RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 032282
(144 letters)
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 125 bits (316), Expect = 1e-38
Identities = 48/97 (49%), Positives = 64/97 (65%), Gaps = 6/97 (6%)
Query: 30 MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERR 89
+DW E+P AH+FK DVPG +E++KV++EDG +LRI GE K++E+ WH ER
Sbjct: 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDD---WHRVER- 57
Query: 90 AGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPK 126
G F R LPEN D++KA ++NGVLTV VPK
Sbjct: 58 --SSGRFVRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 91.1 bits (227), Expect = 5e-25
Identities = 40/96 (41%), Positives = 60/96 (62%), Gaps = 8/96 (8%)
Query: 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRA 90
D E+ A++ + D+PG+ +E+IKV++ED +L I GE +EE +E + ER
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGE----REEEEEEEENYLRRERSY 55
Query: 91 GGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPK 126
G FSR LPE+V D+IKA ++NGVLT+ +PK
Sbjct: 56 G---SFSRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 90.3 bits (225), Expect = 1e-24
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 31 DWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRA 90
D E A + K+DVPG+ E +KV++ED +L + G+ K++E+ + +ER
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVL-VKGKHEKEEEDDH-----GLRSERS- 53
Query: 91 GGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINIT 141
FSR+ LPEN D++KA + +GVLTV VPK + R I I
Sbjct: 54 --YRSFSRKFVLPENADPDKVKASLKDGVLTVTVPK-LEPPEKKPRRIQIQ 101
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 73.0 bits (180), Expect = 4e-18
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 15/95 (15%)
Query: 32 WLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAG 91
W ++ + +D+PG +E+IKV++ED N+L I G+ +++E ER G
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEER-----------ERSYG 48
Query: 92 GRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPK 126
+F R ELPE+V ++ KA ++NGVL + +PK
Sbjct: 49 ---EFERSFELPEDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 71.6 bits (176), Expect = 7e-17
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 11 RRFFMSPPVFREWSGSTALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGA 70
R F + T +D E+ + ++PG +E+I++ +E GN L I GE
Sbjct: 24 RLFREFGNLPESRPTGTPPVDIEETDDEYRITAELPGVDKEDIEITVE-GNTLTIRGER- 81
Query: 71 KDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANH 130
+EE +E + ER G +F R LPE V + IKA NG+LTV +PK
Sbjct: 82 --EEEEEEEEEGYLRRERAYG---EFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEP- 135
Query: 131 KKSSVRNINI 140
++ + I I
Sbjct: 136 EEKKPKRIEI 145
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 69.8 bits (172), Expect = 1e-16
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 34 ESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGR 93
E+ +I + D+PG+ +E+IK+ +DG L I + + K+E + K ER G
Sbjct: 7 ETDDEYIVEADLPGFKKEDIKLDYKDGY-LTISAKRDESKDEKDKKGNYIR-RERYYG-- 62
Query: 94 GDFSREIELPENVKLDQIKAHVDNGVLTVIVPK 126
FSR LP NV ++IKA +NGVL + +PK
Sbjct: 63 -SFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93
Score = 25.5 bits (57), Expect = 5.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 99 EIELPENVKLDQIKAHVDNGVLTVIVPKDANH 130
E +LP K + IK +G LT+ +D +
Sbjct: 15 EADLP-GFKKEDIKLDYKDGYLTISAKRDESK 45
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 45.6 bits (109), Expect = 2e-07
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 42 KIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIE 101
+DV G+ E +KV++ D ++ + G+ EE + H R +F+R +
Sbjct: 12 TLDVKGFKPEELKVKVSDNKLV-VEGK----HEEREDE----HGYVSR-----EFTRRYQ 57
Query: 102 LPENVKLDQIKAH-VDNGVLTVIVPK 126
LPE V D + + +GVLT+ PK
Sbjct: 58 LPEGVDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 41.7 bits (99), Expect = 5e-06
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 45 VPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPE 104
V G+S +++++++E+ N L + G K +E N + H R + F R L +
Sbjct: 19 VAGFSEDDLEIEVEN-NQLTVTG---KKADEENEEREYLH----RGIAKRAFERSFNLAD 70
Query: 105 NVKLDQIKAHVDNGVLTV 122
+VK+ A ++NG+LT+
Sbjct: 71 HVKVKG--AELENGLLTI 86
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB9 and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB9 is
expressed exclusively in the normal testis and in
various tumor samples and is a cancer/testis antigen.
hHspB9 interacts with TCTEL1 (T-complex testis
expressed protein -1), a subunit of dynein. hHspB9 and
TCTEL1 are co-expressed in similar cells within the
testis and in tumor cells. Included in this group is
Xenopus Hsp30, a developmentally-regulated
heat-inducible molecular chaperone.
Length = 87
Score = 30.8 bits (70), Expect = 0.075
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 42 KIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIE 101
K+DV G+S E++ V++ DG L + G+ ++K+ + K + + + +F RE +
Sbjct: 12 KLDVRGFSPEDLSVRV-DGRKLVVTGK--REKKNEDEKGSFSYEYQ-------EFVREAQ 61
Query: 102 LPENV 106
LPE+V
Sbjct: 62 LPEHV 66
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 28.0 bits (63), Expect = 1.8
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 21 REWSGSTALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNIL---RIIGEGAKDKEE 75
R + WLE +D + E +IE ++L ++I A + E
Sbjct: 427 RTEQSLSEAKRWLEKYGVRNMILDHDALTNE----EIELSHMLTVAKLIVVSALQRTE 480
>gnl|CDD|222062 pfam13349, DUF4097, Domain of unknown function (DUF4097).
