BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032282
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
          Length = 151

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 83/144 (57%), Gaps = 12/144 (8%)

Query: 3   GDFFGYPFRRFFMSPPVFREWSGSTAL-----MDWLESPSAHIFKIDVPGYSRENIKVQI 57
            D +  PF  F    P        TA      MDW E+P AH+FK D+PG  +E +KV++
Sbjct: 14  ADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEV 73

Query: 58  EDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDN 117
           EDGN+L + GE  K+KE+ N K   WH  ER +   G F R   L E+ K++++KA ++N
Sbjct: 74  EDGNVLVVSGERTKEKEDKNDK---WHRVERSS---GKFVRRFRLLEDAKVEEVKAGLEN 127

Query: 118 GVLTVIVPKDANHKKSSVRNINIT 141
           GVLTV VPK A  KK  V+ I I+
Sbjct: 128 GVLTVTVPK-AEVKKPEVKAIQIS 150


>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
          Length = 101

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 6/101 (5%)

Query: 28  ALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAE 87
           A MDW E+P AH+FK D+PG  +E +KV++EDGN+L + GE  K+KE+ N K   WH  E
Sbjct: 2   ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDK---WHRVE 58

Query: 88  RRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDA 128
           R +   G F R   L E+ K++++KA ++NGVLTV VPK A
Sbjct: 59  RSS---GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAA 96


>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
          Length = 93

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 6/99 (6%)

Query: 28  ALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAE 87
           A MDW E+P AH+FK D+PG  +E +KV++EDGN+L + GE  K+KE+ N K   WH  E
Sbjct: 1   ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDK---WHRVE 57

Query: 88  RRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPK 126
           R +   G F R   L E+ K++++KA ++NGVLTV VPK
Sbjct: 58  RSS---GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93


>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
          Length = 100

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 30  MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERR 89
           +D  E  +  +   D+PG     I+VQ++ G IL I GE    K E++T+   +   ERR
Sbjct: 7   VDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGE---RKSESSTETERFSRIERR 62

Query: 90  AGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPK 126
            G    F R   LP++   D I A   NGVL + +PK
Sbjct: 63  YGS---FHRRFALPDSADADGITAAGRNGVLEIRIPK 96


>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
 pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
          Length = 103

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 30  MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERR 89
           +D  E  +  +   D+PG     I+VQ++ G IL I GE    K E++T+   +   ERR
Sbjct: 10  VDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGE---RKSESSTETERFSRIERR 65

Query: 90  AGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPK 126
            G    F R   LP++   D I A   NGVL + +PK
Sbjct: 66  YGS---FHRRFALPDSADADGITAAGRNGVLEIRIPK 99


>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
 pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
          Length = 161

 Score = 33.5 bits (75), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 95  DFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINI 140
           +  R I+LP  VK +   A  +NGVL+VI+PK  +  K   + INI
Sbjct: 118 EIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK---KGINI 160


>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
          Length = 147

 Score = 33.5 bits (75), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 95  DFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINI 140
           +  R I+LP  VK +   A  +NGVL+VI+PK  +  K   + INI
Sbjct: 104 EIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK---KGINI 146


>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
           I120f And I122f In The Form I Crystal
 pdb|3AAB|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
           I120f And I122f In The Form I Crystal
 pdb|3AAC|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
           I120f And I122f In The Form Ii Crystal
 pdb|3AAC|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
           I120f And I122f In The Form Ii Crystal
          Length = 123

 Score = 33.1 bits (74), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 30  MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERR 89
           +D  E     +   D+ G+++E IK ++   N L I      + E   T+  V ++ +R 
Sbjct: 27  VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELII------EAEREITEPGVKYLTQRP 80

Query: 90  AGGRGDFSREIELPENVKLD-QIKAHVDNGVLTVIVP 125
              R    + I LP NV  D +I    +NGVLT+ +P
Sbjct: 81  KYVR----KVIRLPYNVAKDAEISGKYENGVLTIRIP 113


>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans
          Length = 102

 Score = 32.7 bits (73), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 27  TALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVA 86
           T   DW ++ +     +DVPG     + +  EDG  L + GE    +    ++       
Sbjct: 6   TPAADWRDAGTHLDLLLDVPGVDAGTLALA-EDGGQLTVSGERPGTEHLLRSE------- 57

Query: 87  ERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTV 122
             R  GR  F RE+  PE V+     A +  GVLTV
Sbjct: 58  --RPSGR--FVRELAFPEPVRPASGVASLAGGVLTV 89


>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant
 pdb|3VQL|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant
 pdb|3VQM|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|C Chain C, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|D Chain D, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|E Chain E, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|F Chain F, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|G Chain G, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|H Chain H, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|I Chain I, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|J Chain J, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|K Chain K, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|L Chain L, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|M Chain M, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
 pdb|3VQM|N Chain N, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
           Variant With C-Terminal Peptide
          Length = 115

 Score = 32.7 bits (73), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 30  MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERR 89
           +D  E     +   D+ G+++E IK ++   N L I      + E   T+  V ++ +R 
Sbjct: 27  VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELII------EAEREITEPGVKYLTQRP 80

