Citrus Sinensis ID: 032287

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
MSFRGTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR
cccccccccccccccHHHHHHHHHHHHccccEEEEEEEEcccEEEEEEEcccccccHHHHHccccccccEEEEEEEEEEccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHc
ccHHHHHcccccEEcHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccccccHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccHcHHHHHHHHc
msfrgtnassgmgvadhskSTYLELQRKKVHRYVIFKIDEKKKEVVVEktggpaesyddftaslpdndcryavydfdfvtsencqkskIFFIAWSPDVSRIRAKMLYATSKDRFRRELDgihyeiqatdpsemdLEVIRDRAR
msfrgtnassgmgvadhsksTYLELQRKKVHRYVifkidekkkevvvektggpaesyddftaslpdndCRYAVYDFDFVTSENCQKSKIffiawspdvsrIRAKMLYAtskdrfrreldgihyeiqatdpsemdlEVIRDRAR
MSFRGTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDekkkevvvekTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR
*********************YLELQRKKVHRYVIFKIDEKKKEVVVEKTG***ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEI******************
*************VADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR
**************ADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR
**********GMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFRGTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query143 2.2.26 [Sep-21-2011]
Q8SAG3143 Actin-depolymerizing fact no no 0.993 0.993 0.894 3e-67
Q9ZSK2146 Actin-depolymerizing fact yes no 0.993 0.972 0.806 4e-65
Q2QLT8145 Actin-depolymerizing fact yes no 0.958 0.944 0.788 1e-61
Q9AY76145 Actin-depolymerizing fact no no 0.958 0.944 0.766 8e-59
Q9FVI2139 Actin-depolymerizing fact N/A no 0.958 0.985 0.664 6e-54
Q337A5151 Actin-depolymerizing fact no no 0.965 0.913 0.673 3e-53
Q39250139 Actin-depolymerizing fact no no 0.958 0.985 0.635 8e-53
Q9ZSK3139 Actin-depolymerizing fact no no 0.951 0.978 0.639 1e-52
Q6EUH7139 Actin-depolymerizing fact no no 0.958 0.985 0.635 5e-52
Q570Y6140 Actin-depolymerizing fact no no 0.944 0.964 0.644 6e-52
>sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1 Back     alignment and function desciption
 Score =  253 bits (646), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 127/142 (89%), Positives = 139/142 (97%)

Query: 1   MSFRGTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDF 60
           MSFRG NASSGMGVADHSK+T+LEL+RKKVHRYVIFKIDEKKKEVVVEKTGGPAES+D+F
Sbjct: 1   MSFRGLNASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEF 60

Query: 61  TASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDG 120
            A+LP+NDCRYAVYDFDFVTSENCQKSKIFFIAWSPD SRIRAKMLYATSK+RFRRELDG
Sbjct: 61  AAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDG 120

Query: 121 IHYEIQATDPSEMDLEVIRDRA 142
           +HYEIQATDP+EMDLEV+R+RA
Sbjct: 121 VHYEIQATDPTEMDLEVLRERA 142
Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers.
Vitis vinifera (taxid: 29760)
>sp|Q9ZSK2|ADF6_ARATH Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1 Back     alignment and function description
>sp|Q2QLT8|ADF11_ORYSJ Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1 Back     alignment and function description
>sp|Q9AY76|ADF2_ORYSJ Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|Q337A5|ADF10_ORYSJ Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1 Back     alignment and function description
>sp|Q39250|ADF1_ARATH Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZSK3|ADF4_ARATH Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2 Back     alignment and function description
>sp|Q6EUH7|ADF1_ORYSJ Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|Q570Y6|ADF8_ARATH Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query143
89276299143 actin depolymerizing factor 4 [Gossypium 0.993 0.993 0.901 5e-71
388493718146 unknown [Lotus japonicus] 0.993 0.972 0.855 2e-69
388492192146 unknown [Lotus japonicus] 0.993 0.972 0.855 2e-69
358248624146 uncharacterized protein LOC100819975 [Gl 0.993 0.972 0.848 4e-69
197312883143 actin depolymerizing factor [Rheum austr 0.993 0.993 0.845 5e-68
225433128143 PREDICTED: actin-depolymerizing factor [ 0.993 0.993 0.929 6e-68
356518048142 PREDICTED: actin-depolymerizing factor 6 0.951 0.957 0.889 6e-68
388513699146 unknown [Medicago truncatula] 0.993 0.972 0.841 8e-68
351723549146 uncharacterized protein LOC100527688 [Gl 0.993 0.972 0.834 1e-67
24745620145 actin depolymerizing factor 6 [Solanum t 0.993 0.979 0.847 1e-67
>gi|89276299|gb|ABD66506.1| actin depolymerizing factor 4 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  271 bits (694), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 128/142 (90%), Positives = 136/142 (95%)

