RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032282
(144 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 128 bits (325), Expect = 2e-39
Identities = 59/143 (41%), Positives = 81/143 (56%), Gaps = 12/143 (8%)
Query: 4 DFFGYPFRRFFMSPPVFREWSGSTAL-----MDWLESPSAHIFKIDVPGYSRENIKVQIE 58
D + PF F P TA MDW E+P AH+FK D+PG +E +KV++E
Sbjct: 15 DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVE 74
Query: 59 DGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNG 118
DGN+L + GE K+KE+ K WH ER +G F R L E+ K++++KA ++NG
Sbjct: 75 DGNVLVVSGERTKEKED---KNDKWHRVERSSGK---FVRRFRLLEDAKVEEVKAGLENG 128
Query: 119 VLTVIVPKDANHKKSSVRNINIT 141
VLTV VPK KK V+ I I+
Sbjct: 129 VLTVTVPKAE-VKKPEVKAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 105 bits (265), Expect = 7e-31
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 30 MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERR 89
+D E + + D+PG I+VQ++ IL I GE + + + ERR
Sbjct: 7 VDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESST---ETERFSRIERR 62
Query: 90 AGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDA 128
G F R LP++ D I A NGVL + +PK
Sbjct: 63 ---YGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRP 98
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 98.1 bits (245), Expect = 1e-27
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 13/128 (10%)
Query: 8 YPFRRFFMSPPVFREWSGSTAL--MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRI 65
Y + +D E + D+ G+++E IK ++ N L I
Sbjct: 3 YLGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELII 62
Query: 66 IGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLD-QIKAHVDNGVLTVIV 124
E ++ E +R + I LP NV D +I +NGVLT+ +
Sbjct: 63 EAE--REITEPGV-----KYLTQR---PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRI 112
Query: 125 PKDANHKK 132
P
Sbjct: 113 PIAGTSVF 120
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 99.4 bits (248), Expect = 1e-27
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 9/138 (6%)
Query: 3 GDFFGYPFRRFFMSPPVFREWSGSTALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNI 62
+ + +E +PG ++E+I + +
Sbjct: 32 STPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DT 90
Query: 63 LRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTV 122
L I + T+ +E R I+LP VK + A +NGVL+V
Sbjct: 91 LEIRAK---RSPLMITESERIIYSEIPEEEE--IYRTIKLPATVKEENASAKFENGVLSV 145
Query: 123 IVPKDANHKKSSVRNINI 140
I+PK + K + INI
Sbjct: 146 ILPKAESSIK---KGINI 160
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 65.4 bits (159), Expect = 2e-14
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 19/136 (13%)
Query: 9 PFRRFFMSPPVFREWSG--STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRII 66
F++ PP F T L + +DV +S E +KV++ +++ +
Sbjct: 43 SLSPFYLRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVH 101
Query: 67 GEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHV-DNGVLTVIVP 125
G+ EE ++ R F R+ +P +V I + + +GVLTV P
Sbjct: 102 GK----HEE---RQDEHGFISRE------FHRKYRIPADVDPLTITSSLSSDGVLTVNGP 148
Query: 126 KDANHKKSSVRNINIT 141
+ R I IT
Sbjct: 149 RKQVSGPE--RTIPIT 162
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 59.3 bits (144), Expect = 6e-13
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 34 ESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGR 93
+ +DV ++ + + V+ +D ++ I G+ +
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKD-GVVEITGK----HAARQDEHGYIS--------- 49
Query: 94 GDFSREIELPENVKLDQIKAHV-DNGVLTVIVPK 126
F+R+ LP V Q+ + + G LTV P
Sbjct: 50 RCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 61.8 bits (149), Expect = 2e-12
