Query 032282
Match_columns 144
No_of_seqs 112 out of 1088
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 100.0 2.9E-27 6.3E-32 166.9 12.8 104 26-141 33-137 (137)
2 COG0071 IbpA Molecular chapero 100.0 4.6E-27 1E-31 167.8 14.0 109 25-141 38-146 (146)
3 PRK11597 heat shock chaperone 99.9 6.9E-27 1.5E-31 165.7 12.3 107 24-142 29-136 (142)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.8E-26 3.8E-31 152.8 11.9 92 29-126 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 6.9E-25 1.5E-29 145.3 11.5 93 28-126 1-93 (93)
6 PF00011 HSP20: Hsp20/alpha cr 99.9 3.6E-24 7.8E-29 143.7 13.0 102 31-141 1-102 (102)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 3.1E-23 6.8E-28 136.8 12.1 89 28-126 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 2.5E-22 5.3E-27 131.5 11.0 82 31-126 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 8E-22 1.7E-26 128.3 10.9 82 31-126 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 7.7E-22 1.7E-26 128.6 9.8 82 32-127 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 5.2E-22 1.1E-26 128.4 8.9 79 31-126 2-81 (81)
12 cd06475 ACD_HspB1_like Alpha c 99.9 3.1E-21 6.7E-26 126.3 10.1 82 30-125 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.9 3.4E-21 7.4E-26 125.2 9.7 81 32-126 2-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.9 6.8E-21 1.5E-25 124.9 10.1 83 34-126 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 1.6E-20 3.4E-25 121.9 11.2 88 31-126 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.8 2.2E-20 4.8E-25 122.3 8.6 80 35-125 6-86 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 8E-20 1.7E-24 118.7 10.0 79 33-125 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 4.1E-20 8.9E-25 120.1 8.0 77 36-126 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.7 3.1E-18 6.8E-23 127.6 7.6 114 24-142 81-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 1.9E-17 4.2E-22 109.1 8.9 81 31-125 9-90 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 1.8E-16 3.9E-21 115.8 12.7 101 28-143 63-164 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 3.8E-14 8.3E-19 88.9 9.7 80 32-126 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 5.1E-11 1.1E-15 75.9 9.1 69 32-127 1-69 (78)
24 PF05455 GvpH: GvpH; InterPro 99.1 1.6E-09 3.4E-14 79.0 10.4 77 25-127 89-168 (177)
25 cd06463 p23_like Proteins cont 99.1 2.3E-09 5.1E-14 68.2 9.7 74 32-127 1-74 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 2.6E-08 5.7E-13 63.9 8.2 75 31-127 1-75 (84)
27 PF04969 CS: CS domain; Inter 98.7 1.5E-06 3.3E-11 54.5 11.8 77 28-126 1-79 (79)
28 PF08190 PIH1: pre-RNA process 98.2 7.4E-06 1.6E-10 65.0 9.0 65 36-125 260-327 (328)
29 cd06465 p23_hB-ind1_like p23_l 98.2 2.9E-05 6.2E-10 52.4 10.4 77 28-127 1-77 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 98.1 3.7E-05 8E-10 49.5 8.7 75 31-127 1-75 (84)
31 cd06488 p23_melusin_like p23_l 97.9 0.00024 5.3E-09 46.1 10.0 77 29-127 2-78 (87)
32 cd06468 p23_CacyBP p23_like do 97.9 0.00042 9E-09 45.1 10.5 77 29-127 3-83 (92)
33 cd06467 p23_NUDC_like p23_like 97.8 0.00032 6.9E-09 44.9 9.0 72 31-127 2-75 (85)
34 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00065 1.4E-08 43.8 9.8 73 30-127 1-75 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.5 0.0022 4.8E-08 42.3 9.7 76 26-127 4-81 (93)
36 cd00237 p23 p23 binds heat sho 97.2 0.011 2.5E-07 39.8 10.6 76 28-127 2-77 (106)
37 PLN03088 SGT1, suppressor of 97.0 0.0055 1.2E-07 49.6 9.1 79 27-127 156-234 (356)
38 KOG1309 Suppressor of G2 allel 96.8 0.0076 1.6E-07 44.3 7.4 79 27-127 3-81 (196)
39 cd06495 p23_NUDCD3_like p23-li 96.0 0.21 4.6E-06 33.5 10.2 79 27-127 4-85 (102)
40 cd06492 p23_mNUDC_like p23-lik 96.0 0.13 2.9E-06 33.2 9.0 72 31-127 2-77 (87)
41 cd06490 p23_NCB5OR p23_like do 95.4 0.41 8.9E-06 30.9 10.7 74 30-127 1-78 (87)
42 KOG2265 Nuclear distribution p 88.3 4.4 9.5E-05 29.8 7.7 77 26-127 17-95 (179)
43 PF14913 DPCD: DPCD protein fa 88.2 6.4 0.00014 29.4 8.6 80 24-127 83-169 (194)
44 cd06482 ACD_HspB10 Alpha cryst 87.4 1.6 3.4E-05 28.3 4.5 35 92-127 6-40 (87)
45 cd06470 ACD_IbpA-B_like Alpha- 83.7 5.6 0.00012 25.5 5.9 33 94-127 11-43 (90)
46 cd06476 ACD_HspB2_like Alpha c 80.5 4.3 9.4E-05 25.9 4.3 33 94-127 7-39 (83)
47 cd06478 ACD_HspB4-5-6 Alpha-cr 79.5 5.5 0.00012 25.3 4.6 34 93-127 6-39 (83)
48 cd06477 ACD_HspB3_Like Alpha c 79.4 5 0.00011 25.7 4.3 33 94-127 7-39 (83)
49 cd06497 ACD_alphaA-crystallin_ 78.6 4.7 0.0001 25.8 4.1 34 93-127 9-42 (86)
50 PF08308 PEGA: PEGA domain; I 78.0 8.7 0.00019 23.2 5.0 43 28-70 25-68 (71)
51 PRK10743 heat shock protein Ib 78.0 12 0.00026 26.3 6.3 32 95-127 46-77 (137)
52 cd06526 metazoan_ACD Alpha-cry 77.3 5.4 0.00012 25.1 4.0 32 95-127 8-39 (83)
53 cd06471 ACD_LpsHSP_like Group 76.9 6.5 0.00014 25.1 4.4 34 93-127 9-42 (93)
54 cd06479 ACD_HspB7_like Alpha c 76.2 6.3 0.00014 25.1 4.1 34 93-127 7-40 (81)
55 KOG1667 Zn2+-binding protein M 76.0 22 0.00048 27.9 7.6 81 26-127 213-293 (320)
56 PF12992 DUF3876: Domain of un 75.8 10 0.00022 25.1 5.1 48 17-65 13-67 (95)
57 cd06472 ACD_ScHsp26_like Alpha 74.7 15 0.00033 23.4 5.8 34 93-127 8-42 (92)
58 PRK11597 heat shock chaperone 72.8 16 0.00035 25.8 5.8 32 95-127 44-75 (142)
59 cd06498 ACD_alphaB-crystallin_ 72.6 8.3 0.00018 24.6 4.0 33 94-127 7-39 (84)
60 cd06481 ACD_HspB9_like Alpha c 72.3 15 0.00033 23.5 5.2 33 94-127 7-39 (87)
61 cd06480 ACD_HspB8_like Alpha-c 71.5 11 0.00024 24.5 4.5 31 37-67 58-89 (91)
62 cd06475 ACD_HspB1_like Alpha c 70.2 13 0.00028 23.8 4.5 34 93-127 9-42 (86)
63 PF13349 DUF4097: Domain of un 68.0 38 0.00082 23.5 10.5 87 26-126 64-150 (166)
64 PF00011 HSP20: Hsp20/alpha cr 67.5 18 0.00039 23.2 5.0 34 93-127 6-39 (102)
65 KOG3158 HSP90 co-chaperone p23 65.9 28 0.0006 25.7 5.9 78 26-127 6-83 (180)
66 cd06464 ACD_sHsps-like Alpha-c 65.0 17 0.00037 22.3 4.3 33 94-127 7-39 (88)
67 cd06467 p23_NUDC_like p23_like 64.9 25 0.00054 21.7 5.1 32 94-125 8-39 (85)
68 PF01954 DUF104: Protein of un 61.9 8.6 0.00019 23.2 2.3 17 109-125 3-19 (60)
69 KOG3591 Alpha crystallins [Pos 61.4 13 0.00029 27.1 3.7 32 39-70 117-149 (173)
70 COG5091 SGT1 Suppressor of G2 57.1 7.8 0.00017 30.8 1.9 81 26-127 175-255 (368)
71 cd06494 p23_NUDCD2_like p23-li 56.2 38 0.00082 22.0 4.8 33 92-124 13-45 (93)
72 COG0071 IbpA Molecular chapero 54.8 38 0.00081 23.7 5.0 32 95-127 51-82 (146)
73 PF04972 BON: BON domain; Int 51.7 35 0.00075 19.9 3.8 24 46-70 12-35 (64)
74 CHL00140 rpl6 ribosomal protei 47.6 97 0.0021 22.6 6.4 44 50-125 12-55 (178)
75 PRK05518 rpl6p 50S ribosomal p 43.4 1.3E+02 0.0028 22.1 6.7 45 50-125 13-57 (180)
76 cd06493 p23_NUDCD1_like p23_NU 42.8 83 0.0018 19.6 5.0 32 94-125 8-39 (85)
77 TIGR03654 L6_bact ribosomal pr 38.2 1.6E+02 0.0034 21.5 6.7 44 50-125 11-54 (175)
78 cd00503 Frataxin Frataxin is a 35.8 43 0.00093 22.4 2.7 20 108-127 27-46 (105)
79 cd06492 p23_mNUDC_like p23-lik 35.7 1.2E+02 0.0025 19.3 4.9 33 93-125 7-41 (87)
80 PRK10568 periplasmic protein; 35.6 1.2E+02 0.0027 22.5 5.4 24 46-70 73-96 (203)
81 TIGR03653 arch_L6P archaeal ri 35.2 1.8E+02 0.0038 21.2 6.8 45 50-125 7-51 (170)
82 PRK05498 rplF 50S ribosomal pr 34.3 1.8E+02 0.004 21.1 6.3 44 50-125 12-55 (178)
83 PF14814 UB2H: Bifunctional tr 34.2 71 0.0015 20.2 3.4 43 79-124 29-73 (85)
84 PTZ00179 60S ribosomal protein 33.0 2E+02 0.0044 21.3 6.3 20 50-70 12-31 (189)
85 PF01491 Frataxin_Cyay: Fratax 32.3 68 0.0015 21.5 3.2 19 109-127 30-48 (109)
86 TIGR03421 FeS_CyaY iron donor 32.0 52 0.0011 21.9 2.6 18 110-127 26-43 (102)
87 PRK00446 cyaY frataxin-like pr 31.7 54 0.0012 21.9 2.6 18 110-127 28-45 (105)
88 cd02175 GH16_lichenase lichena 31.5 1.6E+02 0.0036 21.6 5.5 51 49-105 30-80 (212)
89 PTZ00027 60S ribosomal protein 31.5 2.2E+02 0.0047 21.1 6.3 48 49-125 12-59 (190)
90 PF15631 Imm-NTF2-2: NTF2 fold 31.4 1.3E+02 0.0028 18.5 5.7 42 25-66 19-63 (66)
91 PF08845 SymE_toxin: Toxin Sym 31.4 85 0.0018 18.6 3.2 23 43-66 33-56 (57)
92 KOG3413 Mitochondrial matrix p 30.7 25 0.00054 25.2 0.9 23 104-126 67-89 (156)
93 PF07076 DUF1344: Protein of u 29.8 59 0.0013 19.7 2.3 15 98-112 25-39 (61)
94 PF13620 CarboxypepD_reg: Carb 28.5 79 0.0017 19.0 2.9 29 37-65 48-77 (82)
95 PF03983 SHD1: SLA1 homology d 28.2 55 0.0012 20.4 2.0 35 31-65 14-48 (70)
96 PF00347 Ribosomal_L6: Ribosom 26.1 1.6E+02 0.0034 17.7 5.0 44 50-125 2-47 (77)
97 KOG3260 Calcyclin-binding prot 26.1 1.4E+02 0.0031 22.3 4.2 40 30-70 77-116 (224)
98 COG0097 RplF Ribosomal protein 25.4 2.8E+02 0.0061 20.5 6.5 22 48-70 10-31 (178)
99 cd01759 PLAT_PL PLAT/LH2 domai 24.2 2.3E+02 0.0051 19.1 8.3 44 94-143 44-88 (113)
100 TIGR03422 mito_frataxin fratax 23.8 60 0.0013 21.4 1.7 16 112-127 30-45 (97)
101 cd02178 GH16_beta_agarase Beta 23.7 2.1E+02 0.0045 21.9 5.0 51 50-105 57-110 (258)
102 cd05726 Ig4_Robo Fhird immunog 23.4 1.9E+02 0.0041 17.7 6.6 65 27-102 15-79 (90)
103 PF13141 DUF3979: Protein of u 23.2 2.3E+02 0.005 18.7 4.5 54 78-140 13-69 (114)
104 PRK11198 LysM domain/BON super 22.7 1.3E+02 0.0029 21.1 3.5 24 46-70 38-61 (147)
105 cd08023 GH16_laminarinase_like 22.1 3.3E+02 0.0072 20.1 6.3 57 45-105 32-91 (235)
106 cd02859 AMPKbeta_GBD_like AMP- 21.8 94 0.002 19.2 2.3 26 22-47 20-45 (79)
107 PF14545 DBB: Dof, BCAP, and B 21.8 2.9E+02 0.0062 19.6 4.9 28 35-62 47-77 (142)
108 PF07873 YabP: YabP family; I 21.5 71 0.0015 19.2 1.6 22 48-70 23-44 (66)
109 PRK14282 chaperone protein Dna 21.5 4.5E+02 0.0097 21.4 7.8 24 104-127 288-312 (369)
110 cd06495 p23_NUDCD3_like p23-li 21.3 2.6E+02 0.0055 18.5 5.7 34 92-125 12-46 (102)
111 TIGR00251 conserved hypothetic 21.0 2.2E+02 0.0047 18.3 3.9 40 32-72 1-42 (87)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=2.9e-27 Score=166.93 Aligned_cols=104 Identities=22% Similarity=0.344 Sum_probs=91.0
Q ss_pred CCceeeEEE-cCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCC
Q 032282 26 STALMDWLE-SPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPE 104 (144)
Q Consensus 26 ~~~~~~i~e-~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~ 104 (144)
..|++||.+ ++++|.|.++|||++++||+|++.+ +.|+|+|++. .+ .+...|+++|+ .+|+|+|+|.||.
