Query 032284
Match_columns 144
No_of_seqs 106 out of 1107
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 12:03:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0242 Def N-formylmethionyl- 100.0 1.2E-54 2.7E-59 335.9 9.8 132 1-132 35-167 (168)
2 PRK12846 peptide deformylase; 100.0 8.8E-53 1.9E-57 324.8 12.6 129 1-131 36-164 (165)
3 PRK14597 peptide deformylase; 100.0 1.2E-52 2.6E-57 324.5 11.9 127 1-132 32-158 (166)
4 PRK00150 def peptide deformyla 100.0 6E-52 1.3E-56 320.1 12.8 129 1-131 35-164 (165)
5 PRK14598 peptide deformylase; 100.0 5.1E-52 1.1E-56 326.3 12.2 130 1-131 34-165 (187)
6 TIGR00079 pept_deformyl peptid 100.0 6.8E-52 1.5E-56 318.9 12.3 127 1-128 33-159 (161)
7 PRK14596 peptide deformylase; 100.0 7.8E-52 1.7E-56 327.9 12.0 141 1-142 34-188 (199)
8 PRK14595 peptide deformylase; 100.0 2.1E-51 4.6E-56 316.5 11.1 118 1-122 35-152 (162)
9 PF01327 Pep_deformylase: Poly 100.0 2.4E-51 5.3E-56 313.6 9.6 121 1-121 34-156 (156)
10 cd00487 Pep_deformylase Polype 100.0 2.1E-49 4.6E-54 298.8 10.9 112 1-112 30-141 (141)
11 PRK09218 peptide deformylase; 100.0 2.3E-46 4.9E-51 281.4 9.8 105 1-112 30-136 (136)
12 KOG3137 Peptide deformylase [T 100.0 3.9E-42 8.4E-47 274.3 8.6 131 1-131 113-257 (267)
13 COG4740 Predicted metalloprote 98.3 7.8E-07 1.7E-11 68.1 3.9 71 37-109 74-159 (176)
14 smart00666 PB1 PB1 domain. Pho 46.4 21 0.00047 23.2 2.5 30 74-103 39-68 (81)
15 cd03074 PDI_b'_Calsequestrin_C 44.8 8.7 0.00019 28.4 0.4 24 2-31 69-92 (120)
16 PF13670 PepSY_2: Peptidase pr 43.0 25 0.00053 23.5 2.4 31 73-103 53-83 (83)
17 PF04986 Y2_Tnp: Putative tran 33.0 56 0.0012 25.2 3.3 44 59-104 117-163 (183)
18 PHA02858 EIF2a-like PKR inhibi 32.1 28 0.0006 24.5 1.3 54 58-128 8-62 (86)
19 PF11730 DUF3297: Protein of u 30.6 66 0.0014 21.7 2.9 38 51-95 29-66 (71)
20 cd06401 PB1_TFG The PB1 domain 30.5 69 0.0015 22.2 3.1 30 72-101 40-69 (81)
21 COG2916 Hns DNA-binding protei 27.8 28 0.00061 26.1 0.8 38 73-112 85-122 (128)
22 PF14657 Integrase_AP2: AP2-li 27.8 91 0.002 18.5 3.0 22 75-96 3-25 (46)
23 cd05992 PB1 The PB1 domain is 27.2 66 0.0014 20.7 2.5 29 74-102 39-67 (81)
24 COG2941 CAT5 Ubiquinone biosyn 26.4 28 0.00061 28.0 0.6 12 97-108 77-88 (204)
25 PF06486 DUF1093: Protein of u 26.2 83 0.0018 20.7 2.8 22 74-95 28-49 (78)
26 cd06402 PB1_p62 The PB1 domain 25.2 98 0.0021 21.5 3.1 28 74-101 46-73 (87)
27 cd06398 PB1_Joka2 The PB1 doma 24.9 99 0.0021 21.5 3.1 32 71-102 41-72 (91)
28 cd06396 PB1_NBR1 The PB1 domai 24.5 89 0.0019 21.5 2.8 22 75-96 39-60 (81)
29 KOG2848 1-acyl-sn-glycerol-3-p 23.2 95 0.0021 26.2 3.2 31 106-136 133-165 (276)
30 cd06407 PB1_NLP A PB1 domain i 22.6 96 0.0021 21.1 2.6 27 74-100 39-65 (82)
31 PF01078 Mg_chelatase: Magnesi 22.2 76 0.0016 25.5 2.3 24 107-130 106-132 (206)
32 PRK10328 DNA binding protein, 21.5 53 0.0011 24.7 1.2 33 73-105 92-124 (134)
33 smart00435 TOPEUc DNA Topoisom 21.3 2E+02 0.0043 25.5 4.9 73 56-128 140-215 (391)
34 TIGR01655 yxeA_fam conserved h 20.8 1.4E+02 0.003 21.4 3.3 21 74-94 55-75 (114)
35 PF15507 DUF4649: Domain of un 20.5 1.2E+02 0.0027 20.5 2.8 25 76-100 1-25 (72)
36 cd06411 PB1_p51 The PB1 domain 20.5 57 0.0012 22.4 1.1 23 119-141 21-43 (78)
37 cd06409 PB1_MUG70 The MUG70 pr 20.0 1.7E+02 0.0037 20.3 3.5 31 72-102 40-70 (86)
No 1
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-54 Score=335.93 Aligned_cols=132 Identities=37% Similarity=0.697 Sum_probs=123.4
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCC-CCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~-~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~ 79 (144)
|++|||+++||||||||||+++|+||++...+.. +..+.+||||+|++.|.+....+|||||+||+++.|+||.+|+|+
T Consensus 35 M~etm~~~~GVGLAApQIGi~kri~vi~~~~~~~~~~~~~vlINP~I~~~~~~~~~~~EGCLSvP~~~~~V~R~~~I~V~ 114 (168)
T COG0242 35 MLETMYAAEGVGLAAPQIGISKRIFVIDVEEDGRPKEPPLVLINPEIISKSEETLTGEEGCLSVPGVRGEVERPERITVK 114 (168)
T ss_pred HHHHHHhCCCeeeeehhcCceeeEEEEEccCccCcCcCceEEECCEEeecCCcccccCcceEeecCceeeeecccEEEEE
Confidence 8999999999999999999999999999976532 344689999999999888889999999999999999999999999
Q ss_pred EEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHhh
Q 032284 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKRN 132 (144)
Q Consensus 80 y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~~ 132 (144)
|+|.+|++++++++||.|||+|||+|||||+||+||+++.+++.+++++++..