Length = 166
Score = 26.9 bits (60), Expect = 3.2
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 51 ENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRA----------GGRGDFSR-E 99
+ V+I+ G+ +I K + + ++ GD S+
Sbjct: 64 SSADVEIKPGDDSKIKVTYKGKKLKVKVNGGTLTITQKEKKNIFFGGFNFNNSGDKSKIT 123
Query: 100 IELPENVKLDQIKAHVDNGVLTV 122
I +P+ KL+ +K +G + +
Sbjct: 124 IYVPKKYKLNTLKIKTSSGDIDI 146
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 676
Score = 27.0 bits (60), Expect = 4.2
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 24 SGSTALMDWLESPSAHIFKIDVPGYSRENI----KVQIEDGNILRIIGEG 69
SG A L +I +D GYSR+ K + G IG G
Sbjct: 9 SGLGASQTALAVTGNNIANVDTAGYSRQQTVQTTKASQQSGAGY--IGTG 56
>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed.
Length = 180
Score = 26.3 bits (59), Expect = 4.5
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 98 REIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINIT 141
EIE+PE V ++ ++ V+TV PK + + I+
Sbjct: 8 EEIEIPEGVTVE-----IEGLVVTVKGPKGELTRDFWYPGVTIS 46
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain. This family consists of
the C terminal region form the DnaJ protein. Although
the function of this region is unknown, it is always
found associated with pfam00226 and pfam00684. DnaJ is a
chaperone associated with the Hsp70 heat-shock system
involved in protein folding and renaturation after
stress.
Length = 81
Score = 25.2 bits (56), Expect = 6.0
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 24/81 (29%)
Query: 41 FKIDVPGYSRENIKVQIED----GNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGD- 95
++VP +K++I G+ LRI G+G + GRGD
Sbjct: 17 GTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPIN--------------KGGNGRGDL 62
Query: 96 ---FSREIELPENVKLDQIKA 113
+++P+ + +Q +
Sbjct: 63 IVTL--NVKIPKKLSSEQKEL 81
>gnl|CDD|184464 PRK14031, PRK14031, glutamate dehydrogenase; Provisional.
Length = 444
Score = 26.4 bits (58), Expect = 6.1
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 44 DVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELP 103
D G RE + +E N+ R + +E A + R G +GD +
Sbjct: 266 DPDGIDREKLDYIMELKNLYR-----GRIREYAEKYGCKYVEGARPWGEKGDIALPSATQ 320
Query: 104 ENVKLDQIKAHVDNGVLTV 122
+ D + V NGV+ V
Sbjct: 321 NELNGDDARQLVANGVIAV 339
>gnl|CDD|233031 TIGR00577, fpg, formamidopyrimidine-DNA glycosylase (fpg). All
proteins in the FPG family with known functions are
FAPY-DNA glycosylases that function in base excision
repair. Homologous to endonuclease VIII (nei). This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 272
Score = 26.1 bits (58), Expect = 6.5
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 98 REIE-LPENVKLDQIKAHVDNGVLTVIVPKDAN 129
R +E L + ++ + N VL P+D
Sbjct: 11 RGLEPLVLGKTIKSVEVVLRNPVLRPAGPEDLQ 43
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
This family consists largely of 1-phosphofructokinases,
but also includes tagatose-6-kinases and
6-phosphofructokinases.
Length = 303
Score = 26.0 bits (58), Expect = 7.6
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 43 IDVPGYSRENIKVQIEDGNILRIIGEGAK-DKEEAN 77
++V G +R N+K++ G + G + +EE
Sbjct: 80 VEVKGETRINVKIKESSGEETELNEPGPEISEEELE 115
>gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein. The OPT
family of oligopeptide transporters is distinct from the
ABC pfam00005 and PTR pfam00854 transporter families.
OPT transporters were first recognised in fungi (Candida
albicans and Schizosaccharomyces pombe), but this
alignment also includes orthologues from Arabidopsis
thaliana. OPT transporters are thought to have 12-14
transmembrane domains and contain the following motif:
SPYxEVRxxVxxxDDP.
Length = 619
Score = 26.1 bits (58), Expect = 7.7
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
Query: 1 MAGDFFGY----PFRRFFMSPPVFREWSGSTALMDWLESPSAHIFK-IDVPGYSRENIK 54
++ G P RRF + PP SG +A + K + PG +E
Sbjct: 113 LSTQLLGVGFAGPLRRFLVYPPKLPFPSG---------LATAELLKALHTPGGWKEAKS 162
>gnl|CDD|187839 cd09708, Csf4_U, CRISPR/Cas system-associated DinG family helicase
Csf4. CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
DinG family DNA helicase.
Length = 632
Score = 26.1 bits (57), Expect = 8.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 11 RRFFMSPPVFREWSGSTALMDWLESPSAHIFKI 43
RF +S PV + G L WLE+ S I
Sbjct: 450 ARFLLSRPVGKTEQGDANLAGWLENVSLSTAAI 482
>gnl|CDD|224115 COG1194, MutY, A/G-specific DNA glycosylase [DNA replication,
recombination, and repair].
Length = 342
Score = 25.8 bits (57), Expect = 9.4
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 52 NIKVQIEDGNILRIIG---EGAKDKEEANTKETVWHVAER 88
N + DGN+ R++ + D + TK+ +W +AE+
Sbjct: 135 NQPEPVLDGNVKRVLSRLFAISGDIGKPKTKKELWELAEQ 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,558,487
Number of extensions: 684683
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 41
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)