Query 032285
Match_columns 143
No_of_seqs 131 out of 645
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 12:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00967 Barwin: Barwin family 100.0 2E-36 4.3E-41 218.6 4.5 118 24-141 2-119 (119)
2 PLN03024 Putative EG45-like do 99.9 1.8E-24 4E-29 159.7 11.5 112 1-137 1-124 (125)
3 PLN00193 expansin-A; Provision 99.9 8E-21 1.7E-25 154.8 13.8 120 11-142 14-159 (256)
4 PLN00050 expansin A; Provision 99.9 6.3E-21 1.4E-25 154.8 11.4 130 1-142 1-151 (247)
5 PLN03023 Expansin-like B1; Pro 99.8 2.2E-19 4.8E-24 145.7 12.6 109 26-142 25-142 (247)
6 smart00837 DPBB_1 Rare lipopro 99.7 1.3E-16 2.9E-21 111.1 6.3 64 68-136 2-87 (87)
7 PF03330 DPBB_1: Rare lipoprot 99.6 5.4E-17 1.2E-21 109.8 2.7 63 69-136 3-78 (78)
8 PF07249 Cerato-platanin: Cera 99.5 2E-13 4.3E-18 100.2 10.1 98 34-140 5-113 (119)
9 TIGR00413 rlpA rare lipoprotei 99.0 4E-09 8.6E-14 83.8 10.6 57 82-142 35-94 (208)
10 COG4305 Endoglucanase C-termin 99.0 2E-09 4.3E-14 84.0 7.1 71 66-142 57-133 (232)
11 COG0797 RlpA Lipoproteins [Cel 98.8 1.4E-08 3E-13 82.0 7.3 56 82-141 119-177 (233)
12 PRK10672 rare lipoprotein A; P 98.5 1.8E-06 3.9E-11 73.7 11.1 53 82-138 115-170 (361)
13 PF02015 Glyco_hydro_45: Glyco 94.9 0.019 4.1E-07 45.8 2.2 57 56-113 57-121 (201)
14 TIGR03170 flgA_cterm flagella 66.1 10 0.00023 26.8 3.8 26 79-104 92-117 (122)
15 PF13956 Ibs_toxin: Toxin Ibs, 65.8 3.8 8.3E-05 20.6 1.0 12 1-12 1-12 (19)
16 TIGR02645 ARCH_P_rylase putati 57.4 26 0.00056 31.6 5.5 39 81-121 28-69 (493)
17 PRK12618 flgA flagellar basal 54.5 21 0.00046 26.6 3.9 27 79-105 108-134 (141)
18 PF05968 Bacillus_PapR: Bacill 54.4 11 0.00025 23.3 1.9 22 1-22 1-22 (48)
19 PHA03370 virion protein US2; P 54.4 15 0.00033 30.4 3.2 24 98-121 8-34 (269)
20 PF11714 Inhibitor_I53: Thromb 52.8 15 0.00032 24.8 2.4 24 1-24 1-24 (78)
21 PF13144 SAF_2: SAF-like 52.2 23 0.0005 27.0 3.9 26 79-104 166-191 (196)
22 PRK06005 flgA flagellar basal 46.6 32 0.0007 26.1 3.8 28 78-105 126-153 (160)
23 PRK07018 flgA flagellar basal 44.9 33 0.00071 27.5 3.8 27 78-104 202-228 (235)
24 COG5510 Predicted small secret 41.7 29 0.00064 21.2 2.3 10 1-10 2-11 (44)
25 PRK06804 flgA flagellar basal 39.7 44 0.00095 27.6 3.8 28 78-105 228-255 (261)
26 PF08194 DIM: DIM protein; In 39.6 29 0.00063 20.3 2.0 6 1-6 1-6 (36)
27 PF03152 UFD1: Ubiquitin fusio 39.2 93 0.002 24.2 5.4 51 85-139 48-99 (176)
28 PF04202 Mfp-3: Foot protein 3 36.5 35 0.00076 22.8 2.3 24 1-25 1-24 (71)
29 PRK08515 flgA flagellar basal 36.0 54 0.0012 26.2 3.8 26 78-104 191-216 (222)
30 PRK12617 flgA flagellar basal 33.2 66 0.0014 25.7 3.9 26 79-104 182-207 (214)
31 COG2143 Thioredoxin-related pr 31.4 47 0.001 26.1 2.6 22 1-22 1-22 (182)
32 PRK12786 flgA flagellar basal 31.3 70 0.0015 27.3 3.9 28 78-105 284-311 (338)
33 PRK10053 hypothetical protein; 30.9 54 0.0012 24.4 2.8 13 1-13 1-13 (130)
34 PHA02909 hypothetical protein; 30.9 39 0.00085 22.0 1.8 18 1-18 35-52 (72)
35 PF02402 Lysis_col: Lysis prot 30.5 32 0.00069 21.2 1.2 21 1-21 1-21 (46)
36 PRK14758 hypothetical protein; 29.3 64 0.0014 17.6 2.2 13 5-17 9-21 (27)
37 PF07172 GRP: Glycine rich pro 28.7 54 0.0012 23.0 2.3 6 16-21 20-25 (95)
38 PF15240 Pro-rich: Proline-ric 28.4 38 0.00083 26.6 1.7 17 7-23 2-18 (179)
39 PRK13159 cytochrome c-type bio 27.8 51 0.0011 25.3 2.2 34 3-37 8-41 (155)
40 PRK10081 entericidin B membran 27.2 57 0.0012 20.3 2.0 12 1-12 2-13 (48)
41 PRK06911 rpsN 30S ribosomal pr 26.3 50 0.0011 23.4 1.8 39 96-136 54-100 (100)
42 PF15240 Pro-rich: Proline-ric 25.9 45 0.00098 26.2 1.7 19 4-22 3-21 (179)
43 PF11948 DUF3465: Protein of u 24.7 45 0.00098 25.0 1.4 17 1-17 1-17 (131)
44 PRK15346 outer membrane secret 24.5 63 0.0014 28.8 2.5 15 1-15 1-16 (499)
45 PRK13165 cytochrome c-type bio 24.5 55 0.0012 25.3 1.9 35 3-38 8-42 (160)
46 PRK15266 subtilase cytotoxin s 24.4 40 0.00087 25.2 1.1 31 1-31 1-31 (135)
47 TIGR01655 yxeA_fam conserved h 23.6 67 0.0015 23.0 2.1 38 92-139 64-101 (114)
48 PF11777 DUF3316: Protein of u 23.6 76 0.0016 22.5 2.4 14 1-14 1-14 (114)
49 PRK08061 rpsN 30S ribosomal pr 23.4 75 0.0016 20.7 2.1 36 99-136 18-61 (61)
50 PF05984 Cytomega_UL20A: Cytom 23.3 87 0.0019 22.0 2.5 28 1-28 1-28 (100)
51 COG3111 Periplasmic protein wi 23.2 83 0.0018 23.5 2.5 24 1-24 1-24 (128)
52 PRK09408 ompX outer membrane p 23.2 1.2E+02 0.0025 23.4 3.5 35 1-36 1-37 (171)
53 PRK10780 periplasmic chaperone 23.0 1.1E+02 0.0023 23.0 3.2 16 1-16 1-16 (165)
54 PRK15240 resistance to complem 22.7 1.4E+02 0.003 23.2 3.9 32 1-32 1-34 (185)
55 PF12071 DUF3551: Protein of u 21.7 1.4E+02 0.003 20.4 3.2 11 1-11 1-11 (82)
56 PF12276 DUF3617: Protein of u 21.2 79 0.0017 23.2 2.2 15 1-15 1-15 (162)
57 PRK13697 cytochrome c6; Provis 21.2 93 0.002 21.2 2.4 15 1-15 1-15 (111)
58 TIGR03327 AMP_phos AMP phospho 20.9 2.9E+02 0.0064 25.1 6.0 38 82-121 30-70 (500)
59 PF04377 ATE_C: Arginine-tRNA- 20.8 51 0.0011 24.3 1.0 21 24-44 60-80 (128)
60 COG2935 Putative arginyl-tRNA: 20.8 59 0.0013 26.9 1.5 20 26-45 174-193 (253)
61 COG5661 Predicted secreted Zn- 20.6 1.3E+02 0.0027 24.2 3.2 44 1-44 1-48 (210)
62 COG3019 Predicted metal-bindin 20.5 1.4E+02 0.003 22.8 3.3 35 1-37 1-35 (149)
63 PF07437 YfaZ: YfaZ precursor; 20.2 81 0.0018 24.5 2.1 15 126-140 130-144 (180)
64 TIGR00156 conserved hypothetic 20.0 1E+02 0.0022 22.8 2.5 13 1-13 1-13 (126)
No 1