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 11/123 (8%)
Query: 4 DFFGYPFRRFFMSPPVFREWSGSTALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNIL 63
+ G + S H+ P ++ +++KV + +
Sbjct: 201 KGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY 260
Query: 64 RIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVI 123
+ G K+++ N + +F + PE V + +A + +G++ V
Sbjct: 261 -VHGVTGKEEKTENASHSE----------HREFYKAFVTPEVVDASKTQAEIVDGLMVVE 309
Query: 124 VPK 126
P
Sbjct: 310 APL 312
Score = 49.1 bits (116), Expect = 7e-08
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 27/138 (19%)
Query: 4 DFFGYPFRRFF-MSPPVFREWSGSTALMDWLESPSAHI----------FKIDVPGYSREN 52
+ F + + P F T + A+ +V + E
Sbjct: 68 NAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEE 127
Query: 53 IKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIK 112
I ++ + N L + + + +A E+ R I LP +V + I+
Sbjct: 128 ITIKADK-NKLVVRAQKSVACGDAAMSES--------------VGRSIPLPPSVDRNHIQ 172
Query: 113 AHV-DNGVLTVIVPKDAN 129
A + + VL + P +
Sbjct: 173 ATITTDDVLVIEAPVNEP 190
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 57.5 bits (139), Expect = 5e-12
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 34 ESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGR 93
P +DV +S E I V++ + + + + +E
Sbjct: 8 TDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHARHEERPDEHGFIAR------------ 54
Query: 94 GDFSREIELPENVKLDQIKAHV-DNGVLTVIVPKDANHKK 132
+F R LP V + + + GVL++ +
Sbjct: 55 -EFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQAS 93
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 57.6 bits (139), Expect = 6e-12
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 34 ESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGR 93
+ +DV +S E++ V++++ + I G K + +
Sbjct: 9 SDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHG-----KHNERQDDHGYI--------S 54
Query: 94 GDFSREIELPENVKLDQIKAHV-DNGVLTVIVPKD--ANHKKSSVRNINIT 141
+F R LP NV + + +G+LT PK S R I ++
Sbjct: 55 REFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 56.7 bits (137), Expect = 8e-12
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 41 FKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREI 100
+DV +S E +KV++ +++ + G+ EE ++ R F R+
Sbjct: 10 VNLDVKHFSPEELKVKVLG-DVIEVHGK----HEE---RQDEHGFISRE------FHRKY 55
Query: 101 ELPENVKLDQIKAHV-DNGVLTVIVPKDANHKK 132
+P +V I + + +GVLTV P+
Sbjct: 56 RIPADVDPLTITSSMSSDGVLTVNGPRKQVSGP 88
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics,
joint center F structural genomics, JCSG; HET: PG4;
2.07A {Bacteroides fragilis nctc 9343}
Length = 221
Score = 29.5 bits (66), Expect = 0.30
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 99 EIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINITSK 143
+I P+N+ + I+ V + L + + K + I ITS
Sbjct: 45 QIYGPDNI-VALIQVAVKDNTLFLSIDKSKKVRNFKKMKITITSP 88
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 27.2 bits (61), Expect = 1.8
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 43 IDVPGYSRENIKVQIEDGNILRIIGEGAK-DKEEAN 77
+ +R++I + + +GN I+ G EE +
Sbjct: 83 TSIKEETRDSIAI-LHEGNQTEILEAGPTVSPEEIS 117
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase,
gamma-glutamylamine cyclotransferase,
gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} PDB:
3jub_A 3juc_A
Length = 153
Score = 26.6 bits (58), Expect = 2.5
Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 5/80 (6%)
Query: 2 AGDFFGYPFRRFFMSPPVFREWSGSTALMDWLESPSAHIFKID----VPG-YSRENIKVQ 56
+ + + SG + + +D P Y R ++VQ
Sbjct: 37 LEPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVDERMLRFLDDFQSCPALYQRTVLRVQ 96
Query: 57 IEDGNILRIIGEGAKDKEEA 76
+ + A +
Sbjct: 97 LLEDRAPGAEEPPAPTAVQC 116