Query: 1   MSFRGTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDF 60
           MSFRG NASSGMGVA+HSKSTYLELQRKKV RYVIFKIDEKKKEV+VEK GGP ESYDDF
Sbjct: 1   MSFRGGNASSGMGVAEHSKSTYLELQRKKVFRYVIFKIDEKKKEVIVEKIGGPTESYDDF 60

Query: 61  TASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDG 120
            ASLP++DCRYAVYDFDFVTSENCQKSKIFFIAWSP VSRIR+KMLYATSKDRFRREL+G
Sbjct: 61  AASLPESDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRSKMLYATSKDRFRRELEG 120

Query: 121 IHYEIQATDPSEMDLEVIRDRA 142
           IHYEIQATDP+EMDLEVIR+RA
Sbjct: 121 IHYEIQATDPTEMDLEVIRERA 142

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388493718|gb|AFK34925.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388492192|gb|AFK34162.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|358248624|ref|NP_001239657.1| uncharacterized protein LOC100819975 [Glycine max] gi|255638235|gb|ACU19431.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|197312883|gb|ACH63222.1| actin depolymerizing factor [Rheum australe] Back     alignment and taxonomy information
>gi|225433128|ref|XP_002285175.1| PREDICTED: actin-depolymerizing factor [Vitis vinifera] gi|296083652|emb|CBI23641.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356518048|ref|XP_003527696.1| PREDICTED: actin-depolymerizing factor 6-like [Glycine max] Back     alignment and taxonomy information
>gi|388513699|gb|AFK44911.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|351723549|ref|NP_001236003.1| uncharacterized protein LOC100527688 [Glycine max] gi|255632956|gb|ACU16832.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|24745620|dbj|BAC23034.1| actin depolymerizing factor 6 [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query143
TAIR|locus:2042546146 ADF6 "actin depolymerizing fac 0.993 0.972 0.744 4.3e-54
TAIR|locus:2127073140 ADF8 "actin depolymerizing fac 0.944 0.964 0.607 3.1e-44
TAIR|locus:2198175140 ADF11 "actin depolymerizing fa 0.944 0.964 0.607 1e-43
TAIR|locus:2131879137 ADF7 "actin depolymerizing fac 0.937 0.978 0.632 1.3e-43
TAIR|locus:2077122150 ADF1 "actin depolymerizing fac 0.972 0.926 0.575 1.7e-43
TAIR|locus:2168063139 ADF4 "actin depolymerizing fac 0.944 0.971 0.592 5.7e-43
TAIR|locus:2156727137 ADF10 "actin depolymerizing fa 0.937 0.978 0.625 4e-42
TAIR|locus:2059861143 ADF5 "actin depolymerizing fac 0.986 0.986 0.573 6.6e-42
TAIR|locus:2131556141 ADF9 "actin depolymerizing fac 0.951 0.964 0.566 5.9e-41
TAIR|locus:2077107137 ADF2 "actin depolymerizing fac 0.930 0.970 0.585 2.6e-40
TAIR|locus:2042546 ADF6 "actin depolymerizing factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 108/145 (74%), Positives = 118/145 (81%)

Query:     1 MSFRGT---NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESY 57
             MSFRG    NA SGMGVAD SK+T+LELQRKK HRYV+FKID          TG P ESY
Sbjct:     1 MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESY 60

Query:    58 DDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRE 117
             DDF ASLPDNDCRYAVYDFDFVTSENCQKSKIFF AWSP  S IRAK+LY+TSKD+  RE
Sbjct:    61 DDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRE 120

