Query 032284
Match_columns 144
No_of_seqs 106 out of 1107
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 19:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u04_A Peptide deformylase 1; 100.0 3.4E-55 1.2E-59 343.8 13.4 133 1-133 37-186 (190)
2 3pn3_A Peptide deformylase 1B, 100.0 2E-55 6.9E-60 345.8 11.6 137 1-137 32-168 (193)
3 1xeo_A Peptide deformylase; co 100.0 1.5E-54 5E-59 334.6 13.1 128 1-131 34-161 (168)
4 1n5n_A Peptide deformylase; me 100.0 2.9E-54 9.8E-59 336.2 13.3 129 1-131 47-175 (180)
5 3qu1_A Peptide deformylase 2; 100.0 2.1E-54 7.1E-59 334.6 12.2 130 1-133 37-167 (171)
6 1rl4_A Formylmethionine deform 100.0 2E-54 7E-59 339.0 12.1 131 1-131 40-171 (188)
7 3e3u_A Peptide deformylase; me 100.0 4.2E-54 1.4E-58 339.3 13.7 140 1-140 40-187 (197)
8 2ew5_A Peptide deformylase; in 100.0 3.4E-54 1.2E-58 336.0 12.3 130 1-131 34-166 (181)
9 4dr9_A Peptide deformylase; hy 100.0 2.2E-54 7.6E-59 339.7 10.5 136 1-136 50-186 (192)
10 2w3t_A Peptide deformylase; pr 100.0 9.7E-54 3.3E-58 335.1 13.1 128 1-131 34-161 (188)
11 1lme_A PDF, peptide deformylas 100.0 3.1E-54 1E-58 334.9 10.2 126 1-131 45-170 (176)
12 1v3y_A Peptide deformylase; pr 100.0 6.5E-54 2.2E-58 337.0 11.7 135 1-136 33-179 (192)
13 1y6h_A Peptide deformylase; op 100.0 1.3E-54 4.3E-59 337.3 6.7 132 1-132 37-173 (177)
14 3uwb_A RIIA-RIIB membrane-asso 100.0 5.1E-54 1.7E-58 327.6 9.2 120 1-120 34-153 (154)
15 1ws0_A Peptide deformylase 1; 100.0 1.1E-53 3.9E-58 326.3 6.9 120 1-124 35-154 (156)
16 3dld_A Peptide deformylase; ba 100.0 2.4E-53 8E-58 328.7 8.7 123 1-123 35-162 (171)
17 3g5k_A Peptide deformylase, mi 100.0 3.2E-52 1.1E-56 325.2 9.1 121 1-121 39-173 (183)
18 1zxz_A PDF, peptide deformylas 100.0 8.7E-52 3E-56 326.0 7.3 121 1-121 38-172 (197)
19 2okl_A Peptide deformylase 2; 100.0 4.5E-51 1.5E-55 319.2 9.7 121 1-121 38-173 (185)
20 2os0_A Peptide deformylase; PD 100.0 1.2E-50 4.2E-55 317.4 9.8 121 1-121 37-176 (188)
21 1lm4_A Peptide deformylase PDF 100.0 2.2E-50 7.4E-55 317.5 10.3 121 1-121 48-184 (194)
22 3svj_P Peptide deformylase 3; 100.0 4.1E-50 1.4E-54 317.8 9.1 121 1-121 49-192 (203)
23 3l87_A Peptide deformylase; hy 100.0 4.1E-49 1.4E-53 318.2 9.2 121 1-121 83-227 (238)
24 2kvz_A ISPE; structural genomi 33.9 32 0.0011 22.9 2.9 26 71-96 4-31 (85)
25 2bkf_A Zinc-finger protein NBR 30.9 40 0.0014 22.7 3.0 21 74-94 44-64 (87)
26 3uip_D E3 SUMO-protein ligase 28.5 22 0.00074 22.9 1.2 17 99-115 48-64 (67)
27 3npp_A PFAM DUF1093 family pro 26.7 61 0.0021 21.2 3.3 21 74-94 28-48 (87)
28 3u12_A USP37 protein; structur 26.3 42 0.0014 24.5 2.6 73 68-140 44-128 (141)
29 2k5q_A Hypothetical membrane a 26.3 59 0.002 22.2 3.3 20 75-94 36-55 (105)
30 1vd2_A Protein kinase C, IOTA 21.9 46 0.0016 22.2 1.9 24 70-93 41-64 (89)
31 3qii_A PHD finger protein 20; 21.2 29 0.00098 23.3 0.8 45 51-97 26-70 (85)
32 2k5w_A Hypothetical cytosolic 20.9 81 0.0028 22.1 3.2 23 74-96 33-55 (117)
33 2kt7_A Putative peptidoglycan 20.0 69 0.0024 21.9 2.6 22 73-94 5-28 (102)
No 1
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi structural genomics; HET: BB2; 1.70A {Ehrlichia chaffeensis} SCOP: d.167.1.0 PDB: 3oca_A
Probab=100.00 E-value=3.4e-55 Score=343.79 Aligned_cols=133 Identities=32% Similarity=0.560 Sum_probs=123.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCC-----------------CCceeEEEcceeEeeCCcEeeceeccCCc
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----------------EGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----------------~~~~~v~INP~I~~~s~~~~~~~EgCLS~ 63 (144)
|++|||+++||||||||||+++|+||++...... +..+.+||||+|++.|+++...+|||||+
T Consensus 37 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSv 116 (190)
T 3u04_A 37 MFETMHANQGLGLAAVQVGVHKRILVMNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSV 116 (190)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECCC-------------CTTCBSSEEEEEEEEEEEEEECSCEEEEEECCTTS
T ss_pred HHHHHHHcCCeEEehhhcCCceeEEEEEcCccccccccccccccccccccccCCCEEEECCEEEecCCCEeeccCCCCCc
Confidence 7999999999999999999999999999864311 23578999999999999988899999999
Q ss_pred CCCcccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHhhc
Q 032284 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKRNM 133 (144)
Q Consensus 64 pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~~~ 133 (144)
||+++.|+||.+|+|+|+|++|++++++++||.|||||||+|||+|+||+||+++.++.++.+++++++.