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=100.00 E-value=2e-36 Score=218.60 Aligned_cols=118 Identities=71% Similarity=1.338 Sum_probs=93.6
Q ss_pred CCceeEEEEEeCCCCccccCCCCccccccCCCCCCceeccccccccccCCCCCCCCcCCCcEEEEEECCCCcEEEEEEEe
Q 032285 24 ASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVD 103 (143)
Q Consensus 24 ~~~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~~g~sv~v~VvD 103 (143)
+++|++|||||+|+.++|+|...+-+|+.++.++++.|+++|+|+|+..+.-|.+.+.||||++|||+.+|++++|+|||
T Consensus 2 a~nVraTYh~Y~p~~~nwdl~~~s~yCAtwda~kpl~wr~kYgWtAfCgp~g~~gq~~CGkClrVTNt~tga~~~~RIVD 81 (119)
T PF00967_consen 2 ASNVRATYHYYNPAQNNWDLNAVSAYCATWDADKPLAWRSKYGWTAFCGPAGPMGQDSCGKCLRVTNTATGAQVTVRIVD 81 (119)
T ss_dssp EEEEEEE-EESS-GGGTT-TTTT--TTHHHHTTS-CHHHHHS--EEC-STT---SGGGTT-EEEEE-TTT--EEEEEEEE
T ss_pred ccceeeeeeecCcccCCcccccceeeEeeecCCCCccccccCCeeEEecccCccCcccccceEEEEecCCCcEEEEEEEE
Confidence 46899999999999999999999999999999999999999999999987766788999999999999999999999999
Q ss_pred CCCCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEec
Q 032285 104 QCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 141 (143)
Q Consensus 104 ~C~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C 141 (143)
+|++++|||++.+|++|.++|++...|.+.|+|+||+|
T Consensus 82 qCsnGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 82 QCSNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC 119 (119)
T ss_dssp E-SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred cCCCCCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence 99999999999999999999999999999999999999
No 2
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.92 E-value=1.8e-24 Score=159.72 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=87.9
Q ss_pred CCchhHHHHHHHHHHHHHhhhccCCceeEEEEEeCCCCccccCCCCccccccCCCCCCceeccccccccccCCCCCCCCc
Q 032285 1 MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQA 80 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~~~~~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~ 80 (143)
|.+-+++++.+++.+.+++.+.. ++.|||++.. .|||+..+....+++ |++.++| ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-----G~AT~Y~~~~--------~gAC~~~~~~g~~ia-------Als~~lf-~~G~ 59 (125)
T PLN03024 1 MSKRILIFSTVLVFLFSVSYATP-----GIATFYTSYT--------PSACYRGTSFGVMIA-------AASDSLW-NNGR 59 (125)
T ss_pred CceeeHHHHHHHHHHhhhhcccc-----eEEEEeCCCC--------CccccCCCCCCCEeE-------EeCHHHc-CCCc
Confidence 55555566666656655554433 3466798742 489987766677777 9999999 8999
Q ss_pred CCCcEEEEEE---------CCCCcEEEEEEEeCCCC---CCCcCCHHHHHHHHhCCCCccccEEEEEEE
Q 032285 81 ACGRCLRVTN---------SGTGAQQIVRIVDQCAN---GGLDLDEGVFKKLDTNGIGYQQGFLTVSYE 137 (143)
Q Consensus 81 ~CGk~i~Vt~---------~~~g~sv~v~VvD~C~~---~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~ 137 (143)
.||+|++|++ ..+||+|+|+|+|+||. ++||||++||++|+ ....|+++|+|.
T Consensus 60 ~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA----~~~aG~v~V~y~ 124 (125)
T PLN03024 60 VCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIA----NPVAGIINIDYI 124 (125)
T ss_pred ccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhc----CccCCEEEEEEe
Confidence 9999999985 24689999999999973 59999999999999 678999999996
No 3
>PLN00193 expansin-A; Provisional
Probab=99.86 E-value=8e-21 Score=154.83 Aligned_cols=120 Identities=18% Similarity=0.317 Sum_probs=90.0
Q ss_pred HHHHHHHHhhhc-cCCceeEEEEEeCCCCccccCCCCccccccCCCCCC-ceeccccccccccCCCCCCCCcCCCcEEEE
Q 032285 11 SVCLLVAAASAQ-SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKP-LAWRQKYGWTAFCHSGGPIGQAACGRCLRV 88 (143)
Q Consensus 11 ~l~~~~~~~~a~-~~~~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~-~~v~~~~~~~Al~~~~~~~~~~~CGk~i~V 88 (143)
++|.+....++- ...+..++.|||..... .++.+||||+.+.... +-. ..+|++.++| +++..||+|++|
T Consensus 14 ~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~---~gt~gGACGYg~l~~~~~g~----~~AAls~~lf-~~G~~CGaCyev 85 (256)
T PLN00193 14 FCCYLFINVNAFTPSGWTKAHATFYGGSDA---SGTMGGACGYGNLYSTGYGT----RTAALSTALF-NDGASCGQCYRI 85 (256)
T ss_pred HHHHHHhhccCcCCCCceeeEEEEcCCCCC---CCCCCcccCCCCccccCCCc----eeeecCHhHc-cCCccccCeEEE
Confidence 444444444443 33577889999986432 2234799999864322 111 1358999999 899999999999
Q ss_pred EECC--------CCcEEEEEEEeCCCC----------------CCCcCCHHHHHHHHhCCCCccccEEEEEEEEEecC
Q 032285 89 TNSG--------TGAQQIVRIVDQCAN----------------GGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN 142 (143)
Q Consensus 89 t~~~--------~g~sv~v~VvD~C~~----------------~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C~ 142 (143)
++.. .|++|+|+|+|+||. .|||||+.||.+|+ .+..|+++|+|+.|+|+
T Consensus 86 ~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA----~~~~Giv~V~yrRVpC~ 159 (256)
T PLN00193 86 MCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIG----IYRGGIVPVLFQRVPCK 159 (256)
T ss_pred ECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHh----hhcCCeEeEEEEEeccc
Confidence 9731 467999999999964 59999999999998 57899999999999996
No 4
>PLN00050 expansin A; Provisional
Probab=99.85 E-value=6.3e-21 Score=154.81 Aligned_cols=130 Identities=17% Similarity=0.295 Sum_probs=92.0
Q ss_pred CCchhHHHHHHHHHHHHHhhhccCCceeEEEEEeCCCCccccCCCCccccccCCCCCCceeccccccccccCCCCCCCCc
Q 032285 1 MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQA 80 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~~~~~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~ 80 (143)
|+-+..-+++||. ++...+.....+..++.|||..... .++.+||||+.+...... ....+|++.++| +++.