T Consensus 115 ~~D~~G~~~~~~a~G~lA~~iQHEiDHLnGvlf~D~l~~~k~~~~~~~~~~~~ 167 (168)
T COG0242 115 YLDRNGKPQELEAEGLLARCIQHEIDHLNGVLFIDRLSPLKRDRLKKKLKKLK 167 (168)
T ss_pred EEcCCCCEEEEEEcCceeEEeEeeccccCcEEeeeecChhhhhhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999888753
No 2
>PRK12846 peptide deformylase; Reviewed
Probab=100.00 E-value=8.8e-53 Score=324.84 Aligned_cols=129 Identities=36% Similarity=0.660 Sum_probs=119.2
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++||++++|+||||||||+++|+||++.... ..++.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 36 M~~tm~~~~gvGLAApQVG~~~ri~vi~~~~~--~~~~~vliNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~ 113 (165)
T PRK12846 36 MFETMRAADGVGLAAPQIGVSLRVVVIDLGDD--RVPPTVLINPEITELSPEEEVGWEGCLSVPGLRGEVERPARVRVRA 113 (165)
T ss_pred HHHHHHhCCCcEEeccccCCceeEEEEEccCC--CCcceEEECCEEEcCCCCEeccCCCCCccCCcceeecCcceEEEEE
Confidence 78999999999999999999999999997542 1346899999999999888788999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
+|++|++++.+++||.|||||||+|||+|+||+||+++.++..+.+++++.
T Consensus 114 ~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~Drl~~~~~~~~~~~~~~~ 164 (165)
T PRK12846 114 QDRDGKPIEIEAEGFLARVLQHEIDHLDGILYTDRLSRLKRERALKKVEKY 164 (165)
T ss_pred ECCCCCEEEEEEeCHHHhHHhHHhHhcCCEeehhhCCHHHhHHHHHHhhcc
Confidence 999999999999999999999999999999999999998888888777653
No 3
>PRK14597 peptide deformylase; Provisional
Probab=100.00 E-value=1.2e-52 Score=324.53 Aligned_cols=127 Identities=40% Similarity=0.667 Sum_probs=118.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++||++++|+||||||||+++|+||++.. .++.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 32 M~~tm~~~~GvGLAApQIGv~~ri~vi~~~-----~~~~v~INP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~ 106 (166)
T PRK14597 32 MIETMYHYDGVGLAAPQVGISLRFFVMDDG-----SGPKVVINPEIIEKSEEKEIAEEGCLSFPEIFEDVERSKWVKVRY 106 (166)
T ss_pred HHHHHHhCCCcEEehhhcCCceeEEEEEcC-----CCceEEECCeeccCCCCcccCCCCCCccCCCceEecCCCEEEEEE
Confidence 789999999999999999999999999963 236799999999999988778999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHhh
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKRN 132 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~~ 132 (144)
+|++|++++.+++||.|||+|||+|||+|+||+||+++..+..+.+++++++
T Consensus 107 ~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~lfiDrl~~~~~~~~~~~~~~~~ 158 (166)
T PRK14597 107 QDERGEVVEELLEGYAARIFQHEYDHLNGVLFIDRLPPAKRLLLRKKLMDIM 158 (166)
T ss_pred ECCCCCEEEEEEeCHHHHHHHHHhHhhCCEeehhccChhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888888777753
No 4
>PRK00150 def peptide deformylase; Reviewed
Probab=100.00 E-value=6e-52 Score=320.11 Aligned_cols=129 Identities=42% Similarity=0.759 Sum_probs=117.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEe-eceeccCCcCCCcccccCCcceEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMI-PYEEGCLSFPGIHADVERPESVKID 79 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~-~~~EgCLS~pg~~~~V~R~~~I~v~ 79 (144)
|++||++++|+||||||||+++|+||++..+.. ..+.++|||+|++.|.+.. ..+|||||+||+++.|+||.+|+|+
T Consensus 35 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~v~iNP~I~~~s~~~~~~~~EGCLS~pg~~~~V~R~~~I~v~ 112 (165)
T PRK00150 35 MFETMYAAPGVGLAAPQVGVSKRIIVIDVEDKE--GEPLVLINPEIISESSEEYLTYEEGCLSVPGVYGEVPRPERVTVK 112 (165)
T ss_pred HHHHHHhCCCcEEEhhhcCcceeEEEEEccCCC--CceeEEECCEEecCCCCeeccCCCCCCccCCeeeEecCcceeEEE
Confidence 789999999999999999999999999974322 2468999999998886655 4899999999999999999999999
Q ss_pred EEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 80 y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
|+|++|++++.+++||.|||||||+|||+|+||+||+++..+..+.+++++.