T Consensus 117 Pg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~k~~~ 186 (190)
T 3u04_A 117 PGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKKKER 186 (190)
T ss_dssp TTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHHHC
T ss_pred CCcceeeccchheEEEEECCCCCEEEEEEEChhhhhhhhHHHhcCCEeeeeecCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753
No 2
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision pathway, N induced-FIT, hydrolase-hydrolase inhibitor complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB: 3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A 3pn6_A 3m6r_A 3cpm_A
Probab=100.00 E-value=2e-55 Score=345.76 Aligned_cols=137 Identities=74% Similarity=1.249 Sum_probs=127.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++|||+++|+||||||||+++|+||++..+...+..+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 32 M~eTM~~a~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 111 (193)
T 3pn3_A 32 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDA 111 (193)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECTTCSTTSSCCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEE
T ss_pred HHHHHHHCCCeEEEccccCcceEEEEEECCCCcCCcccEEEECCEEEecCCcEEEeecccccCCCCCCcCcCCCEEEEEE
Confidence 89999999999999999999999999998654434457899999999999998889999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHhhccccc
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKRNMRIRL 137 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~~~~~~~ 137 (144)
+|++|++++++++||.|||||||+|||+|+||+||+++.++.++.+++++++...+.
T Consensus 112 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr~~~~~k~~k~~~~~~~ 168 (193)
T 3pn3_A 112 RDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEE 168 (193)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHTTHHHHHHHHHHHHH
T ss_pred EcCCCCEEEEEEEChhhhhhhHHHHHhCCEeeeeecCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998665443
No 3
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A 1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A* 1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A 4al2_A 3k6l_A* 1dff_A 1def_A ...
Probab=100.00 E-value=1.5e-54 Score=334.64 Aligned_cols=128 Identities=41% Similarity=0.635 Sum_probs=120.4
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++|||+++|+||||||||+++|+||++..++. ..+.+||||+|++.|++.. .+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~--~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (168)
T 1xeo_A 34 MFETMYAEEGIGLAATQVDIHQRIIVIDVSENR--DERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRA 110 (168)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS--CCCEEEEEEEEEEEECCBC-CEECCTTSTTCCEECCBCSEEEEEE
T ss_pred HHHHHHHCCCEEEEhHhCCcceEEEEEEccCCc--CccEEEECCEEeccCCCEE-EecCccCcCCEEEEeEcccEEEEEE
Confidence 799999999999999999999999999986432 2468999999999999876 8999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
+|++|++++++++||.|||+|||+|||+|+||+||+++.++..+.+++++.
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~ 161 (168)
T 1xeo_A 111 LDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKL 161 (168)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEeCCeEEeeeehhHHhCCEEEeeeCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998875
No 4
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP: d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Probab=100.00 E-value=2.9e-54 Score=336.16 Aligned_cols=129 Identities=40% Similarity=0.696 Sum_probs=121.7
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++|||+++|+||||||||+++|+||++..++. ..+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 47 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~--~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 124 (180)
T 1n5n_A 47 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDK--SEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKA 124 (180)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECSTTS--CCEEEEEEEEEEESCSCEEEEEECCTTSTTCCEEEEEESCEEEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEEccCCC--CccEEEECCEEecCCCCEEecccCCcCcCCcceEEeccCEEEEEE
Confidence 799999999999999999999999999986432 257899999999999998778999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
+|++|++++++++||.|||||||+|||+|+||+||+++.++..+.+++++.
T Consensus 125 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~ 175 (180)
T 1n5n_A 125 LDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQ 175 (180)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHBTCCGGGGSCHHHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEcCCeEEeeeehhHhhCCEeEeeecCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998875
No 5
>3qu1_A Peptide deformylase 2; structural genomics, center for structural genomics of infec diseases, csgid, metal binding; 1.80A {Vibrio cholerae} SCOP: d.167.1.0
Probab=100.00 E-value=2.1e-54 Score=334.64 Aligned_cols=130 Identities=37% Similarity=0.581 Sum_probs=121.3
Q ss_pred CHHhhhc-CCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEE
Q 032284 1 MFDVMYK-TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (144)
Q Consensus 1 m~~tm~~-~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~ 79 (144)
|++|||+ ++|+||||||||+++|+||++..++. ..+.+||||+|++ |++....+|||||+||+++.|+||.+|+|+
T Consensus 37 M~eTm~~~~~GvGLAApQIGv~~ri~vid~~~~~--~~~~vlINP~I~~-~~~~~~~~EGCLSvPg~~~~V~R~~~I~V~ 113 (171)
T 3qu1_A 37 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNR--DQPLVLINPKVVS-GSNKEMGQEGCLSVPDYYADVERYTSVVVE 113 (171)
T ss_dssp HHHHHHHSSSCCEEEGGGGTCCBCEEEECCCSSS--CCCEEEEEEEEEE-EEEEEEEEECCTTSTTCCEEEEEEEEEEEE
T ss_pred HHHHHHhcCCcEEEEccccCcceEEEEEEccCCC--CccEEEECCEEEe-CCCeEEcccCccCcCCccccccCchhhEEE
Confidence 7999999 99999999999999999999986432 3578999999997 777778899999999999999999999999
Q ss_pred EEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHhhc
Q 032284 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKRNM 133 (144)
Q Consensus 80 y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~~~ 133 (144)
|+|++|++++++++||.|||+|||+|||+|+||+||+++.++.++.++++|++.