T Consensus 33 ~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~--~~---~~~~~~~~~Er---~~g~F~R~~~LP~ 103 (137)
T PRK10743 33 GYPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHA--DE---QKERTYLYQGI---AERNFERKFQLAE 103 (137)
T ss_pred CCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEC--cc---ccCCcEEEEEE---ECCEEEEEEECCC
Confidence 348999995 8999999999999999999999996 6999999987 32 34567999999 9999999999999
Q ss_pred CCCcCCeEEEEeCCEEEEEEecCCCCCCCCcEEEeee
Q 032282 105 NVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINIT 141 (144)
Q Consensus 105 ~vd~~~i~A~~~~GiL~I~~pk~~~~~~~~~~~I~I~ 141 (144)
+|+.+ +|.|+||+|+|++||. ..+....++|+|+
T Consensus 104 ~Vd~~--~A~~~dGVL~I~lPK~-~~~~~~~r~I~I~ 137 (137)
T PRK10743 104 NIHVR--GANLVNGLLYIDLERV-IPEAKKPRRIEIN 137 (137)
T ss_pred CcccC--cCEEeCCEEEEEEeCC-CccccCCeEEeeC
Confidence 99999 5999999999999997 4445567899885
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.6e-27 Score=167.76 Aligned_cols=109 Identities=34% Similarity=0.536 Sum_probs=98.7
Q ss_pred CCCceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCC
Q 032282 25 GSTALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPE 104 (144)
Q Consensus 25 ~~~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~ 104 (144)
.+.|++||+++++.|+|.++|||+++++|+|++++ +.|+|+|++. .+.. .+...+.++|+ .++.|+|+|.||+
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~--~~~~-~~~~~~~~~e~---~~~~f~r~~~Lp~ 110 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGERE--EEEE-EEEEGYLRRER---AYGEFERTFRLPE 110 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEec--cccc-ccCCceEEEEE---EeeeEEEEEECcc
Confidence 47899999999999999999999999999999996 7999999999 5444 67889999999 9999999999999
Q ss_pred CCCcCCeEEEEeCCEEEEEEecCCCCCCCCcEEEeee
Q 032282 105 NVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINIT 141 (144)
Q Consensus 105 ~vd~~~i~A~~~~GiL~I~~pk~~~~~~~~~~~I~I~ 141 (144)
.|+.+.++|.|+||+|+|++||. ..+....++|.|+
T Consensus 111 ~v~~~~~~A~~~nGvL~I~lpk~-~~~~~~~~~i~I~ 146 (146)
T COG0071 111 KVDPEVIKAKYKNGLLTVTLPKA-EPEEKKPKRIEIE 146 (146)
T ss_pred cccccceeeEeeCcEEEEEEecc-ccccccCceeecC
Confidence 99999999999999999999999 6554456788774
No 3
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.95 E-value=6.9e-27 Score=165.67 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=93.2
Q ss_pred CCCCceeeEEE-cCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEEC
Q 032282 24 SGSTALMDWLE-SPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIEL 102 (144)
Q Consensus 24 ~~~~~~~~i~e-~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~l 102 (144)
....|++||.+ ++++|+|.++|||++++||+|++++ +.|+|+|++. .+ .++..|+++|+ .+|+|+|+|.|
T Consensus 29 ~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~--~~---~~~~~~~~~Er---~~g~F~R~f~L 99 (142)
T PRK11597 29 SQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPE--QP---EKEVKWLHQGL---VNQPFSLSFTL 99 (142)
T ss_pred cCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEc--cc---cCCCcEEEEEE---eCcEEEEEEEC
Confidence 34679999998 4779999999999999999999995 7999999976 32 34678999999 99999999999
Q ss_pred CCCCCcCCeEEEEeCCEEEEEEecCCCCCCCCcEEEeeee
Q 032282 103 PENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINITS 142 (144)
Q Consensus 103 P~~vd~~~i~A~~~~GiL~I~~pk~~~~~~~~~~~I~I~~ 142 (144)
|.+||.+ +|.|+||+|+|++||. ..+....++|+|+.
T Consensus 100 P~~vd~~--~A~~~nGVL~I~lPK~-~~~~~~~rkI~I~~ 136 (142)
T PRK11597 100 AENMEVS--GATFVNGLLHIDLIRN-EPEAIAPQRIAISE 136 (142)
T ss_pred CCCcccC--cCEEcCCEEEEEEecc-CccccCCcEEEECC
Confidence 9999998 7999999999999997 44445668999975
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.94 E-value=1.8e-26 Score=152.79 Aligned_cols=92 Identities=54% Similarity=0.953 Sum_probs=84.7
Q ss_pred eeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCc
Q 032282 29 LMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKL 108 (144)
Q Consensus 29 ~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~ 108 (144)
++||+|++++|+|.++|||+++++|+|++.+++.|+|+|++. .+.. .....++++|+ .++.|+|+|.||.+++.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~--~~~~-~~~~~~~~~e~---~~g~f~r~i~LP~~v~~ 74 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERK--KEEE-KKGDDWHRVER---SSGRFVRRFRLPENADA 74 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEec--cccc-ccCCCEEEEEE---eccEEEEEEECCCCCCH
Confidence 479999999999999999999999999998646899999987 4444 55778999999 99999999999999999
Q ss_pred CCeEEEEeCCEEEEEEec
Q 032282 109 DQIKAHVDNGVLTVIVPK 126 (144)
Q Consensus 109 ~~i~A~~~~GiL~I~~pk 126 (144)
+.|+|.|+||+|+|++||
T Consensus 75 ~~i~A~~~nGvL~I~lPK 92 (92)
T cd06472 75 DEVKAFLENGVLTVTVPK 92 (92)
T ss_pred HHCEEEEECCEEEEEecC
Confidence 999999999999999997
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=6.9e-25 Score=145.27 Aligned_cols=93 Identities=37% Similarity=0.571 Sum_probs=82.7
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCC
Q 032282 28 ALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVK 107 (144)
Q Consensus 28 ~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd 107 (144)
+++||++++++|+|.++|||+++++|+|++.+ +.|+|+|++....+.. .....|+++|+ .+|+|.|+|.|| +++
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~-~~~~~~~~~e~---~~g~f~r~~~lp-~v~ 74 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEK-DKKGNYIRRER---YYGSFSRSFYLP-NVD 74 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccc-cccCCEEEEee---eccEEEEEEECC-CCC
Confidence 47999999999999999999999999999995 7999999998322222 33457999999 999999999999 799
Q ss_pred cCCeEEEEeCCEEEEEEec
Q 032282 108 LDQIKAHVDNGVLTVIVPK 126 (144)
Q Consensus 108 ~~~i~A~~~~GiL~I~~pk 126 (144)
.+.|+|.|+||+|+|++||
T Consensus 75 ~~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 75 EEEIKAKYENGVLKITLPK 93 (93)
T ss_pred HHHCEEEEECCEEEEEEcC
Confidence 9999999999999999997
No 6
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.92 E-value=3.6e-24 Score=143.70 Aligned_cols=102 Identities=39% Similarity=0.678 Sum_probs=82.7
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCC
Q 032282 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQ 110 (144)
Q Consensus 31 ~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~ 110 (144)
||.+++++|.|.++|||+++++|+|++.+ +.|+|+|.+. .. ..+..++..|+ .+++|.|+|.||+++|.++
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~--~~---~~~~~~~~~~~---~~~~f~r~~~lP~~vd~~~ 71 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRK--EE---EEDDRYYRSER---RYGSFERSIRLPEDVDPDK 71 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEE--GE---ECTTCEEEE-S----SEEEEEEEE-STTB-GGG
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceee--ee---eeeeeeeeccc---ccceEEEEEcCCCcCCcce
Confidence 68999999999999999999999999996 6899999988 22 44567777888 9999999999999999999
Q ss_pred eEEEEeCCEEEEEEecCCCCCCCCcEEEeee
Q 032282 111 IKAHVDNGVLTVIVPKDANHKKSSVRNINIT 141 (144)
Q Consensus 111 i~A~~~~GiL~I~~pk~~~~~~~~~~~I~I~ 141 (144)
|+|.|+||+|+|++||......+..++|+|+
T Consensus 72 i~a~~~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 72 IKASYENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp -EEEETTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEecCCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999999999933434478999985
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.91 E-value=3.1e-23 Score=136.78 Aligned_cols=89 Identities=24% Similarity=0.460 Sum_probs=80.3
Q ss_pred ceeeEEEcC-CeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCC
Q 032282 28 ALMDWLESP-SAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENV 106 (144)
Q Consensus 28 ~~~~i~e~~-~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~v 106 (144)
|+++|.+++ ++|+|.++|||+++++|+|++.+ +.|+|+|++. ... ..+..|+++|+ .+++|.|+|.||.++
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~--~~~--~~~~~~~~~e~---~~g~f~R~~~LP~~v 72 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKA--DEE--NEEREYLHRGI---AKRAFERSFNLADHV 72 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEc--ccc--cCCCcEEEEEE---eceEEEEEEECCCCc
Confidence 689999975 89999999999999999999995 7999999998 433 35678999999 999999999999999
Q ss_pred CcCCeEEEEeCCEEEEEEec
Q 032282 107 KLDQIKAHVDNGVLTVIVPK 126 (144)
Q Consensus 107 d~~~i~A~~~~GiL~I~~pk 126 (144)
+.. +|.|+||+|+|+||+
T Consensus 73 d~~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 73 KVK--GAELENGLLTIDLER 90 (90)
T ss_pred eEC--eeEEeCCEEEEEEEC
Confidence 875 999999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.89 E-value=2.5e-22 Score=131.48 Aligned_cols=82 Identities=24% Similarity=0.430 Sum_probs=71.6
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCC
Q 032282 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQ 110 (144)
Q Consensus 31 ~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~ 110 (144)
+|.+++++|.|.++||||++++|+|++.+ +.|+|+|++. .. ..+..|+++ .|+|+|.||.+||.++
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~--~~---~~~~~~~~~--------ef~R~~~LP~~Vd~~~ 69 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHS--ER---QDDHGYISR--------EFHRRYRLPSNVDQSA 69 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEc--ce---eCCCCEEEE--------EEEEEEECCCCCChHH
Confidence 68999999999999999999999999996 6999999876 22 223345433 4999999999999999
Q ss_pred eEEEE-eCCEEEEEEec
Q 032282 111 IKAHV-DNGVLTVIVPK 126 (144)
Q Consensus 111 i~A~~-~~GiL~I~~pk 126 (144)
|+|.| +||+|+|++||
T Consensus 70 i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 70 ITCSLSADGMLTFSGPK 86 (86)
T ss_pred eEEEeCCCCEEEEEecC
Confidence 99999 89999999997
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.88 E-value=8e-22 Score=128.27 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=70.6
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCC
Q 032282 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQ 110 (144)
Q Consensus 31 ~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~ 110 (144)
+|.+++++|.|.++||||++++|+|++.+ +.|+|+|++. ... ....|+++ .|+|+|.||.+||.+.