T Consensus 113 ~~d~~G~~~~~~~~g~~Ar~~QHE~DHL~G~l~~Drl~~~~~~~~~~~~~~~ 164 (165)
T PRK00150 113 ALDRDGKPFELEADGLLARCIQHEIDHLNGVLFIDRLSPLKRFRIKKKLKKI 164 (165)
T ss_pred EECCCCCEEEEEEeCHhhhHHhHHhHhhCCEEeeeecChhHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999998888887777764
No 5
>PRK14598 peptide deformylase; Provisional
Probab=100.00 E-value=5.1e-52 Score=326.29 Aligned_cols=130 Identities=38% Similarity=0.664 Sum_probs=118.8
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCC--CCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG--EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKI 78 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~--~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v 78 (144)
|++||++++|+||||||||+++|+||++...... ...+.+||||+|++.|++ ...+|||||+||+++.|+||.+|+|
T Consensus 34 M~~tm~~~~GvGLAApQVG~~~Ri~vid~~~~~~~~~~~~~v~INP~I~~~s~~-~~~~EGCLSvPg~~~~V~R~~~I~v 112 (187)
T PRK14598 34 MFESMYNASGIGLAAPQVGRSLRLLVVDVSCMKEYEDEKPMVVINPHILAVKGY-NAMEEGCLSVPGVQGDVVRPSSITL 112 (187)
T ss_pred HHHHHHhCCCeEEehhhcCCceeEEEEEcccccccccccceEEECCeeccCCCc-ccCCCCCccCCCcceEEeccCEEEE
Confidence 8999999999999999999999999999753321 123579999999998875 4589999999999999999999999
Q ss_pred EEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 79 DARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 79 ~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
+|+|++|++++.+++||.|||||||+|||+|+||+||+++.++..+.+++++.
T Consensus 113 ~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~LfiDrl~~~~~~~~~~~~~~~ 165 (187)
T PRK14598 113 KYRDEHFEERTEEFSGMMARVLQHEIDHLDGTLFVDRMQKRDRRKIQKELDAI 165 (187)
T ss_pred EEECCCCCEEEEEEecHhhhHHhHhhhccCCEEEEEecChhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988775
No 6
>TIGR00079 pept_deformyl peptide deformylase. Peptide deformylase (EC 3.5.1.88), also called polypeptide deformylase, is a metalloenzyme that uses water to release formate from the N-terminal formyl-L-methionine of bacterial and chloroplast peptides. This enzyme should not be confused with formylmethionine deformylase (EC 3.5.1.31) which is active on free N-formyl methionine and has been reported from rat intestine.
Probab=100.00 E-value=6.8e-52 Score=318.88 Aligned_cols=127 Identities=41% Similarity=0.696 Sum_probs=116.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++||++++|+||||||||+++||||++..++. ...+.+||||+|++.|++....+|||||+||+++.|.||.+|+|+|
T Consensus 33 M~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~-~~~~~v~iNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~y 111 (161)
T TIGR00079 33 MIETMYAEEGIGLAAPQVGIWKRMFVIHLEDDD-KEDPLVLINPKIIETSGEKSGLEEGCLSVPGVYGYVPRPEKVKIRG 111 (161)
T ss_pred HHHHHHhCCCeEEehhhcCcceeEEEEEccCCc-CccceEEECCeeccCCCcEeccCcCCCccCCccceecChhheEEEE
Confidence 789999999999999999999999999975432 1236799999999999987777899999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHH
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQL 128 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~ 128 (144)
+|++|++++.+++||.|||+|||+|||+|+||+||+++.++..+.+++
T Consensus 112 ~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~l~~D~l~~~~~~~~~~~~ 159 (161)
T TIGR00079 112 FDRFGKPFTIEASGLLARCIQHEMDHLNGVLFVDRISPLKPEKEKKEL 159 (161)
T ss_pred ECCCCCEEEEEEeCHHHhHHhHHhHhcCCEeeeeecChhhhhHHHHhh
Confidence 999999999999999999999999999999999999998887777665
No 7
>PRK14596 peptide deformylase; Provisional
Probab=100.00 E-value=7.8e-52 Score=327.94 Aligned_cols=141 Identities=35% Similarity=0.637 Sum_probs=122.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEe-CCCCC-C-----------CceeEEEcceeEeeCCcEeeceeccCCcCCCc
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP-VGERG-E-----------GEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIH 67 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~-~~~~~-~-----------~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~ 67 (144)
|++|||+++|+||||||||+++||||++. .+... . ..+.+||||+|++.|++. ..+|||||+||++
T Consensus 34 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~-~~~EGCLSvPg~~ 112 (199)
T PRK14596 34 MLETMFEARGVGLAAPQIGLSVRLFVAVEYADDEEEEEGEEAPLRSRVLREYVMVNPVITYRKGDQ-SGQEGCLSIPGLY 112 (199)
T ss_pred HHHHHHhCCCcEEehhhcCCceeEEEEEeccCccccccccccccccccccceEEECCEEecCCCcc-cCCcCcccccCcc
Confidence 89999999999999999999999999973 21110 0 025799999999977764 6899999999998
Q ss_pred c-cccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHhhcccccchhhh
Q 032284 68 A-DVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKRNMRIRLDFKAL 142 (144)
Q Consensus 68 ~-~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (144)
+ .|+||.+|+|+|+|++|++++++++||.|||||||+|||+|+||+||+++.++..+.+++.+.....+=+|||.