T Consensus 114 ~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~k~~~ 167 (171)
T 3qu1_A 114 ALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVK 167 (171)
T ss_dssp EECTTSCEEEEEECSTHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCEEEEEEECHHHHHHhHHHHhhCCEehhhhCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988643
No 6
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide DEFO plasmodium, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1 PDB: 1rqc_A 1jym_A
Probab=100.00 E-value=2e-54 Score=338.99 Aligned_cols=131 Identities=46% Similarity=0.773 Sum_probs=117.7
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCC-CCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~-~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~ 79 (144)
|++|||+++||||||||||+++|+||++.... .....+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+
T Consensus 40 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~ 119 (188)
T 1rl4_A 40 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSIS 119 (188)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEC-----------CEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEEccccccCcccceEEECCEEEecCCcEEeccccccccCCccEEEecccEEEEE
Confidence 79999999999999999999999999997431 12234689999999999999877899999999999999999999999
Q ss_pred EEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 80 y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
|+|++|++++++++||.|||||||+|||+|+||+||+++.++..+.+++++.
T Consensus 120 ~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~ 171 (188)
T 1rl4_A 120 YYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNEL 171 (188)
T ss_dssp EECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCHHHHHHHHHHHHHH
T ss_pred EECCCCCEEEEEEeCCeEEEeEehhHhhCCEEEEeecCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998875
No 7
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.2e-54 Score=339.25 Aligned_cols=140 Identities=26% Similarity=0.465 Sum_probs=126.0
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCC--CCCCceeEEEcceeEeeCCcE-----eeceeccCCcCCCcccccCC
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE--RGEGEEIVLVNPRVNKYSNKM-----IPYEEGCLSFPGIHADVERP 73 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~--~~~~~~~v~INP~I~~~s~~~-----~~~~EgCLS~pg~~~~V~R~ 73 (144)
|++|||+++||||||||||+++|+||++..++ .....+.+||||+|+..++.. ...+|||||+||+++.|+||
T Consensus 40 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~vlINP~I~~~~~~~~~~e~~~~~EGCLSvPg~~~~V~R~ 119 (197)
T 3e3u_A 40 MYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRA 119 (197)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTBCTTSCSEEEEEEEEEEESCCCCSCCCTTTCEEECTTSTTCEEECCCC
T ss_pred HHHHHHHCCCeEEEccccCcceEEEEEEcCcccccccccceEEEcCEEEccCcceeccccccccCCCCCcCCCceeccCC
Confidence 79999999999999999999999999998653 222357899999999655432 36899999999999999999
Q ss_pred cceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHhh-cccccchh
Q 032284 74 ESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKRN-MRIRLDFK 140 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~~-~~~~~~~~ 140 (144)
.+|+|+|+|++|++++++++||.|||||||+|||+|+||+||+++.++.++.+++++.. +...++|.
T Consensus 120 ~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~k~~~~~~~~~~~ 187 (197)
T 3e3u_A 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWL 187 (197)
T ss_dssp SEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHHHHHHHHHTCSSTTCEEC
T ss_pred CeEEEEEECCCCCEEEEEEEChhhhhhhhhhHhhCCEeeheecCHHHHHHHHHHHHhcccCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999974 77777763
No 8
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Probab=100.00 E-value=3.4e-54 Score=336.00 Aligned_cols=130 Identities=33% Similarity=0.575 Sum_probs=120.3
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCC--CCCce-eEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER--GEGEE-IVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVK 77 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~~-~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~ 77 (144)
|++|||+++|+||||||||+++|+||++..+.. ....+ .+||||+|+ .|+++...+|||||+||+++.|+||.+|+
T Consensus 34 M~eTm~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~vlINP~I~-~s~~~~~~~EGCLSvPg~~~~V~R~~~I~ 112 (181)
T 2ew5_A 34 MYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINPKFI-ETGGSMMYKEGCLSVPGFYEEVERFEKVK 112 (181)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCCTTSCCCGGGCEEEEEEEEE-EEECCEEEEECCTTSTTCCEEEEECSEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEECCCcccccccCccEEEECCEEE-EcCCEEEcccCCcccCCCcceeccccEEE
Confidence 799999999999999999999999999986421 22245 899999999 88886778999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 78 IDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 78 v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
|+|+|++|++++++++||.|||+|||+|||+|+||+||+++.++..+.++++++
T Consensus 113 V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~ 166 (181)
T 2ew5_A 113 IEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEL 166 (181)
T ss_dssp EEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHHHHHHHHC
T ss_pred EEEECCCCCEEEEEEeCceEEeeeehhHHhCCEeEeeeCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875
No 9
>4dr9_A Peptide deformylase; hydrolase-hydrolase inhibitor complex; HET: BB2; 1.90A {Synechococcus elongatus}
Probab=100.00 E-value=2.2e-54 Score=339.71 Aligned_cols=136 Identities=40% Similarity=0.657 Sum_probs=124.3
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++|||+++|+||||||||+++|+||++...+.....+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 50 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 129 (192)
T 4dr9_A 50 MLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSY 129 (192)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCSSEEEECCCC-----CCEEEEEEEEEEEEEEEEEEEECCTTSTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHHcCCeEEechhcCCceeEEEEEcCccccCcccEEEECCEEEECCCCEeeccCCCCCcCCeeeEecccceEEEEE
Confidence 89999999999999999999999999998654333457899999999999988889999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh-hcccc
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR-NMRIR 136 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~-~~~~~ 136 (144)
+|++|++++++++||.|||+|||+|||+|+||+||+++..+...+.+++.+ +++|+
T Consensus 130 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~~~~~v~ 186 (192)
T 4dr9_A 130 KDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDKKGFAVQAVR 186 (192)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCCCHHHHHHHHHHTTCCGGGCC
T ss_pred ECCCCCEEEEEEEChhhhhhhhHhHhhCCEeeEEEeCcHHHHHHHHHHhccccccee
Confidence 999999999999999999999999999999999999999999888888887 46676
No 10
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Probab=100.00 E-value=9.7e-54 Score=335.08 Aligned_cols=128 Identities=41% Similarity=0.635 Sum_probs=120.3
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++|||+++|+||||||||+++|+||++..++. ..+.+||||+|++.|++.. .+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~--~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~V~~ 110 (188)
T 2w3t_A 34 MFETMYAEEGIGLAATQVDIHQRIIVIDVSENR--DERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRA 110 (188)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS--CCCEEEEEEEEEEEESCEE-EEECCTTSTTCCEEEEECSEEEEEE
T ss_pred HHHHHHhCCCEEEEhHHcCcceEEEEEEccCCc--CceEEEECCEEEecCCCEE-eecCccCcCCEEEEEEcccEEEEEE
Confidence 799999999999999999999999999986432 2468999999999999877 8999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
+|++|++++++++||.|||||||+|||+|+||+||+++.++..+.+++++.