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~--~~~---~~~~~~~~--------ef~R~~~LP~~vd~~~ 66 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHE--ERQ---DEHGFISR--------EFHRRYRLPPGVDPAA 66 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEc--eEc---CCCCEEEE--------EEEEEEECCCCcChHH
Confidence 47889999999999999999999999996 7999999876 222 23345433 5999999999999999
Q ss_pred eEEEE-eCCEEEEEEec
Q 032282 111 IKAHV-DNGVLTVIVPK 126 (144)
Q Consensus 111 i~A~~-~~GiL~I~~pk 126 (144)
|+|.| +||+|+|++||
T Consensus 67 i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 67 ITSSLSADGVLTISGPR 83 (83)
T ss_pred eEEEECCCCEEEEEecC
Confidence 99999 79999999997
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.87 E-value=7.7e-22 Score=128.60 Aligned_cols=82 Identities=24% Similarity=0.420 Sum_probs=70.5
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCe
Q 032282 32 WLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQI 111 (144)
Q Consensus 32 i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i 111 (144)
+.+++++|.|.++||||++++|+|++.+ +.|+|+|++. .+. .+..|++ +.|+|+|.||.+||.++|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~--~~~---~~~~~~~--------~eF~R~~~LP~~vd~~~i 67 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHE--ERQ---DEHGFIS--------REFQRKYRIPADVDPLTI 67 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEc--cee---CCCCEEE--------EEEEEEEECCCCCChHHc
Confidence 6778999999999999999999999995 7999999876 322 2334542 359999999999999999
Q ss_pred EEEEe-CCEEEEEEecC
Q 032282 112 KAHVD-NGVLTVIVPKD 127 (144)
Q Consensus 112 ~A~~~-~GiL~I~~pk~ 127 (144)
+|.|+ ||+|+|++||+
T Consensus 68 ~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 68 TSSLSPDGVLTVCGPRK 84 (84)
T ss_pred EEEeCCCCEEEEEEeCC
Confidence 99995 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.87 E-value=5.2e-22 Score=128.45 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=70.8
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCC
Q 032282 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQ 110 (144)
Q Consensus 31 ~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~ 110 (144)
+|.+++++|.|.++||||++++|+|++.+ +.|+|+|+++ . ..+ . .+++|+|+|.||.+||++.
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~--~-----~~~------~---~~g~F~R~~~LP~~vd~e~ 64 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKL--A-----SDG------T---VMNTFTHKCQLPEDVDPTS 64 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEe--c-----cCC------C---EEEEEEEEEECCCCcCHHH
Confidence 68899999999999999999999999996 7999999987 2 111 1 5679999999999999999
Q ss_pred eEEEE-eCCEEEEEEec
Q 032282 111 IKAHV-DNGVLTVIVPK 126 (144)
Q Consensus 111 i~A~~-~~GiL~I~~pk 126 (144)
|+|.| +||+|+|+++|
T Consensus 65 v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 65 VSSSLGEDGTLTIKARR 81 (81)
T ss_pred eEEEecCCCEEEEEecC
Confidence 99998 99999999986
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.86 E-value=3.1e-21 Score=126.28 Aligned_cols=82 Identities=22% Similarity=0.418 Sum_probs=71.2
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcC
Q 032282 30 MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLD 109 (144)
Q Consensus 30 ~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~ 109 (144)
.+|+|++++|.|.++|||+++++|+|++.+ +.|+|+|++. .... ...+ ..++|+|+|.||.+||.+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~--~~~~---~~~~--------~~~~f~R~f~LP~~vd~~ 68 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHE--EKQD---EHGF--------VSRCFTRKYTLPPGVDPT 68 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEEC--cCcC---CCCE--------EEEEEEEEEECCCCCCHH
Confidence 589999999999999999999999999996 6999999987 3222 2223 234799999999999999
Q ss_pred CeEEEEe-CCEEEEEEe
Q 032282 110 QIKAHVD-NGVLTVIVP 125 (144)
Q Consensus 110 ~i~A~~~-~GiL~I~~p 125 (144)
+|+|.|+ ||+|+|++|
T Consensus 69 ~v~A~~~~dGvL~I~lP 85 (86)
T cd06475 69 AVTSSLSPDGILTVEAP 85 (86)
T ss_pred HcEEEECCCCeEEEEec
Confidence 9999996 999999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.86 E-value=3.4e-21 Score=125.25 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=69.0
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCe
Q 032282 32 WLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQI 111 (144)
Q Consensus 32 i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i 111 (144)
+..++++|.|.++||||++++|+|++.+ +.|+|+|++. ... ....+ ..+.|+|+|.||.+||.+.|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~--~~~---~~~~~--------~~~eF~R~~~LP~~vd~~~v 67 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHP--QRM---DRHGF--------VSREFTRTYILPMDVDPLLV 67 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEc--cee---cCCCE--------EEEEEEEEEECCCCCChhhE
Confidence 4567889999999999999999999996 6999999986 322 22234 34469999999999999999
Q ss_pred EEEEe-CCEEEEEEec
Q 032282 112 KAHVD-NGVLTVIVPK 126 (144)
Q Consensus 112 ~A~~~-~GiL~I~~pk 126 (144)
+|.|. ||+|+|++||
T Consensus 68 ~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 68 RASLSHDGILCIQAPR 83 (83)
T ss_pred EEEecCCCEEEEEecC
Confidence 99995 9999999997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.85 E-value=6.8e-21 Score=124.89 Aligned_cols=83 Identities=24% Similarity=0.504 Sum_probs=70.7
Q ss_pred EcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEE
Q 032282 34 ESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKA 113 (144)
Q Consensus 34 e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A 113 (144)
+..+.|.|.++||||++++|+|++.+ +.|+|+|++. .... .....|. + .+++|+|+|.||.+||.+.|+|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~--~~~~-~~~~~~~---~---~~~~F~R~~~LP~~Vd~~~i~A 73 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKRE--KKNE-DEKGSFS---Y---EYQEFVREAQLPEHVDPEAVTC 73 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEe--eecc-cCCCcEE---E---EeeEEEEEEECCCCcChHHeEE
Confidence 34679999999999999999999995 7999999987 3333 3334443 3 4679999999999999999999
Q ss_pred EE-eCCEEEEEEec
Q 032282 114 HV-DNGVLTVIVPK 126 (144)
Q Consensus 114 ~~-~~GiL~I~~pk 126 (144)
.| +||+|+|++|+
T Consensus 74 ~~~~dGvL~I~~P~ 87 (87)
T cd06481 74 SLSPSGHLHIRAPR 87 (87)
T ss_pred EeCCCceEEEEcCC
Confidence 99 99999999996
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.85 E-value=1.6e-20 Score=121.95 Aligned_cols=88 Identities=44% Similarity=0.752 Sum_probs=78.8
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCC
Q 032282 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQ 110 (144)
Q Consensus 31 ~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~ 110 (144)
++.+++++|+|.++|||+++++|+|++.+ +.|.|+|++. .... .. ..+...++ .++.|.|+|.||..++.+.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~--~~~~-~~-~~~~~~~~---~~~~f~r~~~LP~~vd~~~ 72 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGERE--EEEE-EE-ENYLRRER---SYGSFSRSFRLPEDVDPDK 72 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEe--cccc-cC-CcEEEEEE---eCcEEEEEEECCCCcCHHH
Confidence 47889999999999999999999999996 7999999999 4333 22 26777888 9999999999999999999
Q ss_pred eEEEEeCCEEEEEEec
Q 032282 111 IKAHVDNGVLTVIVPK 126 (144)
Q Consensus 111 i~A~~~~GiL~I~~pk 126 (144)
++|.|+||+|+|++||
T Consensus 73 i~a~~~~G~L~I~~pk 88 (88)
T cd06464 73 IKASLENGVLTITLPK 88 (88)
T ss_pred cEEEEeCCEEEEEEcC
Confidence 9999999999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.83 E-value=2.2e-20 Score=122.30 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=68.7
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEE
Q 032282 35 SPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAH 114 (144)
Q Consensus 35 ~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~ 114 (144)
+++.|+|.++|||+++++|+|++.+ +.|+|+|+++ ...+ ... ..|+ .+|+|.|+|.||.+||.++|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~--~~~e-~~~----~~er---~~g~F~R~f~LP~~Vd~d~i~A~ 74 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERE--NRYD-CLG----SKKY---SYMNICKEFSLPPGVDEKDVTYS 74 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEe--cccc-cCC----ccEE---EEEEEEEEEECCCCcChHHcEEE
Confidence 5679999999999999999999996 6999999998 3322 111 2367 89999999999999999999999
Q ss_pred EeCC-EEEEEEe
Q 032282 115 VDNG-VLTVIVP 125 (144)
Q Consensus 115 ~~~G-iL~I~~p 125 (144)
|+|| +|+|..|
T Consensus 75 ~~~~~~l~i~~~ 86 (87)
T cd06482 75 YGLGSVVKIETP 86 (87)
T ss_pred EcCCCEEEEeeC
Confidence 9666 9999987
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.83 E-value=8e-20 Score=118.70 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=67.4
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeE
Q 032282 33 LESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIK 112 (144)
Q Consensus 33 ~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~ 112 (144)
.+++++|.|.++|||+++++|+|++.+ +.|+|+|++. .+.. ...+ ..++|+|+|.||.+|+.+.|+
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~--~~~~---~~~~--------~~r~F~R~~~LP~~Vd~~~v~ 68 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHG--VRMD---EHGF--------ISRSFTRQYQLPDGVEHKDLS 68 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEc--cccC---CCCE--------EEEEEEEEEECCCCcchheEE
Confidence 467889999999999999999999996 7999999987 3221 2333 233899999999999999999
Q ss_pred EEE-eCCEEEEEEe
Q 032282 113 AHV-DNGVLTVIVP 125 (144)
Q Consensus 113 A~~-~~GiL~I~~p 125 (144)
|.| +||+|+|+++
T Consensus 69 A~~~~dGvL~I~~~ 82 (83)
T cd06477 69 AMLCHDGILVVETK 82 (83)
T ss_pred EEEcCCCEEEEEec
Confidence 998 8999999986
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.82 E-value=4.1e-20 Score=120.06 Aligned_cols=77 Identities=32% Similarity=0.547 Sum_probs=66.3
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEEE
Q 032282 36 PSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHV 115 (144)
Q Consensus 36 ~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~~ 115 (144)
+++|.|.++||||++++|+|++.+ +.|+|+|++. ... .... + .+++|.|+|.||.+||.+.++|.|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~--~~~---~~~~-----~---~~~~f~r~~~LP~~vd~~~i~A~~ 71 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHE--ERE---DEHG-----Y---VSREFTRRYQLPEGVDPDSVTSSL 71 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEe--eec---cCCC-----E---EEEEEEEEEECCCCCChHHeEEEe
Confidence 359999999999999999999996 7999999988 221 1122 2 456899999999999999999999
Q ss_pred eC-CEEEEEEec
Q 032282 116 DN-GVLTVIVPK 126 (144)
Q Consensus 116 ~~-GiL~I~~pk 126 (144)
.| |+|+|++||
T Consensus 72 ~~~GvL~I~~Pk 83 (83)
T cd06526 72 SSDGVLTIEAPK 83 (83)
T ss_pred CCCcEEEEEecC
Confidence 88 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.1e-18 Score=127.64 Aligned_cols=114 Identities=49% Similarity=0.772 Sum_probs=98.1
Q ss_pred CCCCceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECC
Q 032282 24 SGSTALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELP 103 (144)
Q Consensus 24 ~~~~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP 103 (144)
..+.++.+|.++.++|.+.++|||+++++++|.+++++.|+|+|++....++. .....++..|+ ..+.|.|.+.||
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~-~~~~~~~~~E~---~~g~F~r~~~lP 156 (196)
T KOG0710|consen 81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEES-GSGKKWKRVER---KLGKFKRRFELP 156 (196)
T ss_pred ccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccc-cCCccceeehh---cccceEeeecCC
Confidence 44777888999999999999999999999999999866899999999332222 35667888999 999999999999
Q ss_pred CCCCcCCeEEEEeCCEEEEEEecCCCC--CCCCcEEEeeee
Q 032282 104 ENVKLDQIKAHVDNGVLTVIVPKDANH--KKSSVRNINITS 142 (144)
Q Consensus 104 ~~vd~~~i~A~~~~GiL~I~~pk~~~~--~~~~~~~I~I~~ 142 (144)
+.++.+.|+|.|+||+|+|++||. .. ..+..+.|.|.+
T Consensus 157 env~~d~ikA~~~nGVL~VvvpK~-~~~~~~~~v~~i~i~~ 196 (196)
T KOG0710|consen 157 ENVDVDEIKAEMENGVLTVVVPKL-EPLLKKPKVRQIAISG 196 (196)
T ss_pred ccccHHHHHHHhhCCeEEEEEecc-cccccCCccceeeccC
Confidence 999999999999999999999998 54 467777887753
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.74 E-value=1.9e-17 Score=109.10 Aligned_cols=81 Identities=19% Similarity=0.335 Sum_probs=69.2
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCC
Q 032282 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQ 110 (144)
Q Consensus 31 ~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~ 110 (144)
-+..+++.|.|.+++.||+++||+|++.+ +.|+|+|++. .... + ..+ ..++|+|+|.||++||.+.