T Consensus 113 ~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (199)
T PRK14596 113 EEGVPRARQVRVEYQDLDGQKRTLEAEGYLARVFQHEIDHLDGILFFDRLPKAKREAFLEAHRRELAEMQRQAKAY 188 (199)
T ss_pred ceeeeccCEEEEEEECCCCCEEEEEEeChhhhhhhhhhhhcCCEeehhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 79999999999999999999999999999999999999999999999999988888888777666666677763
No 8
>PRK14595 peptide deformylase; Provisional
Probab=100.00 E-value=2.1e-51 Score=316.51 Aligned_cols=118 Identities=30% Similarity=0.500 Sum_probs=110.5
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++|||+.+|+||||||||+++|+||++... .++.++|||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 35 M~~tm~~~~gvGLAApQVG~~~ri~vi~~~~----~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (162)
T PRK14595 35 LEDTMYAQEAAALCAPQIGQSLQVAIIDMEM----EGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVES 110 (162)
T ss_pred HHHHHhhCCCcEEechhcCCceeEEEEEccC----CCceEEECCeeecCCCCEeeCCcCCccCCCcceEecCCCEEEEEE
Confidence 7899999999999999999999999998752 236899999999999998878999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHH
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLD 122 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~ 122 (144)
+|++|++++++++||.|||+|||+|||+|+||+||+++...+
T Consensus 111 ~D~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~Drl~~~~~~ 152 (162)
T PRK14595 111 YDVNGNKVELTAYDDVARMILHIIDQMNGIPFTERADRILTD 152 (162)
T ss_pred ECCCCCEEEEEEeCHHHHHHHHHhHccCCEEEeeecCccccc
Confidence 999999999999999999999999999999999999766654
No 9
>PF01327 Pep_deformylase: Polypeptide deformylase; InterPro: IPR023635 Peptide deformylase (PDF) is an essential metalloenzyme required for the removal of the formyl group at the N terminus of nascent polypeptide chains in eubacteria: 3.5.1.88 from EC []. The enzyme acts as a monomer and binds a single zinc ion, catalysing the reaction:: N-formyl-L-methionine + H2O = formate + methionyl peptide Catalytic efficiency strongly depends on the identity of the bound metal []. The structure of these enzymes is known [, ]. PDF, a member of the zinc metalloproteases family, comprises an active core domain of 147 residues and a C-terminal tail of 21 residue. The 3D fold of the catalytic core has been determined by X-ray crystallography and NMR. Overall, the structure contains a series of anti-parallel beta- strands that surround two perpendicular alpha-helices. The C-terminal helix contains the characteristic HEXXH motif of metalloenzymes, which is crucial for activity. The helical arrangement, and the way the histidine residues bind the zinc ion, is reminiscent of other metalloproteases, such as thermolysin or metzincins. However, the arrangement of secondary and tertiary structures of PDF, and the positioning of its third zinc ligand (a cysteine residue), are quite different. These discrepancies, together with notable biochemical differences, suggest that PDF constitutes a new class of zinc-metalloproteases. [].; PDB: 2OS1_A 2OS0_A 1LME_B 3QU1_A 1N5N_B 1S17_B 1LRY_A 1IX1_A 1WS1_A 1WS0_A ....
Probab=100.00 E-value=2.4e-51 Score=313.65 Aligned_cols=121 Identities=40% Similarity=0.749 Sum_probs=108.8
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCce--eEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE--IVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKI 78 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~--~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v 78 (144)
|++||++.+|+||||||||+++|+||++......+... .+||||+|+..|.++...||||||+||+++.|+||.+|+|
T Consensus 34 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v 113 (156)
T PF01327_consen 34 MFETMYAANGVGLAAPQIGIPKRIFVIDIPDEKPEPSEPETVLINPKITSSSEETVEDWEGCLSVPGIRGKVERPKKITV 113 (156)
T ss_dssp HHHHHHHTTBSEEEGGGGTS-BSEEEEEEETTSSSESEEEEEEEEEEEEESSEEEEEEEEEETTSTTEEEEEEEESEEEE
T ss_pred HHHHHHHhccceEehhhcCchheEEEEecCcccccCCccceEEECCEEecccCCcCccccCCCccCCccccCCCcceEEE
Confidence 78999999999999999999999999998765433222 5999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHH
Q 032284 79 DARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (144)
Q Consensus 79 ~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~ 121 (144)
+|+|++|++++.+++||.|||+|||+|||+|+||+||+++.+|
T Consensus 114 ~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~r 156 (156)
T PF01327_consen 114 RYYDLDGKPIELEAEGFLARCIQHEIDHLNGILFIDRLSPKKR 156 (156)
T ss_dssp EEEETTS-EEEEEEEHHHHHHHHHHHHHHTT--GGGGSSHHHH
T ss_pred EEECCCCeEEEEEEccccEEeeeehhhhhCCEehhhccCccCC
Confidence 9999999999999999999999999999999999999999875
No 10
>cd00487 Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) as the catalytic metal ion, which can be replaced with a nickel or cobalt ion with no loss of activity. There are two types of peptide deformylases, types I and II, which differ in structure only in the outer surface of the domain. Because these enzymes are essential only in prokaryotes (although eukaryotic gene sequences have been found), they are a target for a new class of antibacterial agents.