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~ 161 (188)
T 2w3t_A 111 LDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKL 161 (188)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEECCeEEeeeehHHHhCCEeEeeecCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888874
No 11
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=100.00 E-value=3.1e-54 Score=334.95 Aligned_cols=126 Identities=37% Similarity=0.672 Sum_probs=108.7
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++|||+++|+||||||||+++|+||++..+ .+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 45 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~-----~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 119 (176)
T 1lme_A 45 MIETMYHYDGVGLAAPQVGISQRFFVMDVGN-----GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKY 119 (176)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECSSS-----CCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESEEEEEE
T ss_pred HHHHHHHCCCeEEEehhcCcceEEEEEEcCC-----ceEEEECCEEEccCCcEEeccCCccCcCCcceEEecCCEEEEEE
Confidence 7999999999999999999999999999853 26899999999999998778999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHh
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKR 131 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~ 131 (144)
+|++|++++++++||.|||||||+|||+|+||+||+++.++..+.+++++.
T Consensus 120 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~ 170 (176)
T 1lme_A 120 QNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDI 170 (176)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBCC-------------
T ss_pred ECCCCCEEEEEEeCCeEEEeeehhHhhCCEeeeeeCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888875
No 12
>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1
Probab=100.00 E-value=6.5e-54 Score=337.02 Aligned_cols=135 Identities=35% Similarity=0.610 Sum_probs=119.3
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEE-EeCCCCC----------CCceeEEEcceeEeeCCcEeeceeccCCcCCCcc-
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVF-NPVGERG----------EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHA- 68 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi-~~~~~~~----------~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~- 68 (144)
|++|||+++||||||||||+++|+||+ +..++.. ...+.+||||+|++.|++.. .+|||||+||+++
T Consensus 33 M~eTM~~~~GvGLAApQIGv~~ri~Vi~d~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~g 111 (192)
T 1v3y_A 33 MLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVE-GTEGCLSLPGLYSE 111 (192)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------CTTTCSCEEEEEEEEEEEEECCEE-EEECCTTSTTCCEE
T ss_pred HHHHHHhCCCcEEEecccCcceEEEEEEccCccccccccccccccccCceEEECCEEEEcCCcEE-EeCCCCCcCCEecc
Confidence 899999999999999999999999999 7643210 13468999999999999876 8999999999999
Q ss_pred cccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHhhcccc
Q 032284 69 DVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKRNMRIR 136 (144)
Q Consensus 69 ~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~~~~~~ 136 (144)
.|+||.+|+|+|+|++|++++++++||.|||||||+|||+|+||+||+++.++..+.+++++.....+
T Consensus 112 ~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~~~~~ 179 (192)
T 1v3y_A 112 EVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAELVRFQ 179 (192)
T ss_dssp EEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHTHHHHHHHH
T ss_pred cccccCEEEEEEECCCCCEEEEEEeccEEEEeehhhHhhCCEeEEEecCHhHhHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999888776544433
No 13
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB: 1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Probab=100.00 E-value=1.3e-54 Score=337.33 Aligned_cols=132 Identities=36% Similarity=0.672 Sum_probs=121.3
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCC-----CCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcc
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPES 75 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~ 75 (144)
|++|||+++|+||||||||+++|+||++..+... ...+.+||||+|++.|+++...+|||||+||+++.|+||.+
T Consensus 37 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~ 116 (177)
T 1y6h_A 37 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQ 116 (177)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCTTSTTSCCCCCEEEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESE
T ss_pred HHHHHHHCCCeEEEehhcCCceeEEEEEccCccccccccccCcEEEECCEEEEcCCCEEecccCCcccCCeeeeeeccce
Confidence 7999999999999999999999999999853211 11368999999999999987789999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHHHHHHHHhh
Q 032284 76 VKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLEKRN 132 (144)
Q Consensus 76 I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~~~~~~~~~ 132 (144)
|+|+|+|++|++++++++||.|||||||+|||+|+||+||+++.++..+.++++++.