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~--~~~~-e--~g~--------~~r~F~R~~~LP~~Vd~~~ 74 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHE--EQQK-E--GGI--------VSKNFTKKIQLPPEVDPVT 74 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEEC--cccC-C--CCE--------EEEEEEEEEECCCCCCchh
Confidence 34567789999999999999999999996 7999999988 3322 2 233 3458999999999999999
Q ss_pred eEEEEe-CCEEEEEEe
Q 032282 111 IKAHVD-NGVLTVIVP 125 (144)
Q Consensus 111 i~A~~~-~GiL~I~~p 125 (144)
|+|.+. ||+|+|.+|
T Consensus 75 v~s~l~~dGvL~IeaP 90 (91)
T cd06480 75 VFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEeCCCCeEEEEcC
Confidence 999995 999999998
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.8e-16 Score=115.81 Aligned_cols=101 Identities=26% Similarity=0.426 Sum_probs=85.0
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCC
Q 032282 28 ALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVK 107 (144)
Q Consensus 28 ~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd 107 (144)
...++..+++.|.|.+|+..|++++|+|++.+ +.|.|.|++. .. .++..| ..+.|.|+|.||++||
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHe--er---~d~~G~--------v~R~F~R~y~LP~~vd 128 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHE--EK---EDEHGY--------VSRSFVRKYLLPEDVD 128 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeec--cc---cCCCCe--------EEEEEEEEecCCCCCC
Confidence 46788899999999999999999999999995 7999999998 21 223333 3448999999999999
Q ss_pred cCCeEEEE-eCCEEEEEEecCCCCCCCCcEEEeeeec
Q 032282 108 LDQIKAHV-DNGVLTVIVPKDANHKKSSVRNINITSK 143 (144)
Q Consensus 108 ~~~i~A~~-~~GiL~I~~pk~~~~~~~~~~~I~I~~~ 143 (144)
++.|++.+ .||+|+|.+||. +......|.|+|+..
T Consensus 129 p~~V~S~LS~dGvLtI~ap~~-~~~~~~er~ipI~~~ 164 (173)
T KOG3591|consen 129 PTSVTSTLSSDGVLTIEAPKP-PPKQDNERSIPIEQV 164 (173)
T ss_pred hhheEEeeCCCceEEEEccCC-CCcCccceEEeEeec
Confidence 99999999 999999999999 544446788988753
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.57 E-value=3.8e-14 Score=88.86 Aligned_cols=80 Identities=41% Similarity=0.809 Sum_probs=69.7
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCe
Q 032282 32 WLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQI 111 (144)
Q Consensus 32 i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i 111 (144)
+.++++.|.|.++|||+.++++.|.+.+ +.|.|+|... .... .+. ..+.|.+.+.||..++++.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~-------~~~~----~~~---~~~~~~~~~~L~~~i~~~~~ 65 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKRE-------EEEE----RER---SYGEFERSFELPEDVDPEKS 65 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEc-------CCCc----ceE---eeeeEEEEEECCCCcCHHHC
Confidence 4678899999999999999999999996 7999999987 1111 222 56789999999999999999
Q ss_pred EEEEeCCEEEEEEec
Q 032282 112 KAHVDNGVLTVIVPK 126 (144)
Q Consensus 112 ~A~~~~GiL~I~~pk 126 (144)
+|.+.+|+|+|.+||
T Consensus 66 ~~~~~~~~l~i~l~K 80 (80)
T cd00298 66 KASLENGVLEITLPK 80 (80)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.27 E-value=5.1e-11 Score=75.85 Aligned_cols=69 Identities=17% Similarity=0.333 Sum_probs=62.4
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCe
Q 032282 32 WLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQI 111 (144)
Q Consensus 32 i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i 111 (144)
+.++++.+.|.+.+||+++++++|++++ +.|.|++ . .|.+.+.||..|+++..
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~--~------------------------~~~~~~~l~~~I~~e~~ 53 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF--P------------------------PYLFELDLAAPIDDEKS 53 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC--C------------------------CEEEEEeCccccccccc
Confidence 3578899999999999999999999996 6888854 1 37889999999999999
Q ss_pred EEEEeCCEEEEEEecC
Q 032282 112 KAHVDNGVLTVIVPKD 127 (144)
Q Consensus 112 ~A~~~~GiL~I~~pk~ 127 (144)
+|.+.+|.|.|+|+|.
T Consensus 54 ~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 54 SAKIGNGVLVFTLVKK 69 (78)
T ss_pred EEEEeCCEEEEEEEeC
Confidence 9999999999999998
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.09 E-value=1.6e-09 Score=78.96 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=62.2
Q ss_pred CCCceeeEEEcCC-eEEEEEEcCCCCCCC-eEEEEec-CCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEE
Q 032282 25 GSTALMDWLESPS-AHIFKIDVPGYSREN-IKVQIED-GNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIE 101 (144)
Q Consensus 25 ~~~~~~~i~e~~~-~~~i~~~LpG~~~e~-i~v~i~~-g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~ 101 (144)
...+.+++.+.++ .++|.++|||+++++ |+|.+.. ...|+|. .. +.+.+++.
T Consensus 89 ~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~--~~-----------------------~~~~krv~ 143 (177)
T PF05455_consen 89 EESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIR--VG-----------------------EKYLKRVA 143 (177)
T ss_pred cceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEe--cC-----------------------CceEeeEe
Confidence 3578889998887 699999999999888 9999993 2455552 22 23668999
Q ss_pred CCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 102 LPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 102 lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
||.. +++.++|.|.||||+|++-+.
T Consensus 144 L~~~-~~e~~~~t~nNgILEIri~~~ 168 (177)
T PF05455_consen 144 LPWP-DPEITSATFNNGILEIRIRRT 168 (177)
T ss_pred cCCC-ccceeeEEEeCceEEEEEeec
Confidence 9966 688899999999999999877
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.07 E-value=2.3e-09 Score=68.15 Aligned_cols=74 Identities=18% Similarity=0.335 Sum_probs=65.2
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCe
Q 032282 32 WLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQI 111 (144)
Q Consensus 32 i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i 111 (144)
+.++++.+.|.+.+||..++++.|.+.+ +.|.|++... ..+.|...+.|+..|+++..
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~---------------------~~~~~~~~~~L~~~I~~~~s 58 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGG---------------------GGKEYLLEGELFGPIDPEES 58 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCC---------------------CCCceEEeeEccCccchhhc
Confidence 3577899999999999999999999996 7899987654 22357788999999999999
Q ss_pred EEEEeCCEEEEEEecC
Q 032282 112 KAHVDNGVLTVIVPKD 127 (144)
Q Consensus 112 ~A~~~~GiL~I~~pk~ 127 (144)
.+.+.+|.|.|+|+|.
T Consensus 59 ~~~~~~~~l~i~L~K~ 74 (84)
T cd06463 59 KWTVEDRKIEITLKKK 74 (84)
T ss_pred EEEEeCCEEEEEEEEC
Confidence 9999999999999998
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.85 E-value=2.6e-08 Score=63.93 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=65.8
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCC
Q 032282 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQ 110 (144)
Q Consensus 31 ~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~ 110 (144)
|++++++.+.|.+.+||+.++++.|.+.+ +.|.|++... ....|...+.|+..|+++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~---------------------~~~~~~~~~~L~~~I~~~~ 58 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP---------------------GGSEYQLELDLFGPIDPEQ 58 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC---------------------CCCeEEEecccccccCchh
Confidence 57889999999999999999999999996 7899976533 1235778889999999999
Q ss_pred eEEEEeCCEEEEEEecC
Q 032282 111 IKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 111 i~A~~~~GiL~I~~pk~ 127 (144)
.++.+.+|.|.|+|.|.
T Consensus 59 s~~~~~~~~vei~L~K~ 75 (84)
T cd06466 59 SKVSVLPTKVEITLKKA 75 (84)
T ss_pred cEEEEeCeEEEEEEEcC
Confidence 99999999999999998
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.65 E-value=1.5e-06 Score=54.53 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=64.6
Q ss_pred ceeeEEEcCCeEEEEEEcCCC--CCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCC
Q 032282 28 ALMDWLESPSAHIFKIDVPGY--SRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPEN 105 (144)
Q Consensus 28 ~~~~i~e~~~~~~i~~~LpG~--~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~ 105 (144)
|++++.++++...|.+.+++. +++++.|.+.+ +.|.|+.... ....|...+.|...
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~---------------------~~~~~~~~~~L~~~ 58 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSG---------------------DGKEYLLEGELFGE 58 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEET---------------------TSCEEEEEEEBSS-
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEcc---------------------CCceEEEEEEEeee
Confidence 578999999999999999665 59999999997 7999986655 11357788889999
Q ss_pred CCcCCeEEEEeCCEEEEEEec
Q 032282 106 VKLDQIKAHVDNGVLTVIVPK 126 (144)
Q Consensus 106 vd~~~i~A~~~~GiL~I~~pk 126 (144)
|+++..++.+.++.|.|+|.|
T Consensus 59 I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 59 IDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp BECCCEEEEEETTEEEEEEEB
T ss_pred EcchhcEEEEECCEEEEEEEC
Confidence 999999999999999999987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.25 E-value=7.4e-06 Score=65.00 Aligned_cols=65 Identities=26% Similarity=0.493 Sum_probs=56.2
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEE
Q 032282 36 PSAHIFKIDVPGY-SRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAH 114 (144)
Q Consensus 36 ~~~~~i~~~LpG~-~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~ 114 (144)
.+.++|++.|||+ +..+|.|.|.+ +.|.|..... .|.-.+.||..|+.+..+|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~------------------------~y~L~l~LP~~V~~~~~~Ak 314 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP------------------------KYRLDLPLPYPVDEDNGKAK 314 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC------------------------ceEEEccCCCcccCCCceEE
Confidence 4689999999999 88999999996 6899954331 36678999999999999999
Q ss_pred E--eCCEEEEEEe
Q 032282 115 V--DNGVLTVIVP 125 (144)
Q Consensus 115 ~--~~GiL~I~~p 125 (144)
| +.+.|+|+||
T Consensus 315 f~~~~~~L~vtlp 327 (328)
T PF08190_consen 315 FDKKTKTLTVTLP 327 (328)
T ss_pred EccCCCEEEEEEE
Confidence 9 5599999998
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.23 E-value=2.9e-05 Score=52.42 Aligned_cols=77 Identities=16% Similarity=0.358 Sum_probs=65.5
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCC
Q 032282 28 ALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVK 107 (144)
Q Consensus 28 ~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd 107 (144)
|+++++++.+...|.+.+||+ +++.|.+.+ +.|.|++... . ....|.-.+.|...|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~-------~-------------~~~~y~~~~~L~~~I~ 57 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGG-------G-------------GGKKYEFDLEFYKEID 57 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcC-------C-------------CCeeEEEEeEhhhhcc
Confidence 578999999999999999998 889999996 7899987543 1 1123667779999999
Q ss_pred cCCeEEEEeCCEEEEEEecC
Q 032282 108 LDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 108 ~~~i~A~~~~GiL~I~~pk~ 127 (144)
++..+..+.++.|.|+|.|.
T Consensus 58 pe~s~~~v~~~kveI~L~K~ 77 (108)
T cd06465 58 PEESKYKVTGRQIEFVLRKK 77 (108)
T ss_pred ccccEEEecCCeEEEEEEEC
Confidence 99999999999999999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.12 E-value=3.7e-05 Score=49.48 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=63.4
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCC
Q 032282 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQ 110 (144)
Q Consensus 31 ~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~ 110 (144)
|++++++...|.+.++|+.++++.|++.+ +.|.+++... ....|.-.+.|...|+++.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~---------------------~~~~y~~~~~L~~~I~p~~ 58 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLP---------------------SGNDYSLKLHLLHPIVPEQ 58 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECC---------------------CCCcEEEeeecCceecchh
Confidence 57888999999999999999999999997 6899987654 1113566778999999998
Q ss_pred eEEEEeCCEEEEEEecC
Q 032282 111 IKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 111 i~A~~~~GiL~I~~pk~ 127 (144)
-+.....+-+.|.|.|.
T Consensus 59 s~~~v~~~kiei~L~K~ 75 (84)
T cd06489 59 SSYKILSTKIEIKLKKT 75 (84)
T ss_pred cEEEEeCcEEEEEEEcC
Confidence 88888888999999998
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.93 E-value=0.00024 Score=46.10 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=65.7
Q ss_pred eeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCc
Q 032282 29 LMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKL 108 (144)
Q Consensus 29 ~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~ 108 (144)
+.|++++++...|.+.+.|+.++++.+.+++ +.|.|..... ....|.-.+.|-..|++
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~---------------------~~~~y~~~l~L~~~I~~ 59 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFE---------------------GNKEFQLDIELWGVIDV 59 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECC---------------------CCceEEEEeeccceECh
Confidence 5789999999999999999999999999996 6888876544 11136778899999999
Q ss_pred CCeEEEEeCCEEEEEEecC
Q 032282 109 DQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 109 ~~i~A~~~~GiL~I~~pk~ 127 (144)
+..+......-+.|.|.|.
T Consensus 60 ~~s~~~v~~~kvei~L~K~ 78 (87)
T cd06488 60 EKSSVNMLPTKVEIKLRKA 78 (87)
T ss_pred hHcEEEecCcEEEEEEEeC
Confidence 9988888999999999998
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.88 E-value=0.00042 Score=45.13 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=63.2
Q ss_pred eeeEEEcCCeEEEEEEcCCCCC---CCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEE-CCC
Q 032282 29 LMDWLESPSAHIFKIDVPGYSR---ENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIE-LPE 104 (144)
Q Consensus 29 ~~~i~e~~~~~~i~~~LpG~~~---e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~-lP~ 104 (144)
.++++++++...|.+.+|+... +++.|.+.+ +.|.|.+... .-.+|.-.+. |-.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~---------------------~~~~~~~~~~~L~~ 60 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL---------------------NGKNYRFTINRLLK 60 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC---------------------CCcEEEEEehHhhC
Confidence 5788999999999999999976 999999996 6899987432 0112444554 888
Q ss_pred CCCcCCeEEEEeCCEEEEEEecC
Q 032282 105 NVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 105 ~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
.|+++..+..+..+-+.|+|.|.