Probab=100.00 E-value=2.1e-49 Score=298.82 Aligned_cols=112 Identities=40% Similarity=0.726 Sum_probs=104.9
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++||++++|+||||||||+++|+||++.........+.+||||+|++.|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 30 m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~~ 109 (141)
T cd00487 30 MFETMYAAPGVGLAAPQIGVSKRIFVIDVPDEENKEPPLVLINPEIIESSGETEYGEEGCLSVPGYRGEVERPKKVTVRY 109 (141)
T ss_pred HHHHHHhCCCcEEEhhhcCCceeEEEEEcccccccccceEEECCeEeccCCCEeeCCcCCcCcCCcceEecCcCEEEEEE
Confidence 78999999999999999999999999998654223457899999999999998878999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCcee
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILF 112 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~ 112 (144)
+|++|++++.+++||.|||+|||+|||+|+||
T Consensus 110 ~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 141 (141)
T cd00487 110 LDEDGNPIELEAEGFLARCIQHEIDHLNGILF 141 (141)
T ss_pred ECCCCCEEEEEEeCHhhhhHhHHhHhhCCEEC
Confidence 99999999999999999999999999999997
No 11
>PRK09218 peptide deformylase; Validated
Probab=100.00 E-value=2.3e-46 Score=281.42 Aligned_cols=105 Identities=28% Similarity=0.502 Sum_probs=97.3
Q ss_pred CHHhhhcC--CCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEE
Q 032284 1 MFDVMYKT--DGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKI 78 (144)
Q Consensus 1 m~~tm~~~--~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v 78 (144)
|++||+++ +|+||||||||+++|+||++... .+.+||||+|++.|++. ..+|||||+||+. .|+||.+|+|
T Consensus 30 M~~tm~~~~~~gvGLAApQIGv~~ri~vi~~~~-----~~~vlINP~I~~~s~~~-~~~EGCLS~P~~~-~V~R~~~I~v 102 (136)
T PRK09218 30 LQDTLLANRDECVGMAANMIGVQKRIIIFSLGF-----VPVVMFNPVIVSKSGPY-ETEEGCLSLTGER-PTKRYEEITV 102 (136)
T ss_pred HHHHHHhcCCCCEEEEHHHCCcCceEEEEECCC-----CcEEEECCEEecCCCce-eCCccceecCCCc-cccCcceeEE
Confidence 79999998 58999999999999999998731 35799999999988875 5689999999997 8999999999
Q ss_pred EEEcCCCCEEEEEEecchhhhHHhHHhhhCCcee
Q 032284 79 DARDINGARFSVSLSDLPARVFQHEFDHLQGILF 112 (144)
Q Consensus 79 ~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~ 112 (144)
+|+|++|++++.+++||.|||+|||+|||+|+|+
T Consensus 103 ~~~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G~L~ 136 (136)
T PRK09218 103 KYLDRNWREQTQTFTGFTAQIIQHELDHCEGILI 136 (136)
T ss_pred EEECCCCCEEEEEEeChhhhhhhhHhhccCCEEC
Confidence 9999999999999999999999999999999985
No 12
>KOG3137 consensus Peptide deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-42 Score=274.33 Aligned_cols=131 Identities=63% Similarity=1.085 Sum_probs=120.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCC-------C-------CCCceeEEEcceeEeeCCcEeeceeccCCcCCC
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-------R-------GEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~-------~-------~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~ 66 (144)
|+++|+..+||||||||||+|.|++|+++..+ . ...+..||+||++..+|.+.+.+.|||+|+||+
T Consensus 113 m~~VMr~~~gVGLsAPQvGvp~q~~vle~~~alcrecP~~~ra~rqmepf~l~V~VNP~lk~~s~klv~F~EGClSv~Gf 192 (267)
T KOG3137|consen 113 MFDVMRKTDGVGLSAPQVGVPVQLMVLEPAGALCRECPEPGRAERQMEPFKLIVLVNPKLKKYSDKLVPFDEGCLSVPGF 192 (267)
T ss_pred HHHHHHhCCCccccCcccCCceEEEEecChHHHHhcCCChhhhHhhccCCCeEEEecchHhhhcccccccccccccccch
Confidence 79999999999999999999999999987541 1 124578999999999999999999999999999
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 67 ~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
++.|+||..|.|+++|.+|+.+++.++||.||+||||+|||+|.||+|+|++.....+...+..+
T Consensus 193 ~A~V~R~q~V~i~g~D~~Ger~~~~aSgw~ARI~QHE~DHL~G~Lf~DkM~~rtf~~V~~~~~~l 257 (267)
T KOG3137|consen 193 YAEVVRPQSVKIDGRDITGERFSISASGWPARIFQHEYDHLEGVLFFDKMTDRTFDSVREELEAL 257 (267)
T ss_pred hhcccccceEEEeeecCCCCEEEEecccchHHHHHhHhhhhcceeeeeecccHhHhHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999998877765554
No 13
>COG4740 Predicted metalloprotease [General function prediction only]
Probab=98.28 E-value=7.8e-07 Score=68.10 Aligned_cols=71 Identities=23% Similarity=0.384 Sum_probs=56.7
Q ss_pred ceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEEE-------cCCCC--------EEEEEEecchhhhHH
Q 032284 37 EEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDAR-------DINGA--------RFSVSLSDLPARVFQ 101 (144)
Q Consensus 37 ~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y~-------d~~G~--------~~~~~~~G~~Ar~~Q 101 (144)
..+.|+||+|++..+ ++...|.|.+-... ..|+||.+++|+.. |.--. +-++.++|..|.-+.
T Consensus 74 ~~YLflNPeIi~~EG-t~~RlEKCG~r~eR-elv~RPyR~~vr~d~~l~a~vdPg~~~IRvreL~k~~lrl~G~pAy~~a 151 (176)
T COG4740 74 DLYLFLNPEIIRAEG-TLTRLEKCGRRRER-ELVKRPYRLEVRHDGGLIARVDPGRRRIRVRELDKGTLRLEGIPAYNLA 151 (176)
T ss_pred heeeeeChhheeccc-eEEehhhhcchHHH-HHhcCCeEEEEecCceEEEEECCccceEEEEecCCCeEEEecCccchhH
Confidence 358999999997655 47789999987653 57899999998865 33222 235889999999999
Q ss_pred hHHhhhCC
Q 032284 102 HEFDHLQG 109 (144)
Q Consensus 102 HEiDHL~G 109 (144)
||+.||+|
T Consensus 152 HEleHLeg 159 (176)
T COG4740 152 HELEHLEG 159 (176)
T ss_pred HHHHHhhc
Confidence 99999998
No 14
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=46.45 E-value=21 Score=23.24 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=24.6
Q ss_pred cceEEEEEcCCCCEEEEEEecchhhhHHhH
Q 032284 74 ESVKIDARDINGARFSVSLSDLPARVFQHE 103 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHE 103 (144)
..+.++|.|.+|..+.+.-+.-...++++-
T Consensus 39 ~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~ 68 (81)
T smart00666 39 QSFTLKYQDEDGDLVSLTSDEDLEEAIEEY 68 (81)
T ss_pred CCeEEEEECCCCCEEEecCHHHHHHHHHHH
Confidence 578999999999998888877777776653
No 15
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=44.83 E-value=8.7 Score=28.39 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=17.5
Q ss_pred HHhhhcCCCeeEeccccCccccEEEEEeCC
Q 032284 2 FDVMYKTDGIGLSAPQVGINVQLMVFNPVG 31 (144)
Q Consensus 2 ~~tm~~~~gvGLAApQIG~~~ri~vi~~~~ 31 (144)
.+-..+.-++-|+.|||| |++++.