T Consensus 117 I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~~ 173 (177)
T 1y6h_A 117 IRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSSH 173 (177)
T ss_dssp EEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBSCTTSEEEHHHHHHHS
T ss_pred EEEEEECCCCCEEEEEEeCceeEehhhhHHHhCCEeeeeecChhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998888888888875
No 14
>3uwb_A RIIA-RIIB membrane-associated protein; actinonin, probable peptide deformylase hydrolase-antibiotic complex; HET: BB2; 1.70A {Synechococcus phage s-ssm7} PDB: 3uwa_A*
Probab=100.00 E-value=5.1e-54 Score=327.61 Aligned_cols=120 Identities=40% Similarity=0.695 Sum_probs=110.1
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++|||+++|+||||||||+++|+||++...+.....+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~~Tm~~~~GvGLAApQIGv~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~ 113 (154)
T 3uwb_A 34 MCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLFDEGCLSVPDQNGEVLRPKSIKVTF 113 (154)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCBTTTBSCEEEEEEEEEEEECSCEEEEEEEETTEEEEEEEEEEESCEEEEE
T ss_pred HHHHHHHCCCcEEEccccCccEEEEEEEccccccCcccEEEECCEEEECCCcEEecccCccCcCCcceeccCcceeEEEE
Confidence 89999999999999999999999999998643222357899999999999998888999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHH
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~ 120 (144)
+|++|++++++++||.|||+|||+|||+|+||+||+++++
T Consensus 114 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~e 153 (154)
T 3uwb_A 114 QNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFNDKE 153 (154)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCC---
T ss_pred ECCCCCEEEEEEEChhhhhhhhHHHhhCCEeeeEEeCCcC
Confidence 9999999999999999999999999999999999999764
No 15
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A*
Probab=100.00 E-value=1.1e-53 Score=326.29 Aligned_cols=120 Identities=37% Similarity=0.643 Sum_probs=109.9
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcceEEEE
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y 80 (144)
|++|||+++|+||||||||+++|+||++..+.. .+.+||||+|++.|++. ..+|||||+||+++.|+||.+|+|+|
T Consensus 35 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~---~~~vlINP~I~~~s~~~-~~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (156)
T 1ws0_A 35 MHETMLIADGVGLAAPQVGVSLQVAVVDVDDDT---GKIELINPSILEKRGEQ-VGPEGCLSFPGLYGEVERADYIKVRA 110 (156)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTT---CEEEEEEEEEEEEEEEE-EEEECCTTSTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEhHHcCcceeEEEEEccCCc---CcEEEECCEEEccCCCE-EeccCCcccCCeeeEeecccEEEEEE
Confidence 799999999999999999999999999986432 24899999999999887 67999999999999999999999999
Q ss_pred EcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHHH
Q 032284 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSI 124 (144)
Q Consensus 81 ~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~~ 124 (144)
+|++|++++++++||.|||+|||+|||+|+||+||+++.+++++
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~ 154 (156)
T 1ws0_A 111 QNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVTRYYEENE 154 (156)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTEEEECC---
T ss_pred ECCCCCEEEEEEeCceEEEeEehhHhhCCEeeeeEcCHHHHHHh
Confidence 99999999999999999999999999999999999998776654
No 16
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas oryzae PV} SCOP: d.167.1.0
Probab=100.00 E-value=2.4e-53 Score=328.67 Aligned_cols=123 Identities=33% Similarity=0.498 Sum_probs=113.5
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCCC-----CCceeEEEcceeEeeCCcEeeceeccCCcCCCcccccCCcc
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPES 75 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~ 75 (144)
|++|||+++|+||||||||+++|+||++...... ...+.+||||+|++.|+++...+|||||+||+++.|+||.+
T Consensus 35 M~eTm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~ 114 (171)
T 3dld_A 35 MFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRY 114 (171)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCSSEEEEEESSCSSSCSCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEEEEEEEEESE
T ss_pred HHHHHHHcCCEEEEccccCCceeEEEEEcccccccccccccCCEEEECCEEEEcCCceeecCCCccccCCceEeeeCChh
Confidence 8999999999999999999999999999864211 12478999999999999988899999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHHHH
Q 032284 76 VKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDS 123 (144)
Q Consensus 76 I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~~~ 123 (144)
|+|+|+|++|++++++++||.|||+|||+|||+|+||+||+++.++..
T Consensus 115 I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr~~ 162 (171)
T 3dld_A 115 IRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFG 162 (171)
T ss_dssp EEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCSCGGGCE
T ss_pred cEEEEECCCCCEEEEEEeChhhhhhhhHhHhcCCEeehhcCCHHHhhh
Confidence 999999999999999999999999999999999999999999887753
No 17
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal-bindi mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Probab=100.00 E-value=3.2e-52 Score=325.16 Aligned_cols=121 Identities=34% Similarity=0.544 Sum_probs=110.6
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCCC--------------CCCceeEEEcceeEeeCCcEeeceeccCCcCCC
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER--------------GEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--------------~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~ 66 (144)
|++|||+++|+||||||||+++|+||++..+.. ...++.+||||+|++.|++....+|||||+||+
T Consensus 39 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~ 118 (183)
T 3g5k_A 39 LVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGF 118 (183)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHTSCHHHHHHHTCCCEEEEEEEEEEEEEEEEEEEEEEECCTTSTTE
T ss_pred HHHHHHHcCCeEEeccccCCceeEEEEEcCccccccccccccccccccccCceEEECCeEEecCCCEEecccCccCcCCc
Confidence 799999999999999999999999999975311 011357999999999999888899999999999
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHH
Q 032284 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (144)
Q Consensus 67 ~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~ 121 (144)
++.|+||.+|+|+|+|++|++++++++||.|||||||+|||+|+||+||++++.+
T Consensus 119 ~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~s~ 173 (183)
T 3g5k_A 119 LACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 173 (183)
T ss_dssp EEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTSCGGGC
T ss_pred cEEeeCcceeEEEEECCCCCEEEEEEeChhheehhhHHHHhCCEeEEEEeCHHHh
Confidence 9999999999999999999999999999999999999999999999999998654
No 18
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=100.00 E-value=8.7e-52 Score=326.01 Aligned_cols=121 Identities=39% Similarity=0.634 Sum_probs=110.0
Q ss_pred CHHhhhcCCCeeEeccccCccccEEEEEeCCC--------------CCCCceeEEEcceeEeeCCcEeeceeccCCcCCC
Q 032284 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE--------------RGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (144)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~--------------~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~ 66 (144)
|++|||+++||||||||||+++|+||++.... .....+.+||||+|++.|+++...+|||||+||+
T Consensus 38 M~eTM~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~ 117 (197)
T 1zxz_A 38 MIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGF 117 (197)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHSSCHHHHHHTTCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEE
T ss_pred HHHHHHhCCCcEEEccccCcceEEEEEEcCcccccccccccccccccCCCCceEEECCEEEecCCCEEeeeeCCcccCCe
Confidence 79999999999999999999999999986421 1111358999999999999987889999999999
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHH
Q 032284 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (144)
Q Consensus 67 ~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~ 121 (144)
++.|+||.+|+|+|+|++|++++++++||.|||||||+|||+|+||+||+++..+
T Consensus 118 ~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 172 (197)
T 1zxz_A 118 RAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTF 172 (197)
T ss_dssp EEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTBCTTCC
T ss_pred eeeEecccEEEEEEECCCCCEEEEEEeChhhhHHHHHHHHhCCEeeeeecCHHHH
Confidence 9999999999999999999999999999999999999999999999999998544
No 19
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus} PDB: 1lqy_A*
Probab=100.00 E-value=4.5e-51 Score=319.23 Aligned_cols=121 Identities=32% Similarity=0.581 Sum_probs=109.1
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEEeCCCCCCCceeEEEcceeEeeCCcEe--eceeccCCcCC-
Q 032284 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMI--PYEEGCLSFPG- 65 (144)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~--~~~EgCLS~pg- 65 (144)
|++||++ ++|+||||||||+++|+||++..++.+...+.+||||+|++.|++.. ..+|||||+||
T Consensus 38 M~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~ 117 (185)
T 2okl_A 38 MIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDRE 117 (185)
T ss_dssp HHHHHHHHTSHHHHHHTTCCCCSEEEGGGGTCCBSEEEEEEECTTCCEEEEEEEEEEEEEECSSEEECTTCCCCTTCCSC
T ss_pred HHHHHHhhhhcchhccccCCCeEEEEhhhcCcCeeEEEEEccCccCCccceEEECCEEEccCCcCccCCCCccCccccCe
Confidence 7899953 68999999999999999999986433233468999999999999875 46999999997
Q ss_pred CcccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHH
Q 032284 66 IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (144)
Q Consensus 66 ~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~ 121 (144)
+++.|+||.+|+|+|+|++|++++++++||.|||+|||+|||+|+||+||+++...