T Consensus 61 ~I~~e~s~~~~~~~ki~i~L~K~ 83 (92)
T cd06468 61 KIDPEKSSFKVKTDRIVITLAKK 83 (92)
T ss_pred ccCccccEEEEeCCEEEEEEEeC
Confidence 99999999999999999999998
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.82 E-value=0.00032 Score=44.88 Aligned_cols=72 Identities=22% Similarity=0.380 Sum_probs=58.8
Q ss_pred eEEEcCCeEEEEEEcC-CCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcC
Q 032282 31 DWLESPSAHIFKIDVP-GYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLD 109 (144)
Q Consensus 31 ~i~e~~~~~~i~~~Lp-G~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~ 109 (144)
.+.++++...|.+.+| ++++++++|.+.+ +.|.|+.... ...-.-.|...|+++
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~~------------------------~~~l~~~L~~~I~~~ 56 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKGG------------------------EPLLDGELYAKVKVD 56 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECCC------------------------CceEcCcccCceeEc
Confidence 5788999999999997 7899999999997 6899965311 011233588899999
Q ss_pred CeEEEEeC-CEEEEEEecC
Q 032282 110 QIKAHVDN-GVLTVIVPKD 127 (144)
Q Consensus 110 ~i~A~~~~-GiL~I~~pk~ 127 (144)
.....+.+ ..|.|+++|.
T Consensus 57 ~s~w~~~~~~~v~i~L~K~ 75 (85)
T cd06467 57 ESTWTLEDGKLLEITLEKR 75 (85)
T ss_pred CCEEEEeCCCEEEEEEEEC
Confidence 98889988 9999999998
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.77 E-value=0.00065 Score=43.83 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=58.1
Q ss_pred eeEEEcCCeEEEEEEcC-CCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCc
Q 032282 30 MDWLESPSAHIFKIDVP-GYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKL 108 (144)
Q Consensus 30 ~~i~e~~~~~~i~~~Lp-G~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~ 108 (144)
+++.++.+...|.+.+| |+.+++++|++.. +.|.|..... . .+ -.-.|...|++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~~-----~------------------~~-~~g~L~~~I~~ 55 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKDQ-----A------------------PL-LEGKLYSSIDH 55 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCCC-----C------------------eE-EeCcccCcccc
Confidence 35788999999999996 9999999999997 6899864211 0 11 23378889999
Q ss_pred CCeEEEEeCC-EEEEEEecC
Q 032282 109 DQIKAHVDNG-VLTVIVPKD 127 (144)
Q Consensus 109 ~~i~A~~~~G-iL~I~~pk~ 127 (144)
+.-.-.+++| .|.|+|.|.
T Consensus 56 d~Stw~i~~~~~l~i~L~K~ 75 (85)
T cd06493 56 ESSTWIIKENKSLEVSLIKK 75 (85)
T ss_pred cCcEEEEeCCCEEEEEEEEC
Confidence 9888888777 799999998
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.51 E-value=0.0022 Score=42.32 Aligned_cols=76 Identities=16% Similarity=0.340 Sum_probs=61.2
Q ss_pred CCceeeEEEcCCeEEEEEEcC-CCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCC
Q 032282 26 STALMDWLESPSAHIFKIDVP-GYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPE 104 (144)
Q Consensus 26 ~~~~~~i~e~~~~~~i~~~Lp-G~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~ 104 (144)
..+.+.+.++.+...|.+.|| |.+..++.|.+.. +.|.|..+.. .+ -.| .|+.
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g~-----------~~--------l~G------~L~~ 57 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKGQ-----------EV--------LKG------KLFD 57 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECCE-----------EE--------EcC------cccC
Confidence 456789999999999999998 8999999999997 6899963211 00 111 5788
Q ss_pred CCCcCCeEEEEeCCE-EEEEEecC
Q 032282 105 NVKLDQIKAHVDNGV-LTVIVPKD 127 (144)
Q Consensus 105 ~vd~~~i~A~~~~Gi-L~I~~pk~ 127 (144)
.|+++.-.-.+++|- |.|+|.|.
T Consensus 58 ~I~~destWtled~k~l~I~L~K~ 81 (93)
T cd06494 58 SVVADECTWTLEDRKLIRIVLTKS 81 (93)
T ss_pred ccCcccCEEEEECCcEEEEEEEeC
Confidence 899998888898775 89999997
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.22 E-value=0.011 Score=39.83 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=59.7
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCC
Q 032282 28 ALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVK 107 (144)
Q Consensus 28 ~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd 107 (144)
|++.+.+..+.+.|.+.+|+ .++++|.+++ +.|.++|... ++. .+.-.+.|-..|+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~--------~g~-------------~y~~~l~l~~~I~ 57 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG--------DNV-------------KIYNEIELYDRVD 57 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC--------CCc-------------EEEEEEEeecccC
Confidence 67899999999999999999 5799999997 6899988322 011 2445677878899
Q ss_pred cCCeEEEEeCCEEEEEEecC
Q 032282 108 LDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 108 ~~~i~A~~~~GiL~I~~pk~ 127 (144)
++.-+.....--+.|.+.|+
T Consensus 58 pe~Sk~~v~~r~ve~~L~K~ 77 (106)
T cd00237 58 PNDSKHKRTDRSILCCLRKG 77 (106)
T ss_pred cccCeEEeCCceEEEEEEeC
Confidence 99777777677788889887
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.04 E-value=0.0055 Score=49.58 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=66.3
Q ss_pred CceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCC
Q 032282 27 TALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENV 106 (144)
Q Consensus 27 ~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~v 106 (144)
.++.+++++++.+.|.|.+.|+.++++.|.+.+ +.|.|+.... ....|...+.|-..|
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~---------------------~~~~y~~~~~L~~~I 213 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVP---------------------GEDAYHLQPRLFGKI 213 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecC---------------------CCcceeecccccccc
Confidence 477899999999999999999999999999996 6899976544 112355567898899
Q ss_pred CcCCeEEEEeCCEEEEEEecC
Q 032282 107 KLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 107 d~~~i~A~~~~GiL~I~~pk~ 127 (144)
+++..+.....--+.|+|.|.
T Consensus 214 ~p~~s~~~v~~~Kiei~l~K~ 234 (356)
T PLN03088 214 IPDKCKYEVLSTKIEIRLAKA 234 (356)
T ss_pred cccccEEEEecceEEEEEecC
Confidence 999988888777999999887
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.83 E-value=0.0076 Score=44.31 Aligned_cols=79 Identities=15% Similarity=0.306 Sum_probs=62.0
Q ss_pred CceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCC
Q 032282 27 TALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENV 106 (144)
Q Consensus 27 ~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~v 106 (144)
.++.|++++....+|.+-.+++.++++.|.+.+ +.|.+..+.. ... .|.-...|-..|
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~--~g~-------------------~~~l~~~L~~~I 60 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLP--SGS-------------------EYNLQLKLYHEI 60 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecC--Cch-------------------hhhhhHHhcccc
Confidence 568899999999999999999999999999996 7898876665 111 233444466778
Q ss_pred CcCCeEEEEeCCEEEEEEecC
Q 032282 107 KLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 107 d~~~i~A~~~~GiL~I~~pk~ 127 (144)
.++..+-..----++|+|+|.
T Consensus 61 ~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 61 IPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred cccceeeEeeeeeEEEEeccc
Confidence 888777776777788888885
No 39
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.04 E-value=0.21 Score=33.45 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=59.5
Q ss_pred CceeeEEEcCCeEEEEEEcC-CC-CCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCC
Q 032282 27 TALMDWLESPSAHIFKIDVP-GY-SRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPE 104 (144)
Q Consensus 27 ~~~~~i~e~~~~~~i~~~Lp-G~-~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~ 104 (144)
...+.+.++-+...|.+.|| |. +..+|.|.+.. +.|.|.-+.. .....+ +.. .|+.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~-------~~~~~~------------i~G--~L~~ 61 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDG-------GGEKVL------------MEG--EFTH 61 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecC-------CCCceE------------EeC--cccC
Confidence 46788999999999999999 54 67899999997 6899865421 000001 111 5788
Q ss_pred CCCcCCeEEEEeCC-EEEEEEecC
Q 032282 105 NVKLDQIKAHVDNG-VLTVIVPKD 127 (144)
Q Consensus 105 ~vd~~~i~A~~~~G-iL~I~~pk~ 127 (144)
.|+.+.-.-.+++| .|.|+|-|.
T Consensus 62 ~V~~des~Wtled~~~l~I~L~K~ 85 (102)
T cd06495 62 KINTENSLWSLEPGKCVLLSLSKC 85 (102)
T ss_pred cccCccceEEEeCCCEEEEEEEEC
Confidence 89999888889886 589999997
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.01 E-value=0.13 Score=33.25 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=54.4
Q ss_pred eEEEcCCeEEEEEEcC-C--CCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCC
Q 032282 31 DWLESPSAHIFKIDVP-G--YSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVK 107 (144)
Q Consensus 31 ~i~e~~~~~~i~~~Lp-G--~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd 107 (144)
.+.++.+...|.+.|| + .+..+++|.+.. +.|.|..+.. .. + -.=.|...|+
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~-----------~~------------~-i~G~L~~~V~ 56 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ-----------PP------------I-IDGELYNEVK 56 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC-----------ce------------E-EeCcccCccc
Confidence 3567788899999996 3 789999999997 6898843211 00 1 1225778899
Q ss_pred cCCeEEEEeCC-EEEEEEecC
Q 032282 108 LDQIKAHVDNG-VLTVIVPKD 127 (144)
Q Consensus 108 ~~~i~A~~~~G-iL~I~~pk~ 127 (144)
.+.-.-.+++| .|.|+|-|.
T Consensus 57 ~des~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 57 VEESSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred ccccEEEEeCCCEEEEEEEEC
Confidence 99888889886 899999987
No 41
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.39 E-value=0.41 Score=30.88 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=53.6
Q ss_pred eeEEEcCCeEEEEEEcCCC--CCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCC
Q 032282 30 MDWLESPSAHIFKIDVPGY--SRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVK 107 (144)
Q Consensus 30 ~~i~e~~~~~~i~~~LpG~--~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd 107 (144)
.|++++++...|.+...+. ...++.+.... +.|.|+-... ...|...+.|-..|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~----------------------~~~~~~~~~L~~~I~ 57 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG----------------------DKSYLLHLDLSNEVQ 57 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC----------------------CceEEEeeeccccCC
Confidence 4789999999999998854 44555566564 5788854322 112667778888888
Q ss_pred cCCeEEEE--eCCEEEEEEecC
Q 032282 108 LDQIKAHV--DNGVLTVIVPKD 127 (144)
Q Consensus 108 ~~~i~A~~--~~GiL~I~~pk~ 127 (144)
++. +..+ .-|-++|+|.|.
T Consensus 58 ~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 58 WPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CCc-EEEEcccCceEEEEEEcC
Confidence 775 5555 478999999998
No 42
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=88.27 E-value=4.4 Score=29.80 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=58.7
Q ss_pred CCceeeEEEcCCeEEEEEEcC-CC-CCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECC
Q 032282 26 STALMDWLESPSAHIFKIDVP-GY-SRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELP 103 (144)
Q Consensus 26 ~~~~~~i~e~~~~~~i~~~Lp-G~-~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP 103 (144)
..+.+.+..+=..+.|.+.+| |+ +..+|.|.+.. ++|.|.-+..+ . --.=.|.
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~-----------~-------------ildG~L~ 71 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQP-----------P-------------ILDGELS 71 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCC-----------c-------------eecCccc
Confidence 567888888888999999987 88 88999999996 78888533331 0 1122366
Q ss_pred CCCCcCCeEEEEeCCEEEEEEecC
Q 032282 104 ENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 104 ~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
..|+.+.-...+++|.+.|.+.++
T Consensus 72 ~~vk~des~WtiEd~k~i~i~l~K 95 (179)
T KOG2265|consen 72 HSVKVDESTWTIEDGKMIVILLKK 95 (179)
T ss_pred cccccccceEEecCCEEEEEEeec
Confidence 778888889999999888888776
No 43
>PF14913 DPCD: DPCD protein family
Probab=88.23 E-value=6.4 Score=29.36 Aligned_cols=80 Identities=11% Similarity=0.259 Sum_probs=58.4
Q ss_pred CCCCceeeEEEcCCeEEEEEEcCCCCCCCeEEEEec-CCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEEC
Q 032282 24 SGSTALMDWLESPSAHIFKIDVPGYSRENIKVQIED-GNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIEL 102 (144)
Q Consensus 24 ~~~~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~-g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~l 102 (144)
+..+|.+-=.++..+|..++.===+.++-.+|+++. +++++|+-..+ .|.+.|.+
T Consensus 83 Ss~nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtNK------------------------KYyKk~~I 138 (194)
T PF14913_consen 83 SSSNPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTNK------------------------KYYKKFSI 138 (194)
T ss_pred cCCCCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECcCc------------------------cceeEecC
Confidence 345666666778888888875444577888888883 35788853333 36688889
Q ss_pred CCC------CCcCCeEEEEeCCEEEEEEecC
Q 032282 103 PEN------VKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 103 P~~------vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
|+- .+.+.++....|..|.|+-.|.