Query: 90  AGGRGDFSREIELPENVKLD-QIKAHVDNGVLTVIVP 125
              R    + I LP NV  D +I    +NGVLT+ +P
Sbjct: 81  KYVR----KVIRLPYNVAKDAEISGKYENGVLTIRIP 113


>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|B Chain B, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|C Chain C, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|D Chain D, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|E Chain E, Small Heat Shock Protein Hsp14.0 Of Wild Type
 pdb|3VQK|F Chain F, Small Heat Shock Protein Hsp14.0 Of Wild Type
          Length = 123

 Score = 32.7 bits (73), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 30  MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERR 89
           +D  E     +   D+ G+++E IK ++   N L I      + E   T+  V ++ +R 
Sbjct: 27  VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELII------EAEREITEPGVKYLTQRP 80

Query: 90  AGGRGDFSREIELPENVKLD-QIKAHVDNGVLTVIVP 125
              R    + I LP NV  D +I    +NGVLT+ +P
Sbjct: 81  KYVR----KVIRLPYNVAKDAEISGKYENGVLTIRIP 113


>pdb|3TH6|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
           Rhipicephalus (Boophilus) Microplus.
 pdb|3TH6|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
           Rhipicephalus (Boophilus) Microplus
          Length = 249

 Score = 29.6 bits (65), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 15  MSPPVFREWSGSTALMDWLESPSAHIFKIDVPGYSRENIKVQIEDG-NILRIIGEGAKDK 73
           +SP + ++  G   ++    S   H+FK D      E IK  +E G N++  IGE  +D+
Sbjct: 78  ISPGMIKDCGGQWVILG--HSERRHVFKED-DVLIGEKIKHALESGLNVIACIGELLEDR 134

Query: 74  EEANTKETVWHVAERRAGGRGDFSREI 100
           E   T+E  +   +  A    D+S+ +
Sbjct: 135 EAGRTEEVCFRQIKHIASNVKDWSKVV 161


>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
           Pyrococcus Horikoshii
 pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
           Pyrococcus Horikoshii
          Length = 343

 Score = 29.3 bits (64), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 8   YPFRRFFMSPPVFREWSGSTALMDWLESPSAHIFK--IDVPGYSRENIKVQIE 58
           Y  + FF++PPV  E+S     + W E     I K   D   +S E +K  IE
Sbjct: 273 YAIKEFFLNPPVTNEYS-----LSWKEPDEEGILKFLCDEHNFSEERVKNGIE 320


>pdb|3HX6|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pily1
           C-Terminal Domain
 pdb|3HX6|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pily1
           C-Terminal Domain
          Length = 570

 Score = 28.1 bits (61), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 83  WH---VAERRAGGRGDFSREIELPENVKL 108
           WH   +   RAGG+G F+ ++  P N+KL
Sbjct: 151 WHTVLIGSLRAGGKGLFALDVTDPANIKL 179


>pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima:
          Vt1, A Nesgc Target Protein
          Length = 172

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 50 RENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAG 91
          REN+  Q   G+++RI+GEG   K   N KE +  + ++  G
Sbjct: 14 RENLYFQ---GHMIRILGEGKGSKLLENLKEKLEEIVKKEIG 52


>pdb|2ZG2|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Native
          Siglec-5
          Length = 216

 Score = 26.9 bits (58), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 6  FGYPFRRFFMSPPVFREW 23
          F YP+R ++ SPP++  W
Sbjct: 25 FSYPWRSWYSSPPLYVYW 42


>pdb|2ZG1|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Siglec-5
          In Complex With 6'-Sialyllactose
 pdb|2ZG3|A Chain A, Crystal Structure Of Two N-terminal Domains Of Native
          Siglec-5 In Complex With 3'-sialyllactose
          Length = 214

 Score = 26.9 bits (58), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 6  FGYPFRRFFMSPPVFREW 23
          F YP+R ++ SPP++  W
Sbjct: 24 FSYPWRSWYSSPPLYVYW 41


>pdb|4FD0|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
           (Baccac_03700) From Bacteroides Caccae Atcc 43185 At
           2.07 A Resolution
          Length = 404

 Score = 26.2 bits (56), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 98  REIELPENVKLDQIKAHVDNGVLTVIVP 125
           + IE+PENV+   ++A  ++G+ TV +P
Sbjct: 232 KTIEIPENVRTIGLEAFRESGITTVKLP 259


>pdb|2AB1|A Chain A, X-Ray Structure Of Gene Product From Homo Sapiens
          Hs.95870
 pdb|2AB1|B Chain B, X-Ray Structure Of Gene Product From Homo Sapiens
          Hs.95870
 pdb|2Q4Q|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
          Gene Product From Homo Sapiens Hs.95870
 pdb|2Q4Q|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
          Gene Product From Homo Sapiens Hs.95870
          Length = 122

 Score = 25.8 bits (55), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 23 WSGSTALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKD 72
          W G +   DW E+ + H      PG    ++K  +E G    +IG G  +
Sbjct: 29 WPGGSRTWDWRETGTEH-----SPGVQPADVKEVVEKGVQTLVIGRGXSE 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,686,952
Number of Sequences: 62578
Number of extensions: 194604
Number of successful extensions: 555
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 28
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)