BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032284
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FV54|DEF1B_SOLLC Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum
GN=PDF1B PE=2 SV=1
Length = 279
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 104/128 (81%), Positives = 120/128 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+MYKTDGIGLSAPQVG+NVQLMVFN GERGEGEEIVLVNPRV++YS ++IPYEEGC
Sbjct: 118 MFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGC 177
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP IH DV+RPESVK+DA+DING RF +SLS LPARVFQHEFDHLQG+LFF++MTD+V
Sbjct: 178 LSFPMIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEV 237
Query: 121 LDSIREQL 128
LD+IRE+L
Sbjct: 238 LDTIREKL 245
>sp|Q9FUZ2|DEF1B_ARATH Peptide deformylase 1B, chloroplastic OS=Arabidopsis thaliana
GN=PDF1B PE=1 SV=2
Length = 273
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 102/129 (79%), Positives = 121/129 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 231
Query: 121 LDSIREQLE 129
LDSIRE+LE
Sbjct: 232 LDSIREELE 240
>sp|Q5VNN5|DEF1B_ORYSJ Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp.
japonica GN=PDF1B PE=2 SV=1
Length = 269
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 113/129 (87%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEEGC
Sbjct: 109 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGC 168
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQGILFF+RM+ DV
Sbjct: 169 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDV 228
Query: 121 LDSIREQLE 129
L+S+RE L+
Sbjct: 229 LESVREGLK 237
>sp|B1XJP0|DEF_SYNP2 Peptide deformylase OS=Synechococcus sp. (strain ATCC 27264 / PCC
7002 / PR-6) GN=def PE=3 SV=1
Length = 187
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVG+N +L+V + E +VL+NP + K+ ++ P+EEGC
Sbjct: 48 MLQTMYSSQGIGLAAPQVGVNKRLIVIDTDPENPANAPLVLINPEIKKFGQQLCPFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG+H DV RP+ +++ RD G + S L +RV QHE DHL G++F +R+ +++
Sbjct: 108 LSIPGVHLDVIRPDEIEVSYRDEQGKPKRIKASGLLSRVIQHEIDHLDGVMFVDRVENEI 167
Query: 121 LDSIREQLEKRNMRIR 136
++ QL++R ++
Sbjct: 168 --ALSSQLKQRGFALK 181
>sp|Q8YSK6|DEF1_NOSS1 Peptide deformylase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=def1 PE=3 SV=1
Length = 187
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 84/130 (64%), Gaps = 2/130 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGIN QL+V + + ++L+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNPANPPLILINPTIKQVSREICSAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RPE V++ +D NG ++ +DL R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLLGRCIQHEMDHLNGVVFVDRVDNSL 167
Query: 121 LDSIREQLEK 130
++ ++L K
Sbjct: 168 --TLAQELSK 175
>sp|Q7NIF5|DEF2_GLOVI Peptide deformylase 2 OS=Gloeobacter violaceus (strain PCC 7421)
GN=def2 PE=3 SV=1
Length = 187
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 2/136 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N +++V + E +VL+NP + ++S+ + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKRMIVVDIDPENAARPPLVLINPLIKQFSSDLAVDQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ADV RPE V RD+NG ++ + L AR QHE DHL G+LF +R+ + +
Sbjct: 108 LSVPSIYADVRRPERVVATYRDLNGRPVTLEATGLLARCIQHEIDHLDGVLFVDRVENQI 167
Query: 121 LDSIREQLEKRNMRIR 136
++ QL ++ +R
Sbjct: 168 --ALAPQLVEKGFAVR 181
>sp|Q31DB4|DEF_PROM9 Peptide deformylase OS=Prochlorococcus marinus (strain MIT 9312)
GN=def PE=3 SV=1
Length = 201
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + Y + YEEGC
Sbjct: 62 MIQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDYGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP ++K+ RD G + L AR QHE DHL GILF +R+T
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHLNGILFVDRVTSK- 180
Query: 121 LDSIREQLEK 130
D ++++L K
Sbjct: 181 -DDLKKELIK 189
>sp|Q7UHZ5|DEF_RHOBA Peptide deformylase OS=Rhodopirellula baltica (strain SH1) GN=def
