (199), Expect = 1e-21
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 55  RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 114
           R L G   S KM ++I+V          Y ++ KR + +  H         GD V I +C
Sbjct: 1   RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENN-ECGIGDVVEIREC 59

Query: 115 RPLSKTVRFNVLKVI 129
           RPLSKT  + +++V+
Sbjct: 60  RPLSKTKSWTLVRVV 74


>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 81

 Score = 79.3 bits (196), Expect = 4e-21
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 53  RGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 112
           + ++  G   S KM++TI V          Y +  K      AH       K GD V I 
Sbjct: 1   QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHN-EAKVGDIVKIM 59

Query: 113 QCRPLSKTVRFNVLKVI 129
           + RPLS T RF +++++
Sbjct: 60  ETRPLSATKRFRLVEIV 76


>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 132

 Score = 27.0 bits (59), Expect = 0.67
 Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 55  RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSN--IPAHISPCF 101
            I+  T   +   R   VRR Y  F    +   K  S    P  + P  
Sbjct: 32  EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHL 80


>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus
           faecium, VAT(D) [TaxId: 1352]}
          Length = 203

 Score = 24.4 bits (52), Expect = 6.1
 Identities = 11/98 (11%), Positives = 26/98 (26%)

Query: 35  IEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIP 94
            +   +         + I      G   +  MN          +    +    ++H    
Sbjct: 46  FDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKL 105

Query: 95  AHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG 132
             +        G+ V IG+   +   V+     ++ A 
Sbjct: 106 DQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAAN 143


>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 134

 Score = 23.7 bits (51), Expect = 8.8
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 88  KRHSNIPAHISPCFRVKEGDHVII 111
           K  +N+  H +P F      + I+
Sbjct: 36  KDSNNLCLHFNPRFNAHGDANTIV 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 568,162
Number of extensions: 25963
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 14
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.8 bits)