T Consensus 69 v~yWektF~IDl~~PqIG------VV~vtd 92 (120)
T cd03074 69 VPYWEKTFGIDLFRPQIG------VVNVTD 92 (120)
T ss_pred hHHHHhhcCcccCCCcee------eEeccc
Confidence 344556679999999999 566543
No 16
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=43.01 E-value=25 Score=23.47 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=25.0
Q ss_pred CcceEEEEEcCCCCEEEEEEecchhhhHHhH
Q 032284 73 PESVKIDARDINGARFSVSLSDLPARVFQHE 103 (144)
Q Consensus 73 ~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHE 103 (144)
....+|...|.+|+.+++.++.-...+++.|
T Consensus 53 ~g~yev~~~~~dG~~~ev~vD~~tG~V~~~k 83 (83)
T PF13670_consen 53 DGCYEVEARDKDGKKVEVYVDPATGEVVKEK 83 (83)
T ss_pred CCEEEEEEEECCCCEEEEEEcCCCCeEeecC
Confidence 3347888999999999999998877776643
No 17
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=32.95 E-value=56 Score=25.23 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=28.1
Q ss_pred ccCCcCCCcccccCCcceEEEEEcCC-CCEEEEEEe--cchhhhHHhHH
Q 032284 59 GCLSFPGIHADVERPESVKIDARDIN-GARFSVSLS--DLPARVFQHEF 104 (144)
Q Consensus 59 gCLS~pg~~~~V~R~~~I~v~y~d~~-G~~~~~~~~--G~~Ar~~QHEi 104 (144)
+++|-.-+.. +. ...|+.+|.|.. ++...++++ .|.+|++||=.
T Consensus 117 ~~is~~Ri~~-~~-~~~V~f~y~d~~~~~~~~~~l~~~efi~r~l~Hvp 163 (183)
T PF04986_consen 117 PAISNSRIVS-YD-DGTVTFRYKDHRTKKTKTLTLSAEEFIRRLLQHVP 163 (183)
T ss_pred ccccccceEE-ec-cceeEEEEEcCCCCcEEEEEechHHHHHHHHhhcC
Confidence 4444444432 22 677899999974 445555555 59999999943
No 18
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=32.10 E-value=28 Score=24.48 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=33.9
Q ss_pred eccCCcCCCcccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCcee-eecCCHHHHHHHHHHH
Q 032284 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILF-FERMTDDVLDSIREQL 128 (144)
Q Consensus 58 EgCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~-iDr~~~~~~~~~~~~~ 128 (144)
-=|-++|..-..+. . .....+.-|.+--+|+| ++|.+. .-.++....+.+.+.+
T Consensus 8 afcy~~P~v~dvv~-----~-----------Vv~i~d~~~YV~LleY~-iegmIl~~selsr~rirsi~kll 62 (86)
T PHA02858 8 AFCYVFPNINEVTK-----G-----------IVFVKDNIFYVKLIDYG-LEALIVNYVNVNADRAEKLKKKL 62 (86)
T ss_pred EEEEecCCCCeEEE-----E-----------EEEEeccEEEEEEecCc-cceEEecHHHHhHHHHHhhhhhh
Confidence 35999999854442 2 33455666778888999 888765 4445555545555544
No 19
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=30.59 E-value=66 Score=21.73 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=27.0
Q ss_pred CcEeeceeccCCcCCCcccccCCcceEEEEEcCCCCEEEEEEecc
Q 032284 51 NKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDL 95 (144)
Q Consensus 51 ~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~ 95 (144)
.+.....|-|.|--.++..+. ++.|..|++..++++|-
T Consensus 29 ~Er~nVeEYciSEGWvrv~~g-------ka~DR~G~Pl~iklkG~ 66 (71)
T PF11730_consen 29 KERTNVEEYCISEGWVRVAAG-------KALDRRGNPLTIKLKGT 66 (71)
T ss_pred eEcccceeEeccCCEEEeecC-------cccccCCCeeEEEEcce
Confidence 445567899999655433332 35699999999999984
No 20
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=30.47 E-value=69 Score=22.18 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=22.8
Q ss_pred CCcceEEEEEcCCCCEEEEEEecchhhhHH
Q 032284 72 RPESVKIDARDINGARFSVSLSDLPARVFQ 101 (144)
Q Consensus 72 R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~Q 101 (144)
-...+.|+|.|.+|.-++++-+--++-.+|
T Consensus 40 ~~~~flIKYkD~dGDlVTIts~~dL~~A~~ 69 (81)
T cd06401 40 SSDDVLIKYKDEDGDLITIFDSSDLSFAIQ 69 (81)
T ss_pred CcccEEEEEECCCCCEEEeccHHHHHHHHh
Confidence 346899999999999999887655444433
No 21
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=27.80 E-value=28 Score=26.10 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=32.4
Q ss_pred CcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCcee
Q 032284 73 PESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILF 112 (144)
Q Consensus 73 ~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~ 112 (144)
|..+.+.|+|.+|+..+++..|=.-+++|-.+|- |+-.