PE=3 SV=1
Length = 201
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D+MY+ DG+GL+A QV + +++ V NP G+R EGE V++NP +++ +EGC
Sbjct: 34 MLDLMYEFDGVGLAANQVDLPIRMFVANPTGKRDEGESWVILNPEIDRPKGNDTA-QEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ V+RP++V++ D+ G + L ARV QHE DHL GI+FF+R+ ++
Sbjct: 93 LSVPGLYGQVKRPKTVRLRGFDLQGNEINQVLDGFMARVVQHEVDHLDGIMFFDRIGEEG 152
Query: 121 LDSIREQLEK 130
L + LE+
Sbjct: 153 LRDLEGHLEE 162
>sp|P94601|DEF_FREDI Peptide deformylase OS=Fremyella diplosiphon GN=def PE=3 SV=1
Length = 187
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 83/130 (63%), Gaps = 2/130 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPDNPANPPLVLINPTIKQVSKEICVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV+RPE V+I +D NG ++ +DL AR QHE DHL G++F +R+ + +
Sbjct: 108 LSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATDLLARCIQHEMDHLNGVVFVDRVDNSL 167
Query: 121 LDSIREQLEK 130
++ ++L K
Sbjct: 168 --TLAQELSK 175
>sp|A2BNK7|DEF_PROMS Peptide deformylase OS=Prochlorococcus marinus (strain AS9601)
GN=def PE=3 SV=1
Length = 201
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 71/117 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + + + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDFGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ +V RP ++K+ RD G + L AR QHE DHL GILF +R+T
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHLNGILFVDRVT 178
>sp|Q3AHC4|DEF_SYNSC Peptide deformylase OS=Synechococcus sp. (strain CC9605) GN=def
PE=3 SV=1
Length = 201
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP ++++ RD G + L AR QHE DHL G+LF +R+TD
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVDRVTDQ- 180
Query: 121 LDSIREQLEKRN 132
D ++++L+++
Sbjct: 181 -DGLQKELKEKG 191
>sp|Q7U9D4|DEF_SYNPX Peptide deformylase OS=Synechococcus sp. (strain WH8102) GN=def
PE=3 SV=1
Length = 201
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 73/120 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP ++ S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEISAASASIDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP ++++ RD G + L AR QHE DHL G+LF +R+TD+
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVDRVTDEA 181
>sp|A2BU25|DEF_PROM5 Peptide deformylase OS=Prochlorococcus marinus (strain MIT 9515)
GN=def PE=3 SV=1
Length = 203
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 2/136 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ +L+V + E E ++L+NP + + N + YEEGC
Sbjct: 62 MLKSMYSAKGIGLAAPQVGISKELLVIDINFEDSAAEPLILINPEITAFGNTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP ++K+ D G ++ L AR QHE DHL+G+LF +R+T
Sbjct: 122 LSIPGVYLNVVRPSTIKLRFSDEMGRPRKMNADGLLARCIQHEVDHLRGVLFVDRVTSK- 180
Query: 121 LDSIREQLEKRNMRIR 136
+ ++ +L+K +++
Sbjct: 181 -EDLKTELKKEGFQMK 195
>sp|Q7V3K7|DEF_PROMP Peptide deformylase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=def PE=3 SV=1
Length = 201
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GI +L+V + E E ++L+NP + Y + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGIKKELLVIDVNFEDAAAEPLILINPEITDYGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ +V RP ++K+ RD G + L AR QHE DHL G+LF +R+T
Sbjct: 122 LSIPGVYLNVVRPSTIKLRFRDEMGRPRKMKADGLLARCIQHEMDHLNGVLFVDRVT 178
>sp|Q0I7A5|DEF_SYNS3 Peptide deformylase OS=Synechococcus sp. (strain CC9311) GN=def
PE=3 SV=1
Length = 202
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTASGIGLAAPQVGVHQQLLVIDLDFETPSTPPLVLINPEITTCSASVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+G+LF +R+TD
Sbjct: 122 LSIPGVYLDVVRPTAIQLSFRDEMGRPRTMKADGLMARCIQHEMDHLRGVLFVDRVTD 179
>sp|Q7VED2|DEF_PROMA Peptide deformylase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=def PE=3 SV=1
Length = 203
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 72/119 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+G QL+V + E I+L+NP + ++S + YEEGC