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~W~~a~AT~Yg~~dg---~gt~gGACGYg~l~~~~~---g~~~AAls~~lf-~~G~ 72 (247)
T PLN00050 1 MECLGYTIVALLS-ILKIVEGYGSGWTGAHATFYGGGDA---SGTMGGACGYGNLYSQGY---GTNTAALSTALF-NNGL 72 (247)
T ss_pred CcchhhhHHHHhh-hheeccccCCCccccEEEEcCCCCC---CCCCCcccCCCCccccCC---CceeeeccHhHc-cCCc
Confidence 4445444444442 2222232233466777888975422 234579999987432110 012358999999 8999
Q ss_pred CCCcEEEEEECCC-----CcEEEEEEEeCCCC----------------CCCcCCHHHHHHHHhCCCCccccEEEEEEEEE
Q 032285 81 ACGRCLRVTNSGT-----GAQQIVRIVDQCAN----------------GGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFV 139 (143)
Q Consensus 81 ~CGk~i~Vt~~~~-----g~sv~v~VvD~C~~----------------~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v 139 (143)
.||+|++|+++.+ +++|+|+|+|+||. .|||||+.||.+|+ .+..|+++|+|+.|
T Consensus 73 ~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA----~~~aGii~V~yRRV 148 (247)
T PLN00050 73 SCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIA----QYKAGIVPVQYRRV 148 (247)
T ss_pred cccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHh----hhcCCeeeeEEEEe
Confidence 9999999998532 24899999999973 69999999999999 67889999999999
Q ss_pred ecC
Q 032285 140 NCN 142 (143)
Q Consensus 140 ~C~ 142 (143)
+|.
T Consensus 149 pC~ 151 (247)
T PLN00050 149 ACR 151 (247)
T ss_pred cCc
Confidence 996
No 5
>PLN03023 Expansin-like B1; Provisional
Probab=99.81 E-value=2.2e-19 Score=145.74 Aligned_cols=109 Identities=14% Similarity=0.239 Sum_probs=84.3
Q ss_pred ceeEEEEEeCCCCccccCCCCccccccCCCCCCceeccccccccccCCCCCCCCcCCCcEEEEEECC----CCcEEEEEE
Q 032285 26 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSG----TGAQQIVRI 101 (143)
Q Consensus 26 ~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~----~g~sv~v~V 101 (143)
+..++.|||.+.+. .++.+||||+.+...+..- ..-+|++ ++| +++..||+|++|++.. .+++|+|+|
T Consensus 25 W~~a~AT~Yg~~~g---~gt~gGACGYg~~~~~~~g---~~~aa~s-~Lf-~~G~~CGaCy~irC~~~~~C~~~~v~V~i 96 (247)
T PLN03023 25 FTYSRATYYGSPDC---LGTPTGACGFGEYGRTVNG---GNVAGVS-RLY-RNGTGCGACYQVRCKAPNLCSDDGVNVVV 96 (247)
T ss_pred cccceEEEeCCCCC---CCCCCccccCCccccCCCc---ceeeeeh-hhh-cCCchhcccEEeecCCCCccCCCCeEEEE
Confidence 67788889987643 3445799999875543211 1123666 899 8999999999999853 456899999
Q ss_pred EeCCC--CCCCcCCHHHHHHHHhCCCC---ccccEEEEEEEEEecC
Q 032285 102 VDQCA--NGGLDLDEGVFKKLDTNGIG---YQQGFLTVSYEFVNCN 142 (143)
Q Consensus 102 vD~C~--~~~LDLS~~aF~~l~~~g~~---~~~G~i~I~W~~v~C~ 142 (143)
+|.|+ ..|||||..||.+||..|+. +..|+++|+++.|+|.
T Consensus 97 Td~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~ 142 (247)
T PLN03023 97 TDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCR 142 (247)
T ss_pred EeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecc
Confidence 99994 67999999999999953322 5679999999999996
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.67 E-value=1.3e-16 Score=111.13 Aligned_cols=64 Identities=25% Similarity=0.490 Sum_probs=55.9
Q ss_pred ccccCCCCCCCCcCCCcEEEEEEC------CCCcEEEEEEEeCCCC----------------CCCcCCHHHHHHHHhCCC
Q 032285 68 TAFCHSGGPIGQAACGRCLRVTNS------GTGAQQIVRIVDQCAN----------------GGLDLDEGVFKKLDTNGI 125 (143)
Q Consensus 68 ~Al~~~~~~~~~~~CGk~i~Vt~~------~~g~sv~v~VvD~C~~----------------~~LDLS~~aF~~l~~~g~ 125 (143)
+|++.++| +++..||+|++|++. .++++|+|+|+|+||. +|||||+.||.+|+
T Consensus 2 aA~s~~lf-~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA---- 76 (87)
T smart00837 2 AALSTALF-NNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIA---- 76 (87)
T ss_pred cccCHHHc-cCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHh----
Confidence 38888999 899999999999963 1346999999999963 59999999999999
Q ss_pred CccccEEEEEE
Q 032285 126 GYQQGFLTVSY 136 (143)
Q Consensus 126 ~~~~G~i~I~W 136 (143)
....|+|+|+|
T Consensus 77 ~~~~Gvi~v~y 87 (87)
T smart00837 77 QYKAGIVPVKY 87 (87)
T ss_pred hhcCCEEeeEC
Confidence 67899999987
No 7
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.65 E-value=5.4e-17 Score=109.82 Aligned_cols=63 Identities=30% Similarity=0.474 Sum_probs=51.5
Q ss_pred cccCCCCCCCCcCCCcEEEEEE---CCC-----C--cEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEE
Q 032285 69 AFCHSGGPIGQAACGRCLRVTN---SGT-----G--AQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVS 135 (143)
Q Consensus 69 Al~~~~~~~~~~~CGk~i~Vt~---~~~-----g--~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~ 135 (143)
|.+...| +++..||+|+++++ ... . |+|+|+|+|+|| .++|||||+||++|+ ..+.|+++|+
T Consensus 3 a~~~~~y-~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la----~~~~G~i~V~ 77 (78)
T PF03330_consen 3 AGSATWY-DNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALA----DPDAGVIPVE 77 (78)
T ss_dssp EE-HHHH-GGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTB----STTCSSEEEE
T ss_pred EEEhhhc-CCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhC----CCCceEEEEE
Confidence 5566677 67899999999998 111 2 899999999996 789999999999998 6789999999
Q ss_pred E
Q 032285 136 Y 136 (143)
Q Consensus 136 W 136 (143)
|
T Consensus 78 w 78 (78)
T PF03330_consen 78 W 78 (78)
T ss_dssp E
T ss_pred C
Confidence 9
No 8
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=99.50 E-value=2e-13 Score=100.17 Aligned_cols=98 Identities=21% Similarity=0.385 Sum_probs=68.8
Q ss_pred eCCCCccccCCCCccccccCCCCCCceeccccccccccC-CCCC----------CCCcCCCcEEEEEECCCCcEEEEEEE
Q 032285 34 YHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCH-SGGP----------IGQAACGRCLRVTNSGTGAQQIVRIV 102 (143)
Q Consensus 34 y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~-~~~~----------~~~~~CGk~i~Vt~~~~g~sv~v~Vv 102 (143)
|++.+++-+...+..+|+...++.. .++ |..++. +.|| ++++.||+|+++++ +|++|.+..+
T Consensus 5 yd~~YD~~~~sl~~vaCSdg~nGL~----tk~-~~t~g~lp~Fp~IGg~~~V~gWnS~~CGtC~~lty--~g~si~vlaI 77 (119)
T PF07249_consen 5 YDTGYDDASRSLTTVACSDGPNGLI----TKG-YPTFGSLPNFPYIGGAPAVAGWNSPNCGTCWKLTY--NGRSIYVLAI 77 (119)
T ss_dssp E-CCGGSTT-BGGGSSSSSTTTSCC----CCH--SBCCCSTTTTSEEEETT--STT-TTTT-EEEEEE--TTEEEEEEEE
T ss_pred ecCCCCCCCCccceEEecCCCCccc----ccC-ccchhhcCCCCeeccccccccCCCCCCCCeEEEEE--CCeEEEEEEE
Confidence 4666666667777899999876642 233 333332 3444 57899999999998 7999999999
Q ss_pred eCCCCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEe
Q 032285 103 DQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVN 140 (143)
Q Consensus 103 D~C~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~ 140 (143)
|.- .+++++|++||++| ++|+....|+|+++|+.|+
T Consensus 78 D~a-~~gfnis~~A~n~L-T~g~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 78 DHA-GGGFNISLDAMNDL-TNGQAVELGRVDATYTQVD 113 (119)
T ss_dssp EE--SSSEEE-HHHHHHH-HTS-CCCC-EEE-EEEEE-
T ss_pred ecC-CCcccchHHHHHHh-cCCcccceeEEEEEEEEcC
Confidence 997 57899999999999 5778899999999999986
No 9
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=99.01 E-value=4e-09 Score=83.84 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=52.1
Q ss_pred CCcEEEEEECCCCcEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEecC
Q 032285 82 CGRCLRVTNSGTGAQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN 142 (143)
Q Consensus 82 CGk~i~Vt~~~~g~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C~ 142 (143)
.|..++|||..|||+|+|+|.|++| ..-||||++|+++|+ -...|+.+|+.+.+...