Query:   118 LDGIHYEIQATDPSEMDLEVIRDRA 142
             L GIHYEIQATDP+E+DLEV+R+RA
Sbjct:   121 LQGIHYEIQATDPTEVDLEVLRERA 145
GO:0003779 "actin binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2127073 ADF8 "actin depolymerizing factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198175 ADF11 "actin depolymerizing factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131879 ADF7 "actin depolymerizing factor 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077122 ADF1 "actin depolymerizing factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168063 ADF4 "actin depolymerizing factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156727 ADF10 "actin depolymerizing factor 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059861 ADF5 "actin depolymerizing factor 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131556 ADF9 "actin depolymerizing factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077107 ADF2 "actin depolymerizing factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CM06COFI_CRYNJNo assigned EC number0.41480.93000.9637yesno
Q41764ADF3_MAIZENo assigned EC number0.55790.96500.9928N/Ano
Q9FVI2ADF1_PETHYNo assigned EC number0.66420.95800.9856N/Ano
Q9FVI1ADF2_PETHYNo assigned EC number0.66420.95800.9580N/Ano
Q2QLT8ADF11_ORYSJNo assigned EC number0.78830.95800.9448yesno
P0DJ27COFB_DICDINo assigned EC number0.4160.86710.9051yesno
P46251ADF1_MAIZENo assigned EC number0.58820.95100.9784N/Ano
Q6C0Y0COFI_YARLINo assigned EC number0.45320.95800.8954yesno
Q9HF97COFI_ZYGRONo assigned EC number0.42850.91600.9160yesno
Q8SAG3ADF_VITVINo assigned EC number0.89430.99300.9930nono
Q03048COFI_YEASTNo assigned EC number0.40600.91600.9160yesno
Q9ZSK2ADF6_ARATHNo assigned EC number0.80680.99300.9726yesno
Q9AY76ADF2_ORYSJNo assigned EC number0.76640.95800.9448nono
Q759P0COFI_ASHGONo assigned EC number0.40600.91600.9160yesno
P30175ADF_LILLONo assigned EC number0.64700.95100.9784N/Ano
P30174ADF_BRANANo assigned EC number0.61410.86710.9841N/Ano
P45594CADF_DROMENo assigned EC number0.37060.93700.9054yesno
P0DJ26COFA_DICDINo assigned EC number0.4160.86710.9051yesno
P78929COFI_SCHPONo assigned EC number0.44360.91600.9562yesno
Q6BWX4COFI_DEBHANo assigned EC number0.42100.91600.9160yesno
Q43694ADF2_MAIZENo assigned EC number0.57350.95100.9784N/Ano
Q6CQ22COFI_KLULANo assigned EC number0.40600.91600.9160yesno
Q6FV81COFI_CANGANo assigned EC number0.43600.91600.9160yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_401646.1
annotation not avaliable (146 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query143
PLN03216141 PLN03216, PLN03216, actin depolymerizing factor; P 1e-71
cd11286133 cd11286, ADF_cofilin_like, Cofilin, Destrin, and r 1e-65
smart00102127 smart00102, ADF, Actin depolymerisation factor/cof 2e-54
pfam00241127 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type a 4e-50
cd0001397 cd00013, ADF_gelsolin, Actin depolymerization fact 2e-23
PTZ00152122 PTZ00152, PTZ00152, cofilin/actin-depolymerizing f 2e-16
cd11284132 cd11284, ADF_Twf-C_like, C-terminal ADF domain of 5e-13
cd11283122 cd11283, ADF_GMF-beta_like, ADF-homology domain of 2e-12
cd11285139 cd11285, ADF_Twf-N_like, N-terminal ADF domain of 5e-12
cd11281136 cd11281, ADF_drebrin_like, ADF homology domain of 0.002
>gnl|CDD|178755 PLN03216, PLN03216, actin depolymerizing factor; Provisional Back     alignment and domain information 
 Score =  210 bits (537), Expect = 1e-71
 Identities = 94/136 (69%), Positives = 117/136 (86%)

Query: 8   ASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDN 67
           A++GM V D  K++++E++ KKVHRY++FKIDEK ++V V+K GGP ESYDD  ASLP +
Sbjct: 6   ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTD 65

Query: 68  DCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 127
           DCRYAV+DFDFVT +NC+KSKIFFIAWSP+ SRIRAKMLYATSKD  RR LDG+HYE+QA
Sbjct: 66  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQA 125