Sbjct: 62 MLHSMYAAKGIGLAAPQIGSQQQLLVIDLDIENSATPPIILINPEITEFSATIDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ DV RP S+K++ RD G ++ L AR QHE DHL G+LF +R ++
Sbjct: 122 LSIPGVYLDVIRPSSIKVNFRDEMGRPKKINADGLLARCIQHEMDHLNGVLFVDRAINE 180
>sp|P73441|DEF_SYNY3 Peptide deformylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=def PE=3 SV=1
Length = 187
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 84/130 (64%), Gaps = 2/130 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQVGIN QL+V + ++ + ++++NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVGINKQLLVVDCEQDKPDEPPLIMINPQITRTSEELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV RP ++++ +D +G ++L ARV QHE DHL G++F +R+ + +
Sbjct: 108 LSVPNVYMDVTRPRAIEVTYKDEHGRPQKRLFAELTARVIQHEMDHLNGVMFVDRVDNPL 167
Query: 121 LDSIREQLEK 130
++ E L+K
Sbjct: 168 --ALAESLKK 175
>sp|Q46HV9|DEF_PROMT Peptide deformylase OS=Prochlorococcus marinus (strain NATL2A)
GN=def PE=3 SV=1
Length = 202
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGI +L+V + E +V +NP + S + YEEGC
Sbjct: 62 MLITMYSSKGIGLAAPQVGIQKRLLVIDLKFEDPNSPPMVFINPEIISSSATLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP S+K+ RD G ++ L AR QHE DHL G+ F +++TD+
Sbjct: 122 LSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHLNGVCFVDKVTDE- 180
Query: 121 LDSIREQLEKRNMR 134
+ +++QL + N +
Sbjct: 181 -EELKKQLNENNFK 193
>sp|Q8DIB4|DEF_THEEB Peptide deformylase OS=Thermosynechococcus elongatus (strain BP-1)
GN=def PE=3 SV=1
Length = 188
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 2/130 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + + E E +V++NP + +S ++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMINPVIKDFSEELEVCQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP V++ +D G + L AR QHE DHL G++F +R+ +
Sbjct: 108 LSIPGVYLEVRRPAMVEVSYKDEWGRPQVIMAGGLLARAIQHEIDHLTGVMFVDRVENQA 167
Query: 121 LDSIREQLEK 130
L +R +L++
Sbjct: 168 L--LRHELKE 175
>sp|Q3AZU8|DEF_SYNS9 Peptide deformylase OS=Synechococcus sp. (strain CC9902) GN=def
PE=3 SV=1
Length = 201
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 69/118 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQV + QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP ++++ RD G + L AR QHE DHL G+LF +R+TD
Sbjct: 122 LSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVDRVTD 179
>sp|Q0VTE1|DEF_ALCBS Peptide deformylase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=def PE=3 SV=1
Length = 168
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV +++QL+V + + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAATQVDVHIQLIVMD--LSEDHNKPMVFINPQITPLTEEQAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + V RP V+I+A D +G F V +L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEKVTRPARVRINALDRDGNAFEVEADELLATCIQHEMDHLDGKLFVDYVSRLK 152
Query: 121 LDSIREQLEK 130
D I+++LEK
Sbjct: 153 RDRIKKKLEK 162
>sp|A2BZN6|DEF_PROM1 Peptide deformylase OS=Prochlorococcus marinus (strain NATL1A)
GN=def PE=3 SV=1
Length = 202
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGI +L+V + E +V +NP + S + YEEGC
Sbjct: 62 MLITMYSSKGIGLAAPQVGIQKRLLVIDLNFEDPNSPPMVFINPEIISSSATVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP S+K+ RD G ++ L AR QHE DHL G+ F +++TD+
Sbjct: 122 LSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHLNGVCFVDKVTDE- 180
Query: 121 LDSIREQLEKRNMR 134
+ +++QL + N +
Sbjct: 181 -EELKKQLNENNFK 193
>sp|O66847|DEF_AQUAE Peptide deformylase OS=Aquifex aeolicus (strain VF5) GN=def PE=3
SV=1
Length = 169
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD MY+ +G+GL+A Q+G+ + +MV + E ++VL+NP + + K I Y+EG
Sbjct: 34 MFDTMYEAEGVGLAANQIGVPLSVMVIDTSPKEDAPPLKLVLINPEIKEGEGK-IKYKEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLSFPG+ +VER + VK++A + +G ++L PA VFQHE DHL+GI F +R+
Sbjct: 93 CLSFPGLSVEVERFQKVKVNALNEHGEPVELTLEGFPAIVFQHELDHLKGITFVDRL 149
>sp|Q7V5F9|DEF2_PROMM Peptide deformylase 2 OS=Prochlorococcus marinus (strain MIT 9313)