T Consensus 35 lgT~V~VtNl~ngrsviVrVnDRGPf~~gRiIDLS~aAA~~Lg----~~~~G~a~V~vevl~~~ 94 (208)
T TIGR00413 35 FNTYVKVTNLHNNRSVIVRINDRGPFSDDRIIDLSHAAAREIG----LISRGVGQVRIEVLHVA 94 (208)
T ss_pred CCCEEEEEECCCCCEEEEEEeCCCCCCCCCEEECCHHHHHHcC----CCcCceEEEEEEEEecC
Confidence 7999999999999999999999997 569999999999998 67899999999988643
No 10
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=98.96 E-value=2e-09 Score=84.03 Aligned_cols=71 Identities=28% Similarity=0.382 Sum_probs=58.9
Q ss_pred ccccccCCCC---CCCCcCCCcEEEEEECCCCcEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEEEEEE
Q 032285 66 GWTAFCHSGG---PIGQAACGRCLRVTNSGTGAQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFV 139 (143)
Q Consensus 66 ~~~Al~~~~~---~~~~~~CGk~i~Vt~~~~g~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v 139 (143)
..+|+|..+. +-..++-|..+||.++++ +.+|.|+|.-| .|+|||||.||.+|+ +..+|+|+|+|+.|
T Consensus 57 eITAlNPaqlNlGGipAAmAGaYLrVqGPKG--~TTVYVTDlYPegasGaLDLSpNAFakIG----nm~qGrIpvqWrvv 130 (232)
T COG4305 57 EITALNPAQLNLGGIPAAMAGAYLRVQGPKG--KTTVYVTDLYPEGASGALDLSPNAFAKIG----NMKQGRIPVQWRVV 130 (232)
T ss_pred eeeecCHHHcccCCchhhhccceEEEECCCC--ceEEEEecccccccccccccChHHHhhhc----chhcCccceeEEEe
Confidence 3468887654 113467999999999865 67889999996 689999999999998 78999999999999
Q ss_pred ecC
Q 032285 140 NCN 142 (143)
Q Consensus 140 ~C~ 142 (143)
+-|
T Consensus 131 ~aP 133 (232)
T COG4305 131 KAP 133 (232)
T ss_pred ccc
Confidence 865
No 11
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=1.4e-08 Score=81.97 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=51.6
Q ss_pred CCcEEEEEECCCCcEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEec
Q 032285 82 CGRCLRVTNSGTGAQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 141 (143)
Q Consensus 82 CGk~i~Vt~~~~g~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C 141 (143)
-|..++|||.+|||+|+|+|.|++| ..-||||.+|+++|+ -...|+.+|..+++.+
T Consensus 119 ~~t~v~VtNl~NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~----~~~~G~a~V~i~~l~~ 177 (233)
T COG0797 119 LPTYVRVTNLDNGRSVVVRINDRGPFVSGRIIDLSKAAADKLG----MIRSGVAKVRIEVLGV 177 (233)
T ss_pred CCCEEEEEEccCCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhC----CccCceEEEEEEEecc
Confidence 6899999999999999999999997 458999999999998 6789999999998875
No 12
>PRK10672 rare lipoprotein A; Provisional
Probab=98.48 E-value=1.8e-06 Score=73.75 Aligned_cols=53 Identities=25% Similarity=0.294 Sum_probs=44.4
Q ss_pred CCcEEEEEECCCCcEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEEEEE
Q 032285 82 CGRCLRVTNSGTGAQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEF 138 (143)
Q Consensus 82 CGk~i~Vt~~~~g~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~ 138 (143)
.|..++|||..|||+|+|+|.|++| ..-||||++|+++|+- ...++++|+.-.
T Consensus 115 lps~vrVtNl~ngrsvvVrVnDRGP~~~gRiiDLS~aAA~~Lg~----~~~~~V~ve~i~ 170 (361)
T PRK10672 115 IPSYVRVTNLANGRMIVVRINDRGPYGPGRVIDLSRAAADRLNT----SNNTKVRIDPII 170 (361)
T ss_pred CCCEEEEEECCCCcEEEEEEeCCCCCCCCCeeEcCHHHHHHhCC----CCCceEEEEEEe
Confidence 7999999999999999999999996 6699999999999972 334556655443
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=94.85 E-value=0.019 Score=45.78 Aligned_cols=57 Identities=26% Similarity=0.511 Sum_probs=36.7
Q ss_pred CCCcee--ccccccccccCCCCCCCCcCCCcEEEEEECC---CCcEEEEEEEeCC---CCCCCcCC
Q 032285 56 NKPLAW--RQKYGWTAFCHSGGPIGQAACGRCLRVTNSG---TGAQQIVRIVDQC---ANGGLDLD 113 (143)
Q Consensus 56 ~~~~~v--~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~---~g~sv~v~VvD~C---~~~~LDLS 113 (143)
.++..| ...|+|+|.+-... .....|++|++++.+. .||+.+|+|+..- +.++|||-
T Consensus 57 qqPwaVn~tlayGfaA~~~~G~-~e~~~Cc~Cy~LtFt~g~l~GKkmiVQ~tNtG~dlg~n~FDl~ 121 (201)
T PF02015_consen 57 QQPWAVNDTLAYGFAAASITGG-SESSWCCACYELTFTSGPLKGKKMIVQVTNTGGDLGSNQFDLA 121 (201)
T ss_dssp SS-EEEETTEEEEEEEEE-TT---HHHHTT-EEEEEE-SSTTTT-EEEEEEEEE-TTTTTTEEEEE
T ss_pred CCCeEecCcceeeeeeeeecCC-CCCCcccceEEEEEcCCCcCCCEeEEEecccCCCCCCCeEEEE
Confidence 455555 45678888773332 3457899999999753 5899999999987 36777775
No 14
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=66.13 E-value=10 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.6
Q ss_pred CcCCCcEEEEEECCCCcEEEEEEEeC
Q 032285 79 QAACGRCLRVTNSGTGAQQIVRIVDQ 104 (143)
Q Consensus 79 ~~~CGk~i~Vt~~~~g~sv~v~VvD~ 104 (143)
+..=|..|+|.|..+||.+.++|++.
T Consensus 92 ~g~~G~~I~V~N~~s~k~i~~~V~~~ 117 (122)
T TIGR03170 92 DGAVGDQIRVRNLSSGKIISGIVTGP 117 (122)
T ss_pred ccCCCCEEEEEECCCCCEEEEEEeCC
Confidence 44569999999999999999999875
No 15
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=65.79 E-value=3.8 Score=20.60 Aligned_cols=12 Identities=8% Similarity=0.288 Sum_probs=7.5
Q ss_pred CCchhHHHHHHH
Q 032285 1 MGRFGLCVILSV 12 (143)
Q Consensus 1 m~~~~~~~~~~l 12 (143)
|+|++|+.+.+|
T Consensus 1 MMk~vIIlvvLL 12 (19)
T PF13956_consen 1 MMKLVIILVVLL 12 (19)
T ss_pred CceehHHHHHHH
Confidence 788876644433
No 16
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=57.44 E-value=26 Score=31.64 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=32.9
Q ss_pred CCCcEEEEEECCCCcEEEEEEEeC-C--CCCCCcCCHHHHHHHH
Q 032285 81 ACGRCLRVTNSGTGAQQIVRIVDQ-C--ANGGLDLDEGVFKKLD 121 (143)
Q Consensus 81 ~CGk~i~Vt~~~~g~sv~v~VvD~-C--~~~~LDLS~~aF~~l~ 121 (143)
.=+.+|+|+. +++++++.|++. . .++.+-||..+|++|.