Query: 128 TDPSEMDLEVIRDRAR 143
           TDP+EM  +VIRDRA+
Sbjct: 126 TDPTEMGFDVIRDRAK 141

Length = 141
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin depolymerizing factors Back     alignment and domain information
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding protein Back     alignment and domain information
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and gelsolin-like domains Back     alignment and domain information
>gnl|CDD|173441 PTZ00152, PTZ00152, cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|200440 cd11284, ADF_Twf-C_like, C-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|200439 cd11283, ADF_GMF-beta_like, ADF-homology domain of glia maturation factor beta and related proteins Back     alignment and domain information
>gnl|CDD|200441 cd11285, ADF_Twf-N_like, N-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|200437 cd11281, ADF_drebrin_like, ADF homology domain of drebrin and actin-binding protein 1 (abp1) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 143
PLN03216141 actin depolymerizing factor; Provisional 100.0
cd00013132 ADF Actin depolymerisation factor/cofilin -like do 100.0
KOG1735146 consensus Actin depolymerizing factor [Cytoskeleto 100.0
PF00241127 Cofilin_ADF: Cofilin/tropomyosin-type actin-bindin 100.0
smart00102127 ADF Actin depolymerisation factor/cofilin -like do 100.0
PTZ00152122 cofilin/actin-depolymerizing factor 1-like protein 100.0
KOG1736143 consensus Glia maturation factor beta [Extracellul 99.94
KOG1747 342 consensus Protein tyrosine kinase 9/actin monomer- 99.91
KOG1747342 consensus Protein tyrosine kinase 9/actin monomer- 99.9
KOG3655 484 consensus Drebrins and related actin binding prote 99.82
>PLN03216 actin depolymerizing factor; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.8e-48  Score=274.64  Aligned_cols=140  Identities=69%  Similarity=1.191  Sum_probs=133.0

Q ss_pred             CCCCCcccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeec
Q 032287            1 MSFRGTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVT   80 (143)
Q Consensus         1 ~~~~~~~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~   80 (143)
                      |.|.  ||+|||+++++|+++|++|+.++.+|||+|+|+.++++|+|++++..+.+|+||++.||+++|||++|||++.+
T Consensus         1 ~~~~--m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~   78 (141)
T PLN03216          1 MAFK--MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVT   78 (141)
T ss_pred             Ccce--ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEecc
Confidence            6676  88999999999999999999887789999999999889999887666678999999999999999999999999


Q ss_pred             CCCCceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032287           81 SENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA  142 (143)
Q Consensus        81 ~~~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~  142 (143)
                      ++|++++|++||+|||++|++|.||+|||+|++|++.|+|+++++||+|.+||+++.+.++|
T Consensus        79 ~~g~~~~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~  140 (141)
T PLN03216         79 VDNCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA  140 (141)
T ss_pred             CCCCcccCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999987

>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments Back     alignment and domain information
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton] Back     alignment and domain information
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma Back     alignment and domain information
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>KOG1736 consensus Glia maturation factor beta [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query143
1f7s_A139 Crystal Structure Of Adf1 From Arabidopsis Thaliana 2e-48
1ahq_A137 Recombinant Actophorin Length = 137 1e-27
1cnu_A137 Phosphorylated Actophorin From Acantamoeba Polyphag 3e-27
1cfy_A143 Yeast Cofilin, Monoclinic Crystal Form Length = 143 9e-24
2i2q_A137 Fission Yeast Cofilin Length = 137 5e-23
1ak6_A174 Destrin, Nmr, Minimized Average Structure Length = 1e-15
2l72_A139 Solution Structure And Dynamics Of Adf From Toxopla 2e-15
1q8g_A166 Nmr Structure Of Human Cofilin Length = 166 1e-14
1tvj_A166 Solution Structure Of Chick Cofilin Length = 166 1e-12
2xfa_A148 Crystal Structure Of Plasmodium Berghei Actin Depol 1e-12
2lj8_A144 Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA B 9e-12
2kvk_A144 Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISH 1e-08
1m4j_A142 Crystal Structure Of The N-Terminal Adf-H Domain Of 5e-08
2vac_A134 Structure Of N-Terminal Actin Depolymerizing Factor 5e-07
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana Length = 139 Back     alignment and structure 
Iteration: 1