T Consensus 85 ~rpa~~~~~~~n~eg~TWTGrGR~P~wI~kAl~~--gKs~ 122 (128)
T COG2916 85 ARPAKYKYYDENGEGKTWTGRGRTPAWIGKALDE--GKSL 122 (128)
T ss_pred CCCCCCCeecCCCCCCcccCCCCCcHHHHHHHHc--cCcc
Confidence 4556889999999999999999999999999987 6543
No 22
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=27.79 E-value=91 Score=18.49 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.1
Q ss_pred ceEEE-EEcCCCCEEEEEEecch
Q 032284 75 SVKID-ARDINGARFSVSLSDLP 96 (144)
Q Consensus 75 ~I~v~-y~d~~G~~~~~~~~G~~ 96 (144)
.+.|. |.|.+|+.+...-.||.
T Consensus 3 ~~~v~g~~~~~Gkrk~~~k~GF~ 25 (46)
T PF14657_consen 3 YYRVYGYDDETGKRKQKTKRGFK 25 (46)
T ss_pred EEEEEEEECCCCCEEEEEcCCCC
Confidence 45664 88889999999999975
No 23
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=27.21 E-value=66 Score=20.66 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=23.4
Q ss_pred cceEEEEEcCCCCEEEEEEecchhhhHHh
Q 032284 74 ESVKIDARDINGARFSVSLSDLPARVFQH 102 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G~~Ar~~QH 102 (144)
..+.++|.|.+|..+.+.-+.-...++++
T Consensus 39 ~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~ 67 (81)
T cd05992 39 VSFKLKYPDEDGDLVTISSDEDLEEAIEE 67 (81)
T ss_pred CcEEEEeeCCCCCEEEeCCHHHHHHHHHH
Confidence 68899999999999888887666555555
No 24
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=26.40 E-value=28 Score=28.00 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=9.8
Q ss_pred hhhHHhHHhhhC
Q 032284 97 ARVFQHEFDHLQ 108 (144)
Q Consensus 97 Ar~~QHEiDHL~ 108 (144)
=-+.+||+|||+
T Consensus 77 ~em~d~E~~HL~ 88 (204)
T COG2941 77 KEMADEEIDHLA 88 (204)
T ss_pred HHHHHHHHHHHH
Confidence 346889999997
No 25
>PF06486 DUF1093: Protein of unknown function (DUF1093); InterPro: IPR006542 These are a family of small (about 115 amino acids) uncharacterised proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.; PDB: 3NPP_B 2K5Q_A 2K5W_A.
Probab=26.22 E-value=83 Score=20.70 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=16.1
Q ss_pred cceEEEEEcCCCCEEEEEEecc
Q 032284 74 ESVKIDARDINGARFSVSLSDL 95 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G~ 95 (144)
..=.+.++|.+|+++++++...
T Consensus 28 Y~Y~l~~yd~~G~~k~l~f~~~ 49 (78)
T PF06486_consen 28 YEYTLKGYDEDGKEKTLTFTAS 49 (78)
T ss_dssp EEEEEEEEETT--EEEEEEEES
T ss_pred EEEEEEEECCCCCEEEEEEEec
Confidence 3457889999999999998864
No 26
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=25.19 E-value=98 Score=21.55 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCEEEEEEecchhhhHH
Q 032284 74 ESVKIDARDINGARFSVSLSDLPARVFQ 101 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G~~Ar~~Q 101 (144)
..+++.|.|.+|..+++.-+.-+...++
T Consensus 46 ~~ftlky~DeeGDlvtIssdeEL~~A~~ 73 (87)
T cd06402 46 KNFQLFWKDEEGDLVAFSSDEELVMALG 73 (87)
T ss_pred CcEEEEEECCCCCEEeecCHHHHHHHHH
Confidence 6889999999999999887665544443
No 27
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=24.93 E-value=99 Score=21.51 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=26.0
Q ss_pred cCCcceEEEEEcCCCCEEEEEEecchhhhHHh
Q 032284 71 ERPESVKIDARDINGARFSVSLSDLPARVFQH 102 (144)
Q Consensus 71 ~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QH 102 (144)
.+...+.++|.|.+|..+.++-+.-+.-|+|.
T Consensus 41 ~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 41 SPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred CCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 33578899999999999999888877777664
No 28
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=24.47 E-value=89 Score=21.55 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCEEEEEEecch
Q 032284 75 SVKIDARDINGARFSVSLSDLP 96 (144)
Q Consensus 75 ~I~v~y~d~~G~~~~~~~~G~~ 96 (144)
.+.++|.|.+|+++.++-+.-+
T Consensus 39 ~f~lKYlDde~e~v~lssd~eL 60 (81)
T cd06396 39 DIQIKYVDEENEEVSVNSQGEY 60 (81)
T ss_pred cceeEEEcCCCCEEEEEchhhH
Confidence 8999999999999998876543
No 29
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=23.22 E-value=95 Score=26.19 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=21.2
Q ss_pred hhCCceeeecCCHHHHH-HHHHHHHHh-hcccc
Q 032284 106 HLQGILFFERMTDDVLD-SIREQLEKR-NMRIR 136 (144)
Q Consensus 106 HL~Gil~iDr~~~~~~~-~~~~~~~~~-~~~~~ 136 (144)
-|.|+.||||.++.+-- .+.+-.+++ ++++.