T Consensus 28 ~~~~rv~v~~--~~~~~~a~~~~~~~~~~~~~~gl~~~~~~~l~ 69 (493)
T TIGR02645 28 TPQDRVEVRI--GGKSLIAILVGSDTLVEMGEIGLSVSAVETFM 69 (493)
T ss_pred CcCCeEEEEe--CCEEEEEEEecccccccCCeeeccHHHHHHcC
Confidence 3478999985 688999988873 4 6899999999999996
No 17
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=54.53 E-value=21 Score=26.64 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.2
Q ss_pred CcCCCcEEEEEECCCCcEEEEEEEeCC
Q 032285 79 QAACGRCLRVTNSGTGAQQIVRIVDQC 105 (143)
Q Consensus 79 ~~~CGk~i~Vt~~~~g~sv~v~VvD~C 105 (143)
+..=|..|+|.|..+||.|.++|.+..
T Consensus 108 ~G~~Gd~IrV~N~~S~riV~g~V~~~g 134 (141)
T PRK12618 108 RGGVGDEIRVMNLSSRTTVSGRIAADG 134 (141)
T ss_pred cCCCCCEEEEEECCCCCEEEEEEecCC
Confidence 445699999999999999999999864
No 18
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=54.39 E-value=11 Score=23.26 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHHHHHHHhhhc
Q 032285 1 MGRFGLCVILSVCLLVAAASAQ 22 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~ 22 (143)
|++++++.++.|++.-+.+.+.
T Consensus 1 mkkll~~slltlam~~gislgd 22 (48)
T PF05968_consen 1 MKKLLIGSLLTLAMAWGISLGD 22 (48)
T ss_pred CchHHHhHHHHHHHHhhhhhhh
Confidence 8999999999998876655553
No 19
>PHA03370 virion protein US2; Provisional
Probab=54.38 E-value=15 Score=30.36 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.9
Q ss_pred EEEEEeCC---CCCCCcCCHHHHHHHH
Q 032285 98 IVRIVDQC---ANGGLDLDEGVFKKLD 121 (143)
Q Consensus 98 ~v~VvD~C---~~~~LDLS~~aF~~l~ 121 (143)
+|+.+|+| |..+.|.++.+|+-|.
T Consensus 8 IVTllD~~~aLPg~S~Da~~~LW~FL~ 34 (269)
T PHA03370 8 IVTLLDECDRLPGRSRDAASTLWIFLI 34 (269)
T ss_pred EEEeecccCCCCCCccccCHHHHHHHH
Confidence 58899999 7899999999999886
No 20
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=52.84 E-value=15 Score=24.83 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=18.4
Q ss_pred CCchhHHHHHHHHHHHHHhhhccC
Q 032285 1 MGRFGLCVILSVCLLVAAASAQSA 24 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~~~ 24 (143)
|+.|.+++++.+++-+.++.+...
T Consensus 1 MKhFaiLilavVaSAvVMAyPe~d 24 (78)
T PF11714_consen 1 MKHFAILILAVVASAVVMAYPERD 24 (78)
T ss_pred CchHHHHHHHHHHHHHHHhccccc
Confidence 889988888888777777776643
No 21
>PF13144 SAF_2: SAF-like
Probab=52.19 E-value=23 Score=27.04 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.5
Q ss_pred CcCCCcEEEEEECCCCcEEEEEEEeC
Q 032285 79 QAACGRCLRVTNSGTGAQQIVRIVDQ 104 (143)
Q Consensus 79 ~~~CGk~i~Vt~~~~g~sv~v~VvD~ 104 (143)
+..=|..|+|.|..+||.+.++|++.
T Consensus 166 ~G~~G~~I~V~N~~S~k~v~g~V~~~ 191 (196)
T PF13144_consen 166 DGALGDTIRVKNLSSGKIVQGRVIGP 191 (196)
T ss_pred CCCCCCEEEEEECCCCCEEEEEEecC
Confidence 44459999999998899999999875
No 22
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=46.63 E-value=32 Score=26.15 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.8
Q ss_pred CCcCCCcEEEEEECCCCcEEEEEEEeCC
Q 032285 78 GQAACGRCLRVTNSGTGAQQIVRIVDQC 105 (143)
Q Consensus 78 ~~~~CGk~i~Vt~~~~g~sv~v~VvD~C 105 (143)
.+..=|..|+|.|..+||.|.++|.+..
T Consensus 126 ~~G~~Gd~IrVrN~~Sgkiv~g~V~~~g 153 (160)
T PRK06005 126 QSGAAGDLIRVRNVDSGVIVSGTVLADG 153 (160)
T ss_pred ccCCCCCEEEEEECCCCCEEEEEEecCC
Confidence 3555799999999999999999998764
No 23
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=44.94 E-value=33 Score=27.48 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCcCCCcEEEEEECCCCcEEEEEEEeC
Q 032285 78 GQAACGRCLRVTNSGTGAQQIVRIVDQ 104 (143)
Q Consensus 78 ~~~~CGk~i~Vt~~~~g~sv~v~VvD~ 104 (143)
++..=|..|+|.|..+||.|.++|++.
T Consensus 202 ~~G~~Gd~IrVrN~~Sgk~i~g~V~~~ 228 (235)
T PRK07018 202 NDGAVGQQIRVRNMASGQVVSGIVTGD 228 (235)
T ss_pred CCCCCCCeEEEEECCCCCEEEEEEeCC
Confidence 344569999999999999999999875
No 24
>COG5510 Predicted small secreted protein [Function unknown]
Probab=41.73 E-value=29 Score=21.21 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=4.6
Q ss_pred CCchhHHHHH
Q 032285 1 MGRFGLCVIL 10 (143)
Q Consensus 1 m~~~~~~~~~ 10 (143)
|+|+++.+++
T Consensus 2 mk~t~l~i~~ 11 (44)
T COG5510 2 MKKTILLIAL 11 (44)
T ss_pred chHHHHHHHH
Confidence 5665433333
No 25
>PRK06804 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=39.71 E-value=44 Score=27.58 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCcCCCcEEEEEECCCCcEEEEEEEeCC
Q 032285 78 GQAACGRCLRVTNSGTGAQQIVRIVDQC 105 (143)
Q Consensus 78 ~~~~CGk~i~Vt~~~~g~sv~v~VvD~C 105 (143)
++..=|..|+|.|..+||.|.++|++.-
T Consensus 228 ~~G~~Gd~IrVrN~~SgkvV~a~V~~~g 255 (261)
T PRK06804 228 KNGRKGELIKVKNLSSGRVVTATVDGSG 255 (261)
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEecCC
Confidence 3445699999999889999999998753
No 26
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=39.64 E-value=29 Score=20.35 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=4.0
Q ss_pred CCchhH
Q 032285 1 MGRFGL 6 (143)
Q Consensus 1 m~~~~~ 6 (143)
|+.+.+
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 666666
No 27
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=39.21 E-value=93 Score=24.21 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=38.4
Q ss_pred EEEEEECCCCcEEEEEEEeCC-CCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEE
Q 032285 85 CLRVTNSGTGAQQIVRIVDQC-ANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFV 139 (143)
Q Consensus 85 ~i~Vt~~~~g~sv~v~VvD~C-~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v 139 (143)
-++|+|+.+++++.+=|.+.= +.|.+-|++-+|+.|. -.....+.|++.-+
T Consensus 48 ~F~i~n~~~~~~th~GVlEFsA~eG~i~lP~wmm~~L~----l~~g~~V~v~~~~L 99 (176)
T PF03152_consen 48 LFEISNPDNGKRTHCGVLEFSAEEGTIYLPPWMMQNLG----LQEGDIVRVEYVSL 99 (176)
T ss_dssp EEEEEETTTTEEEEEEEEEE--CTTEEEE-CHHHHHHT------TTEEEEEEEEE-
T ss_pred EEEEecCCCCcEEEEEEEEeEcCCCeEEeCccHHhhcC----CCCCCEEEEEEeEC
Confidence 789999888999999999997 6889999999999996 23334466776543
No 28
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=36.46 E-value=35 Score=22.77 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=15.4
Q ss_pred CCchhHHHHHHHHHHHHHhhhccCC
Q 032285 1 MGRFGLCVILSVCLLVAAASAQSAS 25 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~~~~ 25 (143)
|..|+|.+++.| .|....|-|+..