 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 107/137 (78%)
Query: 6   TNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLP 65
            NA+SGM V D  K  +LEL+ K+ HR++++KI+           G P ++Y++F A LP
Sbjct: 2   ANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP 61
Query: 66  DNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEI 125
            ++CRYA+YDFDFVT+ENCQKSKIFFIAW PD++++R+KM+YA+SKDRF+RELDGI  E+
Sbjct: 62  ADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVEL 121
Query: 126 QATDPSEMDLEVIRDRA 142
           QATDP+EMDL+V R RA
Sbjct: 122 QATDPTEMDLDVFRSRA 138
>pdb|1AHQ|A Chain A, Recombinant Actophorin Length = 137 Back     alignment and structure
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga Length = 137 Back     alignment and structure
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form Length = 143 Back     alignment and structure
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin Length = 137 Back     alignment and structure
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure Length = 174 Back     alignment and structure
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma Gondii (Tgadf) Length = 139 Back     alignment and structure
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin Length = 166 Back     alignment and structure
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin Length = 166 Back     alignment and structure
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin Depolymerization Factor 2 Length = 148 Back     alignment and structure
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI Length = 144 Back     alignment and structure
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA DONOVANI Length = 144 Back     alignment and structure
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse Twinfilin Isoform-1 Length = 142 Back     alignment and structure
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor Homology (Adf-H) Domain Of Human Twinfilin-2 Length = 134 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query143
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 8e-53
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 4e-48
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 2e-45
2xfa_A148 Actin depolymerization factor 2; actin binding pro 4e-45
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 6e-45
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 4e-44
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 1e-40
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 2e-40
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 4e-39
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 9e-39
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 9e-38
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 5e-37
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 1e-36
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 2e-36
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 6e-36
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 6e-35
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 2e-34
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 2e-29
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 3e-27
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 2e-19
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Length = 139 Back     alignment and structure
 Score =  162 bits (412), Expect = 8e-53
 Identities = 87/136 (63%), Positives = 117/136 (86%)

Query: 7   NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPD 66
           NA+SGM V D  K  +LEL+ K+ HR++++KI+EK+K+VVVEK G P ++Y++F A LP 
Sbjct: 3   NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPA 62

Query: 67  NDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQ 126
           ++CRYA+YDFDFVT+ENCQKSKIFFIAW PD++++R+KM+YA+SKDRF+RELDGI  E+Q
Sbjct: 63  DECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQ 122

Query: 127 ATDPSEMDLEVIRDRA 142
           ATDP+EMDL+V R RA
Sbjct: 123 ATDPTEMDLDVFRSRA 138
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Length = 137 Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Length = 137 Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Length = 148 Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Length = 143 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Length = 174 Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Length = 124 Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Length = 166 Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Length = 139 Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Length = 134 Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Length = 154 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Length = 151 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Length = 164 Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Length = 142 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Length = 135 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Length = 166 Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Length = 141 Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Length = 141 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query143
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 100.0
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 100.0
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 100.0
2kvk_A144 Actin severing and dynamics regulatory protein; AD 100.0
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 100.0
2xfa_A148 Actin depolymerization factor 2; actin binding pro 100.0
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 100.0
2lj8_A144 Cofilin/actin depolymerizing factor, putative; pro 100.0
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 100.0
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 100.0
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 100.0
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 100.0
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 100.0
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 100.0
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 100.0
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 100.0
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 100.0
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 100.0
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 100.0
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 100.0
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 100.0
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 100.0
2ff3_A150 Gelsolin; protein-protein complex, structural prot 85.25
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Back     alignment and structure
Probab=100.00  E-value=1.1e-45  Score=260.50  Aligned_cols=137  Identities=64%  Similarity=1.163  Sum_probs=119.1

Q ss_pred             ccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCce
Q 032287            7 NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK   86 (143)
Q Consensus         7 ~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~   86 (143)
                      |++|||.++++|+++|++++.++.+|||+|+|++++++|+|+++|+...+|++|.+.||+++|||++||+++++++|+++
T Consensus         3 ~~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~   82 (139)
T 1f7s_A            3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQK   82 (139)
T ss_dssp             --CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEE
T ss_pred             cCccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccCcc
Confidence            78999999999999999999976799999999998889999998876668999999999999999999999999999999