GN=def2 PE=3 SV=1
Length = 201
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYAAKGIGLAAPQVGIHKQLLVLDLDLETPTTPPVVLINPEIISSSATVETYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ +V RP + + RD G + L AR QHE DHL+G+LF +R+TD+
Sbjct: 122 LSIPGVYLNVVRPSEIVLSFRDEMGRPRKMKADGLMARCIQHEMDHLEGVLFVDRVTDE 180
>sp|Q88RR1|DEF1_PSEPK Peptide deformylase 1 OS=Pseudomonas putida (strain KT2440) GN=def1
PE=3 SV=1
Length = 168
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQVVVMDLSEDRSEPR--VFINPSVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLK 152
Query: 121 LDSIREQLEKRN 132
D I+++LEK++
Sbjct: 153 RDRIKKKLEKQH 164
>sp|B0VNL8|DEF_ACIBS Peptide deformylase OS=Acinetobacter baumannii (strain SDF) GN=def
PE=3 SV=1
Length = 176
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLEK 130
+RE++EK
Sbjct: 153 RQRVREKVEK 162
>sp|B3QPU5|DEF_CHLP8 Peptide deformylase OS=Chlorobaculum parvum (strain NCIB 8327)
GN=def PE=3 SV=1
Length = 187
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 79/135 (58%), Gaps = 10/135 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MFD MYK GIGL+APQVG +++L+V + + E + + +V++NPR+ + + EE
Sbjct: 34 MFDSMYKAPGIGLAAPQVGHSLRLLVVDISTIKEYADYKPMVVINPRIVSVAGRNA-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM-- 116
GCLS PG+ DV RP + + RD + SD+ ARV QHE DHL G LF +RM
Sbjct: 93 GCLSVPGVAGDVVRPSKITLHYRDEKFEEHTEEFSDMMARVLQHEIDHLDGTLFVDRMEK 152
Query: 117 -----TDDVLDSIRE 126
LD+I++
Sbjct: 153 RDRRKVQKTLDAIKQ 167
>sp|O51092|DEF_BORBU Peptide deformylase OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=def PE=3 SV=2
Length = 165
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S + Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYEFSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL G+LF D
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHLNGVLF----IDYY 144
Query: 121 LDSIREQLEKRNMRIR 136
+ ++ +L K MR R
Sbjct: 145 EEKLKNKLLKPYMRER 160
>sp|Q823U4|DEF_CHLCV Peptide deformylase OS=Chlamydophila caviae (strain GPIC) GN=def
PE=3 SV=1
Length = 186
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG ++ L V GE EG+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESLSLFVMCVEGETEEGDLIFCDFPKVYINPVLSNPSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ ADV RP+S+ + A +++G F+ L PAR+ HE DHL G+L+ +
Sbjct: 94 IGREGCLSIPGLRADVYRPQSITVTAVNLDGQEFTEHLEGFPARIIMHENDHLHGVLYID 153
Query: 115 RMTDDV-LDSIREQLEKRNMRIRLDFKALKR 144
+M + + + LEK R K R
Sbjct: 154 KMEEPKDIKKFKASLEKIRRRYHAHVKPEDR 184
>sp|C1DFV8|DEF_AZOVD Peptide deformylase OS=Azotobacter vinelandii (strain DJ / ATCC
BAA-1303) GN=def PE=3 SV=1
Length = 168
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +L+V + ++ E V +NP + ++ PY+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNVHKRLVVMDLSEDKNEPR--VFINPEFEALTEELEPYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIRALDRDGQPFELVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLEKRN 132
D IR++LEK++
Sbjct: 153 RDRIRKKLEKQH 164
>sp|Q5L6G8|DEF_CHLAB Peptide deformylase OS=Chlamydophila abortus (strain S26/3) GN=def
PE=3 SV=1
Length = 184
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVSLFVMCVEGETEDGDLIFCDFPKVYINPVLSNVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL GIL+ +
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIVMHENDHLNGILYID 153
Query: 115 RMTD 118
+M +
Sbjct: 154 KMEE 157
>sp|A5GQU9|DEF_SYNR3 Peptide deformylase OS=Synechococcus sp. (strain RCC307) GN=def
PE=3 SV=1
Length = 201
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYAAHGIGLAAPQVGVHQQLLVIDLDPEEAANPPLVLINPEIVATSGALDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP V + RD G L AR HE DHL G+LF +R++D++
Sbjct: 122 LSIPGVYLNVVRPSQVDVKYRDELGRPQRRKADGLMARCILHEMDHLNGVLFVDRVSDEL 181
>sp|Q253S4|DEF_CHLFF Peptide deformylase OS=Chlamydophila felis (strain Fe/C-56) GN=def
PE=3 SV=1
Length = 186