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 26.8 bits (60), Expect = 2.8
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 43 IDVPGYSRENIKVQIEDGNILRIIGEGAK 71
++ G +R I + + +G I+ +G +
Sbjct: 101 YNIKGETRNCIAI-LHEGQQTEILEQGPE 128
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 26.4 bits (59), Expect = 3.3
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 60 GNILRIIGEGAKDKEEANTKETVWH-VAERRAGGRGDFSREIELPENVKLDQIKAHVDNG 118
G+I+ I + A T+ +H +A GD L + + + + G
Sbjct: 223 GHIICIQDRIPAPIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQ--GEALLTLIAQG 280
Query: 119 VLTVIVPK 126
+ + P
Sbjct: 281 KMEIAAPD 288
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly,
membrane coat, nucleocytoplasmic transport,
beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB:
3h7n_A 3hxr_A
Length = 729
Score = 26.7 bits (58), Expect = 3.9
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 5/95 (5%)
Query: 8 YPFRRFFMSPPVFREWSGSTALMDWLESPSAHIFKIDVPGY----SRENIKVQIEDGNIL 63
F + + + +W + + F + VP + S + V +EDG +L
Sbjct: 126 GSFLTLQLPLSFLFSSANTLN-GEWFHLQNPYDFTVRVPHFLFYVSPQFSVVFLEDGGLL 184
Query: 64 RIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSR 98
+ E + + R R S
Sbjct: 185 GLKKVDGVHYEPLLFNDNSYLKCLTRFFSRSSKSD 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 4.3
Identities = 5/16 (31%), Positives = 13/16 (81%)
Query: 100 IELPENVKLDQIKAHV 115
IEL +++ L++++ H+
Sbjct: 1880 IELQKSLSLEEVEGHL 1895
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 26.1 bits (57), Expect = 5.7
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 47 GYSRENIKVQIEDGNILRI--IGEGAKDKEEANTKETVW 83
GY E +V EDG IL I I G K+ E + +
Sbjct: 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAF 62
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 25.6 bits (57), Expect = 7.9
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 43 IDVPGYSRENIKVQIE-DGNILRIIGEGAKDKEEA 76
++ ++R+N+ V +E G R + GA E+
Sbjct: 83 VEAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDE 117
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding,
lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB:
2ist_A 1qyu_A 1prz_A
Length = 325
Score = 25.2 bits (56), Expect = 8.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 45 VPGYSRENIKVQIEDGNIL 63
P YSR IK I D +L
Sbjct: 27 FPDYSRSRIKEWILDQRVL 45
>2xsg_A Ccman5; hydrolase, mannosidase; HET: B3P; 2.00A {Cellulosimicrobium
cellulans}
Length = 774
Score = 25.5 bits (56), Expect = 8.8
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 8/44 (18%)
Query: 13 FFMSPPVFREWSGSTALMDWLESPSAHIFKIDVPGYSRENIKVQ 56
F + P F + + F + G S + VQ
Sbjct: 687 FQVGSPFFDSTT--------ITYDDGSAFTVTADGVSEDAFYVQ 722
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 25.3 bits (56), Expect = 9.1
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 28 ALMDWLESPSAHI---FKIDVPGYSRENIKVQIE-DGNILRIIGEGAK-DKEEAN 77
L++ L S I F + V G +RENI++ E + I I G + N
Sbjct: 81 ILVEELRKISKLITTNF-VYVEGETRENIEIIDEKNKTITAINFPGPDVTDMDVN 134
>3ljy_A Putative adhesin; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
lipoprotein; HET: PGE; 2.41A {Parabacteroides
distasonis}
Length = 243
Score = 25.0 bits (54), Expect = 9.4
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 92 GRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINITSK 143
+ E+ + +N+ + V + VLT+ + + SK
Sbjct: 38 SDDPSTVEVTVDQNL-HPYVNIEVKDRVLTIAFKGAKVDHFTKFI-VKTNSK 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,310,553
Number of extensions: 134953
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 42
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)