T Consensus 1 mnn~Si~VLlaL-vLIg~fAVqSda 24 (71)
T PF04202_consen 1 MNNLSIAVLLAL-VLIGSFAVQSDA 24 (71)
T ss_pred CCchhHHHHHHH-HHHhhheeeecC
Confidence 777887777666 445555666654
No 29
>PRK08515 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=35.96 E-value=54 Score=26.15 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=21.9
Q ss_pred CCcCCCcEEEEEECCCCcEEEEEEEeC
Q 032285 78 GQAACGRCLRVTNSGTGAQQIVRIVDQ 104 (143)
Q Consensus 78 ~~~~CGk~i~Vt~~~~g~sv~v~VvD~ 104 (143)
++..=|..|+|.| .+||.+.++|++.
T Consensus 191 ~~G~~Gd~IrVrN-~Sgkii~g~V~~~ 216 (222)
T PRK08515 191 QDGNLGDIIQAKN-KSNKILKAKVLSK 216 (222)
T ss_pred ccCCCCCEEEEEe-CCCCEEEEEEecC
Confidence 3445699999999 8999999999985
No 30
>PRK12617 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=33.22 E-value=66 Score=25.69 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=21.9
Q ss_pred CcCCCcEEEEEECCCCcEEEEEEEeC
Q 032285 79 QAACGRCLRVTNSGTGAQQIVRIVDQ 104 (143)
Q Consensus 79 ~~~CGk~i~Vt~~~~g~sv~v~VvD~ 104 (143)
+..=|..|+|.|...||.|.++|.+.
T Consensus 182 ~G~~Ge~IrVrN~~SgrvV~g~V~~~ 207 (214)
T PRK12617 182 DAGENERVSVENSSSRRVVQGIVEAS 207 (214)
T ss_pred CCCCCCEEEEEECCCCCEEEEEEeCC
Confidence 34459999999988999999999874
No 31
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.40 E-value=47 Score=26.06 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=16.2
Q ss_pred CCchhHHHHHHHHHHHHHhhhc
Q 032285 1 MGRFGLCVILSVCLLVAAASAQ 22 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~ 22 (143)
|+|++++++|++.++.++.+..
T Consensus 1 ~mRvl~i~Lliis~fl~a~~s~ 22 (182)
T COG2143 1 VMRVLLIVLLIISLFLSACKSN 22 (182)
T ss_pred CcchHHHHHHHHHHHHHHHhCC
Confidence 7899888888776666665544
No 32
>PRK12786 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=31.31 E-value=70 Score=27.32 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=23.9
Q ss_pred CCcCCCcEEEEEECCCCcEEEEEEEeCC
Q 032285 78 GQAACGRCLRVTNSGTGAQQIVRIVDQC 105 (143)
Q Consensus 78 ~~~~CGk~i~Vt~~~~g~sv~v~VvD~C 105 (143)
++..=|..|+|.|..+||.|.++|++.-
T Consensus 284 e~G~~Gd~IrV~N~~S~kiv~g~V~g~g 311 (338)
T PRK12786 284 EDGAEGDVVRVLNLQSKRTVTGTVTGRG 311 (338)
T ss_pred cccCCCCEEEEEECCCCCEEEEEEecCC
Confidence 3445699999999999999999999875
No 33
>PRK10053 hypothetical protein; Provisional
Probab=30.92 E-value=54 Score=24.41 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=8.4
Q ss_pred CCchhHHHHHHHH
Q 032285 1 MGRFGLCVILSVC 13 (143)
Q Consensus 1 m~~~~~~~~~~l~ 13 (143)
|+++++.++++++
T Consensus 1 MKK~~~~~~~~~~ 13 (130)
T PRK10053 1 MKLQAIALASFLV 13 (130)
T ss_pred CcHHHHHHHHHHH
Confidence 8887666655554
No 34
>PHA02909 hypothetical protein; Provisional
Probab=30.90 E-value=39 Score=22.01 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=11.2
Q ss_pred CCchhHHHHHHHHHHHHH
Q 032285 1 MGRFGLCVILSVCLLVAA 18 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~ 18 (143)
|-+|++++|++|..+...
T Consensus 35 mvsfilfviiflsmftil 52 (72)
T PHA02909 35 MVSFILFVIIFLSMFTIL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777766655544
No 35
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=30.51 E-value=32 Score=21.17 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=13.3
Q ss_pred CCchhHHHHHHHHHHHHHhhh
Q 032285 1 MGRFGLCVILSVCLLVAAASA 21 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a 21 (143)
|++.+++.|+++.++++..-+
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 777777777777655554443
No 36
>PRK14758 hypothetical protein; Provisional
Probab=29.30 E-value=64 Score=17.64 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHH
Q 032285 5 GLCVILSVCLLVA 17 (143)
Q Consensus 5 ~~~~~~~l~~~~~ 17 (143)
++.++++||++.+
T Consensus 9 liLivlIlCalia 21 (27)
T PRK14758 9 FILIILILCALIA 21 (27)
T ss_pred HHHHHHHHHHHHH
Confidence 4555566766643
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.70 E-value=54 Score=22.98 Aligned_cols=6 Identities=17% Similarity=0.208 Sum_probs=2.3
Q ss_pred HHHhhh
Q 032285 16 VAAASA 21 (143)
Q Consensus 16 ~~~~~a 21 (143)
.+.++|
T Consensus 20 sSevaa 25 (95)
T PF07172_consen 20 SSEVAA 25 (95)
T ss_pred Hhhhhh
Confidence 333333
No 38
>PF15240 Pro-rich: Proline-rich
Probab=28.37 E-value=38 Score=26.65 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhhcc
Q 032285 7 CVILSVCLLVAAASAQS 23 (143)
Q Consensus 7 ~~~~~l~~~~~~~~a~~ 23 (143)
++|||-++|+++..|+.
T Consensus 2 LlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQS 18 (179)
T ss_pred hhHHHHHHHHHhhhccc
Confidence 34444445555555653
No 39
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.82 E-value=51 Score=25.33 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHHHHhhhccCCceeEEEEEeCCC
Q 032285 3 RFGLCVILSVCLLVAAASAQSASNVRATYHLYHPE 37 (143)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~a~~~~~~~~t~t~y~~~ 37 (143)
|+.+++++++++..++...-.+..-...| ||+|.