T Consensus 133 ~L~gvvfIdR~r~~~Ai~~l~~~~~~mkk~~~k 165 (276)
T KOG2848|consen 133 YLSGVVFIDRSRREKAIDTLDKCAERMKKENRK 165 (276)
T ss_pred HHcCceEEecCCHHHHHHHHHHHHHHHHhCCee
Confidence 47899999999887764 455556665 33343
No 30
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=22.58 E-value=96 Score=21.08 Aligned_cols=27 Identities=4% Similarity=-0.039 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCEEEEEEecchhhhH
Q 032284 74 ESVKIDARDINGARFSVSLSDLPARVF 100 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G~~Ar~~ 100 (144)
..+.++|.|.+|..+.++-+.-+.-|+
T Consensus 39 ~~f~LkY~Ddegd~v~ltsd~DL~eai 65 (82)
T cd06407 39 SAFDLKYLDDDEEWVLLTCDADLEECI 65 (82)
T ss_pred CeeEEEEECCCCCeEEeecHHHHHHHH
Confidence 589999999999999988876554443
No 31
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=22.19 E-value=76 Score=25.49 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=15.5
Q ss_pred hCCceeeecCCHHHHHH---HHHHHHH
Q 032284 107 LQGILFFERMTDDVLDS---IREQLEK 130 (144)
Q Consensus 107 L~Gil~iDr~~~~~~~~---~~~~~~~ 130 (144)
-.|+||+|-++...+.. +++-++.
T Consensus 106 h~GVLflDE~~ef~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 106 HRGVLFLDELNEFDRSVLDALRQPLED 132 (206)
T ss_dssp TTSEEEECETTTS-HHHHHHHHHHHHH
T ss_pred cCCEEEechhhhcCHHHHHHHHHHHHC
Confidence 37999999887666544 4444444
No 32
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=21.49 E-value=53 Score=24.67 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=26.7
Q ss_pred CcceEEEEEcCCCCEEEEEEecchhhhHHhHHh
Q 032284 73 PESVKIDARDINGARFSVSLSDLPARVFQHEFD 105 (144)
Q Consensus 73 ~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiD 105 (144)
|...+.+|.|.+|...+++..|=.-..|+..+|
T Consensus 92 ~~p~KYr~~d~~G~~kTWTGrGR~P~wi~~al~ 124 (134)
T PRK10328 92 PRPAKYRFTDVNGETKTWTGQGRTPKPIAQALA 124 (134)
T ss_pred CCCCccCCCCCCCCcCcccCCCCCcHHHHHHHH
Confidence 333456666899999999999999999998886
No 33
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=21.34 E-value=2e+02 Score=25.53 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=50.0
Q ss_pred ceeccCCcCCCcccccCCcceEEEEEcCCCCEEEEE--EecchhhhHHhHHhh-hCCceeeecCCHHHHHHHHHHH
Q 032284 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVS--LSDLPARVFQHEFDH-LQGILFFERMTDDVLDSIREQL 128 (144)
Q Consensus 56 ~~EgCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~--~~G~~Ar~~QHEiDH-L~Gil~iDr~~~~~~~~~~~~~ 128 (144)
..=||.|+----..+..+..|++.|.-.+|..+..+ .+--.++.++-=.|. +-|--.+|+++....+...+++
T Consensus 140 ~T~Gl~TLR~eHV~l~~~~~v~fdF~GKdgir~~~~v~vd~~l~k~L~~~~~~k~pg~~LF~~l~s~~lN~yLke~ 215 (391)
T smart00435 140 DTVGCCSLRVEHVTLKPPNKVIFDFLGKDSIRYYNEVEVDKQVFKNLKIFMKPKKPGDDLFDRLNTSKLNKHLKEL 215 (391)
T ss_pred CCEeecccchhheEecCCCEEEEEEeCCCCcEEEEEEecCHHHHHHHHHHhcCCCChHHHHhhCCHHHHHHHHHHH
Confidence 345899987765556567899999999999998555 445667776666552 4455445778777766544433
No 34
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=20.85 E-value=1.4e+02 Score=21.45 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.3
Q ss_pred cceEEEEEcCCCCEEEEEEec
Q 032284 74 ESVKIDARDINGARFSVSLSD 94 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G 94 (144)
..=++.++|.+|++.+++++.
T Consensus 55 y~Y~~~~yd~~G~~k~i~f~~ 75 (114)
T TIGR01655 55 YEYKLDAYDSSGKKHKVKFMA 75 (114)
T ss_pred EEEEEEEECCCCCEEEEEEEc
Confidence 566899999999999999964
No 35
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=20.49 E-value=1.2e+02 Score=20.52 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCEEEEEEecchhhhH
Q 032284 76 VKIDARDINGARFSVSLSDLPARVF 100 (144)
Q Consensus 76 I~v~y~d~~G~~~~~~~~G~~Ar~~ 100 (144)
|+++|.|..-.++..+++++..-+.
T Consensus 1 IeitYldayk~Er~~~fe~~~ef~~ 25 (72)
T PF15507_consen 1 IEITYLDAYKQERTQTFEDYNEFMR 25 (72)
T ss_pred CEEEEeccceeEEEEEeCCHHHHHH
Confidence 6899999999999999999776544
No 36
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=20.47 E-value=57 Score=22.44 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhcccccchhh
Q 032284 119 DVLDSIREQLEKRNMRIRLDFKA 141 (144)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~ 141 (144)
.-+.++.++|+-....++|||++
T Consensus 21 ~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 21 SLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred HHHHHHHHHhcCChhhcEEEecC
Confidence 44667888898889999999986
No 37
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=20.01 E-value=1.7e+02 Score=20.31 Aligned_cols=31 Identities=6% Similarity=-0.068 Sum_probs=26.6
Q ss_pred CCcceEEEEEcCCCCEEEEEEecchhhhHHh
Q 032284 72 RPESVKIDARDINGARFSVSLSDLPARVFQH 102 (144)
Q Consensus 72 R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QH 102 (144)
+.....+.|.|-+|..+.++-+.-+.-|+.|
T Consensus 40 ~~~~~~L~YlDDEgD~VllT~D~DL~e~v~i 70 (86)
T cd06409 40 ETHLYALSYVDDEGDIVLITSDSDLVAAVLV 70 (86)
T ss_pred cCCcccEEEEcCCCCEEEEeccchHHHHHHH
Confidence 3578899999999999999999987777765
Done!