T Consensus 139 PDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP 169 (194)
T PF14913_consen 139 PDLDRCGLPLEQSALSFAHQNNTLIISYKKP 169 (194)
T ss_pred CcHHhhCCCcchhhceeeeecCeEEEEecCc
Confidence 853 3667788899999999999876
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=87.40 E-value=1.6 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=31.2
Q ss_pred CcceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 92 GRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 92 ~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
-...|.-...|| .++++.|+..+.+|.|+|+.-++
T Consensus 6 ~~~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~ 40 (87)
T cd06482 6 DSSNVLASVDVC-GFEPDQVKVKVKDGKVQVSAERE 40 (87)
T ss_pred cCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 445788899999 89999999999999999999876
No 45
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=83.73 E-value=5.6 Score=25.52 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=29.9
Q ss_pred ceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 94 GDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 94 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
..|.-.+.|| .++.+.|+..++++.|+|+..+.
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~ 43 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKA 43 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4688899999 79999999999999999999877
No 46
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=80.46 E-value=4.3 Score=25.90 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=29.5
Q ss_pred ceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 94 GDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 94 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
..|.-.+.|| ++.++.|+..+++|.|+|+.-+.
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4688899998 89999999999999999999765
No 47
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=79.51 E-value=5.5 Score=25.28 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=29.9
Q ss_pred cceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 93 RGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 93 ~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
-..|.-.+.|| +++++.|+..+.++.|+|+.-+.
T Consensus 6 ~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 6 KDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred CceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 34688899999 99999999999999999999654
No 48
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=79.36 E-value=5 Score=25.70 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=29.9
Q ss_pred ceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 94 GDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 94 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
..|.-.+.|| .++++.|+..+++|.|+|+.-+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~ 39 (83)
T cd06477 7 PMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHG 39 (83)
T ss_pred ceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 3588899998 89999999999999999999876
No 49
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=78.59 E-value=4.7 Score=25.84 Aligned_cols=34 Identities=9% Similarity=0.219 Sum_probs=29.9
Q ss_pred cceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 93 RGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 93 ~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
-..|.-.+.|| +++++.|...+.+|.|+|+.-+.
T Consensus 9 ~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 9 RDKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 44688899998 89999999999999999998654
No 50
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=78.05 E-value=8.7 Score=23.18 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=34.4
Q ss_pred ceeeEE-EcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEec
Q 032282 28 ALMDWL-ESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGA 70 (144)
Q Consensus 28 ~~~~i~-e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~ 70 (144)
.++.+. -..+.|.|++..+|+..-.-.|.+..|....|+....
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred CcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 345666 4567999999999999998899998777888877654
No 51
>PRK10743 heat shock protein IbpA; Provisional
Probab=78.04 E-value=12 Score=26.29 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=27.4
Q ss_pred eEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 95 DFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 95 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
.|.-...|| +++.+.|...+++|.|+|+.-+.
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~ 77 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITAQDNLLVVKGAHA 77 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEC
Confidence 355677898 89999999999999999999765
No 52
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=77.34 E-value=5.4 Score=25.10 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.6
Q ss_pred eEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 95 DFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 95 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
.|.-.+.|| ++.++.|+..++++.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~ 39 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEe
Confidence 688999999 69999999999999999999876
No 53
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=76.90 E-value=6.5 Score=25.14 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.0
Q ss_pred cceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 93 RGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 93 ~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
-..|.-.+.|| .++.+.|+..+.++.|+|+.-+.
T Consensus 9 ~~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~ 42 (93)
T cd06471 9 DDEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRD 42 (93)
T ss_pred CCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 34678899999 79999999999999999999776
No 54
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=76.25 E-value=6.3 Score=25.06 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=30.0
Q ss_pred cceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 93 RGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 93 ~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
-..|.-.+.|| .++++.|....++|.|+|+.-|+
T Consensus 7 ~~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 7 GDTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred CCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 34688889999 89999999999999999998765
No 55
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=76.01 E-value=22 Score=27.91 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=67.0
Q ss_pred CCceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCC
Q 032282 26 STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPEN 105 (144)
Q Consensus 26 ~~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~ 105 (144)
..-+.|+..+++...|.+..-|.-++--.|..+ +..|.|.-... . .-.+|...+.|=.-
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean-~~~l~V~ivf~-------~-------------gna~fd~d~kLwgv 271 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEAN-GTTLHVSIVFG-------F-------------GNASFDLDYKLWGV 271 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeC-CeEEEEEEEec-------C-------------CCceeeccceeeee
Confidence 456779999999999999999999998888888 47888876653 1 23357788888777
Q ss_pred CCcCCeEEEEeCCEEEEEEecC
Q 032282 106 VKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 106 vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
|+.+..++.+-.--.+|+|+|.
T Consensus 272 vnve~s~v~m~~tkVEIsl~k~ 293 (320)
T KOG1667|consen 272 VNVEESSVVMGETKVEISLKKA 293 (320)
T ss_pred echhhceEEeecceEEEEEecc
Confidence 8999999999999999999998
No 56
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=75.82 E-value=10 Score=25.08 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCCCcCCCC--CCceeeEEEcCCeEEEEEEcCCC-----CCCCeEEEEecCCeEEE
Q 032282 17 PPVFREWSG--STALMDWLESPSAHIFKIDVPGY-----SRENIKVQIEDGNILRI 65 (144)
Q Consensus 17 ~~~~~~~~~--~~~~~~i~e~~~~~~i~~~LpG~-----~~e~i~v~i~~g~~L~I 65 (144)
..+-+.|.+ ..|++.|+++++.|.|.+--+.. +++...|.-.+| .|-|
T Consensus 13 ~~~~G~W~Sv~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI 67 (95)
T PF12992_consen 13 DKICGEWESVNGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFI 67 (95)
T ss_pred heeEEEeEccCCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEE
Confidence 444455544 67999999999999999877654 556666776654 5666
No 57
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=74.73 E-value=15 Score=23.40 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=28.7
Q ss_pred cceEEEEEECCCCCCcCCeEEEEeCC-EEEEEEecC
Q 032282 93 RGDFSREIELPENVKLDQIKAHVDNG-VLTVIVPKD 127 (144)
Q Consensus 93 ~~~f~r~~~lP~~vd~~~i~A~~~~G-iL~I~~pk~ 127 (144)
...|.-.+.|| +++++.|...+.+| .|+|+.-+.
T Consensus 8 ~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~ 42 (92)
T cd06472 8 PEAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERK 42 (92)
T ss_pred CCeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEec
Confidence 44688899999 68999999999765 999999765
No 58
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=72.78 E-value=16 Score=25.85 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=27.7
Q ss_pred eEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 95 DFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 95 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
.|.-...|| +++.+.|...+++|.|+|+.-+.
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~ 75 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPE 75 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 366678898 88999999999999999999765
No 59
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=72.57 E-value=8.3 Score=24.56 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=29.2
Q ss_pred ceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 94 GDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 94 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
..|.-.+.+| +++++.|.....++.|+|+.-+.
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4688899998 89999999999999999999654
No 60
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=72.30 E-value=15 Score=23.48 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=29.3
Q ss_pred ceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 94 GDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 94 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
..|.-.+.|| .+.++.|...++++.|+|+.-+.
T Consensus 7 d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (87)
T cd06481 7 EGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKRE 39 (87)
T ss_pred ceEEEEEECC-CCChHHeEEEEECCEEEEEEEEe
Confidence 3578899998 89999999999999999999765
No 61
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=71.46 E-value=11 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.0
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEecCCeEEEEE
Q 032282 37 SAHIFKIDVP-GYSRENIKVQIEDGNILRIIG 67 (144)
Q Consensus 37 ~~~~i~~~Lp-G~~~e~i~v~i~~g~~L~I~g 67 (144)
..|.=.+.|| +++.+.|+-.+..++.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4677789999 999999999999336999975
No 62
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=70.18 E-value=13 Score=23.77 Aligned_cols=34 Identities=6% Similarity=0.282 Sum_probs=30.4
Q ss_pred cceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 93 RGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 93 ~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
...|.-.+.|| .++++.|...+.++.|+|+.-+.
T Consensus 9 ~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06475 9 ADRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHE 42 (86)
T ss_pred CCeEEEEEECC-CCCHHHEEEEEECCEEEEEEEEC
Confidence 44688899999 99999999999999999999765
No 63
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=68.05 E-value=38 Score=23.55 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=51.3
Q ss_pred CCceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCC
Q 032282 26 STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPEN 105 (144)
Q Consensus 26 ~~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~ 105 (144)
....+.|...++ ..+++.. ..+.++++.++ +.|.|+.+.. ... ....+.... ....-.-.+.||..
T Consensus 64 ~~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~--~~~---~~~~~~~~~----~~~~~~i~I~lP~~ 129 (166)
T PF13349_consen 64 DNGDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDR--ESF---FFKGFNFNN----SDNKSKITIYLPKD 129 (166)
T ss_pred CceeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEecc--ccc---ccceEEEcc----cCCCcEEEEEECCC
Confidence 344555555443 4444444 21268888885 7999987732 000 011111100 02345668899999
Q ss_pred CCcCCeEEEEeCCEEEEEEec
Q 032282 106 VKLDQIKAHVDNGVLTVIVPK 126 (144)
Q Consensus 106 vd~~~i~A~~~~GiL~I~~pk 126 (144)
...+.+.....+|-++|.=.+
T Consensus 130 ~~l~~i~i~~~~G~i~i~~i~ 150 (166)
T PF13349_consen 130 YKLDKIDIKTSSGDITIEDIS 150 (166)
T ss_pred CceeEEEEEeccccEEEEccE
Confidence 988999999999999886443
No 64
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=67.55 E-value=18 Score=23.24 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=28.1
Q ss_pred cceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 93 RGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 93 ~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
...|.-.+.|| +++.+.|+-.+.++.|.|+.-+.
T Consensus 6 ~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 6 EDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 45688899999 88999999999999999998765
No 65
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=65.94 E-value=28 Score=25.69 Aligned_cols=78 Identities=12% Similarity=0.236 Sum_probs=55.5
Q ss_pred CCceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCC
Q 032282 26 STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPEN 105 (144)
Q Consensus 26 ~~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~ 105 (144)
..|.+.+.+..+-+.+.+.++.-+ +..|.++. .+|+++|+.. .... .+...+.|-..
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~~--d~~v~~e~-~~l~fs~k~~-------~d~~-------------~~~~~ief~~e 62 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDAK--DVHVNLEP-SKLTFSCKSG-------ADNH-------------KYENEIEFFDE 62 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccCc--cceeeccc-cEEEEEeccC-------CCce-------------eeEEeeehhhh
Confidence 457888888899999999988655 55566664 5899998875 1111 24566888888
Q ss_pred CCcCCeEEEEeCCEEEEEEecC
Q 032282 106 VKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 106 vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
||++..+-+-. +-+...++++
T Consensus 63 Idpe~sk~k~~-~r~if~i~~K 83 (180)
T KOG3158|consen 63 IDPEKSKHKRT-SRSIFCILRK 83 (180)
T ss_pred cCHhhcccccc-ceEEEEEEEc
Confidence 99998776665 6566666655
No 66
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=65.02 E-value=17 Score=22.27 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=29.5
Q ss_pred ceEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 94 GDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 94 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
..|.-.+.|| +++.+.|...+.++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~ 39 (88)
T cd06464 7 DAYVVEADLP-GFKKEDIKVEVEDGVLTISGERE 39 (88)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 4688899999 59999999999999999998776
No 67
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=64.92 E-value=25 Score=21.74 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=27.9
Q ss_pred ceEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 032282 94 GDFSREIELPENVKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 94 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 125 (144)
....-.|.+|..++.+.+...+.+.-|.|.+.
T Consensus 8 ~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 8 DEVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred CEEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 35667888999999999999999999999986
No 68
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=61.92 E-value=8.6 Score=23.16 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=12.0
Q ss_pred CCeEEEEeCCEEEEEEe
Q 032282 109 DQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 109 ~~i~A~~~~GiL~I~~p 125 (144)
..|.|.|+||+|+--=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 45899999999985433
No 69
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=61.43 E-value=13 Score=27.14 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=27.0
Q ss_pred EEEEEEcC-CCCCCCeEEEEecCCeEEEEEEec
Q 032282 39 HIFKIDVP-GYSRENIKVQIEDGNILRIIGEGA 70 (144)
Q Consensus 39 ~~i~~~Lp-G~~~e~i~v~i~~g~~L~I~g~~~ 70 (144)
|.=+..|| ||+++.|.-.+..++.|+|+|.+.