T Consensus 8 Rl~~v~~~~~~~~~a~~Lv~~al~~n~~y-F~tps 41 (155)
T PRK13159 8 RLWLVIGVLTAAALAVTLIVLALQRNMSY-LFTPS 41 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCceE-EECHH
Confidence 55444444444443333333333334455 77775
No 40
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=27.21 E-value=57 Score=20.32 Aligned_cols=12 Identities=0% Similarity=-0.036 Sum_probs=5.5
Q ss_pred CCchhHHHHHHH
Q 032285 1 MGRFGLCVILSV 12 (143)
Q Consensus 1 m~~~~~~~~~~l 12 (143)
|+|.+..+++++
T Consensus 2 mKk~i~~i~~~l 13 (48)
T PRK10081 2 VKKTIAAIFSVL 13 (48)
T ss_pred hHHHHHHHHHHH
Confidence 455544444444
No 41
>PRK06911 rpsN 30S ribosomal protein S14; Reviewed
Probab=26.28 E-value=50 Score=23.41 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=30.7
Q ss_pred EEEEEEEeCC-----C---CCCCcCCHHHHHHHHhCCCCccccEEEEEE
Q 032285 96 QQIVRIVDQC-----A---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSY 136 (143)
Q Consensus 96 sv~v~VvD~C-----~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W 136 (143)
+-.+++..+| | ...+-||.-.|.+++.. +.-+|+..-+|
T Consensus 54 ss~~R~rNRC~~TGR~Rgv~r~FgLsRi~~Rela~~--G~lPGv~KaSW 100 (100)
T PRK06911 54 SNPVRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMV--GNIPGGRKSSW 100 (100)
T ss_pred cCcchhhcccCCCCCCcccccccCchHHHHHHHHHc--CCCCCeecccC
Confidence 3346677788 3 46899999999999866 56789988887
No 42
>PF15240 Pro-rich: Proline-rich
Probab=25.91 E-value=45 Score=26.23 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHhhhc
Q 032285 4 FGLCVILSVCLLVAAASAQ 22 (143)
Q Consensus 4 ~~~~~~~~l~~~~~~~~a~ 22 (143)
+||++++||||+.+=-+-+
T Consensus 3 lVLLSvALLALSSAQ~~dE 21 (179)
T PF15240_consen 3 LVLLSVALLALSSAQSTDE 21 (179)
T ss_pred hHHHHHHHHHhhhcccccc
Confidence 4566666665554443333
No 43
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=24.68 E-value=45 Score=24.97 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=12.5
Q ss_pred CCchhHHHHHHHHHHHH
Q 032285 1 MGRFGLCVILSVCLLVA 17 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~ 17 (143)
|+||+..++++|+++..
T Consensus 1 m~~~~~~~~~~~~~~~~ 17 (131)
T PF11948_consen 1 MKRFLALFLSVLSAFST 17 (131)
T ss_pred CcchHHHHHHHHHHhcc
Confidence 89998888777766433
No 44
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=24.54 E-value=63 Score=28.82 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=8.2
Q ss_pred CCchhHHHHH-HHHHH
Q 032285 1 MGRFGLCVIL-SVCLL 15 (143)
Q Consensus 1 m~~~~~~~~~-~l~~~ 15 (143)
|+|+.|.++| ||+..
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (499)
T PRK15346 1 MKKLLILIFLFLLNTA 16 (499)
T ss_pred CchhHHHHHHHHHhhh
Confidence 6666554444 55555
No 45
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=24.54 E-value=55 Score=25.25 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHhhhccCCceeEEEEEeCCCC
Q 032285 3 RFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQ 38 (143)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~a~~~~~~~~t~t~y~~~~ 38 (143)
|+.+++++++++..++...-.+..-...| ||+|..
T Consensus 8 Rl~~~~~~~~~~~~a~~L~l~al~~n~~y-F~tPse 42 (160)
T PRK13165 8 RLWLACAVLAGLALTIGLVLYALRSNIDL-FYTPGE 42 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCccE-EeCHHH
Confidence 45444444444433333333333333444 778853
No 46
>PRK15266 subtilase cytotoxin subunit B; Provisional
Probab=24.39 E-value=40 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=23.5
Q ss_pred CCchhHHHHHHHHHHHHHhhhccCCceeEEE
Q 032285 1 MGRFGLCVILSVCLLVAAASAQSASNVRATY 31 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~~~~~~~~t~ 31 (143)
|+|+..+.-++++..+-.+.|++..+.+-+|
T Consensus 1 ~k~~~~~~~~~~~~~~~~a~aewtgd~~~~y 31 (135)
T PRK15266 1 IKKFVPVYTLLILIYSFNASAEWTGDNTNAY 31 (135)
T ss_pred CcEeehhhhHHHhhhcCcchhhhcCCcccce
Confidence 7899887777777888888888776655544
No 47
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=23.62 E-value=67 Score=22.98 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=20.4
Q ss_pred CCCcEEEEEEEeCCCCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEE
Q 032285 92 GTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFV 139 (143)
Q Consensus 92 ~~g~sv~v~VvD~C~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v 139 (143)
.+|+.-.++.... =.|-+.+|=+|. ...|+.-.+|+.|
T Consensus 64 ~~G~~k~i~f~~~-----~~L~~~aylki~-----~~k~~~V~s~eeV 101 (114)
T TIGR01655 64 SSGKKHKVKFMAG-----TNLKSNAYLKIK-----YNKGKYVVQWKEV 101 (114)
T ss_pred CCCCEEEEEEEcC-----CCCCCCCEEEEE-----EeCCCcEeceEEE
Confidence 4566555555321 236666666664 2345555666665
No 48
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.60 E-value=76 Score=22.51 Aligned_cols=14 Identities=21% Similarity=0.081 Sum_probs=8.8
Q ss_pred CCchhHHHHHHHHH
Q 032285 1 MGRFGLCVILSVCL 14 (143)
Q Consensus 1 m~~~~~~~~~~l~~ 14 (143)
|++++++++++|.+
T Consensus 1 MKk~~ll~~~ll~s 14 (114)
T PF11777_consen 1 MKKIILLASLLLLS 14 (114)
T ss_pred CchHHHHHHHHHHH
Confidence 78877766555533
No 49
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=23.43 E-value=75 Score=20.66 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=27.4
Q ss_pred EEEEeCC-----C---CCCCcCCHHHHHHHHhCCCCccccEEEEEE
Q 032285 99 VRIVDQC-----A---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSY 136 (143)
Q Consensus 99 v~VvD~C-----~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W 136 (143)
+++..+| + ...+.||.-.|.+++.. +.-+|+..-+|
T Consensus 18 ~r~~nRC~~tGR~rgvir~fgl~R~~FRe~A~~--G~ipGv~KasW 61 (61)
T PRK08061 18 VRAYTRCERCGRPHSVYRKFGLCRICFRELAYK--GQIPGVKKASW 61 (61)
T ss_pred cccceeeecCCCCcceeccCCccHHHHHHHHHc--CcCCCeeeccC
Confidence 5666677 2 34677999999999966 56789888777
No 50
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=23.35 E-value=87 Score=21.96 Aligned_cols=28 Identities=29% Similarity=0.185 Sum_probs=13.9
Q ss_pred CCchhHHHHHHHHHHHHHhhhccCCcee
Q 032285 1 MGRFGLCVILSVCLLVAAASAQSASNVR 28 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~~~~~~~ 28 (143)
|.|-+.++.+|-..+..++||.+.+..|
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQKsKR 28 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQKSKR 28 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcccccccc
Confidence 5555444444333455555555555444
No 51
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=23.22 E-value=83 Score=23.47 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=17.4
Q ss_pred CCchhHHHHHHHHHHHHHhhhccC
Q 032285 1 MGRFGLCVILSVCLLVAAASAQSA 24 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~~~ 24 (143)
|+++.+.++..|++..+++..|++
T Consensus 1 mK~~~ia~~~~L~s~~alA~~qgg 24 (128)
T COG3111 1 MKKQAIAALIALVSTPALAADQGG 24 (128)
T ss_pred CchHHHHHHHHHhhhHHHhhhhcc
Confidence 788877777777776776666655
No 52
>PRK09408 ompX outer membrane protein X; Provisional
Probab=23.21 E-value=1.2e+02 Score=23.38 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=17.9
Q ss_pred CCchhHHHHH--HHHHHHHHhhhccCCceeEEEEEeCC
Q 032285 1 MGRFGLCVIL--SVCLLVAAASAQSASNVRATYHLYHP 36 (143)
Q Consensus 1 m~~~~~~~~~--~l~~~~~~~~a~~~~~~~~t~t~y~~ 36 (143)
|++.++.+++ ++++.... +++....++.-|-+=+.