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG ++ L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESLSLFVVCVEGETEDGDLIFCDFPKVYINPVLSNASEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ ADV RP+S+ + A +++G F+ L PAR+ HE DHL G+L+ +
Sbjct: 94 IGREGCLSIPGLRADVYRPQSITVTALNLDGQEFTEHLEGFPARIIMHENDHLHGVLYID 153
Query: 115 RMTD 118
+M +
Sbjct: 154 KMEE 157
>sp|Q88B43|DEF1_PSESM Peptide deformylase 1 OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=def1 PE=3 SV=1
Length = 168
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 84/132 (63%), Gaps = 2/132 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSA--PMVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLEKRN 132
D I+++LEK++
Sbjct: 153 RDRIKKKLEKQH 164
>sp|O84357|DEF_CHLTR Peptide deformylase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=def PE=3 SV=1
Length = 181
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 34 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL G+L+ +
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVLYID 153
Query: 115 RMTD-DVLDSIREQLEK 130
RM+D D + LEK
Sbjct: 154 RMSDKDKTKQFKNNLEK 170
>sp|B0BBY7|DEF_CHLTB Peptide deformylase OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=def PE=3 SV=1
Length = 181
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 34 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL G+L+ +
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVLYID 153
Query: 115 RMTD-DVLDSIREQLEK 130
RM+D D + LEK
Sbjct: 154 RMSDKDKTKQFKNNLEK 170
>sp|Q3KM05|DEF_CHLTA Peptide deformylase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=def PE=3 SV=1
Length = 181
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 34 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL G+L+ +
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVLYID 153
Query: 115 RMTD-DVLDSIREQLEK 130
RM+D D + LEK
Sbjct: 154 RMSDKDKTKQFKNNLEK 170
>sp|B0B7S2|DEF_CHLT2 Peptide deformylase OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=def PE=3 SV=1
Length = 181
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 34 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL G+L+ +
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVLYID 153
Query: 115 RMTD-DVLDSIREQLEK 130
RM+D D + LEK
Sbjct: 154 RMSDKDKTKQFKNNLEK 170
>sp|Q9PK41|DEF_CHLMU Peptide deformylase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=def PE=3 SV=1
Length = 181
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG +V L + E +GE I V +NP + + S +++
Sbjct: 34 MSETMTFYKGVGLAAPQVGHSVALFIMGVEKELDDGELIFCDFPKVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ + + A++++G FS++L AR+ HE DHL G+L+ +
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVTAKNLDGQPFSMTLEGFLARIVMHETDHLHGVLYID 153
Query: 115 RMTD-DVLDSIREQLEK 130
RM+D D + LEK
Sbjct: 154 RMSDKDKTKQFKNNLEK 170
>sp|Q7NQ75|DEF_CHRVO Peptide deformylase OS=Chromobacterium violaceum (strain ATCC 12472
/ DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC
9757) GN=def PE=3 SV=1
Length = 167
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV + +L+V + ER E V +NP + + + + YEEGC
Sbjct: 35 MFETMYEAKGIGLAATQVDYHRRLVVMDISEERDERR--VFINPEIVEKDGETV-YEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK+ A+D +G F + L A QHE DHL G++F ER++
Sbjct: 92 LSVPGIYDKVTRAERVKVKAQDRDGKPFELEADGLLAICIQHELDHLNGVVFVERLSQMK 151
Query: 121 LDSIREQLEKR 131
I+ +L+KR
Sbjct: 152 QQRIKTKLKKR 162
>sp|Q92SH6|DEF_RHIME Peptide deformylase OS=Rhizobium meliloti (strain 1021) GN=def PE=3
SV=2
Length = 174
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP+V + S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPKRLLVLDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A+VERP ++ ++ D G +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAITVEYVDREGKEQAVEAEGLLATCLQHEIDHLNGVLFIDYISK-- 152
Query: 121 LDSIREQLEKRNMRIRLDFKALK 143
KR+M IR KA K
Sbjct: 153 --------LKRDMVIRRFTKAAK 167