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKP 149 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCC
Confidence 33456788 999999999999667999999888
No 70
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=57.12 E-value=7.8 Score=30.82 Aligned_cols=81 Identities=22% Similarity=0.115 Sum_probs=59.4
Q ss_pred CCceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCC
Q 032282 26 STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPEN 105 (144)
Q Consensus 26 ~~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~ 105 (144)
...+.++-++.....|-+.-|-+..++|++.+. +|.|.|+-+... ...-+.-...|-..
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e-~NTL~I~~q~~~--------------------~~~~~~~~~~Ly~e 233 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLE-GNTLSISYQPRR--------------------LRLWNDITISLYKE 233 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeec-CCcceeeeeccc--------------------cchHHHhhhhhhhh
Confidence 455667778888888888889999999999999 589999766550 11124456677777
Q ss_pred CCcCCeEEEEeCCEEEEEEecC
Q 032282 106 VKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 106 vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
|.++..+-..--..+.|++.|.
T Consensus 234 v~P~~~s~k~fsK~~e~~l~KV 255 (368)
T COG5091 234 VYPDIRSIKSFSKRVEVHLRKV 255 (368)
T ss_pred cCcchhhhhhcchhheehhhhh
Confidence 8888776666557777777664
No 71
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=56.25 E-value=38 Score=22.04 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=29.2
Q ss_pred CcceEEEEEECCCCCCcCCeEEEEeCCEEEEEE
Q 032282 92 GRGDFSREIELPENVKLDQIKAHVDNGVLTVIV 124 (144)
Q Consensus 92 ~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~ 124 (144)
......-+|++|..+..+.+...+...-|+|.+
T Consensus 13 T~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 13 TMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EcCEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 444677889999999999999999999999998
No 72
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=54.76 E-value=38 Score=23.67 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=28.3
Q ss_pred eEEEEEECCCCCCcCCeEEEEeCCEEEEEEecC
Q 032282 95 DFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 95 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 127 (144)
.+.-.+.|| +++.+.|.-.+.++.|+|+.-+.
T Consensus 51 ~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~ 82 (146)
T COG0071 51 EYRITAELP-GVDKEDIEITVEGNTLTIRGERE 82 (146)
T ss_pred EEEEEEEcC-CCChHHeEEEEECCEEEEEEEec
Confidence 466688898 89999999999999999999887
No 73
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=51.73 E-value=35 Score=19.88 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=19.2
Q ss_pred CCCCCCCeEEEEecCCeEEEEEEec
Q 032282 46 PGYSRENIKVQIEDGNILRIIGEGA 70 (144)
Q Consensus 46 pG~~~e~i~v~i~~g~~L~I~g~~~ 70 (144)
++++..+|.|.+.+ +.+.|+|.-.
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~ 35 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVP 35 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEES
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCc
Confidence 46777789999996 5999999987
No 74
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=47.64 E-value=97 Score=22.63 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=29.2
Q ss_pred CCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 032282 50 RENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 50 ~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 125 (144)
+++|+|++++ +.|+|+|.+- ... ..||. .+....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G------------------------~l~--~~~~~-----~v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKG------------------------TLS--RKIPD-----LITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCE------------------------EEE--EECCC-----CeEEEEeCCEEEEEcC
Confidence 5788999985 7899976544 233 44554 3455668887777654
No 75
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=43.44 E-value=1.3e+02 Score=22.10 Aligned_cols=45 Identities=20% Similarity=0.455 Sum_probs=30.4
Q ss_pred CCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 032282 50 RENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 50 ~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 125 (144)
+++++|++++ +.++++|.+- ..++.|.-| .+....++|.|.|...
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G------------------------~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKG------------------------ELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCe------------------------EEEEEecCC------cEEEEEECCEEEEEEC
Confidence 6788999995 7899976544 444444322 4566778888777754
No 76
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=42.81 E-value=83 Score=19.63 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=26.6
Q ss_pred ceEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 032282 94 GDFSREIELPENVKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 94 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 125 (144)
....-.|.+|..+..+.++..++..-|.|.+.
T Consensus 8 ~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06493 8 EDLTLTIRLPEDTTKEDIRIKFLPDHISIALK 39 (85)
T ss_pred CEEEEEEECCCCCChhhEEEEEecCEEEEEeC
Confidence 35667888999999999999998888888774
No 77
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=38.18 E-value=1.6e+02 Score=21.46 Aligned_cols=44 Identities=27% Similarity=0.544 Sum_probs=30.1
Q ss_pred CCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 032282 50 RENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 50 ~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 125 (144)
+++|+|++++ +.|+|+|.+- ..++.| |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G------------------------~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKG------------------------ELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCe------------------------EEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 5789999985 7899976544 444444 43 4556678888777754
No 78
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=35.81 E-value=43 Score=22.36 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.3
Q ss_pred cCCeEEEEeCCEEEEEEecC
Q 032282 108 LDQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 108 ~~~i~A~~~~GiL~I~~pk~ 127 (144)
...+.+.+.+|+|+|+++..
T Consensus 27 ~~d~D~e~~~gVLti~f~~~ 46 (105)
T cd00503 27 DADIDVETQGGVLTLTFGNG 46 (105)
T ss_pred ccCEeeeccCCEEEEEECCC
Confidence 35678889999999999843
No 79
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=35.69 E-value=1.2e+02 Score=19.29 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=27.0
Q ss_pred cceEEEEEECCCC--CCcCCeEEEEeCCEEEEEEe
Q 032282 93 RGDFSREIELPEN--VKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 93 ~~~f~r~~~lP~~--vd~~~i~A~~~~GiL~I~~p 125 (144)
.....-.|+||.+ ++.+.++..++..-|+|.+.
T Consensus 7 ~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~ 41 (87)
T cd06492 7 LSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK 41 (87)
T ss_pred cCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC
Confidence 3445667889877 88999999999999999884
No 80
>PRK10568 periplasmic protein; Provisional
Probab=35.64 E-value=1.2e+02 Score=22.47 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCCCCCCeEEEEecCCeEEEEEEec
Q 032282 46 PGYSRENIKVQIEDGNILRIIGEGA 70 (144)
Q Consensus 46 pG~~~e~i~v~i~~g~~L~I~g~~~ 70 (144)
++++..+|+|.+.+| .+.+.|.-.
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~ 96 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVE 96 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeC
Confidence 567778899999974 899999987
No 81
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=35.17 E-value=1.8e+02 Score=21.18 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=30.2
Q ss_pred CCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 032282 50 RENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 50 ~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 125 (144)
+++++|++++ +.++|+|.+- ...+.|. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G------------------------~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKG------------------------EVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCe------------------------EEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 5788999995 7899976544 3444442 32 4566678888888754
No 82
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=34.30 E-value=1.8e+02 Score=21.13 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 032282 50 RENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 50 ~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 125 (144)
|++|+|++++ +.|+|+|.+- ...+.| |. .+....+++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G------------------------~l~~~~--~~-----~v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKG------------------------ELSRTL--NP-----DVTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCE------------------------EEEEEc--CC-----CeEEEEECCEEEEEcC
Confidence 5789999995 7899976544 455555 43 3455668887777754
No 83
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=34.20 E-value=71 Score=20.21 Aligned_cols=43 Identities=7% Similarity=0.240 Sum_probs=26.1
Q ss_pred CCccEEEEeecCCCcceEEEEEECCCCCCcCC-eEEEEeCCEE-EEEE
Q 032282 79 KETVWHVAERRAGGRGDFSREIELPENVKLDQ-IKAHVDNGVL-TVIV 124 (144)
Q Consensus 79 ~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~-i~A~~~~GiL-~I~~ 124 (144)
.-+.|..... ...=+.|.|.+|+...+.. +.-.|.+|-+ .|.-
T Consensus 29 ~pG~y~~~g~---~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 29 RPGEYSRSGN---RIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp STTEEEEETT---EEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECC---EEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 3344554443 5556899999999987666 8888877744 4554
No 84
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=32.96 E-value=2e+02 Score=21.25 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=15.9
Q ss_pred CCCeEEEEecCCeEEEEEEec
Q 032282 50 RENIKVQIEDGNILRIIGEGA 70 (144)
Q Consensus 50 ~e~i~v~i~~g~~L~I~g~~~ 70 (144)
+++++|++++ +.|+|+|.+-
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG 31 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRG 31 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCc
Confidence 5789999995 7899976554
No 85
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=32.28 E-value=68 Score=21.45 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.2
Q ss_pred CCeEEEEeCCEEEEEEecC
Q 032282 109 DQIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 109 ~~i~A~~~~GiL~I~~pk~ 127 (144)
..+.+.+.+|+|+|.++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 4688999999999999754
No 86
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=31.98 E-value=52 Score=21.88 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.1
Q ss_pred CeEEEEeCCEEEEEEecC
Q 032282 110 QIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 110 ~i~A~~~~GiL~I~~pk~ 127 (144)
.+.+.+.+|+|+|+++..
T Consensus 26 d~D~e~~~gVLti~f~~~ 43 (102)
T TIGR03421 26 DIDCERAGGVLTLTFENG 43 (102)
T ss_pred CeeeecCCCEEEEEECCC
Confidence 478888999999999854
No 87
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=31.73 E-value=54 Score=21.95 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.2
Q ss_pred CeEEEEeCCEEEEEEecC
Q 032282 110 QIKAHVDNGVLTVIVPKD 127 (144)
Q Consensus 110 ~i~A~~~~GiL~I~~pk~ 127 (144)
.+.+.+.+|+|+|+++..
T Consensus 28 d~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 28 DIDCERNGGVLTLTFENG 45 (105)
T ss_pred CeeeeccCCEEEEEECCC
Confidence 377889999999999865
No 88
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=31.48 E-value=1.6e+02 Score=21.62 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=27.7
Q ss_pred CCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCC
Q 032282 49 SRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPEN 105 (144)
Q Consensus 49 ~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~ 105 (144)
++++++|+ +| .|+|++.+....... -.++...+++. -.+|.|+-++.+|..
T Consensus 30 ~~~nv~v~--~g-~L~l~~~~~~~~~~~-~tsg~i~S~~~--f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEFS--DG-GLALTLTNDTYGEKP-YACGEYRTRGF--YGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEEE--CC-eEEEEEeCCcCCCCc-cccceEEECce--EEeeEEEEEEEcCCC
Confidence 45666655 54 799998776211000 11222222111 267889999999853
No 89
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=31.46 E-value=2.2e+02 Score=21.12 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=31.3
Q ss_pred CCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEEEeCCEEEEEEe
Q 032282 49 SRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 49 ~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 125 (144)
=|++++|++++ +.++|+|.+- ..++.|.=| . ..+....++|.|.|..+
T Consensus 12 IP~~V~V~i~~-~~v~VkGp~G------------------------~L~~~~~~~-~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVKS-RKVTVTGKYG------------------------ELTRSFRHL-P---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEEC-CEEEEECCCc------------------------eEEEEecCC-C---ceEEEEeCCCEEEEEeC
Confidence 36899999995 7889876544 444444321 1 24666778888777754
No 90
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=31.39 E-value=1.3e+02 Score=18.49 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=29.9
Q ss_pred CCCceeeEEEcCCeEEEEEEcC-CCCCCCeEEEEe--cCCeEEEE
Q 032282 25 GSTALMDWLESPSAHIFKIDVP-GYSRENIKVQIE--DGNILRII 66 (144)
Q Consensus 25 ~~~~~~~i~e~~~~~~i~~~Lp-G~~~e~i~v~i~--~g~~L~I~ 66 (144)
..+.|..+.+.++.++|.-.|| +..--...|.+. ||+.|.+.
