BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032285
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BW3|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A
           Protein From Barley Seed
 pdb|1BW4|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A
           Protein From Barley Seed
          Length = 125

 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 92/117 (78%), Gaps = 3/117 (2%)

Query: 30  TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLR 87
           TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQAACG+CLR
Sbjct: 9   TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLR 68

Query: 88  VTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 143
           VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct: 69  VTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125


>pdb|1JIW|I Chain I, Crystal Structure Of The Apr-Aprin Complex
 pdb|2RN4|A Chain A, Solution Structure Of The Alkaline Proteinase Inhibitor
          Aprin From Pseudomonas Aeruginosa
          Length = 106

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 37 EQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGG 75
          E  G+DL   +A    W  ++P AWR      A    GG
Sbjct: 37 EASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGG 75


>pdb|2W9X|A Chain A, The Active Site Of A Carbohydrate Esterase Displays
           Divergent Catalytic And Non-Catalytic Binding Functions
 pdb|2W9X|B Chain B, The Active Site Of A Carbohydrate Esterase Displays
           Divergent Catalytic And Non-Catalytic Binding Functions
          Length = 366

 Score = 25.8 bits (55), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 90  NSGTGAQQIVRIVDQCANGGL-DLDEGVFKKLDTNG 124
           ++G  A+Q+ ++V Q   GGL  +++ VFK LD +G
Sbjct: 297 SNGEIAEQVGKVVAQLKGGGLHQVEQIVFKGLDYSG 332


>pdb|2RAL|A Chain A, Crystal Structure Analysis Of Double Cysteine Mutant Of
           S.Epidermidis Adhesin Sdrg: Evidence For The Dock,Lock
           And Latch Ligand Binding Mechanism
 pdb|2RAL|B Chain B, Crystal Structure Analysis Of Double Cysteine Mutant Of
           S.Epidermidis Adhesin Sdrg: Evidence For The Dock,Lock
           And Latch Ligand Binding Mechanism
          Length = 340

 Score = 25.8 bits (55), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 92  GTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGF 131
           G+    ++++ DQ    G D  +G+ K  D   + Y   F
Sbjct: 21  GSNVNHLIKVTDQSITEGYDDSDGIIKAHDAENLIYDVTF 60


>pdb|1R17|A Chain A, Crystal Structure Analysis Of S.Epidermidis Adhesin Sdrg
           Binding To Fibrinogen (Adhesin-Ligand Complex)
 pdb|1R17|B Chain B, Crystal Structure Analysis Of S.Epidermidis Adhesin Sdrg
           Binding To Fibrinogen (Adhesin-Ligand Complex)
 pdb|1R19|A Chain A, Crystal Structure Analysis Of S.Epidermidis Adhesin Sdrg
           Binding To Fibrinogen (Apo Structure)
 pdb|1R19|B Chain B, Crystal Structure Analysis Of S.Epidermidis Adhesin Sdrg
           Binding To Fibrinogen (Apo Structure)
 pdb|1R19|C Chain C, Crystal Structure Analysis Of S.Epidermidis Adhesin Sdrg
           Binding To Fibrinogen (Apo Structure)
 pdb|1R19|D Chain D, Crystal Structure Analysis Of S.Epidermidis Adhesin Sdrg
           Binding To Fibrinogen (Apo Structure)
          Length = 343

 Score = 25.8 bits (55), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 92  GTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGF 131
           G+    ++++ DQ    G D  +G+ K  D   + Y   F
Sbjct: 21  GSNVNHLIKVTDQSITEGYDDSDGIIKAHDAENLIYDVTF 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.475 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,084,298
Number of Sequences: 62578
Number of extensions: 159689
Number of successful extensions: 268
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 6
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)