>sp|P63914|DEF_BRUSU Peptide deformylase OS=Brucella suis biovar 1 (strain 1330) GN=def
PE=3 SV=1
Length = 175
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 76/130 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A+VERP +VK++ D +G S+ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHISKLK 154
Query: 121 LDSIREQLEK 130
D + ++ +K
Sbjct: 155 RDMVIKKFKK 164
>sp|P63913|DEF_BRUME Peptide deformylase OS=Brucella melitensis biotype 1 (strain 16M /
ATCC 23456 / NCTC 10094) GN=def PE=3 SV=1
Length = 175
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 76/130 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A+VERP +VK++ D +G S+ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHISKLK 154
Query: 121 LDSIREQLEK 130
D + ++ +K
Sbjct: 155 RDMVIKKFKK 164
>sp|Q8KCG7|DEF_CHLTE Peptide deformylase OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=def PE=3 SV=1
Length = 187
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MFD MYK GIGL+APQVG +++L+V + + E + + +V++NPR+ + + EE
Sbjct: 34 MFDTMYKAPGIGLAAPQVGHSLRLVVVDISTIKEYADFKPMVVINPRIVAVRGRSL-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS PGI +V RP ++ + RD + + ARV QHE DHL G LF +RM
Sbjct: 93 GCLSVPGIAGNVVRPSAITLHYRDEKFEEHTADFHSMMARVLQHEIDHLDGTLFVDRMDK 152
Query: 119 DVLDSIREQLEK-RNMRIRLDF 139
I+++L+ R++ D+
Sbjct: 153 RDRRKIQKELDAIAEGRVKADY 174
>sp|A4XNB3|DEF_PSEMY Peptide deformylase OS=Pseudomonas mendocina (strain ymp) GN=def
PE=3 SV=1
Length = 168
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G F + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPFELIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLEKRN 132
D I+++LEK++
Sbjct: 153 RDRIKKKLEKQH 164
>sp|Q5QXI5|DEF_IDILO Peptide deformylase OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=def PE=3 SV=1
Length = 174
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 3/130 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ G+GL+A QV ++ +L V + + E +V +NP + + + +EGC
Sbjct: 35 MFETMYEEQGVGLAATQVDVHRRLFVSD--CSEDQNEPLVFINPEITE-AEGHFKNDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPG++A VER E + + A D NG RFS S L A QHE DHL G LF + ++
Sbjct: 92 LSFPGVYAKVERAERITVTALDKNGERFSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLK 151
Query: 121 LDSIREQLEK 130
+ IR++LEK
Sbjct: 152 RERIRKKLEK 161
>sp|C5BKQ0|DEF_TERTT Peptide deformylase OS=Teredinibacter turnerae (strain ATCC 39867 /
T7901) GN=def PE=3 SV=1
Length = 168
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + + E E +V +NPR++ + YEEGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHEQIIVID-ISE-NHDEPLVFINPRIDVLDETLFDYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V RP V++ A + +G F + L A QHE DHL+G LF + +++
Sbjct: 93 LSVPGFYEEVTRPRHVRVTALNRDGEEFVLEPEGLLAVCIQHEIDHLKGKLFVDYVSNIK 152
Query: 121 LDSIREQLEKRN 132
IR++LEK++
Sbjct: 153 RQRIRKKLEKQH 164
>sp|A1KRE5|DEF_NEIMF Peptide deformylase OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=def PE=3
SV=1
Length = 167
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLK 151
Query: 121 LDSIREQLEKRN 132
I+ +L+KR
Sbjct: 152 QGRIKTKLKKRQ 163
>sp|P63916|DEF_NEIMB Peptide deformylase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=def PE=3 SV=1
Length = 167
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLK 151
Query: 121 LDSIREQLEKRN 132
I+ +L+KR
Sbjct: 152 QGRIKTKLKKRQ 163
>sp|P63915|DEF_NEIMA Peptide deformylase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=def PE=3 SV=1
Length = 167
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLK 151
Query: 121 LDSIREQLEKRN 132
I+ +L+KR
Sbjct: 152 QGRIKTKLKKRQ 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,843,945
Number of Sequences: 539616
Number of extensions: 2262956
Number of successful extensions: 6146
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5211
Number of HSP's gapped (non-prelim): 500
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)