T Consensus 118 ~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 173 (185)
T 2okl_A 118 VPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKENP 173 (185)
T ss_dssp CCSCCCEESEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCSSCT
T ss_pred eeEEeecccEEEEEEECCCCCEEEEEEeCceEEehhhhHHHhCCEeeeeecCccCC
Confidence 99999999999999999999999999999999999999999999999999988654
No 20
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Probab=100.00 E-value=1.2e-50 Score=317.41 Aligned_cols=121 Identities=26% Similarity=0.493 Sum_probs=107.5
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEEeCC-CCCC---CceeEEEcceeEeeCCcEe--eceeccCC
Q 032284 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVG-ERGE---GEEIVLVNPRVNKYSNKMI--PYEEGCLS 62 (144)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~-~~~~---~~~~v~INP~I~~~s~~~~--~~~EgCLS 62 (144)
|++||++ ++|+||||||||+++|+||++..+ ...+ ..+.+||||+|++.|++.. ..+|||||
T Consensus 37 M~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLS 116 (188)
T 2os0_A 37 MLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLS 116 (188)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC---------EEEEEEEEEEEEECSCEEEETTCCCCTT
T ss_pred HHHHHHhhhhcchhcccccCCcEEEEhhhcCcceeEEEEECCCcccccccccccEEEEcCEEEecCCcEecCCCCcCcce
Confidence 7899953 689999999999999999999854 2111 2468999999999999865 46999999
Q ss_pred cCC-CcccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHH
Q 032284 63 FPG-IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (144)
Q Consensus 63 ~pg-~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~ 121 (144)
+|| +++.|+||.+|+|+|+|++|++++++++||.|||+|||+|||+|+||+||+++...
T Consensus 117 vPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 176 (188)
T 2os0_A 117 VDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENP 176 (188)
T ss_dssp CCSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCSSST
T ss_pred ECCCeEEEeecccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEeeeEEcCCcCC
Confidence 997 99999999999999999999999999999999999999999999999999988654
No 21
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A 2ai9_A 1lmh_A 1q1y_A*
Probab=100.00 E-value=2.2e-50 Score=317.49 Aligned_cols=121 Identities=33% Similarity=0.628 Sum_probs=109.0
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEEeCCC-CCCCceeEEEcceeEeeCCcEe--eceeccCCcCC
Q 032284 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMI--PYEEGCLSFPG 65 (144)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~-~~~~~~~v~INP~I~~~s~~~~--~~~EgCLS~pg 65 (144)
|++||++ ++|+||||||||+++|+||++..+. .+...+.+||||+|++.|++.. ..+|||||+||
T Consensus 48 M~eTM~~~~~~~~~~~y~~~~GVGLAApQIGv~~Ri~vid~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~EGCLSvPg 127 (194)
T 1lm4_A 48 MREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDD 127 (194)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCSSSCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSS
T ss_pred HHHHHHhhhhcchhhhcccCCceEEEecccCcceeEEEEEcCCccccccccEEEECCEEEecCCcEecCCCCcCCceECC
Confidence 7899953 6899999999999999999998543 1123468999999999999865 46999999997
Q ss_pred -CcccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHH
Q 032284 66 -IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (144)
Q Consensus 66 -~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~ 121 (144)
+++.|+||.+|+|+|+|++|++++++++||.|||||||+|||+|+||+||+++..+
T Consensus 128 ~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 184 (194)
T 1lm4_A 128 NVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHP 184 (194)
T ss_dssp CCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCSSST
T ss_pred ceeEEeccccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEeeeeecCcccC
Confidence 99999999999999999999999999999999999999999999999999988765
No 22
>3svj_P Peptide deformylase 3; alpha-beta, metal binding protein, HYDR hydrolase inhibitor complex; HET: 4LI; 1.55A {Streptococcus pneumoniae} SCOP: d.167.1.1 PDB: 3str_P* 3sw8_P* 4eox_P* 1lm6_A 2aia_A* 2ai7_A* 2aie_P* 2os3_A*
Probab=100.00 E-value=4.1e-50 Score=317.76 Aligned_cols=121 Identities=29% Similarity=0.493 Sum_probs=107.5
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEEeCCCC------CC--CceeEEEcceeEeeCCcEe--ecee
Q 032284 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGER------GE--GEEIVLVNPRVNKYSNKMI--PYEE 58 (144)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~------~~--~~~~v~INP~I~~~s~~~~--~~~E 58 (144)
|++|||+ ++||||||||||+++|+||++..+.. .. ..+.+||||+|++.|++.. ..+|
T Consensus 49 M~eTM~~~~d~~~~~~~~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~E 128 (203)