T Consensus 19 ~~ekP~~v~~~~~~WiV~Gtl~~~~~GGv~~I~I~K~dgkVl~v~ 63 (66)
T PF15631_consen 19 EEEKPYRVTLDGDSWIVEGTLPPGMLGGVFYIEIRKKDGKVLNVT 63 (66)
T ss_pred hhcCCeEEecCCCeEEEEeecCCCccCCeEEEEEEccCCeEEEEE
Confidence 4677889999999999999997 544444444444 66666653
No 91
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=31.36 E-value=85 Score=18.57 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=17.9
Q ss_pred EEcCCCCCC-CeEEEEecCCeEEEE
Q 032282 43 IDVPGYSRE-NIKVQIEDGNILRII 66 (144)
Q Consensus 43 ~~LpG~~~e-~i~v~i~~g~~L~I~ 66 (144)
++-.||... .|+|++.+ +.|+|+
T Consensus 33 L~~aGF~~G~~v~V~v~~-g~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMP-GCLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEEC-CEEEEe
Confidence 455788664 69999998 489986
No 92
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=30.74 E-value=25 Score=25.20 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=17.9
Q ss_pred CCCCcCCeEEEEeCCEEEEEEec
Q 032282 104 ENVKLDQIKAHVDNGVLTVIVPK 126 (144)
Q Consensus 104 ~~vd~~~i~A~~~~GiL~I~~pk 126 (144)
+.+..+.--+.|.||+|+|.++-
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred hhcCccccccccccceEEEEecC
Confidence 44555667788999999999974
No 93
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=29.80 E-value=59 Score=19.69 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=8.7
Q ss_pred EEEECCCCCCcCCeE
Q 032282 98 REIELPENVKLDQIK 112 (144)
Q Consensus 98 r~~~lP~~vd~~~i~ 112 (144)
++|.||+.++.+.++
T Consensus 25 ksy~lp~ef~~~~L~ 39 (61)
T PF07076_consen 25 KSYKLPEEFDFDGLK 39 (61)
T ss_pred CEEECCCcccccccC
Confidence 356677666655443
No 94
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=28.49 E-value=79 Score=19.02 Aligned_cols=29 Identities=17% Similarity=0.500 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCCCCe-EEEEecCCeEEE
Q 032282 37 SAHIFKIDVPGYSRENI-KVQIEDGNILRI 65 (144)
Q Consensus 37 ~~~~i~~~LpG~~~e~i-~v~i~~g~~L~I 65 (144)
+.|.|.+..+|+..... .|.+..|+...|
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 67999999999988887 588886555554
No 95
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=28.17 E-value=55 Score=20.37 Aligned_cols=35 Identities=9% Similarity=0.337 Sum_probs=25.1
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEE
Q 032282 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRI 65 (144)
Q Consensus 31 ~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I 65 (144)
.|.+..+.|.|++.+=|+....|.+.-.+|..+.|
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i~V 48 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKIAV 48 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS-EEEE
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCCeEEEe
Confidence 46666779999999999998899999988755544
No 96
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=26.12 E-value=1.6e+02 Score=17.72 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=29.2
Q ss_pred CCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEE--EeCCEEEEEEe
Q 032282 50 RENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAH--VDNGVLTVIVP 125 (144)
Q Consensus 50 ~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~--~~~GiL~I~~p 125 (144)
++.++|++++ +.+.+.|... ..++.+|.. +... .+++.+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g--------------------------~l~~~~~~~-----v~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKG--------------------------ELSRPIPPG-----VKVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSSS--------------------------EEEEEETTT-----EEEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCE--------------------------eEEEECCCC-----eeEEEEcCCCceEEEEC
Confidence 4678999995 7888866544 246667744 4455 56777777654
No 97
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=26.06 E-value=1.4e+02 Score=22.31 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=32.6
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEec
Q 032282 30 MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGA 70 (144)
Q Consensus 30 ~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~ 70 (144)
+.|-..++-.-+.+.|-|+..+++.|++.. +.|-|....-
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dl 116 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDL 116 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeec
Confidence 456667778889999999999999999996 6888865443
No 98
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=25.39 E-value=2.8e+02 Score=20.45 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=16.9
Q ss_pred CCCCCeEEEEecCCeEEEEEEec
Q 032282 48 YSRENIKVQIEDGNILRIIGEGA 70 (144)
Q Consensus 48 ~~~e~i~v~i~~g~~L~I~g~~~ 70 (144)
.-+++++|+++ |+.++++|-+-
T Consensus 10 ~~P~gV~V~i~-~~~v~vkGpkG 31 (178)
T COG0097 10 VIPAGVTVSIE-GQVVTVKGPKG 31 (178)
T ss_pred ecCCCeEEEEe-ccEEEEECCCc
Confidence 34889999999 57899876543
No 99
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=24.19 E-value=2.3e+02 Score=19.10 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=28.6
Q ss_pred ceEEEEEECCCCC-CcCCeEEEEeCCEEEEEEecCCCCCCCCcEEEeeeec
Q 032282 94 GDFSREIELPENV-KLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINITSK 143 (144)
Q Consensus 94 ~~f~r~~~lP~~v-d~~~i~A~~~~GiL~I~~pk~~~~~~~~~~~I~I~~~ 143 (144)
.+++.-+....++ +...++-.+++.+|-...|+- ..++|.|++|
T Consensus 44 ~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~------~~~~I~Vq~G 88 (113)
T cd01759 44 NTYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKV------GAEKITVQSG 88 (113)
T ss_pred CEEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeE------EEEEEEEEeC
Confidence 3556666666565 555567777888776656655 3478888876
No 100
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=23.84 E-value=60 Score=21.41 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.2
Q ss_pred EEEEeCCEEEEEEecC
Q 032282 112 KAHVDNGVLTVIVPKD 127 (144)
Q Consensus 112 ~A~~~~GiL~I~~pk~ 127 (144)
.+.+.+|+|+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6778999999999654
No 101
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=23.67 E-value=2.1e+02 Score=21.86 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=27.5
Q ss_pred CCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEe---ecCCCcceEEEEEECCCC
Q 032282 50 RENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAE---RRAGGRGDFSREIELPEN 105 (144)
Q Consensus 50 ~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e---~~~~~~~~f~r~~~lP~~ 105 (144)
++++ .+.+| .|+|++.+...... .....|.+-. +..-.+|.|+-++.||..
T Consensus 57 ~~nv--~v~~G-~L~i~a~~~~~~~~--~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 57 ADNV--SVEDG-NLVLSATRHPGTEL--GNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred cCCe--EEECC-EEEEEEEcCCCCcC--CCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 3454 55665 89999988821100 1111222100 112367889999999853
No 102
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=23.44 E-value=1.9e+02 Score=17.75 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=33.1
Q ss_pred CceeeEEEcCCeEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCccccccCCccEEEEeecCCCcceEEEEEEC
Q 032282 27 TALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIEL 102 (144)
Q Consensus 27 ~~~~~i~e~~~~~~i~~~LpG~~~e~i~v~i~~g~~L~I~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~f~r~~~l 102 (144)
.|.+.|+..+....+...-+......+.+.- + +.|+|..... ++.+.|.+.-.+ ..|....++.|
T Consensus 15 ~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-~-~~L~I~~v~~-------~D~G~Y~C~a~N--~~G~~~~~~~l 79 (90)
T cd05726 15 QPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-T-GDLTITNVQR-------SDVGYYICQTLN--VAGSILTKAYL 79 (90)
T ss_pred CCEEEEEeCCCcceeecccCCCCCCeEEECC-C-CeEEEeeCCh-------hhCEEEEEEEEc--CCCceEEEEEE
Confidence 4567776665543322111112223344432 3 4799976666 667788876541 34444444433
No 103
>PF13141 DUF3979: Protein of unknown function (DUF3979)
Probab=23.15 E-value=2.3e+02 Score=18.70 Aligned_cols=54 Identities=11% Similarity=0.275 Sum_probs=33.7
Q ss_pred cCCccEEEEeecCCCcceEEEEEECCCCCCcCCeEEEE---eCCEEEEEEecCCCCCCCCcEEEee
Q 032282 78 TKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHV---DNGVLTVIVPKDANHKKSSVRNINI 140 (144)
Q Consensus 78 ~~~~~~~~~e~~~~~~~~f~r~~~lP~~vd~~~i~A~~---~~GiL~I~~pk~~~~~~~~~~~I~I 140 (144)
..++.|..+|. .+ .+.+-..+-.+.+++.+ +-+.++|++=|. ...-..-++|.|
T Consensus 13 k~gwkyiiqe~----n~----~y~iv~~~~~~~msvelyfneyde~ritlyk~-g~pittmqriai 69 (114)
T PF13141_consen 13 KGGWKYIIQEQ----NG----KYSIVNEILKEHMSVELYFNEYDEVRITLYKD-GNPITTMQRIAI 69 (114)
T ss_pred CCCcEEEEEEc----CC----cEEehHHHhhhceeeEEEecccceEEEEEEeC-CCchhheeeeee
Confidence 45678887876 23 33455566666777664 557889998876 443334455554
No 104
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=22.74 E-value=1.3e+02 Score=21.06 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.9
Q ss_pred CCCCCCCeEEEEecCCeEEEEEEec
Q 032282 46 PGYSRENIKVQIEDGNILRIIGEGA 70 (144)
Q Consensus 46 pG~~~e~i~v~i~~g~~L~I~g~~~ 70 (144)
.|+...++.|.+++ +.++++|.-.
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~ 61 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAA 61 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeC
Confidence 57788889999997 5999999988
No 105
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=22.14 E-value=3.3e+02 Score=20.12 Aligned_cols=57 Identities=21% Similarity=0.160 Sum_probs=30.6
Q ss_pred cCCCCCCCeEEEEecCCeEEEEEEecCCc---cccccCCccEEEEeecCCCcceEEEEEECCCC
Q 032282 45 VPGYSRENIKVQIEDGNILRIIGEGAKDK---EEANTKETVWHVAERRAGGRGDFSREIELPEN 105 (144)
Q Consensus 45 LpG~~~e~i~v~i~~g~~L~I~g~~~~~~---~~~~~~~~~~~~~e~~~~~~~~f~r~~~lP~~ 105 (144)
+..++++++.|+ + +.|+|++.+.... ... -..+...++.+....+|.|+-++.+|..
T Consensus 32 ~~~~~~~nv~v~--~-G~L~i~~~~~~~~~~~~~~-~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 32 YYTYRPENAYVE--D-GNLVITARKEPDKGGDGYP-YTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred EEeCCCCCeEEE--C-CEEEEEEEECCCCCCCccc-EEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 334566776654 5 4899998877211 000 1111222211112267889999999854
No 106
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=21.78 E-value=94 Score=19.23 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=18.4
Q ss_pred CCCCCCceeeEEEcCCeEEEEEEcCC
Q 032282 22 EWSGSTALMDWLESPSAHIFKIDVPG 47 (144)
Q Consensus 22 ~~~~~~~~~~i~e~~~~~~i~~~LpG 47 (144)
.+..|.+.+.+...++.|.+.+.||-
T Consensus 20 ~F~~W~~~~pm~~~~~~~~~~~~L~~ 45 (79)
T cd02859 20 SFDNWKKKIPLEKSGKGFSATLRLPP 45 (79)
T ss_pred EcCCCCccccceECCCCcEEEEEcCC
Confidence 45556656777777777888888873
No 107
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=21.78 E-value=2.9e+02 Score=19.63 Aligned_cols=28 Identities=7% Similarity=0.263 Sum_probs=23.7
Q ss_pred cCCeEEEEEEcCCC---CCCCeEEEEecCCe
Q 032282 35 SPSAHIFKIDVPGY---SRENIKVQIEDGNI 62 (144)
Q Consensus 35 ~~~~~~i~~~LpG~---~~e~i~v~i~~g~~ 62 (144)
-.+.|++.+..|.+ ....|.|.+..|+.
T Consensus 47 ~~N~yt~~~~aPd~~~~pag~V~v~v~~~g~ 77 (142)
T PF14545_consen 47 WENPYTLQFKAPDFCLEPAGSVNVRVYCDGV 77 (142)
T ss_pred EECCEEEEEECchhcCCCCceEEEEEEECCE
Confidence 34789999999999 88899999996543
No 108
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=21.50 E-value=71 Score=19.21 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.7
Q ss_pred CCCCCeEEEEecCCeEEEEEEec
Q 032282 48 YSRENIKVQIEDGNILRIIGEGA 70 (144)
Q Consensus 48 ~~~e~i~v~i~~g~~L~I~g~~~ 70 (144)
|+.+.|.|.... +.|.|+|+.-
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECceE
Confidence 467778888886 4888888865
No 109
>PRK14282 chaperone protein DnaJ; Provisional
Probab=21.48 E-value=4.5e+02 Score=21.37 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=14.6
Q ss_pred CCCCcCCeEEEEeCC-EEEEEEecC
Q 032282 104 ENVKLDQIKAHVDNG-VLTVIVPKD 127 (144)
Q Consensus 104 ~~vd~~~i~A~~~~G-iL~I~~pk~ 127 (144)
+.+-...+....-+| .|+|.+|+.
T Consensus 288 eAl~G~~~~i~~ldG~~i~v~Ip~g 312 (369)
T PRK14282 288 QAILGTTVEVPLPEGGTTMLKIPPG 312 (369)
T ss_pred HHhCCCEEEEeCCCCcEEEEEeCCC
Confidence 334444455554456 689999865
No 110
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=21.27 E-value=2.6e+02 Score=18.47 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=29.0
Q ss_pred CcceEEEEEECCCC-CCcCCeEEEEeCCEEEEEEe
Q 032282 92 GRGDFSREIELPEN-VKLDQIKAHVDNGVLTVIVP 125 (144)
Q Consensus 92 ~~~~f~r~~~lP~~-vd~~~i~A~~~~GiL~I~~p 125 (144)
......-.|+||.. +..+.+.+.+...-|+|.+.
T Consensus 12 Tl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~ 46 (102)
T cd06495 12 DYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVR 46 (102)
T ss_pred ECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEe
Confidence 45577889999998 46888999999999999995
No 111
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=20.96 E-value=2.2e+02 Score=18.35 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=28.2
Q ss_pred EEEcCCeEEEEEEc-CCCCCCCeEEEEecC-CeEEEEEEecCC
Q 032282 32 WLESPSAHIFKIDV-PGYSRENIKVQIEDG-NILRIIGEGAKD 72 (144)
Q Consensus 32 i~e~~~~~~i~~~L-pG~~~e~i~v~i~~g-~~L~I~g~~~~~ 72 (144)
|.+++++++|.+.+ |+-+++.|. -+.++ +.|.|+-.-.++
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i~-g~~~~~~~Lki~v~ApP~ 42 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSIV-GYNEWRKRVEVKIKAPPV 42 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCcceec-cccCCCCeEEEEEecCCC
Confidence 35677888888888 798888874 34531 478887776643
Done!