T Consensus 1 mkk~~~~~~~~~~~~~~~~~-~~~~~~t~s~GYaq~~~ 37 (171)
T PRK09408 1 MKKIACLSALACVLAVTAGT-AVAATSTVTGGYAQSDA 37 (171)
T ss_pred CceEehHHHHHHHHHHhhhh-hhcccceEEEEEEEeec
Confidence 7887665555 33333332 44444566666644444
No 53
>PRK10780 periplasmic chaperone; Provisional
Probab=22.95 E-value=1.1e+02 Score=23.02 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=10.7
Q ss_pred CCchhHHHHHHHHHHH
Q 032285 1 MGRFGLCVILSVCLLV 16 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~ 16 (143)
|++|++.+++.|++.+
T Consensus 1 Mkk~~~~~~l~l~~~~ 16 (165)
T PRK10780 1 MKKWLLAAGLGLALAT 16 (165)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 8899877666554443
No 54
>PRK15240 resistance to complement killing; Provisional
Probab=22.68 E-value=1.4e+02 Score=23.18 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=16.7
Q ss_pred CCchhHHHHHHHHHHHH-Hhhhcc-CCceeEEEE
Q 032285 1 MGRFGLCVILSVCLLVA-AASAQS-ASNVRATYH 32 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~-~~~a~~-~~~~~~t~t 32 (143)
|++.++.++++++++.. ..++++ ...++.-|.
T Consensus 1 Mkk~~~~~~~~~~~~~~~~~~a~a~~~t~s~GYa 34 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLAAVPVAQADTHSVSVGYA 34 (185)
T ss_pred CchhHHHHHHHHHHHhcchhhhccCCCEEEEEEE
Confidence 88887766665545444 223322 244455554
No 55
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=21.71 E-value=1.4e+02 Score=20.41 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=7.1
Q ss_pred CCchhHHHHHH
Q 032285 1 MGRFGLCVILS 11 (143)
Q Consensus 1 m~~~~~~~~~~ 11 (143)
|.++++..+++
T Consensus 1 MR~~~~aa~a~ 11 (82)
T PF12071_consen 1 MRRLLLAALAL 11 (82)
T ss_pred ChhHHHHHHHH
Confidence 67776665554
No 56
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.24 E-value=79 Score=23.18 Aligned_cols=15 Identities=27% Similarity=0.087 Sum_probs=8.9
Q ss_pred CCchhHHHHHHHHHH
Q 032285 1 MGRFGLCVILSVCLL 15 (143)
Q Consensus 1 m~~~~~~~~~~l~~~ 15 (143)
|+|+.+.++++++++
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 777766665554443
No 57
>PRK13697 cytochrome c6; Provisional
Probab=21.22 E-value=93 Score=21.24 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=8.8
Q ss_pred CCchhHHHHHHHHHH
Q 032285 1 MGRFGLCVILSVCLL 15 (143)
Q Consensus 1 m~~~~~~~~~~l~~~ 15 (143)
|+|+...++++++++
T Consensus 1 m~~~~~~~~~~~~~~ 15 (111)
T PRK13697 1 MKKILSLVLLGLLLL 15 (111)
T ss_pred ChhHHHHHHHHHHHH
Confidence 888865555544343
No 58
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=20.90 E-value=2.9e+02 Score=25.11 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=29.5
Q ss_pred CCcEEEEEECCCCcEEEEEEE--eCC-CCCCCcCCHHHHHHHH
Q 032285 82 CGRCLRVTNSGTGAQQIVRIV--DQC-ANGGLDLDEGVFKKLD 121 (143)
Q Consensus 82 CGk~i~Vt~~~~g~sv~v~Vv--D~C-~~~~LDLS~~aF~~l~ 121 (143)
=+.+++|+. +++++++++. +.= .++.+-||..+|++|.
T Consensus 30 ~~~rv~v~~--~~~~~~a~~~~~~~~~~~g~~gls~~~~~~l~ 70 (500)
T TIGR03327 30 PGDRVRIES--GGKSVVGIVDSTDTLVEKGEIGLSHEVLEELG 70 (500)
T ss_pred CCCeEEEEe--CCEEEEEEEEcccccccCCeeeccHHHHHHcC
Confidence 367899975 6788877654 222 6899999999999996
No 59
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=20.83 E-value=51 Score=24.29 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=16.0
Q ss_pred CCceeEEEEEeCCCCccccCC
Q 032285 24 ASNVRATYHLYHPEQIGWDLT 44 (143)
Q Consensus 24 ~~~~~~t~t~y~~~~~~~~~~ 44 (143)
...+++-||||+|+....+++
T Consensus 60 ~~glSaVY~fyDPd~~~~SlG 80 (128)
T PF04377_consen 60 PDGLSAVYTFYDPDYSKRSLG 80 (128)
T ss_pred cchhhheeeeeCCCccccCcH
Confidence 345678899999997767764
No 60
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.81 E-value=59 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=16.8
Q ss_pred ceeEEEEEeCCCCccccCCC
Q 032285 26 NVRATYHLYHPEQIGWDLTA 45 (143)
Q Consensus 26 ~~~~t~t~y~~~~~~~~~~~ 45 (143)
+.++-|+||+|+...++|++
T Consensus 174 GlSsVY~FydPd~s~~SLGt 193 (253)
T COG2935 174 GLSSVYTFYDPDMSKRSLGT 193 (253)
T ss_pred cceeEEEEeCCChhhhcchH
Confidence 45788999999988888865
No 61
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.64 E-value=1.3e+02 Score=24.20 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCchhHHHHHHHHHHHHHh-hh--ccCCceeEEEEEeCCC-CccccCC
Q 032285 1 MGRFGLCVILSVCLLVAAA-SA--QSASNVRATYHLYHPE-QIGWDLT 44 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~-~a--~~~~~~~~t~t~y~~~-~~~~~~~ 44 (143)
|+++.+...+.|+.++..+ ++ .+..-++-+|.||.-+ -..|||+
T Consensus 1 m~~~~~~l~a~l~~~L~~~~a~~a~Ae~ivkk~ysYfSI~gkTaaDLd 48 (210)
T COG5661 1 MMYVKSALRAPLTALLGLLLAGPAEAETIVKKEYSYFSIGGKTAADLD 48 (210)
T ss_pred CchhHHHHHHHHHHHHHhccCCccccchhheeeeEEEEEcCccHHHHH
Confidence 5565444444333333222 22 3555567779999764 2335543
No 62
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=20.46 E-value=1.4e+02 Score=22.83 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=15.1
Q ss_pred CCchhHHHHHHHHHHHHHhhhccCCceeEEEEEeCCC
Q 032285 1 MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPE 37 (143)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~a~~~~~~~~t~t~y~~~ 37 (143)
|.|.-+..++..+.+.+...++++. ..+. .||+|.
T Consensus 1 Mrr~~~l~~l~a~~l~~~~~~~a~~-~~~~-vyksPn 35 (149)
T COG3019 1 MRRRAFLRSLAALGLGSTGPAQAQA-TEMV-VYKSPN 35 (149)
T ss_pred CchhHHHHHHHHHHhhcccchhcce-eeEE-EEeCCC
Confidence 6655333333333344444444432 1233 367775
No 63
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=20.22 E-value=81 Score=24.48 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=11.5
Q ss_pred CccccEEEEEEEEEe
Q 032285 126 GYQQGFLTVSYEFVN 140 (143)
Q Consensus 126 ~~~~G~i~I~W~~v~ 140 (143)
.+.+....++|++++
T Consensus 130 ~y~E~~a~~~~~v~~ 144 (180)
T PF07437_consen 130 NYQEANAGVRYTVIP 144 (180)
T ss_pred eEEEEeeeEEEEEec
Confidence 577788888888764
No 64
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=20.03 E-value=1e+02 Score=22.79 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=8.1
Q ss_pred CCchhHHHHHHHH
Q 032285 1 MGRFGLCVILSVC 13 (143)
Q Consensus 1 m~~~~~~~~~~l~ 13 (143)
|+++++.+++.|+
T Consensus 1 MKK~~~~~~~~l~ 13 (126)
T TIGR00156 1 MKFQAIVLASALV 13 (126)
T ss_pred CchHHHHHHHHHH
Confidence 7877666655443
Done!