T 3svj_P 49 MMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGE 128 (203)
T ss_dssp HHHHHHHHTSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECC---------CEEEEEEEEEEEEEEECSSEEEETTCC
T ss_pred HHHHHHHhccchhhhccccCCcEEEeccccCCceeEEEEEcCccccccccccccCcccEEEECCEEEecCCceecccccc
Confidence 7899987 47999999999999999999986431 11 1368999999999998864 4789
Q ss_pred ccCCcC-CCcccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHH
Q 032284 59 GCLSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (144)
Q Consensus 59 gCLS~p-g~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~ 121 (144)
||||+| |+.+.|+||.+|+|+|+|++|++++++++||.|||+|||+|||+|+||+||+++..+
T Consensus 129 GCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 192 (203)
T 3svj_P 129 GCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDP 192 (203)
T ss_dssp CCTTCCSCCCSCBCEESSEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCSSCT
T ss_pred CccCcCCCcEEEecCcceeEEEEECCCCCEEEEEEEChhhhhhhhHhHhcCCEeeeeEcCCcCc
Confidence 999999 689999999999999999999999999999999999999999999999999998655
No 23
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR biosynthesis; 2.00A {Streptococcus mutans}
Probab=100.00 E-value=4.1e-49 Score=318.22 Aligned_cols=121 Identities=31% Similarity=0.468 Sum_probs=107.8
Q ss_pred CHHhhhc------------CCCeeEeccccCccccEEEEEeCCCC-------CC--CceeEEEcceeEeeCCcEe--ece
Q 032284 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGER-------GE--GEEIVLVNPRVNKYSNKMI--PYE 57 (144)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~-------~~--~~~~v~INP~I~~~s~~~~--~~~ 57 (144)
|++|||+ ++||||||||||+++||||++..+.. .. ..+.+||||+|++.|++.. ..+
T Consensus 83 M~eTM~~a~d~~~~~~~~~a~GVGLAAPQIGv~kRi~Vid~~~~~~~~~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~ 162 (238)
T 3l87_A 83 MLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADG 162 (238)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECCCC----CCSSSEEEEEEEEEEEEEEECSSEEEETTC
T ss_pred HHHHHHHhccchhhhhcccCCceEEeccccCCceeEEEEEcCcccccccccccccCcccEEEECCEEEeccCceeccccc
Confidence 7899987 47999999999999999999985431 11 1368999999999998864 479
Q ss_pred eccCCcC-CCcccccCCcceEEEEEcCCCCEEEEEEecchhhhHHhHHhhhCCceeeecCCHHHH
Q 032284 58 EGCLSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (144)
Q Consensus 58 EgCLS~p-g~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gil~iDr~~~~~~ 121 (144)
|||||+| |+.+.|+||.+|+|+|+|++|++++++++||.|||||||+|||+|+||+||+++..+
T Consensus 163 EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~lAr~iQHEiDHLdGiLfiDrls~~~~ 227 (238)
T 3l87_A 163 EGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNP 227 (238)
T ss_dssp CCCTTCCSCCCSCBCEESCEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCSSCT
T ss_pred CCCcccCCCccEEecChhheEEEEECCCCCEEEEEEeChhhhHHhHHhHhcCCEeeeeecCCCCC
Confidence 9999999 688999999999999999999999999999999999999999999999999998665
No 24
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=33.91 E-value=32 Score=22.86 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=19.8
Q ss_pred cCCcceEEEEEcCCCCEEE--EEEecch
Q 032284 71 ERPESVKIDARDINGARFS--VSLSDLP 96 (144)
Q Consensus 71 ~R~~~I~v~y~d~~G~~~~--~~~~G~~ 96 (144)
.....|+|.|.|.+|+... ..++|..
T Consensus 4 ~k~~~VtV~YvDe~Gn~La~~~~ltG~v 31 (85)
T 2kvz_A 4 GKPNQVTVNYLDENNTSIAPSLYLSGLF 31 (85)
T ss_dssp SCCCCEEEEEECSSSCEEEEEEEECCCT
T ss_pred ccCCeEEEEEECCCCCCCCCCeEEeeeC
Confidence 4567899999999999865 4556643
No 25
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=30.86 E-value=40 Score=22.67 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=17.2
Q ss_pred cceEEEEEcCCCCEEEEEEec
Q 032284 74 ESVKIDARDINGARFSVSLSD 94 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G 94 (144)
..+.|+|.|++|.++.+.-++
T Consensus 44 ~~~~ikY~DEenD~v~i~Sq~ 64 (87)
T 2bkf_A 44 NTIQIKYLDEENEEVSINSQG 64 (87)
T ss_dssp SSEEEEEECTTSCEEEECSHH
T ss_pred CceEEEEEcCCCCEEEEecHH
Confidence 478999999999998876543
No 26
>3uip_D E3 SUMO-protein ligase ranbp2; UBC9, nuclear pore complex, ligase isomerase-protein binding complex; HET: CME; 2.29A {Homo sapiens} PDB: 3uio_D* 3uin_D
Probab=28.52 E-value=22 Score=22.94 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=13.4
Q ss_pred hHHhHHhhhCCceeeec
Q 032284 99 VFQHEFDHLQGILFFER 115 (144)
Q Consensus 99 ~~QHEiDHL~Gil~iDr 115 (144)
=|+|++=-|||+||.|-
T Consensus 48 dfetavrklng~ly~~~ 64 (67)
T 3uip_D 48 DFETAVKKLNGKLYLDG 64 (67)
T ss_dssp CHHHHHHTTTTCCCC--
T ss_pred HHHHHHHHhCCceecCC
Confidence 37899999999999873
No 27
>3npp_A PFAM DUF1093 family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.15A {Bacillus subtilis}
Probab=26.69 E-value=61 Score=21.20 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=18.1
Q ss_pred cceEEEEEcCCCCEEEEEEec
Q 032284 74 ESVKIDARDINGARFSVSLSD 94 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G 94 (144)
..=++.++|.+|++.++++.+
T Consensus 28 y~Y~l~~yde~G~~k~l~f~~ 48 (87)
T 3npp_A 28 TEYTLDGYNASGKKEEVTFFA 48 (87)
T ss_dssp EEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEc
Confidence 456899999999999999975
No 28
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=26.27 E-value=42 Score=24.53 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=46.0
Q ss_pred ccccCCcceEEEEEcCCCCE-EEEEEe-cchhhhHHhH---Hhh------hCCceeeecCCHHHHHHHHHHHHHh-hccc
Q 032284 68 ADVERPESVKIDARDINGAR-FSVSLS-DLPARVFQHE---FDH------LQGILFFERMTDDVLDSIREQLEKR-NMRI 135 (144)
Q Consensus 68 ~~V~R~~~I~v~y~d~~G~~-~~~~~~-G~~Ar~~QHE---iDH------L~Gil~iDr~~~~~~~~~~~~~~~~-~~~~ 135 (144)
..|+|-++|++..+=-.|+. .++.+. .....|++|= .-| =+..||+|+++..+-+.++.=|.+. ++++
T Consensus 44 E~VE~kkkv~LVv~F~~G~~~ktFQL~nNIksVvlr~~g~~qn~LhLTlknn~fLfIdKLs~~DaeqLK~FLd~v~Qnk~ 123 (141)
T 3u12_A 44 EIVEKENKVSLVVHYNTGGIPRIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFLSIDKVPSKDAEEMRLFLDAVHQNRL 123 (141)
T ss_dssp EEEEETTEEEEEEEETTCSCCEEEECTTTEEEEEEEECSTTEEEEEEEETTCCEEEEEEEEHHHHHHHHHHHHHHHTTC-
T ss_pred eeeeccceEEEEEEEeCCCccEEEEcccceeeEEEecCCCccceEEEEEecCcEEEEecCCHHHHHHHHHHHHHhcccCC
Confidence 45777777776555445555 677766 3666666662 112 2678999999999998888888875 6666
Q ss_pred ccchh
Q 032284 136 RLDFK 140 (144)
Q Consensus 136 ~~~~~ 140 (144)
|-+.|
T Consensus 124 q~~~k 128 (141)
T 3u12_A 124 PAAMK 128 (141)
T ss_dssp -----
T ss_pred CCCcc
Confidence 65543
No 29
>2k5q_A Hypothetical membrane associated protein BCR97A; NESG, Q812L6 protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=26.26 E-value=59 Score=22.22 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=17.8
Q ss_pred ceEEEEEcCCCCEEEEEEec
Q 032284 75 SVKIDARDINGARFSVSLSD 94 (144)
Q Consensus 75 ~I~v~y~d~~G~~~~~~~~G 94 (144)
.=++.++|.+|++.++++++
T Consensus 36 ~Y~l~~yde~Gkek~l~f~~ 55 (105)
T 2k5q_A 36 EYKLTGFDKDGKEKELEFTA 55 (105)
T ss_dssp EEEEEEECSSCCEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEec
Confidence 46889999999999999976
No 30
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=21.89 E-value=46 Score=22.23 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=18.7
Q ss_pred ccCCcceEEEEEcCCCCEEEEEEe
Q 032284 70 VERPESVKIDARDINGARFSVSLS 93 (144)
Q Consensus 70 V~R~~~I~v~y~d~~G~~~~~~~~ 93 (144)
+.+...++++|.|++|.++++.-+
T Consensus 41 ~~~~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 41 FDNEQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp CCSSCCEEEEECCSSSCCEECCSH
T ss_pred CCCCCeEEEEEECCCCCcccccCH
Confidence 346678999999999988776443
No 31
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=21.16 E-value=29 Score=23.29 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=32.7
Q ss_pred CcEeeceeccCCcCCCcccccCCcceEEEEEcCCCCEEEEEEecchh
Q 032284 51 NKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPA 97 (144)
Q Consensus 51 ~~~~~~~EgCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~A 97 (144)
++....|..|...|+....|.-...-+|.|+| |...++++....+
T Consensus 26 d~VlArW~D~~yYPAkI~sV~~~~~YtV~F~D--G~~etvk~~~IKp 70 (85)
T 3qii_A 26 EQVLACWSDCRFYPAKVTAVNKDGTYTVKFYD--GVVQTVKHIHVKA 70 (85)
T ss_dssp CEEEEECTTSCEEEEEEEEECTTSEEEEEETT--SCEEEEEGGGEEE
T ss_pred CEEEEEeCCCCEeeEEEEEECCCCeEEEEEeC--CCeEEecHHHccc
Confidence 33345678899899876677666778999999 8877777655443
No 32
>2k5w_A Hypothetical cytosolic protein BCR103A; unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=20.90 E-value=81 Score=22.13 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=19.8
Q ss_pred cceEEEEEcCCCCEEEEEEecch
Q 032284 74 ESVKIDARDINGARFSVSLSDLP 96 (144)
Q Consensus 74 ~~I~v~y~d~~G~~~~~~~~G~~ 96 (144)
..=++.++|.+|++.++++++-.
T Consensus 33 Y~Y~l~~yDe~GkeK~v~f~~~k 55 (117)
T 2k5w_A 33 RNYTLPAYDEDGVKKQITFRSTK 55 (117)
T ss_dssp ECEEEEEEETTCCEEEEEECCCT
T ss_pred EEEEEEEEcCCCCEEEEEEEeec
Confidence 45689999999999999998754
No 33
>2kt7_A Putative peptidoglycan bound protein (LPXTG motif); immunoglobulin fold, all-beta, peptidoglycan binding protein, structural genomics; NMR {Listeria monocytogenes}
Probab=20.01 E-value=69 Score=21.89 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=17.1
Q ss_pred CcceEEEEEcCCCCEEE--EEEec
Q 032284 73 PESVKIDARDINGARFS--VSLSD 94 (144)
Q Consensus 73 ~~~I~v~y~d~~G~~~~--~~~~G 94 (144)
...|+|.|.|.+|++.. ..++|
T Consensus 5 ~~~VtV~YvDe~Gn~Ia~~~~ltG 28 (102)
T 2kt7_A 5 NFTVKVEYVDADGAEIAPSDTLTD 28 (102)
T ss_dssp TCCEEEEEEETTSSEEEEEEEECS
T ss_pred CCEEEEEEEcCCCCCCCCCEeecC
Confidence 46799999999999865 34555
Done!