Q ss_pred             ecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032287           87 SKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR  143 (143)
Q Consensus        87 ~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~  143 (143)
                      +|++||+|||++||+|.||+|||+|++|++.|+|++++|+|+|++||+++.|.++++
T Consensus        83 ~k~vfI~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~  139 (139)
T 1f7s_A           83 SKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN  139 (139)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred             cCEEEEEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999874
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Back     alignment and structure
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani} Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Back     alignment and structure
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Back     alignment and structure
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei} Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Back     alignment and structure
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 143
d1f7sa_124 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 4e-52
d1cnua_134 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 3e-48
d1ak7a_174 d.109.1.2 (A:) Destrin {Human and pig (Homo sapien 5e-44
d1cfya_133 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 2e-43
d1vkka_137 d.109.1.2 (A:) Glia maturation factor gamma, GMF-g 1e-39
d1q8ga_166 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 9e-39
d1m4ja_133 d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 1e-33
d1t3ya1130 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 ( 1e-30
d1hqz1_139 d.109.1.2 (1:) Cofilin-like domain of actin-bindin 2e-28
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

 Score =  159 bits (403), Expect = 4e-52
 Identities = 78/124 (62%), Positives = 107/124 (86%)

Query: 9   SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDND 68
           +SGM V D  K  +LEL+ K+ HR++++KI+EK+K+VVVEK G P ++Y++F A LP ++
Sbjct: 1   ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADE 60

Query: 69  CRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQAT 128
           CRYA+YDFDFVT+ENCQKSKIFFIAW PD++++R+KM+YA+SKDRF+RELDGI  E+QAT
Sbjct: 61  CRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQAT 120

Query: 129 DPSE 132
           DP+E
Sbjct: 121 DPTE 124
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Length = 134 Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 133 Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133 Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query143
d1f7sa_124 Cofilin (actin depolymerizing factor, ADF) {Plant 100.0
d1cnua_134 Cofilin (actin depolymerizing factor, ADF) {Acanth 100.0
d1cfya_133 Cofilin (actin depolymerizing factor, ADF) {Baker' 100.0
d1ak7a_174 Destrin {Human and pig (Homo sapiens) and (Sus scr 100.0
d1vkka_137 Glia maturation factor gamma, GMF-gamma {Mouse (Mu 100.0
d1q8ga_166 Cofilin (actin depolymerizing factor, ADF) {Human 100.0
d1m4ja_133 Adf-H domain of twinfilin isoform-1 {Mouse (Mus mu 100.0
d1t3ya1130 Coactosin-like protein Cotl1 (Clp) {Human (Homo sa 100.0
d1hqz1_139 Cofilin-like domain of actin-binding protein abp1p 100.0
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

Probab=100.00  E-value=2.1e-43  Score=242.82  Aligned_cols=124  Identities=63%  Similarity=1.180  Sum_probs=119.2

Q ss_pred             ccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceec
Q 032287            9 SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSK   88 (143)
Q Consensus         9 ~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k   88 (143)
                      +|||+++|+|+++|++|+.++.+|||+|+|+.++++|+|+++++...+|++|++.||+++|||++|+|.+.+++|+.++|
T Consensus         1 aSGi~v~de~~~~f~~lk~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~~ry~~~~~~~~~~~~~~~~k   80 (124)
T d1f7sa_           1 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSK   80 (124)
T ss_dssp             CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEEEE
T ss_pred             CCCeEeCHHHHHHHHHHhcCCCceEEEEEEeCCCcEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEEEEecCCCCcccc
Confidence            58999999999999999998889999999999999999999887778999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCC
Q 032287           89 IFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSE  132 (143)
Q Consensus        89 ~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~d  132 (143)
                      ++||+|||++||+|.||+|||+|++|++.|+|+++++||+|++|
T Consensus        81 ~vfI~w~Pd~a~vk~KMlyAssk~~l~~~l~gi~~~i~a~d~~E  124 (124)
T d1f7sa_          81 IFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE  124 (124)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC
T ss_pred             EEEEEECCCCCCHhHeeeeHhHHHHHHHHhcCccEEEEeCCCCC
Confidence            99999999999999999999999999999999999999999986
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure