BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032288
(143 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224136924|ref|XP_002322450.1| predicted protein [Populus trichocarpa]
gi|222869446|gb|EEF06577.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 251 bits (641), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 127/143 (88%), Positives = 134/143 (93%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD++YND+DMGYEDEP EPEIEEGA+EDAEN NN+D GEPIETE+KEEQ E RKT
Sbjct: 1 MADDEYNDVDMGYEDEPAEPEIEEGADEDAENNNNEDDTGEPIETEDKEEQAPVERPRKT 60
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61 SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
Query: 121 SYEDWGVDELIVEDSWKRQVGGD 143
SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGD 143
>gi|297792515|ref|XP_002864142.1| hypothetical protein ARALYDRAFT_495261 [Arabidopsis lyrata subsp.
lyrata]
gi|297309977|gb|EFH40401.1| hypothetical protein ARALYDRAFT_495261 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/144 (84%), Positives = 132/144 (91%), Gaps = 1/144 (0%)
Query: 1 MADEDYNDLD-MGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARK 59
MADEDYN++D +GYEDEP EPEIEEG EEDAE NDD+NGEP+ETE+K E E + RK
Sbjct: 1 MADEDYNEVDDLGYEDEPVEPEIEEGVEEDAEMKENDDVNGEPLETEDKVETEPVQRPRK 60
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120
Query: 120 GSYEDWGVDELIVEDSWKRQVGGD 143
GS+E+WGVDELIVEDSWKRQVGGD
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGGD 144
>gi|15242235|ref|NP_200007.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
gi|13878077|gb|AAK44116.1|AF370301_1 putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|10177729|dbj|BAB11042.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis
thaliana]
gi|17104747|gb|AAL34262.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|21595784|gb|AAM66131.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis
thaliana]
gi|332008765|gb|AED96148.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
Length = 144
Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/144 (84%), Positives = 130/144 (90%), Gaps = 1/144 (0%)
Query: 1 MADEDYNDLD-MGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARK 59
MADEDYND+D +GYEDEP EPEIEEG EED E NDD+NGEPIE E+K E E + RK
Sbjct: 1 MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120
Query: 120 GSYEDWGVDELIVEDSWKRQVGGD 143
GS+E+WGVDELIVEDSWKRQVGGD
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGGD 144
>gi|297835766|ref|XP_002885765.1| hypothetical protein ARALYDRAFT_899271 [Arabidopsis lyrata subsp.
lyrata]
gi|297331605|gb|EFH62024.1| hypothetical protein ARALYDRAFT_899271 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/144 (83%), Positives = 132/144 (91%), Gaps = 1/144 (0%)
Query: 1 MADEDYNDLD-MGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARK 59
MADEDYN++D +GYEDEP EPEIEEG EEDA+ NDD+NGEP+ETE+K E E + RK
Sbjct: 1 MADEDYNEVDDLGYEDEPVEPEIEEGVEEDADIKENDDVNGEPMETEDKVETEPVQRPRK 60
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120
Query: 120 GSYEDWGVDELIVEDSWKRQVGGD 143
GS+E+WGVDELIVEDSWKRQVGGD
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGGD 144
>gi|356535896|ref|XP_003536478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Glycine max]
Length = 142
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 126/143 (88%), Positives = 134/143 (93%), Gaps = 1/143 (0%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD+DY D+DMGYEDEPPEPEIEEGAEED EN ND++ GEPI+TE+KEE++ E RKT
Sbjct: 1 MADDDYEDIDMGYEDEPPEPEIEEGAEEDLEN-KNDELTGEPIDTEDKEEEQPVERPRKT 59
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 60 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 119
Query: 121 SYEDWGVDELIVEDSWKRQVGGD 143
SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGGD 142
>gi|351724737|ref|NP_001236044.1| uncharacterized protein LOC100305739 [Glycine max]
gi|255626491|gb|ACU13590.1| unknown [Glycine max]
Length = 142
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 126/143 (88%), Positives = 133/143 (93%), Gaps = 1/143 (0%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MADEDY D+DMGYEDEPPEPEIEEGAEED EN ND+I GE I+TE+KEE++ + RKT
Sbjct: 1 MADEDYEDIDMGYEDEPPEPEIEEGAEEDVEN-KNDEITGESIDTEDKEEEQPVKRPRKT 59
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 60 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 119
Query: 121 SYEDWGVDELIVEDSWKRQVGGD 143
SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGGD 142
>gi|224120092|ref|XP_002318240.1| predicted protein [Populus trichocarpa]
gi|222858913|gb|EEE96460.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 130/143 (90%), Positives = 135/143 (94%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MADEDYND+DMGYEDEPPEPEIEEG EEDA+N NN+D GEPIETE+KEEQE E RKT
Sbjct: 1 MADEDYNDVDMGYEDEPPEPEIEEGVEEDADNDNNEDDKGEPIETEDKEEQEPVERPRKT 60
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61 SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
Query: 121 SYEDWGVDELIVEDSWKRQVGGD 143
SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGD 143
>gi|15224039|ref|NP_178540.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
gi|4544434|gb|AAD22343.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|33589774|gb|AAQ22653.1| At2g04630 [Arabidopsis thaliana]
gi|110738832|dbj|BAF01339.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|330250757|gb|AEC05851.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
Length = 144
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/144 (81%), Positives = 130/144 (90%), Gaps = 1/144 (0%)
Query: 1 MADEDYNDLD-MGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARK 59
MAD+DYN++D +GYEDEP EPEIEEG EEDA+ NDD+N +P+ETE+K E E + RK
Sbjct: 1 MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120
Query: 120 GSYEDWGVDELIVEDSWKRQVGGD 143
SYE+WGVDELIVEDSWKRQVGGD
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGGD 144
>gi|326495054|dbj|BAJ85623.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/143 (79%), Positives = 126/143 (88%), Gaps = 3/143 (2%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEA-ARK 59
MAD+DYN++DMGYEDEPPE +IEEG EED EN N+D + + E +E++++K A R
Sbjct: 1 MADDDYNEVDMGYEDEPPEADIEEGVEEDPEN--NEDAPDDVVGGEGEEKEQEKTARPRN 58
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T+KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPD
Sbjct: 59 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 118
Query: 120 GSYEDWGVDELIVEDSWKRQVGG 142
GSYEDWGVDELIVEDSWKRQVGG
Sbjct: 119 GSYEDWGVDELIVEDSWKRQVGG 141
>gi|449437154|ref|XP_004136357.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
Length = 142
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/142 (86%), Positives = 131/142 (92%), Gaps = 1/142 (0%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD+DYNDLDMGYEDEPPEPEIEEGAEE+ + N DD+ GEP+E E KE++E E RKT
Sbjct: 1 MADDDYNDLDMGYEDEPPEPEIEEGAEEELDT-NTDDVPGEPVEAEGKEDEEPVERVRKT 59
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 60 SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 119
Query: 121 SYEDWGVDELIVEDSWKRQVGG 142
SYEDWGVDELIVEDSWKRQVGG
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGG 141
>gi|225446748|ref|XP_002282723.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Vitis vinifera]
gi|302143496|emb|CBI22057.3| unnamed protein product [Vitis vinifera]
Length = 141
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/143 (88%), Positives = 133/143 (93%), Gaps = 2/143 (1%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD+DYND+DMGYEDEPPEPEIEEGAEEDA+N NN+DI + IET EKE Q E +RKT
Sbjct: 1 MADDDYNDMDMGYEDEPPEPEIEEGAEEDADNNNNEDI-PDAIETAEKE-QVPVERSRKT 58
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 59 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 118
Query: 121 SYEDWGVDELIVEDSWKRQVGGD 143
SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 119 SYEDWGVDELIVEDSWKRQVGGD 141
>gi|357149556|ref|XP_003575153.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Brachypodium distachyon]
Length = 142
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 121/142 (85%), Gaps = 1/142 (0%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD+DYN++DMGYEDEP EP+IEEG EED EN N D E++EQE+ R T
Sbjct: 1 MADDDYNEVDMGYEDEPAEPDIEEGVEEDPEN-NEDAPEDVVGGEGEEKEQEKTPRPRNT 59
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 60 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 119
Query: 121 SYEDWGVDELIVEDSWKRQVGG 142
SYEDWGVDELIVEDSWKRQVGG
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGG 141
>gi|357121247|ref|XP_003562332.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Brachypodium distachyon]
Length = 142
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 121/142 (85%), Gaps = 1/142 (0%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD+DYN++DMGYEDEPPE +IEEG EED EN N D E++EQE+ R T
Sbjct: 1 MADDDYNEVDMGYEDEPPEADIEEGVEEDPEN-NEDAPEDVVGGEGEEKEQEKTPRPRNT 59
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 60 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 119
Query: 121 SYEDWGVDELIVEDSWKRQVGG 142
SYEDWGVDELIVEDSWKRQVGG
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGG 141
>gi|357509805|ref|XP_003625191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Medicago truncatula]
gi|124360124|gb|ABN08140.1| DNA-directed RNA polymerase, 14 to 18 kDa subunit [Medicago
truncatula]
gi|355500206|gb|AES81409.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Medicago truncatula]
gi|388508874|gb|AFK42503.1| unknown [Medicago truncatula]
gi|388517849|gb|AFK46986.1| unknown [Medicago truncatula]
Length = 145
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/145 (84%), Positives = 132/145 (91%), Gaps = 2/145 (1%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDIN--GEPIETEEKEEQEQKEAAR 58
MAD+DY D+DMGYE+EPPEPEIEEGAEE+ + NDD++ GEPIETEEKE+ E R
Sbjct: 1 MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDNKNDDLDAEGEPIETEEKEDAAPVERPR 60
Query: 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 118
+TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP
Sbjct: 61 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 120
Query: 119 DGSYEDWGVDELIVEDSWKRQVGGD 143
DGSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 121 DGSYEDWGVDELIVEDSWKRQVGGD 145
>gi|217071630|gb|ACJ84175.1| unknown [Medicago truncatula]
Length = 145
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/145 (84%), Positives = 131/145 (90%), Gaps = 2/145 (1%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDIN--GEPIETEEKEEQEQKEAAR 58
MAD+DY D+DMGYE+EPPEPEIEEGAEE+ + NDD++ GEPIETEEKE+ E R
Sbjct: 1 MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDNKNDDLDAEGEPIETEEKEDVAPVERPR 60
Query: 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 118
+TSKYMTKYERARI GTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP
Sbjct: 61 RTSKYMTKYERARIFGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 120
Query: 119 DGSYEDWGVDELIVEDSWKRQVGGD 143
DGSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 121 DGSYEDWGVDELIVEDSWKRQVGGD 145
>gi|147794797|emb|CAN62586.1| hypothetical protein VITISV_000776 [Vitis vinifera]
Length = 140
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/122 (86%), Positives = 111/122 (90%), Gaps = 2/122 (1%)
Query: 22 IEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQIS 81
+EGAEEDA+N NN+DI + IET EKE Q E +RKTSKYMTKYERARILGTRALQIS
Sbjct: 21 FDEGAEEDADNNNNEDI-PDAIETAEKE-QVPVERSRKTSKYMTKYERARILGTRALQIS 78
Query: 82 MNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVG 141
MNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVG
Sbjct: 79 MNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVG 138
Query: 142 GD 143
GD
Sbjct: 139 GD 140
>gi|4960150|gb|AAD34613.1|AF153277_1 DNA-directed RNA polymerase IIa [Nicotiana tabacum]
gi|4960152|gb|AAD34614.1|AF153278_1 DNA-directed RNA polymerase IIb [Nicotiana tabacum]
Length = 143
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/130 (83%), Positives = 115/130 (88%), Gaps = 3/130 (2%)
Query: 15 DEPPEPEIEEGAEEDAENINNDDINGEPI--ETEEKEEQEQKEAARKTSKYMTKYERARI 72
DEP EPE +EGAE + +N NN+DI +P+ E EEK EQE E RKTSKYMTKYERARI
Sbjct: 14 DEPIEPEPDEGAEIEEDNGNNEDIP-DPLLGEGEEKTEQEPVERPRKTSKYMTKYERARI 72
Query: 73 LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV
Sbjct: 73 LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
Query: 133 EDSWKRQVGG 142
EDSWKRQVGG
Sbjct: 133 EDSWKRQVGG 142
>gi|242043886|ref|XP_002459814.1| hypothetical protein SORBIDRAFT_02g011150 [Sorghum bicolor]
gi|241923191|gb|EER96335.1| hypothetical protein SORBIDRAFT_02g011150 [Sorghum bicolor]
Length = 143
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/145 (82%), Positives = 127/145 (87%), Gaps = 6/145 (4%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINND---DINGEPIETEEKEEQEQKEAA 57
MAD+DYN++DMGYEDEPPE EIEEGAEE+ EN N D D+ G E E+KE QE+ A
Sbjct: 1 MADDDYNEMDMGYEDEPPEAEIEEGAEEELENNNEDTPDDVVG--AEAEDKE-QEKIARA 57
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT+KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYL
Sbjct: 58 RKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 117
Query: 118 PDGSYEDWGVDELIVEDSWKRQVGG 142
PDGSYEDW VDELIVEDSWKRQVGG
Sbjct: 118 PDGSYEDWSVDELIVEDSWKRQVGG 142
>gi|255539539|ref|XP_002510834.1| DNA-directed RNA polymerase subunit rpb6, putative [Ricinus
communis]
gi|223549949|gb|EEF51436.1| DNA-directed RNA polymerase subunit rpb6, putative [Ricinus
communis]
Length = 124
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/121 (90%), Positives = 114/121 (94%)
Query: 23 EEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISM 82
+EGAEED EN NN+D+ G+PIETE+KEEQE E RKTSKYMTKYERARILGTRALQISM
Sbjct: 4 QEGAEEDVENNNNEDVPGDPIETEDKEEQEAAERPRKTSKYMTKYERARILGTRALQISM 63
Query: 83 NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 142
NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 64 NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 123
Query: 143 D 143
D
Sbjct: 124 D 124
>gi|226507150|ref|NP_001149930.1| LOC100283558 [Zea mays]
gi|195635557|gb|ACG37247.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
Length = 142
Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 117/146 (80%), Positives = 127/146 (86%), Gaps = 7/146 (4%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAE---NINNDDINGEPIETEEKEEQEQKEAA 57
MAD+DYN++DMGYEDE PEPEIEEGAEE+ E + +D I GE E +EQE+ +
Sbjct: 1 MADDDYNEIDMGYEDELPEPEIEEGAEEELENNEDAPDDVIGGEG----EDKEQEKTKRE 56
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT+KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYL
Sbjct: 57 RKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 116
Query: 118 PDGSYEDWGVDELIVEDSWKRQVGGD 143
PDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 117 PDGSYEDWGVDELIVEDSWKRQVGGD 142
>gi|449446057|ref|XP_004140788.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
gi|449485538|ref|XP_004157202.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
Length = 143
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/142 (90%), Positives = 134/142 (94%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD+DYNDLDMGYEDEPPEPEIEEGAEE+ EN NNDDI GEP+E EEKE++E ARKT
Sbjct: 1 MADDDYNDLDMGYEDEPPEPEIEEGAEEELENNNNDDIPGEPVEAEEKEDEEPIVRARKT 60
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61 SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
Query: 121 SYEDWGVDELIVEDSWKRQVGG 142
SYEDWGVDELIVEDSWKRQVGG
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGG 142
>gi|225455445|ref|XP_002279544.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 1 [Vitis vinifera]
gi|297741100|emb|CBI31831.3| unnamed protein product [Vitis vinifera]
Length = 142
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 124/143 (86%), Positives = 132/143 (92%), Gaps = 1/143 (0%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MADE+YND+DMGYEDEPPEPEIEEGAEE+AEN NN+D+ + +E +EKE E E RKT
Sbjct: 1 MADEEYNDVDMGYEDEPPEPEIEEGAEEEAENNNNEDVP-DALEEQEKEVHETVERPRKT 59
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 60 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 119
Query: 121 SYEDWGVDELIVEDSWKRQVGGD 143
SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGGD 142
>gi|115471967|ref|NP_001059582.1| Os07g0463100 [Oryza sativa Japonica Group]
gi|22093730|dbj|BAC07023.1| putative DNA-directed RNA polymerase Iia [Oryza sativa Japonica
Group]
gi|113611118|dbj|BAF21496.1| Os07g0463100 [Oryza sativa Japonica Group]
gi|125558240|gb|EAZ03776.1| hypothetical protein OsI_25904 [Oryza sativa Indica Group]
gi|215768441|dbj|BAH00670.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/142 (82%), Positives = 128/142 (90%), Gaps = 1/142 (0%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MA++DYND+DMGYEDEPPEPEIEEGAEE+ EN N D ++ + + E+ +EQE+ RKT
Sbjct: 1 MAEDDYNDMDMGYEDEPPEPEIEEGAEEEPENNNEDAVD-DVVGAEDDKEQEKTARPRKT 59
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 60 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 119
Query: 121 SYEDWGVDELIVEDSWKRQVGG 142
SYEDWGVDELIVEDSWKRQVGG
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGG 141
>gi|125544663|gb|EAY90802.1| hypothetical protein OsI_12404 [Oryza sativa Indica Group]
Length = 143
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/142 (83%), Positives = 125/142 (88%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD+DYND+DMGYEDEPPEPEIEEGAEE+ EN N D + E +EQE+ + RKT
Sbjct: 1 MADDDYNDMDMGYEDEPPEPEIEEGAEEEPENNNEDGPDEVVGAEAEDKEQEKTQRPRKT 60
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 120
Query: 121 SYEDWGVDELIVEDSWKRQVGG 142
SYEDWGVDELIVEDSWKRQVGG
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGG 142
>gi|115453939|ref|NP_001050570.1| Os03g0586600 [Oryza sativa Japonica Group]
gi|50399946|gb|AAT76334.1| putative DNA-directed RNA polymerase II subunit [Oryza sativa
Japonica Group]
gi|108709558|gb|ABF97353.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative, expressed [Oryza sativa Japonica Group]
gi|113549041|dbj|BAF12484.1| Os03g0586600 [Oryza sativa Japonica Group]
gi|125586969|gb|EAZ27633.1| hypothetical protein OsJ_11577 [Oryza sativa Japonica Group]
gi|215678566|dbj|BAG92221.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/144 (83%), Positives = 129/144 (89%), Gaps = 5/144 (3%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINN--DDINGEPIETEEKEEQEQKEAAR 58
MAD+DYND+DMGYEDEPPEPEIEEGAEE+ EN + D++ G E E+KE QE+ + R
Sbjct: 1 MADDDYNDMDMGYEDEPPEPEIEEGAEEEPENNEDGPDEVVGA--EAEDKE-QEKTQRPR 57
Query: 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 118
KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLP
Sbjct: 58 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLP 117
Query: 119 DGSYEDWGVDELIVEDSWKRQVGG 142
DGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 118 DGSYEDWGVDELIVEDSWKRQVGG 141
>gi|194698110|gb|ACF83139.1| unknown [Zea mays]
gi|414871592|tpg|DAA50149.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
1 [Zea mays]
gi|414871593|tpg|DAA50150.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
2 [Zea mays]
Length = 142
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/146 (80%), Positives = 128/146 (87%), Gaps = 7/146 (4%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAE---NINNDDINGEPIETEEKEEQEQKEAA 57
MAD+DYN++DMGYEDEPPEPEIEEGAEE+ E + +D I GE E +EQE+ +
Sbjct: 1 MADDDYNEIDMGYEDEPPEPEIEEGAEEELENNEDAPDDVIGGEG----EDKEQEKTKRE 56
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT+KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYL
Sbjct: 57 RKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 116
Query: 118 PDGSYEDWGVDELIVEDSWKRQVGGD 143
PDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 117 PDGSYEDWGVDELIVEDSWKRQVGGD 142
>gi|388490954|gb|AFK33543.1| unknown [Lotus japonicus]
Length = 144
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/144 (82%), Positives = 127/144 (88%), Gaps = 1/144 (0%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQK-EAARK 59
MADEDY+D+DMGYEDEP EPEIEEGAEED EN N ++ NG E++E+ Q + RK
Sbjct: 1 MADEDYDDVDMGYEDEPVEPEIEEGAEEDLENKNEEEENGGEPLETEEKEEVQPVQRPRK 60
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
TSKYMTKYERARILGTRALQISMNAPVMVEL GETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 61 TSKYMTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLPD 120
Query: 120 GSYEDWGVDELIVEDSWKRQVGGD 143
GSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 121 GSYEDWGVDELIVEDSWKRQVGGD 144
>gi|195605420|gb|ACG24540.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|195606438|gb|ACG25049.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|195616336|gb|ACG29998.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|413933719|gb|AFW68270.1| DNA-directed RNA polymerase I, II, and III polypeptide [Zea mays]
Length = 142
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/146 (81%), Positives = 128/146 (87%), Gaps = 7/146 (4%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENIN---NDDINGEPIETEEKEEQEQKEAA 57
MAD+DYN++DMGYEDEPPEPEIEEGAEE+ EN +D I GE E +EQE+ +
Sbjct: 1 MADDDYNEIDMGYEDEPPEPEIEEGAEEEPENNEDAPDDVIGGEG----EDKEQEKTKRE 56
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT+KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYL
Sbjct: 57 RKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 116
Query: 118 PDGSYEDWGVDELIVEDSWKRQVGGD 143
PDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 117 PDGSYEDWGVDELIVEDSWKRQVGGD 142
>gi|125600139|gb|EAZ39715.1| hypothetical protein OsJ_24153 [Oryza sativa Japonica Group]
Length = 177
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/176 (59%), Positives = 117/176 (66%), Gaps = 34/176 (19%)
Query: 1 MADEDYNDLDMGYEDEPPE----------PEIE-EGAEEDAENIN--------------- 34
MA++DYND+DMG+ PP P + G +N+
Sbjct: 1 MAEDDYNDMDMGFASPPPSLARFRRYSFAPSLGFTGTRMSPQNLRLRYEDEPPEPEIEEG 60
Query: 35 --------NDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
N+D + + E+ +EQE+ RKTSKYMTKYERARILGTRALQISMNAPV
Sbjct: 61 AEEEPENNNEDAVDDVVGAEDDKEQEKTARPRKTSKYMTKYERARILGTRALQISMNAPV 120
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 142
MVELEGETDPLEIAMKELR RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 121 MVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 176
>gi|226498696|ref|NP_001148912.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|195623208|gb|ACG33434.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
Length = 142
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/146 (80%), Positives = 127/146 (86%), Gaps = 7/146 (4%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENIN---NDDINGEPIETEEKEEQEQKEAA 57
MA +DYN++DMGYEDEPPEPEIEEGAEE+ EN +D I GE E +EQE+ +
Sbjct: 1 MAXDDYNEIDMGYEDEPPEPEIEEGAEEEPENNEDAPDDVIGGEG----EDKEQEKTKRE 56
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT+KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYL
Sbjct: 57 RKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 116
Query: 118 PDGSYEDWGVDELIVEDSWKRQVGGD 143
PDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 117 PDGSYEDWGVDELIVEDSWKRQVGGD 142
>gi|294462014|gb|ADE76562.1| unknown [Picea sitchensis]
Length = 147
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/149 (73%), Positives = 123/149 (82%), Gaps = 8/149 (5%)
Query: 1 MADEDYNDLD---MGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKE--EQEQ-K 54
MADEDYND D +GYE+E PE + E AE ++++ +P+ +KE EQEQ +
Sbjct: 1 MADEDYNDFDGGDVGYEEE--PPEPDVEEEVGAEEDEHEEVPADPLGGADKEAVEQEQPR 58
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
+ RKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR
Sbjct: 59 DKPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 118
Query: 115 RYLPDGSYEDWGVDELIVEDSWKRQVGGD 143
RYLPDGSYEDWGVDELIVEDSW+RQVGGD
Sbjct: 119 RYLPDGSYEDWGVDELIVEDSWRRQVGGD 147
>gi|302822553|ref|XP_002992934.1| hypothetical protein SELMODRAFT_236641 [Selaginella moellendorffii]
gi|300139279|gb|EFJ06023.1| hypothetical protein SELMODRAFT_236641 [Selaginella moellendorffii]
Length = 141
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/141 (73%), Positives = 112/141 (79%), Gaps = 1/141 (0%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD+DYND D G ED E EE EE N + G+ E +E E ++ + RKT
Sbjct: 1 MADDDYNDFDGGGEDYDEPVEPEEEVEEQENNEEAPEFGGDG-EFQEAESEQVSDKPRKT 59
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
+KYMTKYERAR+LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 60 TKYMTKYERARVLGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 119
Query: 121 SYEDWGVDELIVEDSWKRQVG 141
SYEDWGVDELIVEDSWKRQVG
Sbjct: 120 SYEDWGVDELIVEDSWKRQVG 140
>gi|116786595|gb|ABK24167.1| unknown [Picea sitchensis]
Length = 147
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 111/149 (74%), Positives = 120/149 (80%), Gaps = 8/149 (5%)
Query: 1 MADEDYNDLD---MGYEDEPPEPEIEEGAEEDAENINN---DDINGEPIETEEKEEQEQK 54
MADEDYND D +GYE+EPPEPEIEE + E D + G + E E+Q
Sbjct: 1 MADEDYNDFDGGDVGYEEEPPEPEIEEEVAPEEEEHEEVPVDTLGGG--DKEPVEQQRPS 58
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
+ RKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR
Sbjct: 59 DKPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 118
Query: 115 RYLPDGSYEDWGVDELIVEDSWKRQVGGD 143
RYLPDGSYEDWGVDELIVEDSW+RQVGGD
Sbjct: 119 RYLPDGSYEDWGVDELIVEDSWRRQVGGD 147
>gi|224284680|gb|ACN40072.1| unknown [Picea sitchensis]
Length = 147
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/149 (74%), Positives = 119/149 (79%), Gaps = 8/149 (5%)
Query: 1 MADEDYNDLD---MGYEDEPPEPEIEEGAEEDAENINN---DDINGEPIETEEKEEQEQK 54
MADEDYND D +GYE+EPPEPEIEE + E D + G + E E+Q
Sbjct: 1 MADEDYNDFDGGDVGYEEEPPEPEIEEEVAPEEEEHEEVPVDTLGGG--DKEPVEQQRPS 58
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
+ RKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR
Sbjct: 59 DKPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 118
Query: 115 RYLPDGSYEDWGVDELIVEDSWKRQVGGD 143
RYLPDGSYEDWGVDELIVEDSW RQVGGD
Sbjct: 119 RYLPDGSYEDWGVDELIVEDSWTRQVGGD 147
>gi|168046743|ref|XP_001775832.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672839|gb|EDQ59371.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 119
Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 99/119 (83%)
Query: 23 EEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISM 82
+E AE D EN + D +G +T + + + RKT+KYMTKYERAR+LGTRALQISM
Sbjct: 1 DEVAEGDEENDDARDFDGLETDTLVDGAEVRTDKPRKTTKYMTKYERARVLGTRALQISM 60
Query: 83 NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVG 141
NAPVMV LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSW+RQVG
Sbjct: 61 NAPVMVNLEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWRRQVG 119
>gi|302796521|ref|XP_002980022.1| hypothetical protein SELMODRAFT_111873 [Selaginella moellendorffii]
gi|300152249|gb|EFJ18892.1| hypothetical protein SELMODRAFT_111873 [Selaginella moellendorffii]
Length = 96
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/95 (88%), Positives = 89/95 (93%)
Query: 47 EKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE 106
E E ++ + RKT+KYMTKYERAR+LGTRALQISMNAPVMVELEGETDPLEIAMKELRE
Sbjct: 1 EAESEQVSDKPRKTTKYMTKYERARVLGTRALQISMNAPVMVELEGETDPLEIAMKELRE 60
Query: 107 RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVG 141
RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVG
Sbjct: 61 RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVG 95
>gi|388514055|gb|AFK45089.1| unknown [Lotus japonicus]
Length = 80
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/80 (98%), Positives = 79/80 (98%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
MTKYERARILGTRALQISMNAPVMVEL GETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 1 MTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
Query: 124 DWGVDELIVEDSWKRQVGGD 143
DWGVDELIVEDSWKRQVGGD
Sbjct: 61 DWGVDELIVEDSWKRQVGGD 80
>gi|400602757|gb|EJP70359.1| RNA polymerase Rpb6 [Beauveria bassiana ARSEF 2860]
Length = 659
Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats.
Identities = 70/125 (56%), Positives = 91/125 (72%), Gaps = 12/125 (9%)
Query: 19 EPEIEEGAEEDAENINNDD-----INGEP-----IETEEKEEQEQK--EAARKTSKYMTK 66
EPE+ EG E+ + N +D ++G+P +K +++K + R T+ YMTK
Sbjct: 27 EPEVAEGDEDQDQLANGEDQDNIVVSGDPSAAANASRTDKSSRDKKIPDEERNTTPYMTK 86
Query: 67 YERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWG 126
YERARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRYLPDG YEDW
Sbjct: 87 YERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPDGYYEDWT 146
Query: 127 VDELI 131
+EL+
Sbjct: 147 CEELL 151
>gi|350536293|ref|NP_001233048.1| uncharacterized protein LOC100165288 [Acyrthosiphon pisum]
gi|239788305|dbj|BAH70841.1| ACYPI005782 [Acyrthosiphon pisum]
gi|239790530|dbj|BAH71820.1| ACYPI006245 [Acyrthosiphon pisum]
Length = 132
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/134 (58%), Positives = 99/134 (73%), Gaps = 3/134 (2%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MADE+++ D G +D + + E D N D+I+ PI+ + + Q+ K R T
Sbjct: 1 MADEEFDHDDGGADDFDEVEDDADLDELDQPEENEDNIDILPIQEAQSQVQKSK---RIT 57
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
+KYMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP IRRYLPD
Sbjct: 58 TKYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKKRKIPIIIRRYLPDN 117
Query: 121 SYEDWGVDELIVED 134
SYEDWG+DELI+ D
Sbjct: 118 SYEDWGIDELIIVD 131
>gi|348511249|ref|XP_003443157.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Oreochromis niloticus]
Length = 127
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ +DD E ++ E +Q R T+ YMTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDDD--QENVQILPAGEGQQANQKRITTPYMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DELI+ D
Sbjct: 81 VELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 127
>gi|406603005|emb|CCH45473.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 139
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/139 (55%), Positives = 95/139 (68%), Gaps = 9/139 (6%)
Query: 1 MADEDY-NDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAA-- 57
M+D D+ + + YED P+ +E ED I N + + E+ + +E A
Sbjct: 1 MSDYDFEQEYNSDYEDIQPQ---QEEVAEDGRTIVNGGTGADDFQHEQARRKTTRELAIK 57
Query: 58 ---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+KEL + KIP IR
Sbjct: 58 KEDRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELSQNKIPLVIR 117
Query: 115 RYLPDGSYEDWGVDELIVE 133
RYLPDGSYEDWG DELIV+
Sbjct: 118 RYLPDGSYEDWGCDELIVD 136
>gi|71020411|ref|XP_760436.1| hypothetical protein UM04289.1 [Ustilago maydis 521]
gi|46100105|gb|EAK85338.1| hypothetical protein UM04289.1 [Ustilago maydis 521]
Length = 215
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 87/131 (66%), Gaps = 12/131 (9%)
Query: 13 YEDEPP--------EPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYM 64
Y+DE P E + ++GA+ A I + G+P Q A R T+ YM
Sbjct: 13 YDDEEPVYDGDDLGEEQFDDGADGAANGIVHSSAGGDP----STSMAGQANAERITTPYM 68
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYED 124
TKYERARILGTRALQISMNAPV+V EGETDPLEIAMKEL +KIP +RRYLPDGSYED
Sbjct: 69 TKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLPDGSYED 128
Query: 125 WGVDELIVEDS 135
W V ELIV DS
Sbjct: 129 WTVSELIVSDS 139
>gi|241558215|ref|XP_002400181.1| RNA polymerase subunit K, putative [Ixodes scapularis]
gi|215499742|gb|EEC09236.1| RNA polymerase subunit K, putative [Ixodes scapularis]
gi|442752305|gb|JAA68312.1| Putative rna polymerase subunit k [Ixodes ricinus]
Length = 129
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/100 (69%), Positives = 83/100 (83%), Gaps = 2/100 (2%)
Query: 35 NDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGET 94
NDD N E ++ + + Q+ ++ R T+ YMTKYERAR+LGTRALQI+M APVMVELEGET
Sbjct: 32 NDDENIELLQASDGQPQQNQK--RITTMYMTKYERARVLGTRALQIAMCAPVMVELEGET 89
Query: 95 DPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
DPL+IAMKEL+ RKIP IRRYLPDGSYEDWG+DELI+ D
Sbjct: 90 DPLQIAMKELKARKIPIIIRRYLPDGSYEDWGIDELIITD 129
>gi|229366558|gb|ACQ58259.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Anoplopoma fimbria]
Length = 127
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ + D E ++ E +Q A R T+ YMTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDGD--RENVQILPAGEGQQANAKRITTPYMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DELI+ D
Sbjct: 81 VELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 127
>gi|255082354|ref|XP_002504163.1| predicted protein [Micromonas sp. RCC299]
gi|226519431|gb|ACO65421.1| predicted protein [Micromonas sp. RCC299]
Length = 138
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 83/99 (83%), Gaps = 2/99 (2%)
Query: 43 IETEEKEEQEQKEAA--RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
+E E Q+ A R T+ YMTKYERARILGTRALQISMNAPV+V+L+GETDPLEIA
Sbjct: 38 VEVLEHAPQQGGGAVTERTTTPYMTKYERARILGTRALQISMNAPVLVQLDGETDPLEIA 97
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 139
KELRE++IPFT+RRYLPDGS+EDWGVDELIVED +R+
Sbjct: 98 GKELREKRIPFTVRRYLPDGSWEDWGVDELIVEDPDRRR 136
>gi|50540154|ref|NP_001002544.1| polymerase (RNA) II (DNA directed) polypeptide F [Danio rerio]
gi|49900746|gb|AAH76264.1| Zgc:92790 [Danio rerio]
Length = 127
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 84/107 (78%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ ++D E ++ E +Q R T++YMTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDED--QENVQILPAGEGQQANQKRITTQYMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DELI+ D
Sbjct: 81 VELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 127
>gi|225715824|gb|ACO13758.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Esox
lucius]
Length = 127
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ +DD E ++ E Q R T+ YMTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDDD--QENVQILPAGEGSQANQKRITTPYMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DELI+ D
Sbjct: 81 VELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDWGCDELIITD 127
>gi|254580974|ref|XP_002496472.1| ZYRO0D00880p [Zygosaccharomyces rouxii]
gi|238939364|emb|CAR27539.1| ZYRO0D00880p [Zygosaccharomyces rouxii]
Length = 165
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 98/141 (69%), Gaps = 8/141 (5%)
Query: 1 MADED-YNDLDM--GYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAA 57
+DED +ND++ G D P+ + E+ +NI ++ GE +E+ + KE A
Sbjct: 24 FSDEDNFNDVNGNGGAVDGTGLPQGDGPKAENGDNIVASNMGGEEFTSEQNRRKTLKEKA 83
Query: 58 -----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 112
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP
Sbjct: 84 IPKDERTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLV 143
Query: 113 IRRYLPDGSYEDWGVDELIVE 133
IRRY+PDGS+EDW V+ELIV+
Sbjct: 144 IRRYMPDGSFEDWSVEELIVD 164
>gi|348673189|gb|EGZ13008.1| hypothetical protein PHYSODRAFT_286529 [Phytophthora sojae]
Length = 135
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/85 (76%), Positives = 75/85 (88%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
E +Q A R T++YMTKYERAR+LGTRALQISMNAPVMV++EGETDPL+IAMKELRERK
Sbjct: 51 ESHKQPNAHRITTRYMTKYERARVLGTRALQISMNAPVMVDIEGETDPLKIAMKELRERK 110
Query: 109 IPFTIRRYLPDGSYEDWGVDELIVE 133
IP IRRYLPD S+EDW +DELI+E
Sbjct: 111 IPIIIRRYLPDNSFEDWSIDELIIE 135
>gi|254569290|ref|XP_002491755.1| RNA polymerase subunit ABC23, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|238031552|emb|CAY69475.1| RNA polymerase subunit ABC23, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|328351744|emb|CCA38143.1| DNA-directed RNA Polymerase II subunit F [Komagataella pastoris CBS
7435]
Length = 155
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/141 (57%), Positives = 96/141 (68%), Gaps = 13/141 (9%)
Query: 4 EDYNDLDMGYEDEPPEPE-IEEGAEEDAENINNDD----INGEPIETEEKEEQEQKEAA- 57
ED + D +ED +PE G D I N D +NG I+ K + KE A
Sbjct: 18 EDEHFSDDNFEDRSTQPEDYAVGVTADGRQIINGDGIQEVNG-TIKAHRK--RSNKELAI 74
Query: 58 ----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 113
R T+ Y+TKYERARILGTRALQISMNAPV+V++EGETDPL+IAMKEL +RKIP I
Sbjct: 75 LKEERTTTPYLTKYERARILGTRALQISMNAPVLVDIEGETDPLQIAMKELSQRKIPLVI 134
Query: 114 RRYLPDGSYEDWGVDELIVED 134
RRYLPDGSYEDWG DELIV++
Sbjct: 135 RRYLPDGSYEDWGCDELIVDN 155
>gi|301102317|ref|XP_002900246.1| DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative
[Phytophthora infestans T30-4]
gi|262102398|gb|EEY60450.1| DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative
[Phytophthora infestans T30-4]
Length = 136
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 65/85 (76%), Positives = 75/85 (88%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
E +Q A R T++YMTKYERAR+LGTRALQISMNAPVMV++EGETDPL+IAMKELRERK
Sbjct: 52 ESHKQPNAHRITTRYMTKYERARVLGTRALQISMNAPVMVDIEGETDPLKIAMKELRERK 111
Query: 109 IPFTIRRYLPDGSYEDWGVDELIVE 133
IP IRRYLPD S+EDW +DELI+E
Sbjct: 112 IPIIIRRYLPDNSFEDWSIDELIIE 136
>gi|410901637|ref|XP_003964302.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Takifugu rubripes]
Length = 127
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ ++D E ++ E +Q R T+ YMTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDED--QENVQILPAGEGQQANQKRITTPYMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DELI+ D
Sbjct: 81 VELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIISD 127
>gi|325183314|emb|CCA17772.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 134
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 86/103 (83%), Gaps = 1/103 (0%)
Query: 31 ENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVEL 90
E++ N+D + E +E + + + A R T+KYMTK+ERAR+LGTRALQISMNAPVMV++
Sbjct: 33 EDVVNEDGSHERVEILD-DSHRKPNAQRVTTKYMTKFERARVLGTRALQISMNAPVMVDI 91
Query: 91 EGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
EGETDPL+IA+KELR+RKIP IRRYLPDGS+EDW +DELI+E
Sbjct: 92 EGETDPLKIALKELRDRKIPIIIRRYLPDGSFEDWSIDELIIE 134
>gi|47217008|emb|CAG01636.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ ++D E ++ E +Q R T+ YMTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDED--QENVQILPAGEGQQANQKRITTPYMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DELI+ D
Sbjct: 81 VELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 127
>gi|412988852|emb|CCO15443.1| DNA-directed RNA polymerases I [Bathycoccus prasinos]
Length = 150
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%), Gaps = 3/120 (2%)
Query: 23 EEGAEEDAENINNDDINGEPIETEEKEEQEQKEA---ARKTSKYMTKYERARILGTRALQ 79
+EG + D +NI + E + K R T+ YMTKYERARILGTRALQ
Sbjct: 29 DEGMDVDGDNIIASGDRSSSLGAREGGGKRGKAVPKDQRTTTPYMTKYERARILGTRALQ 88
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ 139
ISMNAPV+V+LEGETDPL+IA KELRE+++PFT+RR++PDGS+EDWGVDELIVED +R+
Sbjct: 89 ISMNAPVLVQLEGETDPLDIANKELREKRVPFTVRRFMPDGSWEDWGVDELIVEDPDRRR 148
>gi|229366770|gb|ACQ58365.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Anoplopoma fimbria]
Length = 127
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 83/110 (75%), Gaps = 2/110 (1%)
Query: 25 GAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNA 84
G +D EN+ + D E ++ E +Q A R T+ YMTKYERAR+LGTRALQI+M A
Sbjct: 20 GGLDDLENVEDGD--RENVQILPAGEGQQANAKRITTPYMTKYERARVLGTRALQIAMCA 77
Query: 85 PVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
PVMVELEGETDPL+IAMKEL+ RKIP IRRY PDGSYEDWG DELI+ D
Sbjct: 78 PVMVELEGETDPLQIAMKELKSRKIPIIIRRYPPDGSYEDWGCDELIITD 127
>gi|221219376|gb|ACM08349.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Salmo
salar]
Length = 127
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ ++D E ++ E Q R T++YMTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDED--QENVKILPAGEGSQANQKRITTQYMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DELI+ D
Sbjct: 81 VELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDWGCDELIITD 127
>gi|126136555|ref|XP_001384801.1| subunit common to RNA polymerases I, II, and III [Scheffersomyces
stipitis CBS 6054]
gi|126092023|gb|ABN66772.1| subunit common to RNA polymerases I, II, and III [Scheffersomyces
stipitis CBS 6054]
Length = 157
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 94/140 (67%), Gaps = 10/140 (7%)
Query: 4 EDYNDLDMGYEDEPPEPEIEEGAEE-----DAENINNDDINGEPIETEEKEEQEQKEAA- 57
+D++ D ED+ EPE E + D + I N + + ++ KE A
Sbjct: 17 DDFDQPDHFSEDDFQEPEGEANGDATMKTADGKTIINGGFGPDDASANQPRQKTAKELAI 76
Query: 58 ----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 113
R T+ YMTKYERAR+LGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP I
Sbjct: 77 PKEKRTTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVI 136
Query: 114 RRYLPDGSYEDWGVDELIVE 133
RRYLPDGSYEDWG DELIV+
Sbjct: 137 RRYLPDGSYEDWGCDELIVD 156
>gi|221220940|gb|ACM09131.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Salmo
salar]
Length = 127
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ ++D E ++ E Q R T++YMTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDED--QENVKILPAGEGSQANQKRITTQYMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DELI+ D
Sbjct: 81 VELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDWGCDELIITD 127
>gi|255726938|ref|XP_002548395.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
gi|240134319|gb|EER33874.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
Length = 213
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Query: 39 NGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLE 98
N +PI+ +E K+ R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+
Sbjct: 119 NSQPIKKTTRELAIPKDK-RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQ 177
Query: 99 IAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
IAMKEL +RKIP IRRYLPDGSYEDWG DELIV+
Sbjct: 178 IAMKELAQRKIPLVIRRYLPDGSYEDWGCDELIVD 212
>gi|449691499|ref|XP_004212693.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like, partial [Hydra magnipapillata]
Length = 122
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 74/84 (88%)
Query: 50 EQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 109
E Q++ R T+ YMTKYERAR+LGTRALQISMNAPVMVELEGETDPL+IAMKEL+ RKI
Sbjct: 39 EASQQQKKRVTTPYMTKYERARVLGTRALQISMNAPVMVELEGETDPLQIAMKELKVRKI 98
Query: 110 PFTIRRYLPDGSYEDWGVDELIVE 133
P IRR+LPDGSYEDW +DELI++
Sbjct: 99 PIIIRRFLPDGSYEDWAIDELIID 122
>gi|302847622|ref|XP_002955345.1| hypothetical protein VOLCADRAFT_106747 [Volvox carteri f.
nagariensis]
gi|300259417|gb|EFJ43645.1| hypothetical protein VOLCADRAFT_106747 [Volvox carteri f.
nagariensis]
Length = 132
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 71/75 (94%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T++YMTKYE+AR+LGTRALQISMNAPVMVEL GETDPLEIAMKELRE+K+PFTIRRYLPD
Sbjct: 58 TTRYMTKYEKARVLGTRALQISMNAPVMVELSGETDPLEIAMKELREKKVPFTIRRYLPD 117
Query: 120 GSYEDWGVDELIVED 134
GSYEDW + EL+V D
Sbjct: 118 GSYEDWSISELVVPD 132
>gi|197128486|gb|ACH44984.1| putative DNA directed RNA polymerase II polypeptide F variant 2
[Taeniopygia guttata]
Length = 127
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 76/94 (80%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E++Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERQQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|440791589|gb|ELR12827.1| RNA polymerase subunit [Acanthamoeba castellanii str. Neff]
Length = 102
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 72/76 (94%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT++YMTKYERAR+LGTRALQISMNAP+MVELEGETDPLEIA KELRERKIP IRRYL
Sbjct: 27 RKTTRYMTKYERARVLGTRALQISMNAPIMVELEGETDPLEIAQKELRERKIPIIIRRYL 86
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW +DEL+V+
Sbjct: 87 PDGSFEDWSIDELVVD 102
>gi|149463071|ref|XP_001514439.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Ornithorhynchus anatinus]
gi|327284940|ref|XP_003227193.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Anolis carolinensis]
Length = 127
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 76/94 (80%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E++Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERQQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|432871046|ref|XP_004071844.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Oryzias latipes]
Length = 127
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 83/107 (77%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ ++D E ++ E +Q R T+ +MTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDED--QENVQILPAGEGQQANQKRITTPHMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DELI+ D
Sbjct: 81 VELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 127
>gi|55742300|ref|NP_001006888.1| polymerase (RNA) II (DNA directed) polypeptide F [Xenopus
(Silurana) tropicalis]
gi|50416676|gb|AAH77687.1| polymerase (RNA) II (DNA directed) polypeptide F [Xenopus
(Silurana) tropicalis]
gi|89267399|emb|CAJ83270.1| polymerase (RNA) II (DNA directed) polypeptide F [Xenopus
(Silurana) tropicalis]
Length = 127
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 72/85 (84%)
Query: 50 EQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 109
E +Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKI
Sbjct: 43 EGQQANQKRITTNYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKI 102
Query: 110 PFTIRRYLPDGSYEDWGVDELIVED 134
P IRRYLPDGSYEDWGVDELI+ D
Sbjct: 103 PIIIRRYLPDGSYEDWGVDELIITD 127
>gi|344232897|gb|EGV64770.1| subunit common to RNA polymerases I, II, and [Candida tenuis ATCC
10573]
Length = 154
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 94/142 (66%), Gaps = 10/142 (7%)
Query: 2 ADEDYNDLDMG-----YEDEPPEPEIEEGAE---EDAENINNDDINGEPIETEEKEEQEQ 53
A E+Y+D D E E PEPE + ED I N I + + K E
Sbjct: 12 APENYDDFDQADHFSENEFEDPEPETNGDVDMKTEDGRTIINGGIGPDESKPRAKTTAEL 71
Query: 54 K--EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
+ R T+ YMTKYERAR+LGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP
Sbjct: 72 AIPKHQRTTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPL 131
Query: 112 TIRRYLPDGSYEDWGVDELIVE 133
IRRYLPDGSYEDWG DELI++
Sbjct: 132 VIRRYLPDGSYEDWGCDELIID 153
>gi|122142944|sp|Q32PE0.1|RPAB2_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|79160245|gb|AAI08154.1| Polymerase (RNA) II (DNA directed) polypeptide F [Bos taurus]
Length = 127
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 85/111 (76%), Gaps = 9/111 (8%)
Query: 24 EGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
E AEE+ + +N E + + E+ + QK R T+ YMTKYERAR+LGTRALQI+M
Sbjct: 26 ENAEEEGQ------VNVEILPSGERPQANQK---RITTPYMTKYERARVLGTRALQIAMC 76
Query: 84 APVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
APVMVELEGETDPL IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 77 APVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|68488173|ref|XP_712047.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|68488216|ref|XP_712026.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|46433385|gb|EAK92827.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|46433408|gb|EAK92849.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|238882727|gb|EEQ46365.1| DNA-directed RNA polymerases I [Candida albicans WO-1]
Length = 157
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 78/94 (82%), Gaps = 1/94 (1%)
Query: 40 GEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEI 99
G+P + KE KE R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+I
Sbjct: 64 GQPRKKTTKELAIPKEK-RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQI 122
Query: 100 AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
AMKEL +RKIP IRRYLPDGSYEDWG DELIV+
Sbjct: 123 AMKELAQRKIPLVIRRYLPDGSYEDWGCDELIVD 156
>gi|443918254|gb|ELU38777.1| RNA polymerase rpb6 domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 149
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 85/111 (76%)
Query: 23 EEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISM 82
++G + A D++ EP++ E+Q Q R T++Y+TKYERARILGTRALQISM
Sbjct: 39 QQGEDGQAAGTGAMDVDREPVDMGVVEQQRQPNKERITTRYLTKYERARILGTRALQISM 98
Query: 83 NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
NAPV+V L+GE+DPL+IA+KEL ++KIP IRRYLPDGS+EDW V ELIVE
Sbjct: 99 NAPVLVPLDGESDPLQIAIKELAQKKIPLVIRRYLPDGSFEDWSVSELIVE 149
>gi|126343910|ref|XP_001365095.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Monodelphis domestica]
gi|395540892|ref|XP_003772384.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Sarcophilus harrisii]
Length = 127
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 76/94 (80%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E++Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERQQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|346470037|gb|AEO34863.1| hypothetical protein [Amblyomma maculatum]
Length = 129
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 73/84 (86%)
Query: 51 QEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 110
Q Q+ R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP
Sbjct: 46 QPQQNQKRITTMYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIP 105
Query: 111 FTIRRYLPDGSYEDWGVDELIVED 134
IRRYLPDGSYEDWG+DEL++ D
Sbjct: 106 IIIRRYLPDGSYEDWGIDELLITD 129
>gi|303281806|ref|XP_003060195.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458850|gb|EEH56147.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 84
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/82 (79%), Positives = 76/82 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV+V+L+GETDPLEIA KELRE++IPFT+RRYL
Sbjct: 1 RTTTPYMTKYERARILGTRALQISMNAPVLVQLDGETDPLEIAGKELREKRIPFTVRRYL 60
Query: 118 PDGSYEDWGVDELIVEDSWKRQ 139
PDGS+EDW VDELI+ED +R+
Sbjct: 61 PDGSFEDWSVDELIIEDPDRRR 82
>gi|147900131|ref|NP_001088632.1| DNA directed RNA polymerase II polypeptide F [Xenopus laevis]
gi|55250665|gb|AAH86273.1| LOC495684 protein [Xenopus laevis]
gi|226372762|gb|ACO52006.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Rana
catesbeiana]
Length = 127
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 72/85 (84%)
Query: 50 EQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 109
E +Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKI
Sbjct: 43 EGQQANQKRITTNYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKI 102
Query: 110 PFTIRRYLPDGSYEDWGVDELIVED 134
P IRRYLPDGSYEDWGVDELI+ D
Sbjct: 103 PIIIRRYLPDGSYEDWGVDELIITD 127
>gi|417408211|gb|JAA50672.1| Putative dna-directed rna polymerases i ii and iii subunit rpabc2,
partial [Desmodus rotundus]
Length = 157
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 64 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 123
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 124 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 157
>gi|74225195|dbj|BAE38285.1| unnamed protein product [Mus musculus]
Length = 127
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQASQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
>gi|229366082|gb|ACQ58021.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Anoplopoma fimbria]
Length = 127
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ + D E ++ E +Q A R T+ YMTKYERAR+LGTRALQI+ APVM
Sbjct: 23 DDLENVEDGD--RENVQILPAGEGQQANAKRITTPYMTKYERARVLGTRALQIATCAPVM 80
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
VELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYEDWG DEL++ D
Sbjct: 81 VELEGETDPLQIAMKELKSRKIPTIIRRYLPDGSYEDWGCDELVITD 127
>gi|343425318|emb|CBQ68854.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
III [Sporisorium reilianum SRZ2]
Length = 138
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 85/128 (66%), Gaps = 12/128 (9%)
Query: 13 YEDEPP--------EPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYM 64
YEDE P E + ++GA+ A I + G+P Q A R T+ YM
Sbjct: 13 YEDEEPVYDGDDLGEEQFDDGADAAANGIIHSSAGGDP----SNAMAGQANAERITTPYM 68
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYED 124
TKYERARILGTRALQISMNAPV+V EGETDPLEIAMKEL +KIP +RRYLPDGSYED
Sbjct: 69 TKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELSAKKIPLVVRRYLPDGSYED 128
Query: 125 WGVDELIV 132
W V ELIV
Sbjct: 129 WTVSELIV 136
>gi|432111961|gb|ELK34996.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Myotis
davidii]
Length = 165
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 72 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 131
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 132 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 165
>gi|50422341|ref|XP_459733.1| DEHA2E09812p [Debaryomyces hansenii CBS767]
gi|49655401|emb|CAG87969.1| DEHA2E09812p [Debaryomyces hansenii CBS767]
Length = 158
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 23/147 (15%)
Query: 4 EDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDD-----------INGE--PIETEEKEE 50
ED++ D ED+ EP E EN+NN D ING P E + + +
Sbjct: 17 EDFDQADHFSEDDFNEPAAEN------ENVNNGDVEMKATDGRTIINGGLGPDEVQPRPK 70
Query: 51 QEQKEAA----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE 106
++ A R T+ YMTKYERAR+LGTRALQIS+NAPV+V++EGETDPL+IAMKEL +
Sbjct: 71 SARELAVPKEDRTTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQ 130
Query: 107 RKIPFTIRRYLPDGSYEDWGVDELIVE 133
RKIP +RRYLPDGS+EDWG DELI++
Sbjct: 131 RKIPLVVRRYLPDGSFEDWGCDELIID 157
>gi|384250139|gb|EIE23619.1| RNA polymerase Rpb6 [Coccomyxa subellipsoidea C-169]
Length = 133
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 98/136 (72%), Gaps = 6/136 (4%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEA--AR 58
MA+E+ D G+E + EPE A ++ N +D E E E EQ+ + + R
Sbjct: 1 MAEEEEFGGDAGFEADFDEPE----APDEPFNEGEEDALPEGEERMEILEQQAQPSDRPR 56
Query: 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 118
T++YMTKYERARILGTRALQISMNAPVMVEL GE+DPLEIAMKELRE+KIPF +RRYLP
Sbjct: 57 ITTRYMTKYERARILGTRALQISMNAPVMVELNGESDPLEIAMKELREKKIPFIVRRYLP 116
Query: 119 DGSYEDWGVDELIVED 134
DGSYEDW ++ELI D
Sbjct: 117 DGSYEDWTIEELIQSD 132
>gi|45382031|ref|NP_990065.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Gallus
gallus]
gi|326911899|ref|XP_003202293.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Meleagris gallopavo]
gi|6522686|emb|CAB62065.1| RNA polymerase common subunit RPB6 [Gallus gallus]
Length = 127
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 78/96 (81%), Gaps = 3/96 (3%)
Query: 39 NGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLE 98
N E + + E++ QK R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL
Sbjct: 35 NVEILPSGERQAANQK---RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLL 91
Query: 99 IAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 92 IAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|13786166|ref|NP_112625.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Rattus
norvegicus]
gi|58037181|ref|NP_081507.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Mus
musculus]
gi|311255104|ref|XP_003126077.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 1 [Sus scrofa]
gi|311255106|ref|XP_003126078.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 2 [Sus scrofa]
gi|335287648|ref|XP_003355408.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Sus scrofa]
gi|350583791|ref|XP_003481589.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 1 [Sus scrofa]
gi|350583793|ref|XP_003481590.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 2 [Sus scrofa]
gi|350583795|ref|XP_003481591.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 3 [Sus scrofa]
gi|8134658|sp|O88828.1|RPAB2_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|47117076|sp|P61219.1|RPAB2_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|3650216|dbj|BAA33414.1| RNA polymerase II [Rattus norvegicus]
gi|12841772|dbj|BAB25345.1| unnamed protein product [Mus musculus]
gi|19353493|gb|AAH24419.1| Polymerase (RNA) II (DNA directed) polypeptide F [Mus musculus]
gi|53733956|gb|AAH83552.1| Polymerase (RNA) II (DNA directed) polypeptide F [Rattus
norvegicus]
gi|148672722|gb|EDL04669.1| polymerase (RNA) II (DNA directed) polypeptide F [Mus musculus]
gi|149065948|gb|EDM15821.1| polymerase (RNA) II (DNA directed) polypeptide F [Rattus
norvegicus]
Length = 127
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
>gi|189053151|dbj|BAG34773.1| unnamed protein product [Homo sapiens]
Length = 127
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|57092769|ref|XP_531740.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 1 [Canis lupus familiaris]
gi|301757504|ref|XP_002914588.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Ailuropoda melanoleuca]
gi|410965535|ref|XP_003989303.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Felis catus]
Length = 127
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|11527390|ref|NP_068809.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Homo
sapiens]
gi|197099562|ref|NP_001127626.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Pongo
abelii]
gi|269315856|ref|NP_001032552.2| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Bos
taurus]
gi|388452428|ref|NP_001252903.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|55661193|ref|XP_515126.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 2 [Pan troglodytes]
gi|291414667|ref|XP_002723577.1| PREDICTED: DNA directed RNA polymerase II polypeptide F-like
[Oryctolagus cuniculus]
gi|296191869|ref|XP_002743812.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Callithrix jacchus]
gi|332231190|ref|XP_003264781.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 1 [Nomascus leucogenys]
gi|344296242|ref|XP_003419818.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Loxodonta africana]
gi|348569492|ref|XP_003470532.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cavia porcellus]
gi|354496424|ref|XP_003510326.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cricetulus griseus]
gi|395819802|ref|XP_003783268.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Otolemur garnettii]
gi|397501922|ref|XP_003821623.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Pan paniscus]
gi|403283017|ref|XP_003932925.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Saimiri boliviensis boliviensis]
gi|426225768|ref|XP_004007035.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Ovis aries]
gi|47117760|sp|P61217.1|RPAB2_CRIGR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|47117761|sp|P61218.1|RPAB2_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=DNA-directed RNA polymerases I,
II, and III 14.4 kDa polypeptide; AltName:
Full=RPABC14.4; Short=RPB14.4; AltName: Full=RPB6
homolog; AltName: Full=RPC15
gi|75054738|sp|Q5R592.1|RPAB2_PONAB RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|157879780|pdb|1QKL|A Chain A, Hrpabc14.4, Essential Subunit Of Human Rna Polymerases I,
Ii And Iii
gi|415388|emb|CAA81629.1| RNA Polymerase II subunit 14.4 kD [Homo sapiens]
gi|546863|gb|AAB30834.1| RNA polymerase common subunit RPB6 [Cricetinae]
gi|13097771|gb|AAH03582.1| Polymerase (RNA) II (DNA directed) polypeptide F [Homo sapiens]
gi|47678623|emb|CAG30432.1| POLR2F [Homo sapiens]
gi|48146159|emb|CAG33302.1| POLR2F [Homo sapiens]
gi|55732753|emb|CAH93074.1| hypothetical protein [Pongo abelii]
gi|109451432|emb|CAK54577.1| POLR2F [synthetic construct]
gi|109452028|emb|CAK54876.1| POLR2F [synthetic construct]
gi|119580607|gb|EAW60203.1| polymerase (RNA) II (DNA directed) polypeptide F, isoform CRA_b
[Homo sapiens]
gi|208965372|dbj|BAG72700.1| polymerase (RNA) II (DNA directed) polypeptide F [synthetic
construct]
gi|296487009|tpg|DAA29122.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Bos taurus]
gi|351699272|gb|EHB02191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Heterocephalus glaber]
gi|355563660|gb|EHH20222.1| hypothetical protein EGK_03030 [Macaca mulatta]
gi|355784978|gb|EHH65829.1| hypothetical protein EGM_02676 [Macaca fascicularis]
gi|380813882|gb|AFE78815.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|383419313|gb|AFH32870.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|384947772|gb|AFI37491.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|410305086|gb|JAA31143.1| polymerase (RNA) II (DNA directed) polypeptide F [Pan troglodytes]
gi|431905192|gb|ELK10239.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Pteropus alecto]
gi|444517667|gb|ELV11712.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Tupaia
chinensis]
Length = 127
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|281351145|gb|EFB26729.1| hypothetical protein PANDA_002504 [Ailuropoda melanoleuca]
Length = 132
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 39 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 98
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 99 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 132
>gi|307168238|gb|EFN61464.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Camponotus floridanus]
Length = 129
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 83/109 (76%), Gaps = 8/109 (7%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
E+D ENI E + E QK + R T++YMTKYERAR+LGTRALQI+M APV
Sbjct: 29 EDDGENI-------ELLNANEATAGVQK-SKRITTRYMTKYERARVLGTRALQIAMCAPV 80
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
MVELEGETDPL+IAMKEL++RKIP IRRYLPD SYEDWG+DELI+ D
Sbjct: 81 MVELEGETDPLQIAMKELKQRKIPIIIRRYLPDNSYEDWGIDELIIIDH 129
>gi|383854730|ref|XP_003702873.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Megachile rotundata]
Length = 130
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 83/109 (76%), Gaps = 8/109 (7%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
EED ENI E I E Q+ + R T++YMTKYERAR+LGTRALQI+M APV
Sbjct: 30 EEDGENI-------ELIAAGEATGGVQR-SKRITTRYMTKYERARVLGTRALQIAMCAPV 81
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
MVELEGETDPL+IAMKEL++RKIP IRRYLPD SYEDWG+DELI+ D
Sbjct: 82 MVELEGETDPLQIAMKELKQRKIPIVIRRYLPDNSYEDWGIDELIIIDH 130
>gi|149743032|ref|XP_001501309.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Equus caballus]
Length = 127
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|344238230|gb|EGV94333.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Cricetulus griseus]
Length = 121
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 28 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 87
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 88 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 121
>gi|426394448|ref|XP_004063508.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2, partial [Gorilla gorilla gorilla]
Length = 120
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 27 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 86
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 87 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 120
>gi|242007913|ref|XP_002424760.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212508274|gb|EEB12022.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 132
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 73/80 (91%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+KYMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP IR
Sbjct: 52 KSKRITTKYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLQIAMKELKQRKIPIIIR 111
Query: 115 RYLPDGSYEDWGVDELIVED 134
RYLPD SYEDWG+DELI+ D
Sbjct: 112 RYLPDHSYEDWGIDELIIID 131
>gi|440896219|gb|ELR48207.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Bos
grunniens mutus]
Length = 105
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 12 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 71
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 72 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 105
>gi|321455077|gb|EFX66221.1| hypothetical protein DAPPUDRAFT_64901 [Daphnia pulex]
Length = 103
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 73/82 (89%)
Query: 53 QKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 112
Q + R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+++KIP
Sbjct: 22 QLQTKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQKKIPII 81
Query: 113 IRRYLPDGSYEDWGVDELIVED 134
IRRYLPDGSYEDWG+DEL++ D
Sbjct: 82 IRRYLPDGSYEDWGIDELVIND 103
>gi|260941988|ref|XP_002615160.1| hypothetical protein CLUG_05175 [Clavispora lusitaniae ATCC 42720]
gi|238851583|gb|EEQ41047.1| hypothetical protein CLUG_05175 [Clavispora lusitaniae ATCC 42720]
Length = 156
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 71/77 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP IRRYL
Sbjct: 80 RTTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYL 139
Query: 118 PDGSYEDWGVDELIVED 134
PDGSYEDWG DELI+E+
Sbjct: 140 PDGSYEDWGCDELIIEN 156
>gi|225707814|gb|ACO09753.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Osmerus mordax]
Length = 127
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 79/101 (78%)
Query: 34 NNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGE 93
N +D + E ++ E +Q R T++YMTKYERAR+LGTRALQI+M APVMVELEGE
Sbjct: 27 NAEDEDRENVQILPAGEGQQANQKRITTQYMTKYERARVLGTRALQIAMCAPVMVELEGE 86
Query: 94 TDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
TDPL+IAMKEL+ RKIP IRRYLPD SYEDWG DELI+ D
Sbjct: 87 TDPLQIAMKELKGRKIPIIIRRYLPDASYEDWGCDELIITD 127
>gi|290561697|gb|ADD38248.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Lepeophtheirus salmonis]
Length = 135
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/77 (81%), Positives = 71/77 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP IRRYL
Sbjct: 58 RTTTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYL 117
Query: 118 PDGSYEDWGVDELIVED 134
PDGSYEDWG+DELI+ D
Sbjct: 118 PDGSYEDWGIDELIIID 134
>gi|402884196|ref|XP_003905574.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Papio anubis]
Length = 127
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>gi|344301857|gb|EGW32162.1| hypothetical protein SPAPADRAFT_61250 [Spathaspora passalidarum
NRRL Y-27907]
Length = 161
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/76 (80%), Positives = 70/76 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RK+P IRRYL
Sbjct: 85 RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKVPLVIRRYL 144
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDWG DELIV+
Sbjct: 145 PDGSYEDWGCDELIVD 160
>gi|307201767|gb|EFN81440.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Harpegnathos saltator]
gi|307202651|gb|EFN81971.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Harpegnathos saltator]
Length = 130
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 72/80 (90%)
Query: 56 AARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+ R T++YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP IRR
Sbjct: 51 STRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIVIRR 110
Query: 116 YLPDGSYEDWGVDELIVEDS 135
YLPD SYEDWG+DELI+ D
Sbjct: 111 YLPDNSYEDWGIDELIIIDH 130
>gi|156547958|ref|XP_001604960.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Nasonia vitripennis]
Length = 130
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 73/82 (89%)
Query: 54 KEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 113
+++ R T+ YMTKYERARILGTRALQISM APVMVELEGETDPL+IAMKEL++RKIP I
Sbjct: 49 QKSKRITTGYMTKYERARILGTRALQISMCAPVMVELEGETDPLQIAMKELKQRKIPIII 108
Query: 114 RRYLPDGSYEDWGVDELIVEDS 135
RR+LPD SYEDWG+DELI+ D
Sbjct: 109 RRFLPDHSYEDWGIDELIIIDH 130
>gi|241955777|ref|XP_002420609.1| RNA polymerase subunit common to RNA polymerases I, II, and III,
putative [Candida dubliniensis CD36]
gi|223643951|emb|CAX41691.1| RNA polymerase subunit common to RNA polymerases I, II, and III,
putative [Candida dubliniensis CD36]
Length = 157
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP IRRYL
Sbjct: 81 RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYL 140
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDWG DELIV+
Sbjct: 141 PDGSYEDWGCDELIVD 156
>gi|307197591|gb|EFN78795.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Harpegnathos saltator]
Length = 109
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 72/80 (90%)
Query: 56 AARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+ R T++YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP IRR
Sbjct: 30 STRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIVIRR 89
Query: 116 YLPDGSYEDWGVDELIVEDS 135
YLPD SYEDWG+DELI+ D
Sbjct: 90 YLPDNSYEDWGIDELIIIDH 109
>gi|354547934|emb|CCE44669.1| hypothetical protein CPAR2_404730 [Candida parapsilosis]
Length = 162
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP IRRYL
Sbjct: 86 RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYL 145
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDWG DELIV+
Sbjct: 146 PDGSYEDWGCDELIVD 161
>gi|66524012|ref|XP_393973.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Apis mellifera]
gi|340724588|ref|XP_003400663.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Bombus terrestris]
gi|350397886|ref|XP_003485021.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Bombus impatiens]
gi|380021021|ref|XP_003694373.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Apis florea]
Length = 130
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 83/109 (76%), Gaps = 8/109 (7%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
EED ENI E + E Q+ + R T++YMTKYERAR+LGTRALQI+M APV
Sbjct: 30 EEDGENI-------ELLAAGEATGGVQR-SKRITTRYMTKYERARVLGTRALQIAMCAPV 81
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
MVELEGETDPL+IAMKEL++RKIP IRRYLPD SYEDWG+DELI+ D
Sbjct: 82 MVELEGETDPLQIAMKELKQRKIPIIIRRYLPDNSYEDWGIDELIIIDH 130
>gi|332027163|gb|EGI67256.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Acromyrmex echinatior]
Length = 130
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 73/82 (89%)
Query: 54 KEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 113
+ + R T++YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP I
Sbjct: 49 QRSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIII 108
Query: 114 RRYLPDGSYEDWGVDELIVEDS 135
RRYLPD SYEDWG+DELI+ D
Sbjct: 109 RRYLPDNSYEDWGIDELIIIDH 130
>gi|145343764|ref|XP_001416481.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576706|gb|ABO94774.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 81
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/75 (82%), Positives = 71/75 (94%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPLEIA KELRE+++PF +RRY+
Sbjct: 7 RTTTPYMTKYERARILGTRALQISMNAPVLVQLEGETDPLEIAGKELREKRVPFVVRRYM 66
Query: 118 PDGSYEDWGVDELIV 132
PDGSYEDWG+DELIV
Sbjct: 67 PDGSYEDWGIDELIV 81
>gi|448522466|ref|XP_003868694.1| Rpo26 RNA polymerase subunit [Candida orthopsilosis Co 90-125]
gi|380353034|emb|CCG25790.1| Rpo26 RNA polymerase subunit [Candida orthopsilosis]
Length = 158
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP IRRYL
Sbjct: 82 RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYL 141
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDWG DELIV+
Sbjct: 142 PDGSYEDWGCDELIVD 157
>gi|224001376|ref|XP_002290360.1| dna-directed RNA polymerase i [Thalassiosira pseudonana CCMP1335]
gi|220973782|gb|EED92112.1| dna-directed RNA polymerase i, partial [Thalassiosira pseudonana
CCMP1335]
Length = 76
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 72/76 (94%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T++Y+TKYERAR+LGTRALQISMNAPVMV+LEGETDPL+IA KELRERKIP IRRYL
Sbjct: 1 RITTRYLTKYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYL 60
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDWG+DELIV+
Sbjct: 61 PDGSHEDWGIDELIVD 76
>gi|448090011|ref|XP_004196962.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
gi|448094390|ref|XP_004197993.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
gi|359378384|emb|CCE84643.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
gi|359379415|emb|CCE83612.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
Length = 158
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 70/76 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP +RRYL
Sbjct: 82 RTTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVVRRYL 141
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDWG DELI++
Sbjct: 142 PDGSYEDWGCDELIID 157
>gi|149237865|ref|XP_001524809.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451406|gb|EDK45662.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
Length = 165
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP IRRYL
Sbjct: 89 RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYL 148
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDWG DELIV+
Sbjct: 149 PDGSYEDWGCDELIVD 164
>gi|340518299|gb|EGR48540.1| predicted protein [Trichoderma reesei QM6a]
Length = 151
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 95/124 (76%), Gaps = 13/124 (10%)
Query: 19 EPEIEEGAEEDAENINNDD-----INGEPIE----TEEKEEQEQK--EAARKTSKYMTKY 67
EPE+ E +EDAE++N DD I+G+P +++K + +K + R T+ YMTKY
Sbjct: 29 EPEVPE--DEDAEHLNGDDQDNVVISGDPSAAANASKDKSVKNKKIPDDQRTTTPYMTKY 86
Query: 68 ERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGV 127
ERARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+PDG YEDW
Sbjct: 87 ERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYEDWTC 146
Query: 128 DELI 131
+EL+
Sbjct: 147 EELL 150
>gi|91084023|ref|XP_975355.1| PREDICTED: similar to AGAP005873-PA [Tribolium castaneum]
gi|270006702|gb|EFA03150.1| hypothetical protein TcasGA2_TC013063 [Tribolium castaneum]
Length = 131
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/78 (79%), Positives = 71/78 (91%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+KYMTKYERAR+LGTRALQI+M APVMVEL+GETDPL+IAMKEL++RKIP IRRYL
Sbjct: 54 RITTKYMTKYERARVLGTRALQIAMCAPVMVELDGETDPLQIAMKELKQRKIPIIIRRYL 113
Query: 118 PDGSYEDWGVDELIVEDS 135
PD SYEDWG+DELI+ D
Sbjct: 114 PDHSYEDWGIDELIIIDH 131
>gi|146412868|ref|XP_001482405.1| hypothetical protein PGUG_05425 [Meyerozyma guilliermondii ATCC
6260]
gi|146393169|gb|EDK41327.1| hypothetical protein PGUG_05425 [Meyerozyma guilliermondii ATCC
6260]
Length = 158
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 70/76 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RK+P +RRYL
Sbjct: 82 RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELTQRKVPLVVRRYL 141
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDWG DELIV+
Sbjct: 142 PDGSYEDWGCDELIVD 157
>gi|366989393|ref|XP_003674464.1| hypothetical protein NCAS_0A15280 [Naumovozyma castellii CBS 4309]
gi|342300327|emb|CCC68086.1| hypothetical protein NCAS_0A15280 [Naumovozyma castellii CBS 4309]
Length = 157
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/138 (57%), Positives = 92/138 (66%), Gaps = 25/138 (18%)
Query: 21 EIEEGAEEDAENINN---------DDINGEPIET------EEKEEQEQ-----KEAA--- 57
++E ++ED + NN D NG I T + KEEQ Q KE A
Sbjct: 19 DVEHFSDEDNFDTNNANEFKDGETKDANGNTIITGGLGPEQHKEEQIQRRKTLKEKAIPK 78
Query: 58 --RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP IRR
Sbjct: 79 EERTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRR 138
Query: 116 YLPDGSYEDWGVDELIVE 133
YLPDGS+EDW V+ELIV+
Sbjct: 139 YLPDGSFEDWSVEELIVD 156
>gi|308799962|ref|XP_003074762.1| RNA polymerase subunit K (ISS) [Ostreococcus tauri]
gi|116061302|emb|CAL52020.1| RNA polymerase subunit K (ISS) [Ostreococcus tauri]
Length = 149
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/119 (57%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 24 EGAEEDAENINNDDINGEPIETEEKEEQEQK--EAARKTSKYMTKYERARILGTRALQIS 81
EG + D I D G+ + T + R T+ YMTKYERAR+LGTRALQIS
Sbjct: 31 EGGDADGRVIVESDERGDALGTHGRRGTGGAVPRHLRTTTPYMTKYERARVLGTRALQIS 90
Query: 82 MNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQV 140
MNAPV+V+LEGETDPLEIA KELRE+++PF +RRYLPDGSYEDW ++ELIV D R+
Sbjct: 91 MNAPVLVQLEGETDPLEIAGKELREKRVPFVVRRYLPDGSYEDWCIEELIVHDPDARRT 149
>gi|410075760|ref|XP_003955462.1| hypothetical protein KAFR_0B00270 [Kazachstania africana CBS 2517]
gi|372462045|emb|CCF56327.1| hypothetical protein KAFR_0B00270 [Kazachstania africana CBS 2517]
Length = 166
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 81/109 (74%), Gaps = 2/109 (1%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAA--RKTSKYMTKYERARILGTRALQISMNA 84
+E+ I N E T +K +E+ A R T+ YMTKYERARILGTRALQISMNA
Sbjct: 57 DENGNTIITSGFNDEYQSTRKKTLKEKAIAKEDRTTTPYMTKYERARILGTRALQISMNA 116
Query: 85 PVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
PV V+LEGETDPL IAMKEL E+KIP IRRYLPDGS+EDW V+ELIV+
Sbjct: 117 PVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVD 165
>gi|332373212|gb|AEE61747.1| unknown [Dendroctonus ponderosae]
Length = 131
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/78 (79%), Positives = 71/78 (91%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+KYMTKYERAR+LGTRALQI+M APVMVEL+GETDPL+IAMKEL++RKIP IRRYL
Sbjct: 54 RITTKYMTKYERARVLGTRALQIAMCAPVMVELDGETDPLQIAMKELKQRKIPIIIRRYL 113
Query: 118 PDGSYEDWGVDELIVEDS 135
PD SYEDWG+DELI+ D
Sbjct: 114 PDHSYEDWGIDELIIIDH 131
>gi|198438019|ref|XP_002129573.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide F
[Ciona intestinalis]
Length = 128
Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Query: 40 GEPIETEEKEEQEQKEAARK-TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLE 98
G+ +E + E Q E ++ T+ Y+TKYERAR+LGTRALQ+SMNAPVMVELEGETDPL+
Sbjct: 34 GQGVEILDATEGRQIEPTKRITTPYLTKYERARVLGTRALQLSMNAPVMVELEGETDPLQ 93
Query: 99 IAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
IAMKEL+ +KIP IRRY+PDGSYEDW +DELI+E
Sbjct: 94 IAMKELKAKKIPIIIRRYMPDGSYEDWAIDELIIE 128
>gi|170068328|ref|XP_001868823.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
gi|167864391|gb|EDS27774.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
Length = 131
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 72/80 (90%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+KYMTKYERAR+LGTRALQI+M AP+MVELEGETDPL+IAMKEL++RKIP IR
Sbjct: 51 KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIR 110
Query: 115 RYLPDGSYEDWGVDELIVED 134
RYLPD SYEDW +DELI+ D
Sbjct: 111 RYLPDASYEDWSIDELIIID 130
>gi|45190327|ref|NP_984581.1| AEL279Cp [Ashbya gossypii ATCC 10895]
gi|44983223|gb|AAS52405.1| AEL279Cp [Ashbya gossypii ATCC 10895]
gi|374107796|gb|AEY96703.1| FAEL279Cp [Ashbya gossypii FDAG1]
Length = 154
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/149 (53%), Positives = 99/149 (66%), Gaps = 18/149 (12%)
Query: 3 DEDYNDLDMGYEDEPPEPEIEEGAEEDAE-------NINNDDINGEPIETEEKEEQEQ-- 53
+E +ND +ED E ++G E++AE +IN + E+ ++QEQ
Sbjct: 5 EEAFNDGPEHFEDFEQEHFSDDGFEQEAEFQDGETKDINGTTVVTGGTGVEDFQQQEQHR 64
Query: 54 ----KEAA-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL 104
KE A R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDP+ IAMKEL
Sbjct: 65 RRTLKEKAIPKEERTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPMRIAMKEL 124
Query: 105 RERKIPFTIRRYLPDGSYEDWGVDELIVE 133
E+KIP IRRYLPDGS+EDW V+ELIV+
Sbjct: 125 AEKKIPLVIRRYLPDGSFEDWSVEELIVD 153
>gi|320582090|gb|EFW96308.1| DNA-directed RNA polymerases I [Ogataea parapolymorpha DL-1]
Length = 151
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/76 (80%), Positives = 70/76 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV+V++EGETDPL+IA+KEL +RKIP IRRYL
Sbjct: 75 RTTTPYMTKYERARILGTRALQISMNAPVLVDIEGETDPLQIALKELSQRKIPLIIRRYL 134
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDW VDELI++
Sbjct: 135 PDGSYEDWSVDELIID 150
>gi|215259697|gb|ACJ64340.1| DNA-directed RNA polymerase I [Culex tarsalis]
Length = 131
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 72/81 (88%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+KYMTKYERAR+LGTRALQI+M AP+MVELEGETDPL+IAMKEL++RKIP IR
Sbjct: 51 KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIR 110
Query: 115 RYLPDGSYEDWGVDELIVEDS 135
RYLPD SYEDW +DELI+ D
Sbjct: 111 RYLPDASYEDWSIDELIIIDH 131
>gi|50555217|ref|XP_505017.1| YALI0F05082p [Yarrowia lipolytica]
gi|49650887|emb|CAG77824.1| YALI0F05082p [Yarrowia lipolytica CLIB122]
Length = 152
Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 91/123 (73%), Gaps = 10/123 (8%)
Query: 21 EIEEGAEEDAENINNDD---INGEPIETEEKEEQEQ--KEAA-----RKTSKYMTKYERA 70
++EE EE ++ D +NGE +E EK + + +E A R T+ YMTKYERA
Sbjct: 29 DVEENGEEVKTDVAEDGRQIVNGEGVENFEKAVRRKTVRELAIPREERTTTPYMTKYERA 88
Query: 71 RILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 130
R+LGTRALQISMNAP++V++E TDPL+IAMKEL+++KIP IRRYLPDGS+EDWG DEL
Sbjct: 89 RVLGTRALQISMNAPILVDIENATDPLQIAMKELQQKKIPLVIRRYLPDGSFEDWGCDEL 148
Query: 131 IVE 133
IV+
Sbjct: 149 IVD 151
>gi|388855621|emb|CCF50844.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
III [Ustilago hordei]
Length = 138
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 85/128 (66%), Gaps = 12/128 (9%)
Query: 13 YEDEPP--------EPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYM 64
YEDE P E + ++GA+ A I + G+P + ++ R T+ YM
Sbjct: 13 YEDEEPVYDGDDLGEDQFDDGADAAANGIFHSSAGGDPSTPMAGQANQE----RITTPYM 68
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYED 124
TKYERARILGTRALQISMNAPV+V EGETDPLEIAMKEL +KIP +RRYLPDGSYED
Sbjct: 69 TKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLPDGSYED 128
Query: 125 WGVDELIV 132
W V ELI
Sbjct: 129 WTVSELIA 136
>gi|260818258|ref|XP_002604300.1| hypothetical protein BRAFLDRAFT_115114 [Branchiostoma floridae]
gi|229289626|gb|EEN60311.1| hypothetical protein BRAFLDRAFT_115114 [Branchiostoma floridae]
Length = 129
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 72/83 (86%)
Query: 52 EQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
E ++ + T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP
Sbjct: 47 EPQQLQKITTPYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLHIAMKELKVRKIPI 106
Query: 112 TIRRYLPDGSYEDWGVDELIVED 134
IRRYLPDGS+EDWG+DELI+ D
Sbjct: 107 IIRRYLPDGSFEDWGIDELIILD 129
>gi|263173307|gb|ACY69907.1| RNA polymerase subunit K [Cimex lectularius]
Length = 120
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Query: 27 EEDAENINNDDINGEPIE---TEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
E D E+I+ + GE IE + ++A R T+KYMTKYERAR+LGTRALQI+M
Sbjct: 9 EADLEDIDQQEDEGENIELLNVGDARGGGVQKANRITTKYMTKYERARVLGTRALQIAMC 68
Query: 84 APVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
AP+MVEL G+TDPLEIA KEL++RKIP IRRYLPD SYEDWG+DELIV D
Sbjct: 69 APIMVELGGDTDPLEIAKKELKQRKIPIIIRRYLPDNSYEDWGIDELIVTD 119
>gi|357620847|gb|EHJ72887.1| DNA-directed RNA polymerase subunit 6-like protein [Danaus
plexippus]
Length = 132
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 72/81 (88%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T++YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP IR
Sbjct: 52 KSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIR 111
Query: 115 RYLPDGSYEDWGVDELIVEDS 135
RYLPD SYEDW +DELI+ D
Sbjct: 112 RYLPDHSYEDWSIDELIIIDH 132
>gi|58387910|ref|XP_315900.2| AGAP005873-PA [Anopheles gambiae str. PEST]
gi|55238688|gb|EAA11626.2| AGAP005873-PA [Anopheles gambiae str. PEST]
Length = 131
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/78 (78%), Positives = 70/78 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+KYMTKYERAR+LGTRALQI+M AP+MVELEGETDPL+IAMKEL++RKIP IRRYL
Sbjct: 54 RITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRYL 113
Query: 118 PDGSYEDWGVDELIVEDS 135
PD SYEDW +DELI+ D
Sbjct: 114 PDSSYEDWSIDELIIIDH 131
>gi|6325445|ref|NP_015513.1| Rpo26p [Saccharomyces cerevisiae S288c]
gi|133339|sp|P20435.1|RPAB2_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=ABC23; AltName: Full=DNA-directed
RNA polymerases I, II, and III 23 kDa polypeptide
gi|14278328|pdb|1I3Q|F Chain F, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278339|pdb|1I50|F Chain F, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278369|pdb|1I6H|F Chain F, Rna Polymerase Ii Elongation Complex
gi|20150717|pdb|1K83|F Chain F, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749621|pdb|1NIK|F Chain F, Wild Type Rna Polymerase Ii
gi|30749742|pdb|1NT9|F Chain F, Complete 12-Subunit Rna Polymerase Ii
gi|34810558|pdb|1PQV|F Chain F, Rna Polymerase Ii-Tfiis Complex
gi|46015419|pdb|1R5U|F Chain F, Rna Polymerase Ii Tfiib Complex
gi|46015784|pdb|1SFO|F Chain F, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965915|pdb|1R9S|F Chain F, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965927|pdb|1R9T|F Chain F, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966111|pdb|1TWA|F Chain F, Rna Polymerase Ii Complexed With Atp
gi|56966125|pdb|1TWC|F Chain F, Rna Polymerase Ii Complexed With Gtp
gi|56966135|pdb|1TWF|F Chain F, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966145|pdb|1TWG|F Chain F, Rna Polymerase Ii Complexed With Ctp
gi|56966155|pdb|1TWH|F Chain F, Rna Polymerase Ii Complexed With 2'datp
gi|58177169|pdb|1WCM|F Chain F, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679449|pdb|1Y1W|F Chain F, Complete Rna Polymerase Ii Elongation Complex
gi|61679466|pdb|1Y77|F Chain F, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679507|pdb|1Y1V|F Chain F, Refined Rna Polymerase Ii-tfiis Complex
gi|61679520|pdb|1Y1Y|F Chain F, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754248|pdb|2B63|F Chain F, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590859|pdb|2B8K|F Chain F, 12-Subunit Rna Polymerase Ii
gi|122920065|pdb|2E2H|F Chain F, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920080|pdb|2E2I|F Chain F, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920095|pdb|2E2J|F Chain F, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921034|pdb|2NVQ|F Chain F, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921070|pdb|2NVT|F Chain F, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921086|pdb|2NVX|F Chain F, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921101|pdb|2NVY|F Chain F, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921113|pdb|2NVZ|F Chain F, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104679|pdb|2JA5|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104694|pdb|2JA6|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104715|pdb|2JA7|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104727|pdb|2JA7|R Chain R, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104739|pdb|2JA8|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387188|pdb|2YU9|F Chain F, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877778|pdb|2R7Z|F Chain F, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172232|pdb|2R92|F Chain F, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172245|pdb|2R93|F Chain F, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613467|pdb|2VUM|F Chain F, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368738|pdb|3CQZ|F Chain F, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983595|pdb|3FKI|F Chain F, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781920|pdb|3GTG|F Chain F, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781933|pdb|3GTJ|F Chain F, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781946|pdb|3GTK|F Chain F, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781959|pdb|3GTL|F Chain F, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781972|pdb|3GTM|F Chain F, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781986|pdb|3GTO|F Chain F, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781999|pdb|3GTP|F Chain F, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782012|pdb|3GTQ|F Chain F, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104516|pdb|3H3V|G Chain G, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839446|pdb|3HOU|F Chain F, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839461|pdb|3HOU|R Chain R, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839476|pdb|3HOV|F Chain F, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839491|pdb|3HOW|F Chain F, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839506|pdb|3HOX|F Chain F, Complete Rna Polymerase Ii Elongation Complex V
gi|254839521|pdb|3HOY|F Chain F, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839536|pdb|3HOZ|F Chain F, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471951|pdb|3I4M|F Chain F, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471966|pdb|3I4N|F Chain F, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618770|pdb|3K1F|F Chain F, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914556|pdb|3K7A|F Chain F, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982479|pdb|3M3Y|F Chain F, Rna Polymerase Ii Elongation Complex C
gi|295982492|pdb|3M4O|F Chain F, Rna Polymerase Ii Elongation Complex B
gi|325053968|pdb|3PO2|F Chain F, Arrested Rna Polymerase Ii Elongation Complex
gi|325053983|pdb|3PO3|F Chain F, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634543|pdb|3QT1|F Chain F, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197460|pdb|3RZD|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197472|pdb|3RZO|F Chain F, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197484|pdb|3S14|F Chain F, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197496|pdb|3S15|F Chain F, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197508|pdb|3S16|F Chain F, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197520|pdb|3S17|F Chain F, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197532|pdb|3S1M|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197544|pdb|3S1N|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197556|pdb|3S1Q|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197568|pdb|3S1R|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197580|pdb|3S2D|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781201|pdb|3S2H|F Chain F, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380841|pdb|4A3C|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546295|pdb|4A3B|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546313|pdb|4A3D|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546330|pdb|4A3E|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546347|pdb|4A3F|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546364|pdb|4A3J|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546381|pdb|4A3K|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546397|pdb|4A3L|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546414|pdb|4A3M|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977884|pdb|4A3G|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977899|pdb|4A3I|F Chain F, Rna Polymerase Ii Binary Complex With Dna
gi|380764984|pdb|4A93|F Chain F, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145451|pdb|4BBR|F Chain F, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145464|pdb|4BBS|F Chain F, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|172453|gb|AAA34989.1| RNA polymerase II sixth subunit (RP026) [Saccharomyces cerevisiae]
gi|287824|emb|CAA37382.1| RNA polymerase, RPB6 subunit [Saccharomyces cerevisiae]
gi|786304|gb|AAB64616.1| 23 kD polypeptide of RNA Polymerases I, II, and III (Swiss Prot.
accession number P20435) [Saccharomyces cerevisiae]
gi|151942957|gb|EDN61303.1| ABC23 [Saccharomyces cerevisiae YJM789]
gi|190408109|gb|EDV11374.1| RNA polymerases I [Saccharomyces cerevisiae RM11-1a]
gi|259150344|emb|CAY87147.1| Rpo26p [Saccharomyces cerevisiae EC1118]
gi|285815711|tpg|DAA11603.1| TPA: Rpo26p [Saccharomyces cerevisiae S288c]
gi|392296190|gb|EIW07293.1| Rpo26p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 155
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 100/152 (65%), Gaps = 28/152 (18%)
Query: 2 ADEDYNDLDM-GYEDEPP---EPEIEEGAEEDAENINNDDINGEPIET-----EEKEEQE 52
+E++ D D+ + DE +P+ ++G DA NG+ I T E+ ++ E
Sbjct: 11 GNENFEDFDVEHFSDEETYEEKPQFKDGETTDA--------NGKTIVTGGNGPEDFQQHE 62
Query: 53 Q------KEAA-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM 101
Q KE A R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAM
Sbjct: 63 QIRRKTLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAM 122
Query: 102 KELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
KEL E+KIP IRRYLPDGS+EDW V+ELIV+
Sbjct: 123 KELAEKKIPLVIRRYLPDGSFEDWSVEELIVD 154
>gi|391331311|ref|XP_003740093.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Metaseiulus occidentalis]
Length = 126
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 77/99 (77%)
Query: 34 NNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGE 93
N DD + E ++ Q+ R T++YMTKYERAR+LGTRALQI+M APVMVELEGE
Sbjct: 25 NMDDFDTAGGGNEGDAQEPQQNTKRITTQYMTKYERARVLGTRALQIAMGAPVMVELEGE 84
Query: 94 TDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
TDPLEIA KEL+ RKIP IRRYLPDGS+E WGVDELIV
Sbjct: 85 TDPLEIAKKELKVRKIPIKIRRYLPDGSFEVWGVDELIV 123
>gi|440906517|gb|ELR56770.1| hypothetical protein M91_14188 [Bos grunniens mutus]
Length = 128
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 85/115 (73%), Gaps = 11/115 (9%)
Query: 21 EIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQI 80
++E EE EN+ E + + E+ + QK R T+ YMTKYERAR+LGTRALQI
Sbjct: 24 DLENSTEEGQENV-------EILPSGERPQANQK---RITTPYMTKYERARVLGTRALQI 73
Query: 81 SM-NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
+M APVMVELEGETDPL IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 74 AMMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 128
>gi|349581984|dbj|GAA27141.1| K7_Rpo26p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 155
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 100/152 (65%), Gaps = 28/152 (18%)
Query: 2 ADEDYNDLDM-GYEDEPP---EPEIEEGAEEDAENINNDDINGEPIET-----EEKEEQE 52
+E++ D D+ + DE +P+ ++G DA NG+ I T E+ ++ E
Sbjct: 11 GNENFEDFDVEHFSDEETYEEKPQFKDGETTDA--------NGKTIVTGGNGPEDFQQHE 62
Query: 53 Q------KEAA-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM 101
Q KE A R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAM
Sbjct: 63 QIRRKTLKERAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAM 122
Query: 102 KELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
KEL E+KIP IRRYLPDGS+EDW V+ELIV+
Sbjct: 123 KELAEKKIPLVIRRYLPDGSFEDWSVEELIVD 154
>gi|157137087|ref|XP_001663881.1| DNA-directed RNA polymerase subunit rpb6 [Aedes aegypti]
gi|108880924|gb|EAT45149.1| AAEL003552-PA [Aedes aegypti]
Length = 131
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 72/80 (90%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+KYMTKYERAR+LGTRALQI+M AP+MVELEGETDPL+IAMKEL++RKIP IR
Sbjct: 51 KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIR 110
Query: 115 RYLPDGSYEDWGVDELIVED 134
R+LPD SYEDW +DELI+ D
Sbjct: 111 RFLPDSSYEDWSIDELIIID 130
>gi|365990642|ref|XP_003672150.1| hypothetical protein NDAI_0J00150 [Naumovozyma dairenensis CBS 421]
gi|343770925|emb|CCD26907.1| hypothetical protein NDAI_0J00150 [Naumovozyma dairenensis CBS 421]
Length = 162
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 68/76 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP IRRYL
Sbjct: 86 RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 145
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW V+ELIV+
Sbjct: 146 PDGSFEDWSVEELIVD 161
>gi|444316388|ref|XP_004178851.1| hypothetical protein TBLA_0B04970 [Tetrapisispora blattae CBS 6284]
gi|387511891|emb|CCH59332.1| hypothetical protein TBLA_0B04970 [Tetrapisispora blattae CBS 6284]
Length = 160
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 69/76 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL+IAMKEL E+KIP IRRYL
Sbjct: 84 RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLKIAMKELAEKKIPLVIRRYL 143
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW V+ELIV+
Sbjct: 144 PDGSFEDWSVEELIVD 159
>gi|367003129|ref|XP_003686298.1| hypothetical protein TPHA_0G00260 [Tetrapisispora phaffii CBS 4417]
gi|357524599|emb|CCE63864.1| hypothetical protein TPHA_0G00260 [Tetrapisispora phaffii CBS 4417]
Length = 159
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 69/76 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL+IAMKEL E+KIP IRRYL
Sbjct: 83 RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLKIAMKELSEKKIPLVIRRYL 142
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW V+ELIV+
Sbjct: 143 PDGSFEDWSVEELIVD 158
>gi|443707894|gb|ELU03278.1| hypothetical protein CAPTEDRAFT_181288 [Capitella teleta]
Length = 77
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/75 (81%), Positives = 68/75 (90%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T+ YMTKYERAR+LGTRALQI+M APVMVELEGE DPL+IAMKEL+ RKIP IRRYLPD
Sbjct: 2 TTPYMTKYERARVLGTRALQIAMCAPVMVELEGEKDPLQIAMKELKARKIPIIIRRYLPD 61
Query: 120 GSYEDWGVDELIVED 134
GSYEDWG+DELI+ D
Sbjct: 62 GSYEDWGIDELIISD 76
>gi|255710415|ref|XP_002551491.1| KLTH0A00660p [Lachancea thermotolerans]
gi|238932868|emb|CAR21049.1| KLTH0A00660p [Lachancea thermotolerans CBS 6340]
Length = 155
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 68/76 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP IRRYL
Sbjct: 79 RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 138
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW V+ELIV+
Sbjct: 139 PDGSFEDWSVEELIVD 154
>gi|17864588|ref|NP_524910.1| RNA polymerase II 18kD subunit [Drosophila melanogaster]
gi|194898719|ref|XP_001978915.1| GG12771 [Drosophila erecta]
gi|195497311|ref|XP_002096044.1| GE25464 [Drosophila yakuba]
gi|2500630|sp|Q24320.1|RPAB2_DROME RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=RPB6 homolog
gi|717185|emb|CAA87655.1| RNA polymerase subunit [Drosophila melanogaster]
gi|7296761|gb|AAF52039.1| RNA polymerase II 18kD subunit [Drosophila melanogaster]
gi|25012908|gb|AAN71541.1| RH21608p [Drosophila melanogaster]
gi|190650618|gb|EDV47873.1| GG12771 [Drosophila erecta]
gi|194182145|gb|EDW95756.1| GE25464 [Drosophila yakuba]
gi|220950520|gb|ACL87803.1| RpII18-PA [synthetic construct]
gi|220959430|gb|ACL92258.1| RpII18-PA [synthetic construct]
Length = 131
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 82/109 (75%), Gaps = 7/109 (6%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
EE+A+NI E I ++ R T+KYMTKYERAR+LGTRALQI+M AP+
Sbjct: 30 EEEADNI-------EIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPI 82
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
MVEL+GETDPL+IAMKEL+++KIP IRRYLPD SYEDW +DELI+ D+
Sbjct: 83 MVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVDN 131
>gi|213409217|ref|XP_002175379.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces japonicus yFS275]
gi|212003426|gb|EEB09086.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces japonicus yFS275]
Length = 145
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 79/111 (71%), Gaps = 7/111 (6%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKE-------AARKTSKYMTKYERARILGTRALQI 80
EDA N +N ++G+ A R+T+ YMTKYERARILGTRALQI
Sbjct: 35 EDAANRSNVVVSGDVAAAAAAAASSSGTSAKAITGADRRTTPYMTKYERARILGTRALQI 94
Query: 81 SMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
SMNAPV+V+LEGETDPL+IAMKEL ++KIP +RRYLPDGSYEDW V ELI
Sbjct: 95 SMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYEDWSVSELI 145
>gi|195343629|ref|XP_002038398.1| GM10803 [Drosophila sechellia]
gi|194133419|gb|EDW54935.1| GM10803 [Drosophila sechellia]
Length = 131
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 82/109 (75%), Gaps = 7/109 (6%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
EE+A+NI E I ++ R T+KYMTKYERAR+LGTRALQI+M AP+
Sbjct: 30 EEEADNI-------EIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPI 82
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
MVEL+GETDPL+IAMKEL+++KIP IRRYLPD SYEDW +DELI+ D+
Sbjct: 83 MVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVDN 131
>gi|219111697|ref|XP_002177600.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410485|gb|EEC50414.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 129
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/76 (80%), Positives = 70/76 (92%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T++Y+TKYERAR+LGTRALQISMNAPVMV+L+GETDPL IA KELRERKIP IRRYL
Sbjct: 54 RITTRYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLRIAEKELRERKIPIIIRRYL 113
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW VDEL+V+
Sbjct: 114 PDGSHEDWSVDELVVD 129
>gi|281209893|gb|EFA84061.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 133
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 70/75 (93%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT++YMTKYERAR+LG+RALQISMNAP+MVELEGETDPL+IA KELR +KIP IRR+L
Sbjct: 57 RKTTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFL 116
Query: 118 PDGSYEDWGVDELIV 132
P+G+YEDW VDEL+V
Sbjct: 117 PNGAYEDWSVDELVV 131
>gi|50303495|ref|XP_451689.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640821|emb|CAH02082.1| KLLA0B03476p [Kluyveromyces lactis]
Length = 158
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 68/76 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP IRRYL
Sbjct: 82 RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 141
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW V+ELIV+
Sbjct: 142 PDGSFEDWSVEELIVD 157
>gi|405956092|gb|EKC22908.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Crassostrea gigas]
Length = 128
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 78/96 (81%), Gaps = 2/96 (2%)
Query: 39 NGEPIET--EEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDP 96
+G+PI+ ++ Q + R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDP
Sbjct: 31 DGDPIDILPADQATQAVEPQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDP 90
Query: 97 LEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
L IAMKEL+ RKIP IRR+LPDGS+EDWG+DEL++
Sbjct: 91 LLIAMKELKARKIPIIIRRFLPDGSFEDWGIDELLM 126
>gi|196014319|ref|XP_002117019.1| hypothetical protein TRIADDRAFT_50973 [Trichoplax adhaerens]
gi|190580510|gb|EDV20593.1| hypothetical protein TRIADDRAFT_50973 [Trichoplax adhaerens]
Length = 95
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 70/84 (83%)
Query: 51 QEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 110
Q Q + R T YMTKYERARILGTRALQISMNAPVMVELEGETDPL+IA+KEL+ KIP
Sbjct: 11 QRQDPSKRTTQPYMTKYERARILGTRALQISMNAPVMVELEGETDPLQIALKELKANKIP 70
Query: 111 FTIRRYLPDGSYEDWGVDELIVED 134
+RR+LPDGSYEDW +ELIV +
Sbjct: 71 MIVRRFLPDGSYEDWSCNELIVSE 94
>gi|74151658|dbj|BAE41175.1| unnamed protein product [Mus musculus]
Length = 127
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 70/85 (82%)
Query: 50 EQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 109
E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELE ETDPL IAMK L+ RKI
Sbjct: 43 ERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELELETDPLLIAMKGLKARKI 102
Query: 110 PFTIRRYLPDGSYEDWGVDELIVED 134
P IRRYLPDGSYEDWGVDELI+ D
Sbjct: 103 PIIIRRYLPDGSYEDWGVDELIISD 127
>gi|19075456|ref|NP_587956.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces pombe 972h-]
gi|548818|sp|P36595.1|RPAB2_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerases I, II,
and III 15 kDa polypeptide; AltName: Full=RPC16
gi|256599720|pdb|3H0G|F Chain F, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599732|pdb|3H0G|R Chain R, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|173472|gb|AAA52084.1| RNA polymerase small common phosphorylated subunit
[Schizosaccharomyces pombe]
gi|409477|gb|AAB04116.1| RNA polymerase [Schizosaccharomyces pombe]
gi|3130047|emb|CAA18992.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces pombe]
Length = 142
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 75/102 (73%), Gaps = 10/102 (9%)
Query: 40 GEPIET-------EEKEEQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVMVE 89
GEP T K Q K A R T+ YMTKYERARILGTRALQISMNAPV+V+
Sbjct: 41 GEPSTTVITEDVASSKTAQSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVD 100
Query: 90 LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
LEGETDPL+IAMKEL ++KIP +RRYLPDGSYEDW V ELI
Sbjct: 101 LEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYEDWSVAELI 142
>gi|50288735|ref|XP_446797.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526105|emb|CAG59724.1| unnamed protein product [Candida glabrata]
Length = 159
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/76 (80%), Positives = 68/76 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP IRRYL
Sbjct: 82 RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 141
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW V+EL+V+
Sbjct: 142 PDGSFEDWSVEELVVD 157
>gi|403216566|emb|CCK71063.1| hypothetical protein KNAG_0F03990 [Kazachstania naganishii CBS
8797]
Length = 160
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 83/110 (75%), Gaps = 4/110 (3%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAA----RKTSKYMTKYERARILGTRALQISMN 83
ED + I + +G +E + + +++A R T+ YMTKYERARILGTRALQISMN
Sbjct: 50 EDGKMIIASNADGTAVEEHTRRKTLKEKAIPRDERSTTPYMTKYERARILGTRALQISMN 109
Query: 84 APVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
APV V+LEGETDPL+IA KEL E+KIP IRRYLPDGS+EDW V+ELIV+
Sbjct: 110 APVFVDLEGETDPLKIATKELMEKKIPLVIRRYLPDGSFEDWTVEELIVD 159
>gi|378727457|gb|EHY53916.1| DNA-directed RNA Polymerase II subunit F [Exophiala dermatitidis
NIH/UT8656]
Length = 152
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 95/138 (68%), Gaps = 8/138 (5%)
Query: 2 ADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDD----INGEPIETEEKEEQEQKEA- 56
ADE + + + E+ P+ EI+E A ED N + D + G+P + +K + +
Sbjct: 15 ADETFYEPEETVEEFAPDVEIDEAAIEDRANAEDGDERTVVTGDPNQNVQKPSSDADKKI 74
Query: 57 ---ARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 113
R T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA+KEL ++KIP +
Sbjct: 75 PDDKRSTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLVV 134
Query: 114 RRYLPDGSYEDWGVDELI 131
RRYLPDG YEDW +EL+
Sbjct: 135 RRYLPDGWYEDWTCEELL 152
>gi|156848452|ref|XP_001647108.1| hypothetical protein Kpol_1050p110 [Vanderwaltozyma polyspora DSM
70294]
gi|156117791|gb|EDO19250.1| hypothetical protein Kpol_1050p110 [Vanderwaltozyma polyspora DSM
70294]
Length = 153
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/76 (80%), Positives = 68/76 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP IRRYL
Sbjct: 77 RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 136
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW V+EL+V+
Sbjct: 137 PDGSFEDWSVEELVVD 152
>gi|367017198|ref|XP_003683097.1| hypothetical protein TDEL_0H00270 [Torulaspora delbrueckii]
gi|359750761|emb|CCE93886.1| hypothetical protein TDEL_0H00270 [Torulaspora delbrueckii]
Length = 159
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 68/76 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP IRRYL
Sbjct: 83 RITTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 142
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW V+ELIV+
Sbjct: 143 PDGSFEDWSVEELIVD 158
>gi|429859788|gb|ELA34554.1| DNA-directed RNA polymerases i [Colletotrichum gloeosporioides Nara
gc5]
Length = 153
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 97/135 (71%), Gaps = 13/135 (9%)
Query: 5 DYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIET------EEKEEQEQK--EA 56
DY D ++ EDE E EG EEDA+N+ ++G+P EK +++K +
Sbjct: 23 DYWDPEVPVEDE--EVGRAEGDEEDADNVV---VSGDPSAAANSGKGNEKSHRDKKIPDD 77
Query: 57 ARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+KE+RE+KIP +RRY
Sbjct: 78 QRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRY 137
Query: 117 LPDGSYEDWGVDELI 131
+PDG YEDW +EL+
Sbjct: 138 MPDGYYEDWTCEELL 152
>gi|331223153|ref|XP_003324249.1| DNA-directed RNA Polymerase II subunit F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303239|gb|EFP79830.1| DNA-directed RNA Polymerase II subunit F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 153
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 68/81 (83%)
Query: 53 QKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 112
Q R T+ YMTKYERARILGTRALQISMNAPV+V L+GE+DPLEIAMKEL +RKIP
Sbjct: 73 QPNKIRTTTPYMTKYERARILGTRALQISMNAPVLVPLDGESDPLEIAMKELSQRKIPLI 132
Query: 113 IRRYLPDGSYEDWGVDELIVE 133
+RRYLPDGSYEDW V ELI +
Sbjct: 133 VRRYLPDGSYEDWSVSELIAD 153
>gi|195444855|ref|XP_002070061.1| GK11847 [Drosophila willistoni]
gi|194166146|gb|EDW81047.1| GK11847 [Drosophila willistoni]
Length = 132
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP IR
Sbjct: 52 KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIR 111
Query: 115 RYLPDGSYEDWGVDELIVEDS 135
R+LPD SYEDW +DELI+ D+
Sbjct: 112 RFLPDHSYEDWSIDELIMVDN 132
>gi|195152585|ref|XP_002017217.1| GL21641 [Drosophila persimilis]
gi|198453903|ref|XP_001359394.2| GA11109 [Drosophila pseudoobscura pseudoobscura]
gi|194112274|gb|EDW34317.1| GL21641 [Drosophila persimilis]
gi|198132563|gb|EAL28540.2| GA11109 [Drosophila pseudoobscura pseudoobscura]
Length = 131
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 82/109 (75%), Gaps = 7/109 (6%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
EE+A+NI E I ++ R T+KYMTKYERAR+LGTRALQI+M AP+
Sbjct: 30 EEEADNI-------EIIAPGGTGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPI 82
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
MVEL+GETDPL+IAMKEL+++KIP IRRYLPD SYEDW +DELI+ D+
Sbjct: 83 MVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVDN 131
>gi|194741754|ref|XP_001953352.1| GF17248 [Drosophila ananassae]
gi|190626411|gb|EDV41935.1| GF17248 [Drosophila ananassae]
Length = 131
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 73/81 (90%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP IR
Sbjct: 51 KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIR 110
Query: 115 RYLPDGSYEDWGVDELIVEDS 135
RYLPD SYEDW +DELI+ D+
Sbjct: 111 RYLPDHSYEDWSIDELIMVDN 131
>gi|353251638|pdb|3J0K|F Chain F, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 84
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 68/76 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP IRRYL
Sbjct: 8 RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 67
Query: 118 PDGSYEDWGVDELIVE 133
PDGS+EDW V+ELIV+
Sbjct: 68 PDGSFEDWSVEELIVD 83
>gi|328873121|gb|EGG21488.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 125
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 70/75 (93%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT++YMTKYERAR+LG+RALQISMNAP+MVELEGETDPL+IA KELR +KIP +RR+L
Sbjct: 50 RKTTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIVRRFL 109
Query: 118 PDGSYEDWGVDELIV 132
P+G+YEDW VDELIV
Sbjct: 110 PNGAYEDWSVDELIV 124
>gi|320170068|gb|EFW46967.1| RNA polymerase II core subunit [Capsaspora owczarzaki ATCC 30864]
Length = 139
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 68/73 (93%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +MTKYERAR+LGTRALQISMNAP+MV+ +GETDPL+IAMKELRE+KIP IRR+L
Sbjct: 64 RVTSPFMTKYERARVLGTRALQISMNAPIMVQRDGETDPLQIAMKELREKKIPIIIRRFL 123
Query: 118 PDGSYEDWGVDEL 130
PDGSYEDWGVD+L
Sbjct: 124 PDGSYEDWGVDQL 136
>gi|330793050|ref|XP_003284599.1| hypothetical protein DICPUDRAFT_148388 [Dictyostelium purpureum]
gi|325085513|gb|EGC38919.1| hypothetical protein DICPUDRAFT_148388 [Dictyostelium purpureum]
Length = 129
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 86/123 (69%), Gaps = 9/123 (7%)
Query: 10 DMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYER 69
D GYEDE E E ++ A D + N ++ E + R+T++YMTKYER
Sbjct: 16 DAGYEDEYIEEENQQEAYTDIVDPNQEN---------SAEAGKIPNHLRRTTRYMTKYER 66
Query: 70 ARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDE 129
AR+LG+RALQISMNAP+MVELEGETDPL+IA KELR +KIP IRRYLP+G YEDW VDE
Sbjct: 67 ARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRYLPNGMYEDWSVDE 126
Query: 130 LIV 132
L +
Sbjct: 127 LSI 129
>gi|195396256|ref|XP_002056748.1| GJ11106 [Drosophila virilis]
gi|194143457|gb|EDW59860.1| GJ11106 [Drosophila virilis]
Length = 131
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP IR
Sbjct: 51 KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIR 110
Query: 115 RYLPDGSYEDWGVDELIVEDS 135
R+LPD SYEDW +DELI+ D+
Sbjct: 111 RFLPDHSYEDWSIDELIMVDN 131
>gi|195111658|ref|XP_002000395.1| GI22548 [Drosophila mojavensis]
gi|193916989|gb|EDW15856.1| GI22548 [Drosophila mojavensis]
Length = 131
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP IR
Sbjct: 51 KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIR 110
Query: 115 RYLPDGSYEDWGVDELIVEDS 135
R+LPD SYEDW +DELI+ D+
Sbjct: 111 RFLPDHSYEDWSIDELIMVDN 131
>gi|363750227|ref|XP_003645331.1| hypothetical protein Ecym_2818 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888964|gb|AET38514.1| Hypothetical protein Ecym_2818 [Eremothecium cymbalariae
DBVPG#7215]
Length = 154
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 88/123 (71%), Gaps = 14/123 (11%)
Query: 22 IEEGAEEDAENINNDDINGEPIETEEKEEQEQ------KEAA-----RKTSKYMTKYERA 70
++G +DA N + + I EE ++Q+Q KE A R T+ YMTKYERA
Sbjct: 34 FQDGETKDA---NGNTVVAGGIGPEEFQQQDQHRRRTLKEKAIPKEERTTTPYMTKYERA 90
Query: 71 RILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 130
RILGTRALQISMNAPV V+LEGETDP+ IAMKEL E+KIP +RRYLPDGS+EDW V+EL
Sbjct: 91 RILGTRALQISMNAPVFVDLEGETDPMRIAMKELAEKKIPLVVRRYLPDGSFEDWSVEEL 150
Query: 131 IVE 133
I++
Sbjct: 151 ILD 153
>gi|393218150|gb|EJD03638.1| RNA polymerase Rpb6 [Fomitiporia mediterranea MF3/22]
Length = 127
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 87/121 (71%), Gaps = 11/121 (9%)
Query: 24 EGAEEDAENINND-----DINGEPIETEEKEE------QEQKEAARKTSKYMTKYERARI 72
EGA+ + + N+ D+NGE ++E ++ + Q R T+ Y+TKYERAR+
Sbjct: 7 EGAQVNGDVTANEVDHEQDMNGEAAGSQEAQQPLPIQGERQPNKVRITTPYLTKYERARV 66
Query: 73 LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
LGTRALQISMNAPV+V+L+GETD L+IA+KEL +RKIP IRRYLPDGS+EDW V ELI
Sbjct: 67 LGTRALQISMNAPVLVQLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDWSVAELIS 126
Query: 133 E 133
E
Sbjct: 127 E 127
>gi|291240385|ref|XP_002740094.1| PREDICTED: DNA directed RNA polymerase II polypeptide F-like
[Saccoglossus kowalevskii]
Length = 131
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 73/81 (90%), Gaps = 1/81 (1%)
Query: 54 KEAARK-TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 112
+EA RK T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL+ RKIP
Sbjct: 49 QEAQRKITTPYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKVRKIPII 108
Query: 113 IRRYLPDGSYEDWGVDELIVE 133
IRRY+PDGS+EDWG+DELI++
Sbjct: 109 IRRYMPDGSHEDWGIDELIID 129
>gi|119189661|ref|XP_001245437.1| hypothetical protein CIMG_04878 [Coccidioides immitis RS]
Length = 142
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 99/139 (71%), Gaps = 15/139 (10%)
Query: 5 DYNDLD-MGYEDEPPE-------PE----IEEGAEEDAENINNDDINGEPIETEEKEEQE 52
D+ D D G++ EPPE PE E+ AEE A + N D G+P+ +++E++
Sbjct: 7 DHEDRDETGFDYEPPEYDYIDNEPEDYVSPEQEAEEGAYAVLNGD--GQPVMLQQREKKV 64
Query: 53 QKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 112
+ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL+IA+KEL ++KIP
Sbjct: 65 PNDQ-RTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLI 123
Query: 113 IRRYLPDGSYEDWGVDELI 131
+RRYLPDG YEDW +EL+
Sbjct: 124 VRRYLPDGWYEDWTCEELL 142
>gi|195054236|ref|XP_001994032.1| GH17834 [Drosophila grimshawi]
gi|193895902|gb|EDV94768.1| GH17834 [Drosophila grimshawi]
Length = 131
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP IR
Sbjct: 51 KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIR 110
Query: 115 RYLPDGSYEDWGVDELIVEDS 135
RYLPD SYEDW +DEL++ D+
Sbjct: 111 RYLPDHSYEDWSIDELVMVDN 131
>gi|156354426|ref|XP_001623395.1| predicted protein [Nematostella vectensis]
gi|156210090|gb|EDO31295.1| predicted protein [Nematostella vectensis]
Length = 71
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/71 (85%), Positives = 66/71 (92%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
MTKYERAR+LGTRALQISM APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPDGS+E
Sbjct: 1 MTKYERARVLGTRALQISMGAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSHE 60
Query: 124 DWGVDELIVED 134
DWG+DELIV D
Sbjct: 61 DWGIDELIVTD 71
>gi|380487611|emb|CCF37926.1| RNA polymerase Rpb6 [Colletotrichum higginsianum]
Length = 153
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 88/116 (75%), Gaps = 11/116 (9%)
Query: 24 EGAEEDAENINNDDINGEPIET------EEKEEQEQK--EAARKTSKYMTKYERARILGT 75
EG EE+A+N+ ++G+P EK +++K + R T+ YMTKYERARILGT
Sbjct: 40 EGDEEEADNVV---VSGDPSAAANSGKGNEKSHRDKKIPDDQRTTTPYMTKYERARILGT 96
Query: 76 RALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
RALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+PDG YEDW +EL+
Sbjct: 97 RALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYEDWTCEELL 152
>gi|114050977|ref|NP_001040147.1| DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori]
gi|87248209|gb|ABD36157.1| DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori]
Length = 132
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 70/80 (87%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T++YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ KIP IR
Sbjct: 52 KSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHGKIPIIIR 111
Query: 115 RYLPDGSYEDWGVDELIVED 134
RYLPD SYEDW +DELI+ D
Sbjct: 112 RYLPDHSYEDWSIDELIIID 131
>gi|121702763|ref|XP_001269646.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus clavatus NRRL 1]
gi|119397789|gb|EAW08220.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus clavatus NRRL 1]
Length = 161
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 94/148 (63%), Gaps = 21/148 (14%)
Query: 5 DYNDLDMGYEDEPPE----PEIEEGAEEDAENINNDD-----------INGEPIETEEKE 49
DY + ++D PE PE E AE A+ +D ++G+P +
Sbjct: 14 DYEPAEEVFDDHEPEDFINPEDIEAAEGGADGYGDDSYAPAVNGDRVVVSGDPSAGYSGK 73
Query: 50 EQEQKEAA------RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE 103
EQ A RKT+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IAMKE
Sbjct: 74 VVEQARAKKIPNEERKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAMKE 133
Query: 104 LRERKIPFTIRRYLPDGSYEDWGVDELI 131
L ++KIP +RRYLPDG+YEDW +EL+
Sbjct: 134 LNQKKIPLIVRRYLPDGTYEDWTCEELL 161
>gi|390604614|gb|EIN14005.1| subunit common to RNA polymerase I, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 144
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 83/123 (67%), Gaps = 12/123 (9%)
Query: 23 EEGAEEDAENINN-----DDINGEPIETEEK-------EEQEQKEAARKTSKYMTKYERA 70
E G + DA +N D +NG+ + E + + Q R T+ Y+TKYERA
Sbjct: 22 EAGQDADANGVNGMDHEQDGMNGDGTQQESGPHAPAGIQGERQPNKVRVTTPYLTKYERA 81
Query: 71 RILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 130
RILGTRALQISMNAPV+V L+GETD L+IA+KEL +RKIP IRR+LPDGS+EDW V EL
Sbjct: 82 RILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRFLPDGSFEDWSVSEL 141
Query: 131 IVE 133
I E
Sbjct: 142 ITE 144
>gi|346327285|gb|EGX96881.1| DNA-directed RNA polymerases I [Cordyceps militaris CM01]
Length = 153
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 91/125 (72%), Gaps = 12/125 (9%)
Query: 19 EPEIEEGAE-----EDAENINNDDINGEP-----IETEEKEEQEQK--EAARKTSKYMTK 66
EPE EG + E+ E+ +N ++G+P +K +++K + R T+ YMTK
Sbjct: 28 EPEAGEGDDDQDQLENGEDQDNIVVSGDPSAAANASRADKSSKDKKIPDEDRNTTPYMTK 87
Query: 67 YERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWG 126
YERARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRYLPDG YEDW
Sbjct: 88 YERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPDGYYEDWT 147
Query: 127 VDELI 131
+EL+
Sbjct: 148 CEELL 152
>gi|367027080|ref|XP_003662824.1| hypothetical protein MYCTH_2138933 [Myceliophthora thermophila ATCC
42464]
gi|347010093|gb|AEO57579.1| hypothetical protein MYCTH_2138933 [Myceliophthora thermophila ATCC
42464]
Length = 159
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 15/138 (10%)
Query: 8 DLDMGYEDEPPEP----EIEEGAEEDAENINNDDI--NGEPIET------EEKEEQEQK- 54
D D YE EP EP E AE+D E+ + D + +G+P T EK +++K
Sbjct: 22 DPDEYYEPEP-EPADEDEAAREAEQDGEHQDADHVIASGDPNATANVGKGSEKSHKDKKI 80
Query: 55 -EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 113
R T+ +MTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +
Sbjct: 81 PNDQRTTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIV 140
Query: 114 RRYLPDGSYEDWGVDELI 131
RRYLPDG YEDW +EL+
Sbjct: 141 RRYLPDGYYEDWTCEELL 158
>gi|70990832|ref|XP_750265.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus fumigatus Af293]
gi|66847897|gb|EAL88227.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus fumigatus Af293]
Length = 161
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 17/129 (13%)
Query: 20 PEIEEGAEEDAENINNDD-----------INGEPIETEEKEEQEQKEAA------RKTSK 62
PE EGAE A+ +D ++G+P + EQ A RKT+
Sbjct: 33 PEDLEGAEGGADGYGDDHYTPAVNGDRIVVSGDPSAGYSGKVVEQARAKKIPNEERKTTP 92
Query: 63 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA+KEL ++KIP +RRYLPDG+Y
Sbjct: 93 YMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPDGTY 152
Query: 123 EDWGVDELI 131
EDW +EL+
Sbjct: 153 EDWTCEELL 161
>gi|430813095|emb|CCJ29538.1| unnamed protein product [Pneumocystis jirovecii]
Length = 161
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 68/76 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYE+ARILGTR+LQISMNAPV+V+LEGETDPL+IAMKEL ++KIP +RRYL
Sbjct: 86 RMTTPYMTKYEKARILGTRSLQISMNAPVLVDLEGETDPLQIAMKELSQKKIPLLVRRYL 145
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDW V ELI E
Sbjct: 146 PDGSYEDWAVSELITE 161
>gi|340379028|ref|XP_003388029.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Amphimedon queenslandica]
Length = 129
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 72/88 (81%)
Query: 46 EEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR 105
+ +EE R T+ YMTKYERAR+LGTRALQISM APVMVELEGETDPL+IAMKEL+
Sbjct: 42 QTEEEHAIPSEQRTTTPYMTKYERARVLGTRALQISMGAPVMVELEGETDPLKIAMKELK 101
Query: 106 ERKIPFTIRRYLPDGSYEDWGVDELIVE 133
+K+P IRR+LP+ SYEDW VDELI++
Sbjct: 102 AKKVPIIIRRFLPNSSYEDWAVDELIID 129
>gi|336469566|gb|EGO57728.1| DNA-directed RNA polymerases I [Neurospora tetrasperma FGSC 2508]
gi|350290786|gb|EGZ72000.1| DNA-directed RNA polymerases I [Neurospora tetrasperma FGSC 2509]
Length = 160
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 84/112 (75%), Gaps = 8/112 (7%)
Query: 28 EDAENINNDDINGEPIET------EEKEEQEQK--EAARKTSKYMTKYERARILGTRALQ 79
++AEN NN +G+P EK +++K R T+ YMTKYE+ARILGTRALQ
Sbjct: 48 DEAENDNNIVTSGDPSAAANAGKGNEKSHKDKKIPNDQRSTTPYMTKYEKARILGTRALQ 107
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
ISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+PDG YEDW +EL+
Sbjct: 108 ISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYEDWTCEELL 159
>gi|452820688|gb|EME27727.1| DNA-directed RNA Polymerase II subunit F [Galdieria sulphuraria]
Length = 144
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 69/74 (93%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T++++TKYERA+ILGTRALQIS+ APVMV+LEGETDPLEIA KELRERKIP TIRRYL
Sbjct: 70 RITTRFLTKYERAKILGTRALQISLGAPVMVDLEGETDPLEIAQKELRERKIPITIRRYL 129
Query: 118 PDGSYEDWGVDELI 131
PDG++EDW VDEL+
Sbjct: 130 PDGTFEDWNVDELL 143
>gi|336273668|ref|XP_003351588.1| hypothetical protein SMAC_00129 [Sordaria macrospora k-hell]
gi|380095868|emb|CCC05914.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 160
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 85/112 (75%), Gaps = 8/112 (7%)
Query: 28 EDAENINNDDINGEPIET------EEKEEQEQK--EAARKTSKYMTKYERARILGTRALQ 79
++AEN NN +G+P EK +++K R+T+ YMTKYE+ARILGTRALQ
Sbjct: 48 DEAENDNNIVTSGDPNAAANAGKGNEKSHKDKKIPNDQRQTTPYMTKYEKARILGTRALQ 107
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
ISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+PDG YEDW +EL+
Sbjct: 108 ISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGFYEDWTCEELL 159
>gi|170593167|ref|XP_001901336.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Brugia malayi]
gi|158591403|gb|EDP30016.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Brugia malayi]
gi|402594257|gb|EJW88183.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 128
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 91/127 (71%), Gaps = 8/127 (6%)
Query: 14 EDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQ----EQKEAA--RKTSKYMTKY 67
EDE E E+E D E + DD++ EP E + + Q +K A+ R T+ +MTKY
Sbjct: 3 EDEDYEGEMEADDFGDEEQM--DDLDLEPAEDDTERIQVVEGSEKTASTERVTTPFMTKY 60
Query: 68 ERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGV 127
ERARILGTRALQI+M APVMVELEGETDPLEIA KEL+ +KIP +RRYLPDGS+EDW V
Sbjct: 61 ERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVRRYLPDGSFEDWSV 120
Query: 128 DELIVED 134
DEL V D
Sbjct: 121 DELDVTD 127
>gi|408398977|gb|EKJ78102.1| hypothetical protein FPSE_01563 [Fusarium pseudograminearum CS3096]
Length = 201
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 104/152 (68%), Gaps = 19/152 (12%)
Query: 1 MADEDYNDL------DMGYEDEPP----EPEIEEGAEEDAENINNDDIN-GEP------I 43
M+D D D+ D YEDE +PE E E EN +++ IN G+P +
Sbjct: 1 MSDFDEGDVAGAGGDDAMYEDEEINDYYDPEPAEDGENQQENQDDNIINSGDPSAIANAV 60
Query: 44 ETEEKEEQEQK--EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM 101
+ ++ +++K E+ R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+
Sbjct: 61 KGGDRLLKDKKIPESERTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAI 120
Query: 102 KELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
KE+RE+KIP +RRY+PDG YEDW +EL+ E
Sbjct: 121 KEMREKKIPLIVRRYMPDGYYEDWTCEELLHE 152
>gi|119496755|ref|XP_001265151.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Neosartorya fischeri NRRL 181]
gi|119413313|gb|EAW23254.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Neosartorya fischeri NRRL 181]
Length = 161
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 17/129 (13%)
Query: 20 PEIEEGAEEDAENINNDD-----------INGEPIETEEKEEQEQKEAA------RKTSK 62
PE EGAE A+ +D ++G+P + EQ A RKT+
Sbjct: 33 PEDLEGAEGGADGYADDHYTPAVNGDRIVVSGDPSAGYSGKVVEQARAKKIPNEERKTTP 92
Query: 63 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA+KEL ++KIP +RRYLPDG+Y
Sbjct: 93 YMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPDGTY 152
Query: 123 EDWGVDELI 131
EDW +EL+
Sbjct: 153 EDWTCEELL 161
>gi|449298782|gb|EMC94797.1| hypothetical protein BAUCODRAFT_36057 [Baudoinia compniacensis UAMH
10762]
Length = 171
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 90/140 (64%), Gaps = 11/140 (7%)
Query: 4 EDYNDLDMGYE--------DEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKE 55
EDYN D + D P + + + +N N ++G+ + + K+
Sbjct: 32 EDYNADDFAAQQNGEGMDVDGQPNGQAHLDSTDYTQNAQNVVVSGDSHHDNTVKGVKSKK 91
Query: 56 AA---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 112
A R T+ YMTKYERAR+LGTRALQISMNAPV+V++EGETDPL+IA+KELRE+K+P
Sbjct: 92 IAADKRTTTPYMTKYERARVLGTRALQISMNAPVLVDVEGETDPLQIAIKELREKKVPLV 151
Query: 113 IRRYLPDGSYEDWGVDELIV 132
+RRYLPDG YEDW +ELI
Sbjct: 152 VRRYLPDGWYEDWTCEELIT 171
>gi|393911585|gb|EJD76374.1| hypothetical protein LOAG_16668 [Loa loa]
Length = 128
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%), Gaps = 8/127 (6%)
Query: 14 EDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQ----EQKEAA--RKTSKYMTKY 67
EDE E E++ A+E + DD++ EP E + + Q +K A+ R T+ +MTKY
Sbjct: 3 EDEDYEGELD--ADEFGDEEQMDDLDLEPAEDDAERIQVVEGTEKTASTERVTTPFMTKY 60
Query: 68 ERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGV 127
ERARILGTRALQI+M APVMVELEGETDPLEIA KEL+ +KIP +RRYLPDGS+EDW V
Sbjct: 61 ERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVRRYLPDGSFEDWSV 120
Query: 128 DELIVED 134
DEL V D
Sbjct: 121 DELDVTD 127
>gi|164428772|ref|XP_001728485.1| DNA-directed RNA polymerases I [Neurospora crassa OR74A]
gi|157072273|gb|EDO65394.1| DNA-directed RNA polymerases I [Neurospora crassa OR74A]
Length = 160
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 84/112 (75%), Gaps = 8/112 (7%)
Query: 28 EDAENINNDDINGEPIET------EEKEEQEQK--EAARKTSKYMTKYERARILGTRALQ 79
++AEN NN +G+P EK +++K R T+ YMTKYE+ARILGTRALQ
Sbjct: 48 DEAENDNNIVTSGDPNAAANAGKGNEKSHKDKKIPNDQRSTTPYMTKYEKARILGTRALQ 107
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
ISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+PDG YEDW +EL+
Sbjct: 108 ISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYEDWTCEELL 159
>gi|310793050|gb|EFQ28511.1| RNA polymerase Rpb6 [Glomerella graminicola M1.001]
Length = 152
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 86/114 (75%), Gaps = 11/114 (9%)
Query: 26 AEEDAENINNDDINGEPIET------EEKEEQEQK--EAARKTSKYMTKYERARILGTRA 77
+EDA+N+ ++G+P EK +++K + R T+ YMTKYERARILGTRA
Sbjct: 41 GDEDADNVV---VSGDPSAAANAGKGNEKSHRDKKIPDDQRTTTPYMTKYERARILGTRA 97
Query: 78 LQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
LQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+PDG YEDW +EL+
Sbjct: 98 LQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYEDWTCEELL 151
>gi|336376971|gb|EGO05306.1| hypothetical protein SERLA73DRAFT_174398 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390020|gb|EGO31163.1| hypothetical protein SERLADRAFT_455900 [Serpula lacrymans var.
lacrymans S7.9]
Length = 170
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 78/112 (69%), Gaps = 3/112 (2%)
Query: 25 GAEEDAENINNDDIN--GEPIETEEKEEQE-QKEAARKTSKYMTKYERARILGTRALQIS 81
G + D E N D+ EP T E Q R T+ Y+TKYERARILGTRALQIS
Sbjct: 59 GTDHDQEMTNGDEGTQPHEPSTTGAGMHGERQPNKVRVTTPYLTKYERARILGTRALQIS 118
Query: 82 MNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
MNAPV+V L+GETD L+IA+KEL +RKIP IRRYLPDGS+EDW V ELI E
Sbjct: 119 MNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDWSVSELISE 170
>gi|159130739|gb|EDP55852.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus fumigatus A1163]
Length = 161
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 17/129 (13%)
Query: 20 PEIEEGAEEDAENINNDD-----------INGEPIETEEKEEQEQKEAA------RKTSK 62
PE EGAE A+ +D ++G+P + EQ A RKT+
Sbjct: 33 PEDLEGAEGGADGYGDDHYTPAVNGDRIVVSGDPSAGYLGKVVEQARAKKIPNEERKTTP 92
Query: 63 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA+KEL ++KIP +RRYLPDG+Y
Sbjct: 93 YMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPDGTY 152
Query: 123 EDWGVDELI 131
EDW +EL+
Sbjct: 153 EDWTCEELL 161
>gi|238486558|ref|XP_002374517.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus flavus NRRL3357]
gi|317144162|ref|XP_003189570.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Aspergillus oryzae RIB40]
gi|220699396|gb|EED55735.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus flavus NRRL3357]
Length = 159
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 97/152 (63%), Gaps = 22/152 (14%)
Query: 2 ADEDYNDLDMG--YEDEPPE----PE-IE--EGAEEDAENINNDDINGEPIET------- 45
DED D D G Y+D PE PE IE EGAE E+ +NG+ +
Sbjct: 8 GDEDNYDFDAGQDYDDNEPEDFLNPEDIEGVEGAEAYGEDHYTPAVNGDRVVVSGDPSAG 67
Query: 46 ------EEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEI 99
E+ E++ R T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+I
Sbjct: 68 YSGKVMEQVRERKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQI 127
Query: 100 AMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
A+KEL ++KIP +RRYLPDG YEDW +EL+
Sbjct: 128 AIKELNQKKIPLIVRRYLPDGWYEDWTCEELL 159
>gi|66803172|ref|XP_635429.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74851598|sp|Q54FA8.1|RPAB2_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|60463771|gb|EAL61949.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 133
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 68/75 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT++YMTKYERAR+LG+RALQISMNAP+MVELEGETDPL+IA KELR +KIP IRR+L
Sbjct: 59 RKTTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFL 118
Query: 118 PDGSYEDWGVDELIV 132
P+G YEDW VDEL +
Sbjct: 119 PNGMYEDWSVDELSI 133
>gi|340905234|gb|EGS17602.1| hypothetical protein CTHT_0069410 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 158
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 67/74 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ +MTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRYL
Sbjct: 84 RTTTPFMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYL 143
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 144 PDGYYEDWTCEELL 157
>gi|407923999|gb|EKG17060.1| RNA polymerase subunit omega/K/RPABC2 [Macrophomina phaseolina MS6]
Length = 160
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 66/74 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQISMNAP +V+LEGETDPL+IA+KELRE+KIP +RRYL
Sbjct: 87 RTTTPYMTKYERARVLGTRALQISMNAPALVDLEGETDPLQIALKELREKKIPLVVRRYL 146
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 147 PDGFYEDWTCEELL 160
>gi|406858817|gb|EKD11904.1| DNA-directed RNA polymerases I, II, and III [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 167
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 67/74 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+
Sbjct: 93 RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYM 152
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 153 PDGMYEDWTCEELL 166
>gi|302695611|ref|XP_003037484.1| RNA polymerase Rpb6 [Schizophyllum commune H4-8]
gi|300111181|gb|EFJ02582.1| RNA polymerase Rpb6, partial [Schizophyllum commune H4-8]
Length = 176
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 73/93 (78%), Gaps = 2/93 (2%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
+P E E Q KE R T+ Y+TKYERARILGTRALQISMNAPV+V L+GETD L+IA
Sbjct: 86 KPNVDEHGERQPNKE--RVTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIA 143
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
+KEL +RKIP IRRYLPDGS+EDW V ELI +
Sbjct: 144 IKELSQRKIPLIIRRYLPDGSFEDWSVSELITD 176
>gi|440636814|gb|ELR06733.1| hypothetical protein GMDG_00350 [Geomyces destructans 20631-21]
Length = 163
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 81/101 (80%), Gaps = 6/101 (5%)
Query: 38 INGEP----IETEEKEEQEQKEA--ARKTSKYMTKYERARILGTRALQISMNAPVMVELE 91
I+G+P + ++K +++K A R T+ YMTKYERARILGTRALQISMNAPV+V+LE
Sbjct: 63 ISGDPSAGAAKGKDKAPKDKKIANDQRTTTPYMTKYERARILGTRALQISMNAPVLVDLE 122
Query: 92 GETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
GETDPL+IA+KELRE+KIP +RRY+PDG YEDW +EL+
Sbjct: 123 GETDPLQIAIKELREKKIPLIVRRYMPDGWYEDWTCEELLT 163
>gi|392578277|gb|EIW71405.1| hypothetical protein TREMEDRAFT_60336 [Tremella mesenterica DSM
1558]
Length = 147
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 83/113 (73%), Gaps = 7/113 (6%)
Query: 25 GAEEDAENINNDDINGEPIETEEKE---EQEQKEAARKTSKYMTKYERARILGTRALQIS 81
G E D +NI I P E E ++ + + R T+ YMTKYERAR+LGTRALQIS
Sbjct: 39 GNEVDPDNI----IESNPPEGEMRQRTGKAAKPNETRVTTPYMTKYERARVLGTRALQIS 94
Query: 82 MNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MNAPV+V +EGETDPLEIA+KEL ++KIP IRRYLPD S+EDW V+ELIV++
Sbjct: 95 MNAPVLVPVEGETDPLEIALKELAQKKIPLVIRRYLPDNSFEDWKVEELIVQE 147
>gi|440296096|gb|ELP88937.1| DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative
[Entamoeba invadens IP1]
Length = 125
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
E +E K R T+K+MTKYE+AR+LGTRALQISMNAPV V L G TDPL+IAM+EL+E+K
Sbjct: 41 ETKEIKGNDRTTTKFMTKYEKARVLGTRALQISMNAPVFVNLNGMTDPLQIAMEELKEKK 100
Query: 109 IPFTIRRYLPDGSYEDWGVDELIVE 133
IPF IRR LP+GSYEDW + ELI++
Sbjct: 101 IPFIIRRRLPNGSYEDWKISELIID 125
>gi|328767393|gb|EGF77443.1| hypothetical protein BATDEDRAFT_91671 [Batrachochytrium
dendrobatidis JAM81]
Length = 148
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 67/74 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYE+ARILGTRALQISMNAPVMV+L GE+DPL+IAMKELRERK+P +RR++
Sbjct: 72 RMTTPYMTKYEKARILGTRALQISMNAPVMVDLTGESDPLQIAMKELRERKVPLMVRRFM 131
Query: 118 PDGSYEDWGVDELI 131
PDGS+EDW V ELI
Sbjct: 132 PDGSWEDWSVQELI 145
>gi|398412102|ref|XP_003857381.1| hypothetical protein MYCGRDRAFT_33005, partial [Zymoseptoria
tritici IPO323]
gi|339477266|gb|EGP92357.1| hypothetical protein MYCGRDRAFT_33005 [Zymoseptoria tritici IPO323]
Length = 108
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
Query: 34 NNDDINGEP-IETEEKEEQEQKEAA--RKTSKYMTKYERARILGTRALQISMNAPVMVEL 90
NN +GEP + K + +K AA R T+ YMTKYERAR+LGTRALQISM APV+V++
Sbjct: 8 NNVVASGEPGLVNAVKTIKSKKIAAEKRTTTPYMTKYERARVLGTRALQISMGAPVLVDV 67
Query: 91 EGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
E ETDPL+IA+KELRE+KIP +RRYLPDG YEDW +EL+
Sbjct: 68 ESETDPLQIALKELREKKIPLVVRRYLPDGFYEDWTCEELL 108
>gi|449550917|gb|EMD41881.1| hypothetical protein CERSUDRAFT_110440 [Ceriporiopsis subvermispora
B]
Length = 170
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 87/131 (66%), Gaps = 19/131 (14%)
Query: 20 PEIEEGAEEDAENINN-DDING----EPIETEEKEEQEQKEAA--------------RKT 60
P+ E G E + +N + +NG + E E Q+Q++AA R T
Sbjct: 38 PDGEAGEAEGSGQVNGFEGVNGVEHDQDQEMANSEAQQQQDAASGAGLRGERQPNKVRIT 97
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
+ Y+TKYERAR+LGTRALQISMNAPV+V L+GETD L+IA+KEL +RKIP IRRYLPDG
Sbjct: 98 TPYLTKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDG 157
Query: 121 SYEDWGVDELI 131
S+EDW V ELI
Sbjct: 158 SFEDWSVSELI 168
>gi|353244095|emb|CCA75548.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
III [Piriformospora indica DSM 11827]
Length = 164
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 70/88 (79%)
Query: 46 EEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR 105
++ E + R T+ Y+TKYERARILGTRALQISMNAP++V EGETDPL+IA+KEL
Sbjct: 77 QQNNEPRKPNKVRITTPYLTKYERARILGTRALQISMNAPILVPAEGETDPLQIAIKELA 136
Query: 106 ERKIPFTIRRYLPDGSYEDWGVDELIVE 133
+RKIP IRRYLPDGS+EDW V ELI +
Sbjct: 137 QRKIPLVIRRYLPDGSFEDWSVSELICD 164
>gi|116192063|ref|XP_001221844.1| hypothetical protein CHGG_05749 [Chaetomium globosum CBS 148.51]
gi|88181662|gb|EAQ89130.1| hypothetical protein CHGG_05749 [Chaetomium globosum CBS 148.51]
Length = 160
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 67/74 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ +MTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRYL
Sbjct: 86 RTTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYL 145
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 146 PDGYYEDWSCEELL 159
>gi|384493039|gb|EIE83530.1| hypothetical protein RO3G_08235 [Rhizopus delemar RA 99-880]
Length = 98
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 75/93 (80%), Gaps = 2/93 (2%)
Query: 43 IETEEK--EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
IE EK EEQ R+T+ YMTKYE+ARILGTRALQIS+NAPVMVEL+GE+D L IA
Sbjct: 6 IEIIEKGTEEQSSPNKVRQTTPYMTKYEKARILGTRALQISLNAPVMVELDGESDALVIA 65
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
MKELRE+K+P +RR+LPD ++EDW V +LIVE
Sbjct: 66 MKELREKKVPLIVRRFLPDNTFEDWDVKDLIVE 98
>gi|367050762|ref|XP_003655760.1| hypothetical protein THITE_2119818 [Thielavia terrestris NRRL 8126]
gi|347003024|gb|AEO69424.1| hypothetical protein THITE_2119818 [Thielavia terrestris NRRL 8126]
Length = 167
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 67/74 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ +MTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRYL
Sbjct: 93 RTTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYL 152
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 153 PDGYYEDWTCEELL 166
>gi|392597744|gb|EIW87066.1| RNA polymerase Rpb6 [Coniophora puteana RWD-64-598 SS2]
Length = 113
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 8/99 (8%)
Query: 39 NGEPIETEEK------EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEG 92
NGE + E+ E Q KE R T+ Y+TKYERARILGTRALQISMNAPV+V L+G
Sbjct: 15 NGEAAQPEQSAVPTSGERQANKE--RITTPYLTKYERARILGTRALQISMNAPVLVPLDG 72
Query: 93 ETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
ETD L+IA+KEL +RKIP IRRYLPDGS+EDW V ELI
Sbjct: 73 ETDALQIAIKELSQRKIPLIIRRYLPDGSFEDWSVSELI 111
>gi|323454986|gb|EGB10855.1| hypothetical protein AURANDRAFT_8009, partial [Aureococcus
anophagefferens]
Length = 77
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 69/76 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T++YMTKYE+AR+LGTRALQISMNAPVMV++ GETDPL+IA KELRERKIP IRRYL
Sbjct: 2 RVTTRYMTKYEKARVLGTRALQISMNAPVMVDVAGETDPLKIANKELRERKIPLIIRRYL 61
Query: 118 PDGSYEDWGVDELIVE 133
PDGSYEDW + +LI++
Sbjct: 62 PDGSYEDWPIRDLIID 77
>gi|145229113|ref|XP_001388865.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Aspergillus niger CBS 513.88]
gi|134054964|emb|CAK36973.1| unnamed protein product [Aspergillus niger]
gi|350638035|gb|EHA26391.1| hypothetical protein ASPNIDRAFT_36183 [Aspergillus niger ATCC 1015]
gi|358372043|dbj|GAA88648.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus kawachii IFO 4308]
Length = 160
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 84/117 (71%), Gaps = 6/117 (5%)
Query: 21 EIEEGAEEDAENINNDDINGEPIE------TEEKEEQEQKEAARKTSKYMTKYERARILG 74
E EG+ A N N+ +G+P E+ E++ R+T+ YMTKYERAR+LG
Sbjct: 44 EYGEGSYAPAVNGNHIVASGDPNAGYAGKVMEQTREKKVPNDQRQTTPYMTKYERARVLG 103
Query: 75 TRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
TRALQISMNAPV+V+LEGETDPL+IA+KEL ++KIP +RRYLPDG YEDW +EL+
Sbjct: 104 TRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPDGWYEDWTCEELL 160
>gi|392571015|gb|EIW64187.1| RNA polymerase Rpb6 [Trametes versicolor FP-101664 SS1]
Length = 165
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
E+ ++ N + EP ++E+ Q R T+ Y+TKYERAR+LGTRALQISMNAPV+
Sbjct: 61 ENGQDAPNGEGAQEPAAAAPRDER-QPNKVRVTTPYLTKYERARVLGTRALQISMNAPVL 119
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
V L+GETD L+IA+KEL +RKIP IRRYLPDGS+EDW V ELI
Sbjct: 120 VPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDWSVSELI 163
>gi|315044053|ref|XP_003171402.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311343745|gb|EFR02948.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 161
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 82/108 (75%), Gaps = 2/108 (1%)
Query: 26 AEEDAENINNDDINGEPIETEEKEEQEQKEA--ARKTSKYMTKYERARILGTRALQISMN 83
A + EN + + +G+ +++E+K A R T+ YMTKYERAR+LGTRALQISMN
Sbjct: 54 ATTNGENADPNSSSGQGQGKTILQQREKKVANDQRTTTPYMTKYERARVLGTRALQISMN 113
Query: 84 APVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
AP++V+LEGETDPL+IA+KEL ++KIP IRRYLPDG YEDW +EL+
Sbjct: 114 APILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDGWYEDWTCEELL 161
>gi|299756146|ref|XP_001829127.2| subunit common to RNA polymerase I [Coprinopsis cinerea
okayama7#130]
gi|298411543|gb|EAU92762.2| subunit common to RNA polymerase I [Coprinopsis cinerea
okayama7#130]
Length = 163
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 69/85 (81%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
+ + Q R T+ Y+TKYERARILGTRALQISMNAPV+V L+GETD L+IA+KEL +RK
Sbjct: 79 QAERQPNKVRVTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRK 138
Query: 109 IPFTIRRYLPDGSYEDWGVDELIVE 133
IP IRRYLPDGS+EDW V ELI +
Sbjct: 139 IPLIIRRYLPDGSFEDWSVSELITD 163
>gi|296811616|ref|XP_002846146.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
gi|238843534|gb|EEQ33196.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
Length = 161
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 32 NINNDDINGEPIETEEKEEQEQKEAA-----RKTSKYMTKYERARILGTRALQISMNAPV 86
N N D N + + K +Q+E R T+ YMTKYERAR+LGTRALQISMNAP+
Sbjct: 57 NGQNSDPNASSGQGQGKTILQQREKKVANDQRTTTPYMTKYERARVLGTRALQISMNAPI 116
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
+V+LEGETDPL+IA+KEL ++KIP IRRYLPDG YEDW +EL+
Sbjct: 117 LVDLEGETDPLQIALKELNQKKIPLIIRRYLPDGWYEDWTCEELL 161
>gi|346971509|gb|EGY14961.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 149
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 67/74 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+
Sbjct: 75 RTTTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYM 134
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 135 PDGYYEDWTCEELL 148
>gi|302406322|ref|XP_003000997.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261360255|gb|EEY22683.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
Length = 149
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 67/74 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+
Sbjct: 75 RTTTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYM 134
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 135 PDGYYEDWTCEELL 148
>gi|342872060|gb|EGU74463.1| hypothetical protein FOXB_15030 [Fusarium oxysporum Fo5176]
Length = 158
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 67/74 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+KE+RE+KIP +RRY+
Sbjct: 80 RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRYM 139
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 140 PDGYYEDWTCEELL 153
>gi|401887349|gb|EJT51339.1| DNA-directed RNA polymerases I, II, and III polypeptide
[Trichosporon asahii var. asahii CBS 2479]
gi|406696322|gb|EKC99613.1| DNA-directed RNA polymerases I, II, and III polypeptide
[Trichosporon asahii var. asahii CBS 8904]
Length = 136
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 68/78 (87%)
Query: 57 ARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R T+ YMTKYERAR+LGTRALQISMNAPV+V +EGETDPLEIA+KEL +KIP IRRY
Sbjct: 59 VRITTPYMTKYERARVLGTRALQISMNAPVLVPVEGETDPLEIALKELAAKKIPLVIRRY 118
Query: 117 LPDGSYEDWGVDELIVED 134
LPD S+EDW V+ELIV++
Sbjct: 119 LPDNSFEDWKVEELIVQE 136
>gi|403411425|emb|CCL98125.1| predicted protein [Fibroporia radiculosa]
Length = 170
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 67/81 (82%)
Query: 53 QKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 112
Q R T+ Y+TKYERAR+LGTRALQISMNAPV+V L+GETD L+IA+KEL +RKIP
Sbjct: 90 QPNKVRVTTPYLTKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLI 149
Query: 113 IRRYLPDGSYEDWGVDELIVE 133
IRRYLPDGS+EDW V ELI +
Sbjct: 150 IRRYLPDGSFEDWSVSELITD 170
>gi|322784320|gb|EFZ11308.1| hypothetical protein SINV_10192 [Solenopsis invicta]
Length = 149
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 73/101 (72%), Gaps = 19/101 (18%)
Query: 54 KEAARKTSKYMTKY-------------------ERARILGTRALQISMNAPVMVELEGET 94
+ + R T++YMTKY ERAR+LGTRALQI+M APVMVELEGET
Sbjct: 49 QRSKRITTRYMTKYTVCLEDGIASQIPNISILYERARVLGTRALQIAMCAPVMVELEGET 108
Query: 95 DPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
DPL+IAMKEL++RKIP IRRYLPD SYEDWG+DELI+ D
Sbjct: 109 DPLQIAMKELKQRKIPIIIRRYLPDNSYEDWGIDELIIIDH 149
>gi|327296802|ref|XP_003233095.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|326464401|gb|EGD89854.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 161
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 82/112 (73%), Gaps = 9/112 (8%)
Query: 29 DAENINNDDINGEPIETEEKEE------QEQKEAA---RKTSKYMTKYERARILGTRALQ 79
D + + + NG+P + + + Q +K+ A R T+ YMTKYERAR+LGTRALQ
Sbjct: 50 DGQPVTTNGENGDPNASSGQGQGKTILQQREKKVANDQRTTTPYMTKYERARVLGTRALQ 109
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
ISMNAP++V+LEGETDPL+IA+KEL ++KIP IRRYLPDG YEDW +EL+
Sbjct: 110 ISMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDGWYEDWTCEELL 161
>gi|452847500|gb|EME49432.1| hypothetical protein DOTSEDRAFT_68260 [Dothistroma septosporum
NZE10]
Length = 165
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 2/131 (1%)
Query: 3 DEDYN-DLDMGYEDEPPEPEIEEGAEEDAENI-NNDDINGEPIETEEKEEQEQKEAARKT 60
D D N D+D+ D ++ D N+ + D + P + + ++ + R T
Sbjct: 35 DADANGDMDVDPNDAAQNAQLNSTDYTDPNNVVTSGDPSANPNTVKSVKSKKISQEKRTT 94
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
+ YMTKYERAR+LGTRALQISM APV+V++E ETDPL+IA+KELRE+KIP +RRYLPDG
Sbjct: 95 TPYMTKYERARVLGTRALQISMGAPVLVDVESETDPLQIALKELREKKIPLVVRRYLPDG 154
Query: 121 SYEDWGVDELI 131
YEDW +EL+
Sbjct: 155 YYEDWTCEELL 165
>gi|326481266|gb|EGE05276.1| hypothetical protein TEQG_04432 [Trichophyton equinum CBS 127.97]
Length = 155
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 84/112 (75%), Gaps = 9/112 (8%)
Query: 29 DAENINNDDINGEP-IETEEKE-----EQEQKEAA---RKTSKYMTKYERARILGTRALQ 79
D + + + NG+P + + + + +Q +K+ A R T+ YMTKYERAR+LGTRALQ
Sbjct: 44 DGQPVTTNGENGDPNVSSGQGQGKTILQQREKKVANDQRTTTPYMTKYERARVLGTRALQ 103
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
ISMNAP++V+LEGETDPL+IA+KEL ++KIP IRRYLPDG YEDW +EL+
Sbjct: 104 ISMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDGWYEDWTCEELL 155
>gi|326476037|gb|EGE00047.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
Length = 161
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 72/85 (84%), Gaps = 3/85 (3%)
Query: 50 EQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE 106
+Q +K+ A R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL+IA+KEL +
Sbjct: 77 QQREKKVANDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQ 136
Query: 107 RKIPFTIRRYLPDGSYEDWGVDELI 131
+KIP IRRYLPDG YEDW +EL+
Sbjct: 137 KKIPLIIRRYLPDGWYEDWTCEELL 161
>gi|426201144|gb|EKV51067.1| hypothetical protein AGABI2DRAFT_61363 [Agaricus bisporus var.
bisporus H97]
Length = 99
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 68/83 (81%)
Query: 51 QEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 110
+ Q R T+ Y+TKYERARILGTRALQISMNAPV+V L+GETD L+IA+KEL +RKIP
Sbjct: 17 ERQPNKVRVTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIP 76
Query: 111 FTIRRYLPDGSYEDWGVDELIVE 133
IRRYLPDGS+EDW V ELI +
Sbjct: 77 LIIRRYLPDGSFEDWSVSELITD 99
>gi|255941144|ref|XP_002561341.1| Pc16g10310 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585964|emb|CAP93701.1| Pc16g10310 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 153
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 71/86 (82%)
Query: 46 EEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR 105
E+ E++ R T+ Y+TKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IAMKEL
Sbjct: 68 EQSREKKVPNDQRTTTPYLTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAMKELN 127
Query: 106 ERKIPFTIRRYLPDGSYEDWGVDELI 131
++KIP IRRYLPDG YEDW +EL+
Sbjct: 128 QKKIPLIIRRYLPDGWYEDWTCEELL 153
>gi|242803045|ref|XP_002484094.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces stipitatus ATCC 10500]
gi|218717439|gb|EED16860.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces stipitatus ATCC 10500]
Length = 162
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 95/160 (59%), Gaps = 33/160 (20%)
Query: 5 DYNDL---DMGYEDEPPEPEIEEGAEED-----------------AENINNDDINGEPI- 43
DY D D GY+ + EPE ++ ED AE++ D +NGE
Sbjct: 3 DYGDHEAEDTGYDYDGGEPEYDDNEPEDFLEPEDVEPEGDEAVHGAEDVYQDAVNGERTI 62
Query: 44 ------------ETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELE 91
E+ E++ R T+ YMTKYERAR+LGTRALQISMNAPV+V+LE
Sbjct: 63 ISGDPNAGGGRGVMEQPREKKIPNDQRSTTPYMTKYERARVLGTRALQISMNAPVLVDLE 122
Query: 92 GETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
GETDPL+IA+KEL ++KIP IRRYLPDG YEDW +EL+
Sbjct: 123 GETDPLQIAIKELNQKKIPLIIRRYLPDGYYEDWTCEELL 162
>gi|409083797|gb|EKM84154.1| hypothetical protein AGABI1DRAFT_31547 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 99
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 68/83 (81%)
Query: 51 QEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 110
+ Q R T+ Y+TKYERARILGTRALQISMNAPV+V L+GETD L+IA+KEL +RKIP
Sbjct: 17 ERQPNKVRITTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIP 76
Query: 111 FTIRRYLPDGSYEDWGVDELIVE 133
IRRYLPDGS+EDW V ELI +
Sbjct: 77 LIIRRYLPDGSFEDWSVSELITD 99
>gi|238587830|ref|XP_002391548.1| hypothetical protein MPER_09004 [Moniliophthora perniciosa FA553]
gi|215456356|gb|EEB92478.1| hypothetical protein MPER_09004 [Moniliophthora perniciosa FA553]
Length = 169
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 25 GAEEDAENINNDDINGEPIETE-EKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
G + D E N ++ P + E Q KE R T+ Y+TKYERARILGTRALQISMN
Sbjct: 62 GVDHDQEMANGEEPQEPPAQASILGERQPNKE--RITTPYLTKYERARILGTRALQISMN 119
Query: 84 APVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
APV+V L+GETD L+IA+KEL +RKIP IRRYLPDGS+EDW V ELI +
Sbjct: 120 APVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDWSVSELITD 169
>gi|425773051|gb|EKV11426.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Penicillium digitatum PHI26]
gi|425782176|gb|EKV20101.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Penicillium digitatum Pd1]
Length = 153
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%), Gaps = 9/119 (7%)
Query: 22 IEEGAE-EDAENINNDDI--NGEPIE------TEEKEEQEQKEAARKTSKYMTKYERARI 72
+E+G E ED N D++ +G+P E+ E++ R T+ Y+TKYERAR+
Sbjct: 35 VEDGIEGEDYPTTNGDNVVVSGDPNAGYAGKVMEQSREKKVPNDQRTTTPYLTKYERARV 94
Query: 73 LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
LGTRALQISMNAPV+V+LEGETDPL+IAM EL ++KIP IRRYLPDG YEDW +EL+
Sbjct: 95 LGTRALQISMNAPVLVDLEGETDPLQIAMMELNQKKIPLIIRRYLPDGWYEDWTCEELL 153
>gi|307108763|gb|EFN57002.1| hypothetical protein CHLNCDRAFT_21734 [Chlorella variabilis]
Length = 116
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 75/92 (81%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E ++Q Q E R T++Y+TKYE+AR+LGTRALQISMNAPVMVE+ ETDPLEIA
Sbjct: 22 EILEQGPGQQQAQAERPRITTRYLTKYEKARVLGTRALQISMNAPVMVEVGTETDPLEIA 81
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
KELRE+KIPF IRRYLPD S+EDW + ELI+
Sbjct: 82 YKELREKKIPFIIRRYLPDNSFEDWSLAELII 113
>gi|295672808|ref|XP_002796950.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282322|gb|EEH37888.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 165
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 79/105 (75%), Gaps = 3/105 (2%)
Query: 30 AENINNDDINGEPIETEEKEEQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPV 86
EN+ + D N + + +Q +K+ R T+ YMTKYERAR+LGTRALQISMNAP+
Sbjct: 61 TENVASGDPNAGASKGKVMLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPI 120
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
+V+LEGETDPL+IA+KEL ++KIP +RRYLPDG YEDW +EL+
Sbjct: 121 LVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 165
>gi|303322929|ref|XP_003071456.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240111158|gb|EER29311.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 158
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 99/154 (64%), Gaps = 29/154 (18%)
Query: 5 DYNDLD-MGYEDEPPE-------PE----IEEGAEEDAENINNDDINGEPIE-------- 44
D+ D D G++ EPPE PE E+ AEE A + N D G+P+
Sbjct: 7 DHEDRDETGFDYEPPEYDYIDNEPEDYVSPEQEAEEGAYAVLNGD--GQPVTPGANGDSA 64
Query: 45 --TEEKEEQEQKEAA-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPL 97
++ K +Q+E R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL
Sbjct: 65 AASKSKVMLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPL 124
Query: 98 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
+IA+KEL ++KIP +RRYLPDG YEDW +EL+
Sbjct: 125 QIALKELNQKKIPLIVRRYLPDGWYEDWTCEELL 158
>gi|261188394|ref|XP_002620612.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis SLH14081]
gi|239593212|gb|EEQ75793.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis SLH14081]
gi|239609354|gb|EEQ86341.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis ER-3]
Length = 162
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 93/151 (61%), Gaps = 29/151 (19%)
Query: 10 DMGYEDEPPE-------------PEIEEGAEEDA-------------ENINNDDINGEPI 43
D G++ EPPE PE E AE A ENI + D N
Sbjct: 12 DAGFDYEPPEYEYIDNEPEDFVEPEQTEHAEGYAIVNGDGQPVQNGEENIVSGDPNAGAS 71
Query: 44 ETEEKEEQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
+ + +Q +K+ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL+IA
Sbjct: 72 KGKVMLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIA 131
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
+KEL ++KIP +RRYLPDG YEDW +EL+
Sbjct: 132 LKELAQKKIPLIVRRYLPDGWYEDWTCEELL 162
>gi|320587906|gb|EFX00381.1| DNA-directed RNA polymerase and 3 subunit rpb6 [Grosmannia
clavigera kw1407]
Length = 164
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 67/74 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ ++TKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+K+P +RRYL
Sbjct: 90 RSTTPFLTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKVPLIVRRYL 149
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 150 PDGFYEDWTCEELL 163
>gi|393244461|gb|EJD51973.1| RNA polymerase Rpb6 [Auricularia delicata TFB-10046 SS5]
Length = 110
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 72/90 (80%)
Query: 44 ETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE 103
E +++ + Q + T+ Y+TKYERAR+LGTRALQISMNAPV+V LEGETD L+IA+KE
Sbjct: 21 EAKQQPAERQPNKVKITTPYLTKYERARVLGTRALQISMNAPVLVPLEGETDALQIAIKE 80
Query: 104 LRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
L ++KIP IRRYLPDGS+EDW + +LI E
Sbjct: 81 LSQKKIPLIIRRYLPDGSFEDWSIKDLITE 110
>gi|395334449|gb|EJF66825.1| RNA polymerase Rpb6 [Dichomitus squalens LYAD-421 SS1]
Length = 165
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 67/81 (82%)
Query: 51 QEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 110
+ Q R T+ Y+TKYERAR+LGTRALQISMNAPV+V L+GETD L+IA+KEL +RKIP
Sbjct: 83 ERQPNKVRVTTPYLTKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIP 142
Query: 111 FTIRRYLPDGSYEDWGVDELI 131
IRRYLPDGS+EDW V ELI
Sbjct: 143 LIIRRYLPDGSFEDWSVSELI 163
>gi|325092943|gb|EGC46253.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H88]
Length = 165
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 93/155 (60%), Gaps = 36/155 (23%)
Query: 10 DMGYEDEPP-------------EPEIEEGAEEDAENINNDDINGEPIETEEKE------- 49
D G++ EPP EPE E E +N D G+P++ E +
Sbjct: 14 DAGFDYEPPQYEYIDNEPEDYVEPEQTEHGENGYAIVNGD---GQPVQNGEGDVVSGDPN 70
Query: 50 ----------EQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDP 96
+Q +K+ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDP
Sbjct: 71 AGASKGKVMLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDP 130
Query: 97 LEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
L+IA+KEL ++KIP +RRYLPDG YEDW +EL+
Sbjct: 131 LQIALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 165
>gi|294900079|ref|XP_002776889.1| DNA-directed RNA polymerase subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239884090|gb|EER08705.1| DNA-directed RNA polymerase subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 138
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 80/109 (73%), Gaps = 3/109 (2%)
Query: 26 AEEDAENINNDDINGEPIETEEKEE---QEQKEAARKTSKYMTKYERARILGTRALQISM 82
A+E+ + D I + T+ K++ + E R+TS YMTKYERARI+GTRALQISM
Sbjct: 27 ADEEVAGGSGDVITSGRVPTQPKDDDFVAREAEGPRRTSPYMTKYERARIIGTRALQISM 86
Query: 83 NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
NAPVMV+ EGETDP+ IA KEL + IPF +RR+LPDG+YEDW V+EL+
Sbjct: 87 NAPVMVDTEGETDPMAIAEKELVAKVIPFIVRRFLPDGTYEDWKVEELM 135
>gi|226292518|gb|EEH47938.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb18]
Length = 165
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 91/152 (59%), Gaps = 30/152 (19%)
Query: 10 DMGYEDEPPEPE-----------------------IEEGAEEDAENINNDDINGEPIETE 46
D G++ EPPE E I G + N N + +G+P
Sbjct: 14 DAGFDYEPPEYEYIDNEPEDYIEPEQAEQGDQGYAIVNGNGQHIHNGNENSASGDPNAGA 73
Query: 47 EKE----EQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEI 99
K +Q +K+ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL+I
Sbjct: 74 SKGKVMLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQI 133
Query: 100 AMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
A+KEL ++KIP +RRYLPDG YEDW +EL+
Sbjct: 134 ALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 165
>gi|225680818|gb|EEH19102.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb03]
Length = 165
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 82/117 (70%), Gaps = 7/117 (5%)
Query: 22 IEEGAEEDAENINNDDINGEPIETEEKE----EQEQKEAA---RKTSKYMTKYERARILG 74
I G + N N + +G+P K +Q +K+ R T+ YMTKYERAR+LG
Sbjct: 49 IVNGNGQHIHNGNENAASGDPNAGASKGKVMLQQREKKVPNDQRTTTPYMTKYERARVLG 108
Query: 75 TRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
TRALQISMNAP++V+LEGETDPL+IA+KEL ++KIP +RRYLPDG YEDW +EL+
Sbjct: 109 TRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 165
>gi|389751166|gb|EIM92239.1| RNA polymerase Rpb6, partial [Stereum hirsutum FP-91666 SS1]
Length = 84
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 67/81 (82%)
Query: 51 QEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 110
+ Q R T+ Y+TKYERARILGTRALQISMNAP++V L+GETD L+IA+KEL +RKIP
Sbjct: 2 ERQPNKVRVTTPYLTKYERARILGTRALQISMNAPILVPLDGETDALQIAIKELSQRKIP 61
Query: 111 FTIRRYLPDGSYEDWGVDELI 131
IRRYLPDGS+EDW V ELI
Sbjct: 62 LIIRRYLPDGSFEDWSVSELI 82
>gi|154336273|ref|XP_001564372.1| putative DNA-directed RNA polymerase subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061407|emb|CAM38432.1| putative DNA-directed RNA polymerase subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 159
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS MTKYERAR+LGTRALQISMNAPV V LEGETDPL IA+KELRER+ P IRR L
Sbjct: 72 RVTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAIKELRERRTPLIIRRVL 131
Query: 118 PDGSYEDWGVDELIVE 133
PD +YEDW V EL+V+
Sbjct: 132 PDNTYEDWSVSELLVD 147
>gi|321261974|ref|XP_003195706.1| DNA-directed RNA polymerases I, II and III polypeptide
[Cryptococcus gattii WM276]
gi|317462180|gb|ADV23919.1| DNA-directed RNA polymerases I, II and III polypeptide, putative
[Cryptococcus gattii WM276]
Length = 149
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQISMNAPV+V +EGE+DPLEIA+KEL +KIP IRRYL
Sbjct: 73 RVTTPYMTKYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAAKKIPLVIRRYL 132
Query: 118 PDGSYEDWGVDELIVE 133
PD S+EDW V+ELIV+
Sbjct: 133 PDNSFEDWKVEELIVQ 148
>gi|453088806|gb|EMF16846.1| RNA polymerase Rpb6 [Mycosphaerella populorum SO2202]
Length = 126
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 65/74 (87%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQISM APV+V++E ETDPL+IA+KELRE+KIP +RRYL
Sbjct: 53 RTTTPYMTKYERARVLGTRALQISMGAPVLVDVESETDPLQIALKELREKKIPLVVRRYL 112
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 113 PDGYYEDWTCEELL 126
>gi|195568410|ref|XP_002102209.1| GD19782 [Drosophila simulans]
gi|194198136|gb|EDX11712.1| GD19782 [Drosophila simulans]
Length = 131
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 78/109 (71%), Gaps = 7/109 (6%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
EE+A+NI E I ++ R T+KYMTKYERAR+LGTRALQI+M AP+
Sbjct: 30 EEEADNI-------EIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPI 82
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
MVEL+GETDPL+IAMKEL+ +KIP R LPD SYEDW +DELI+ D+
Sbjct: 83 MVELDGETDPLQIAMKELKPKKIPLIFRPPLPDHSYEDWSIDELIMVDN 131
>gi|389630464|ref|XP_003712885.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|351645217|gb|EHA53078.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|440476364|gb|ELQ44972.1| DNA-directed RNA polymerases I [Magnaporthe oryzae Y34]
gi|440490438|gb|ELQ69995.1| DNA-directed RNA polymerases I [Magnaporthe oryzae P131]
Length = 151
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 66/74 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ +MTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KEL E+KIP IRRY+
Sbjct: 77 RTTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELAEKKIPLIIRRYM 136
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 137 PDGYYEDWTCEELL 150
>gi|58271020|ref|XP_572666.1| DNA-directed RNA polymerases I, II, and III polypeptide
[Cryptococcus neoformans var. neoformans JEC21]
gi|134114830|ref|XP_773713.1| hypothetical protein CNBH1680 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256341|gb|EAL19066.1| hypothetical protein CNBH1680 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228925|gb|AAW45359.1| DNA-directed RNA polymerases I, II, and III polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 148
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQISMNAPV+V +EGE+DPLEIA+KEL +KIP IRRYL
Sbjct: 72 RVTTPYMTKYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAAKKIPLVIRRYL 131
Query: 118 PDGSYEDWGVDELIVE 133
PD S+EDW V+ELIV+
Sbjct: 132 PDNSFEDWKVEELIVQ 147
>gi|405122336|gb|AFR97103.1| DNA-directed RNA polymerase I [Cryptococcus neoformans var. grubii
H99]
Length = 148
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQISMNAPV+V +EGE+DPLEIA+KEL +KIP IRRYL
Sbjct: 72 RVTTPYMTKYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAAKKIPLVIRRYL 131
Query: 118 PDGSYEDWGVDELIVED 134
PD S+EDW V+ELIV++
Sbjct: 132 PDNSFEDWKVEELIVQE 148
>gi|320033471|gb|EFW15419.1| DNA-directed RNA polymerase I [Coccidioides posadasii str.
Silveira]
gi|392868331|gb|EJB11472.1| DNA-directed RNA polymerase I [Coccidioides immitis RS]
Length = 167
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 66/74 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL+IA+KEL ++KIP +RRYL
Sbjct: 94 RTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIVRRYL 153
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 154 PDGWYEDWTCEELL 167
>gi|170084301|ref|XP_001873374.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650926|gb|EDR15166.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 65/74 (87%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ Y+TKYERARILGTRALQISMNAPV+V L+GETD L+IA+KEL +RKIP IRRYL
Sbjct: 13 RVTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYL 72
Query: 118 PDGSYEDWGVDELI 131
PDGS+EDW V ELI
Sbjct: 73 PDGSFEDWSVSELI 86
>gi|452989682|gb|EME89437.1| hypothetical protein MYCFIDRAFT_27771, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 124
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 86/123 (69%), Gaps = 4/123 (3%)
Query: 12 GYEDEPPEPEIEEGAEEDAENINNDDINGE-PIETEEKEEQEQKEA--ARKTSKYMTKYE 68
G + EP + ++ DA N NN +GE P K + +K A R T+ YMTKYE
Sbjct: 3 GEDGEPQQQQLNSTDYADA-NANNIVPSGEQPGANTVKGVKSKKIANEKRTTTPYMTKYE 61
Query: 69 RARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVD 128
RAR+LGTRALQIS+ APV+V++E ETDPL+IA+KELRE+KIP +RRYLPDG YEDW +
Sbjct: 62 RARVLGTRALQISLGAPVLVDVESETDPLQIALKELREKKIPLVVRRYLPDGYYEDWTCE 121
Query: 129 ELI 131
EL+
Sbjct: 122 ELL 124
>gi|345564745|gb|EGX47705.1| hypothetical protein AOL_s00083g213 [Arthrobotrys oligospora ATCC
24927]
Length = 170
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 65/74 (87%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQISMNAPV+V+ EG+TDPL+IA+KEL E+KIP +RRYL
Sbjct: 97 RTTTPYMTKYERARLLGTRALQISMNAPVLVDTEGQTDPLKIALKELNEKKIPLVVRRYL 156
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 157 PDGYYEDWTCEELL 170
>gi|328852180|gb|EGG01328.1| hypothetical protein MELLADRAFT_53646 [Melampsora larici-populina
98AG31]
Length = 70
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 63/70 (90%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
MTKYERARILGTRALQISMNAPV+V L+GE+DPLEIAMKEL +RKIP +RRYLPDGSYE
Sbjct: 1 MTKYERARILGTRALQISMNAPVLVPLDGESDPLEIAMKELSQRKIPLIVRRYLPDGSYE 60
Query: 124 DWGVDELIVE 133
DW V ELI +
Sbjct: 61 DWSVSELIAD 70
>gi|67478192|ref|XP_654512.1| DNA-directed RNA polymerases I, II, and III 23 kDa [Entamoeba
histolytica HM-1:IMSS]
gi|56471574|gb|EAL49133.1| DNA-directed RNA polymerases I, II, and III 23 kDa, putative
[Entamoeba histolytica HM-1:IMSS]
gi|449704784|gb|EMD44960.1| DNA-directed RNA polymerases I II and III 23 kDa, putative
[Entamoeba histolytica KU27]
Length = 122
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 68/85 (80%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
EE+E K R T+++MTKYE+AR+LGTRALQISMNAPV V L G TD LEIAM EL+ K
Sbjct: 38 EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGK 97
Query: 109 IPFTIRRYLPDGSYEDWGVDELIVE 133
IPF IRR LP+GSYEDW V ELIVE
Sbjct: 98 IPFIIRRRLPNGSYEDWKVSELIVE 122
>gi|17531543|ref|NP_496278.1| Protein RPB-6 [Caenorhabditis elegans]
gi|2500631|sp|Q17684.1|RPAB2_CAEEL RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC2; Short=RNA polymerases I, II, and III
subunit ABC2; AltName: Full=RPB6 homolog
gi|3874008|emb|CAA90053.1| Protein RPB-6 [Caenorhabditis elegans]
Length = 137
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 66/75 (88%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R+IP +RRYLPD
Sbjct: 62 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPD 121
Query: 120 GSYEDWGVDELIVED 134
GSYEDW D+L + D
Sbjct: 122 GSYEDWPTDQLQLAD 136
>gi|157875592|ref|XP_001686182.1| putative DNA-directed RNA polymerase subunit [Leishmania major
strain Friedlin]
gi|68129256|emb|CAJ07796.1| putative DNA-directed RNA polymerase subunit [Leishmania major
strain Friedlin]
Length = 159
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS MTKYERAR+LGTRALQISMNAPV V LEGETDPL IA+KELRER+ P IRR L
Sbjct: 72 RVTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVL 131
Query: 118 PDGSYEDWGVDELIVE 133
PD +YEDW V EL+V+
Sbjct: 132 PDNTYEDWSVSELLVD 147
>gi|398022190|ref|XP_003864257.1| DNA-directed RNA polymerase subunit, putative [Leishmania donovani]
gi|322502492|emb|CBZ37575.1| DNA-directed RNA polymerase subunit, putative [Leishmania donovani]
Length = 159
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS MTKYERAR+LGTRALQISMNAPV V LEGETDPL IA+KELRER+ P IRR L
Sbjct: 72 RVTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVL 131
Query: 118 PDGSYEDWGVDELIVE 133
PD +YEDW V EL+V+
Sbjct: 132 PDNTYEDWSVSELLVD 147
>gi|146098767|ref|XP_001468465.1| putative DNA-directed RNA polymerase subunit [Leishmania infantum
JPCM5]
gi|134072833|emb|CAM71549.1| putative DNA-directed RNA polymerase subunit [Leishmania infantum
JPCM5]
Length = 159
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS MTKYERAR+LGTRALQISMNAPV V LEGETDPL IA+KELRER+ P IRR L
Sbjct: 72 RVTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVL 131
Query: 118 PDGSYEDWGVDELIVE 133
PD +YEDW V EL+V+
Sbjct: 132 PDNTYEDWSVSELLVD 147
>gi|402219913|gb|EJT99985.1| RNA polymerase Rpb6 [Dacryopinax sp. DJM-731 SS1]
Length = 121
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 66/82 (80%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
EE + R T+ YMTKYERARILGTRALQ+SMNAP +V EGETDPL+IA+KEL E+K
Sbjct: 37 EEHREANKERITTPYMTKYERARILGTRALQLSMNAPALVNTEGETDPLQIAIKELAEKK 96
Query: 109 IPFTIRRYLPDGSYEDWGVDEL 130
IP IRRYLPDGS+EDW V EL
Sbjct: 97 IPLVIRRYLPDGSFEDWKVTEL 118
>gi|402077218|gb|EJT72567.1| DNA-directed RNA polymerase I [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 155
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 66/74 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ +MTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KEL E+KIP IRRY+
Sbjct: 81 RTTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELAEKKIPLIIRRYM 140
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 141 PDGFYEDWTCEELL 154
>gi|401428389|ref|XP_003878677.1| putative DNA-directed RNA polymerase subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494926|emb|CBZ30229.1| putative DNA-directed RNA polymerase subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 159
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS MTKYERAR+LGTRALQISMNAPV V LEGETDPL IA+KELRER+ P IRR L
Sbjct: 72 RVTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVL 131
Query: 118 PDGSYEDWGVDELIVE 133
PD +YEDW V EL+V+
Sbjct: 132 PDNTYEDWSVSELLVD 147
>gi|154315392|ref|XP_001557019.1| DNA-directed RNA polymerases I, II, and III [Botryotinia fuckeliana
B05.10]
gi|347839609|emb|CCD54181.1| similar to DNA-directed RNA polymerase I [Botryotinia fuckeliana]
Length = 163
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 66/74 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAP++V+ EGETDPL+IA+KELR++KIP +RRY+
Sbjct: 89 RTTTPYMTKYERARILGTRALQISMNAPILVDQEGETDPLQIAIKELRDKKIPLIVRRYM 148
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 149 PDGWYEDWTCEELL 162
>gi|156051800|ref|XP_001591861.1| hypothetical protein SS1G_07307 [Sclerotinia sclerotiorum 1980]
gi|154705085|gb|EDO04824.1| hypothetical protein SS1G_07307 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 165
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 66/74 (89%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAP++V+ EGETDPL+IA+KELR++KIP +RRY+
Sbjct: 91 RTTTPYMTKYERARILGTRALQISMNAPILVDQEGETDPLQIAIKELRDKKIPLIVRRYM 150
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 151 PDGWYEDWTCEELL 164
>gi|339244629|ref|XP_003378240.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Trichinella spiralis]
gi|316972869|gb|EFV56515.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Trichinella spiralis]
Length = 145
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 69/85 (81%)
Query: 50 EQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 109
E ++K R T+ YMTKYERAR+LGTRALQISM APV+VELE E D LEIA KEL+ R+I
Sbjct: 60 EPDRKAKIRITTPYMTKYERARVLGTRALQISMGAPVLVELEDERDALEIARKELKARRI 119
Query: 110 PFTIRRYLPDGSYEDWGVDELIVED 134
P +RRY+PDGSYEDW VDELI+ D
Sbjct: 120 PLVVRRYMPDGSYEDWRVDELIITD 144
>gi|326426823|gb|EGD72393.1| DNA-directed RNA polymerase I [Salpingoeca sp. ATCC 50818]
Length = 115
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 69/89 (77%), Gaps = 5/89 (5%)
Query: 50 EQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 109
E ++ R T++YMTKYERAR+LG RALQISMNAP+MVELEGETDPL IA KEL KI
Sbjct: 24 EVKKPSKPRVTTRYMTKYERARVLGARALQISMNAPLMVELEGETDPLRIAQKELLAGKI 83
Query: 110 PFTIRRYLPDG-----SYEDWGVDELIVE 133
P IRRYLPD SYEDWGV+ELIVE
Sbjct: 84 PMIIRRYLPDHTPENPSYEDWGVNELIVE 112
>gi|290987692|ref|XP_002676556.1| predicted protein [Naegleria gruberi]
gi|284090159|gb|EFC43812.1| predicted protein [Naegleria gruberi]
Length = 130
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 66/73 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT++ MTK+E+AR+LGTRALQISMNAPV VEL+GETDPL+IA KEL+++KIP IRRYL
Sbjct: 53 RKTTRKMTKFEKARVLGTRALQISMNAPVTVELQGETDPLQIAKKELQQKKIPMIIRRYL 112
Query: 118 PDGSYEDWGVDEL 130
PD SYEDW V+EL
Sbjct: 113 PDKSYEDWHVNEL 125
>gi|167390225|ref|XP_001739254.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Entamoeba dispar SAW760]
gi|167394897|ref|XP_001741144.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Entamoeba dispar SAW760]
gi|165894406|gb|EDR22407.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2,
putative [Entamoeba dispar SAW760]
gi|165897105|gb|EDR24371.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2,
putative [Entamoeba dispar SAW760]
Length = 122
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 68/85 (80%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
EE+E K R T+++MTKYE+AR+LGTRALQISMNAPV V L G TD LEIAM EL+ K
Sbjct: 38 EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGK 97
Query: 109 IPFTIRRYLPDGSYEDWGVDELIVE 133
IPF IRR LP+GS+EDW V ELIVE
Sbjct: 98 IPFIIRRRLPNGSFEDWKVSELIVE 122
>gi|407042313|gb|EKE41265.1| RNA polymerases K / 14 to 18 kDa subunit domain containing protein
[Entamoeba nuttalli P19]
Length = 122
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 68/85 (80%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
EE+E K R T+++MTKYE+AR+LGTRALQISMNAPV V L G TD LEIAM EL+ K
Sbjct: 38 EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGK 97
Query: 109 IPFTIRRYLPDGSYEDWGVDELIVE 133
IPF IRR LP+GS+EDW V ELIVE
Sbjct: 98 IPFIIRRRLPNGSFEDWKVSELIVE 122
>gi|268532262|ref|XP_002631259.1| C. briggsae CBR-RPB-6 protein [Caenorhabditis briggsae]
gi|209573629|sp|A8WSV7.1|RPAB2_CAEBR RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC2; Short=RNA polymerases I, II, and III
subunit ABC2; AltName: Full=RPB6 homolog
Length = 138
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 66/75 (88%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R++P IRRYLPD
Sbjct: 63 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPIIIRRYLPD 122
Query: 120 GSYEDWGVDELIVED 134
GSYEDW ++L + D
Sbjct: 123 GSYEDWPTEQLQLAD 137
>gi|290760634|gb|ADD59902.1| DNA-directed RNA polymerase II polypeptide F [Hemiscyllium
ocellatum]
Length = 110
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 10/104 (9%)
Query: 21 EIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQI 80
+++ EED EN+ E + + ++ QK R T+ YMTKYERAR+LGTRALQI
Sbjct: 17 DLDNAEEEDRENV-------EILPATDGQQANQK---RITTAYMTKYERARVLGTRALQI 66
Query: 81 SMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYED 124
+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPDGSYED
Sbjct: 67 AMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSYED 110
>gi|313236536|emb|CBY11850.1| unnamed protein product [Oikopleura dioica]
Length = 114
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 73/98 (74%), Gaps = 3/98 (3%)
Query: 31 ENINNDDINGEPIETEEKEEQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVM 87
E + DD G+ + T +E + K + R T+ +MTKYERARILGTRALQI+MNAPVM
Sbjct: 17 ETVAGDDAGGDAVITTGEEVEGGKAVSKEDRITTPFMTKYERARILGTRALQIAMNAPVM 76
Query: 88 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 125
VEL GETDPL IA+KEL+ +KIP +RRYLPDGSYED
Sbjct: 77 VELRGETDPLAIALKELKVKKIPIIVRRYLPDGSYEDC 114
>gi|164656523|ref|XP_001729389.1| hypothetical protein MGL_3424 [Malassezia globosa CBS 7966]
gi|159103280|gb|EDP42175.1| hypothetical protein MGL_3424 [Malassezia globosa CBS 7966]
Length = 146
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 63/77 (81%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYE+ARILGTRALQISMNAPV+V EGE DPL IA KEL +KIP +RRYL
Sbjct: 70 RITTPYMTKYEKARILGTRALQISMNAPVLVPTEGEMDPLAIAQKELLAKKIPLLVRRYL 129
Query: 118 PDGSYEDWGVDELIVED 134
PDG++EDW V ELI+ D
Sbjct: 130 PDGTFEDWSVSELIITD 146
>gi|237832893|ref|XP_002365744.1| RNA polymerase II subunit RPB6, putative [Toxoplasma gondii ME49]
gi|211963408|gb|EEA98603.1| RNA polymerase II subunit RPB6, putative [Toxoplasma gondii ME49]
gi|221488202|gb|EEE26416.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221508714|gb|EEE34283.1| DNA-directed RNA polymerase IIB, putative [Toxoplasma gondii VEG]
Length = 146
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 68/86 (79%)
Query: 48 KEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRER 107
+ E R TS Y+TK+E+AR++GTRALQISMNAP+ + L+GETDPL IA KEL ++
Sbjct: 61 RPHARPSEGPRITSPYITKFEKARVIGTRALQISMNAPITIPLDGETDPLIIAEKELYQK 120
Query: 108 KIPFTIRRYLPDGSYEDWGVDELIVE 133
IPFTIRRYLPDGSYEDW + ELIV+
Sbjct: 121 TIPFTIRRYLPDGSYEDWKIQELIVD 146
>gi|296414634|ref|XP_002837003.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632851|emb|CAZ81194.1| unnamed protein product [Tuber melanosporum]
Length = 156
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 64/74 (86%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ Y+TKYERAR+LGTRALQISMNAPV+V+ GETDPL IA+KEL+E+KIP +RRYL
Sbjct: 83 RTTTPYLTKYERARVLGTRALQISMNAPVLVDTGGETDPLLIALKELQEKKIPLVVRRYL 142
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW DEL+
Sbjct: 143 PDGYYEDWTCDELL 156
>gi|401408805|ref|XP_003883851.1| Polymerase (RNA) II (DNA directed) polypeptide F,related [Neospora
caninum Liverpool]
gi|325118268|emb|CBZ53819.1| Polymerase (RNA) II (DNA directed) polypeptide F,related [Neospora
caninum Liverpool]
Length = 146
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 68/86 (79%)
Query: 48 KEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRER 107
+ E R TS Y+TK+E+AR++GTRALQISMNAP+ + L+GETDPL IA KEL ++
Sbjct: 61 RPHARPSEGPRITSPYITKFEKARVIGTRALQISMNAPITIPLDGETDPLIIAEKELYQK 120
Query: 108 KIPFTIRRYLPDGSYEDWGVDELIVE 133
IPFTIRRYLPDGSYEDW + ELIV+
Sbjct: 121 TIPFTIRRYLPDGSYEDWKIQELIVD 146
>gi|312089104|ref|XP_003146119.1| hypothetical protein LOAG_10547 [Loa loa]
Length = 72
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 63/71 (88%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
MTKYERARILGTRALQI+M APVMVELEGETDPLEIA KEL+ +KIP +RRYLPDGS+E
Sbjct: 1 MTKYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVRRYLPDGSFE 60
Query: 124 DWGVDELIVED 134
DW VDEL V D
Sbjct: 61 DWSVDELDVTD 71
>gi|160331075|ref|XP_001712245.1| rpabc6 [Hemiselmis andersenii]
gi|159765692|gb|ABW97920.1| rpabc6 [Hemiselmis andersenii]
Length = 137
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 71/85 (83%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
+E+ + RKT ++TKYE+ARILG RALQISM AP+M+E+EGETD L+IA KEL +RK
Sbjct: 53 QEETLSQDKRKTLPFLTKYEKARILGARALQISMGAPLMIEIEGETDALDIAAKELLKRK 112
Query: 109 IPFTIRRYLPDGSYEDWGVDELIVE 133
IP T+RRYLP+G++EDW +DELI+E
Sbjct: 113 IPITLRRYLPNGTFEDWDLDELIIE 137
>gi|402219908|gb|EJT99980.1| RNA polymerase Rpb6, partial [Dacryopinax sp. DJM-731 SS1]
Length = 82
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 63/73 (86%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQ+SMNAP +V EGETDPL+IA+KEL E+KIP IRRYL
Sbjct: 7 RITTPYMTKYERARILGTRALQLSMNAPALVNTEGETDPLQIAIKELAEKKIPLVIRRYL 66
Query: 118 PDGSYEDWGVDEL 130
PDGS+EDW V EL
Sbjct: 67 PDGSFEDWKVTEL 79
>gi|209879453|ref|XP_002141167.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Cryptosporidium muris RN66]
gi|209556773|gb|EEA06818.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2,
putative [Cryptosporidium muris RN66]
Length = 132
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 80/109 (73%), Gaps = 7/109 (6%)
Query: 25 GAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNA 84
++E+ E + +D I+ K E + E R T+ YMTK+E+ARI+GTRALQISMNA
Sbjct: 31 ASDENVEIMTDDVIHN-------KYEGKPCEGPRITTPYMTKFEKARIIGTRALQISMNA 83
Query: 85 PVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
PV + L+GETDPL IA KEL +KIPF IRRYLP+G+YEDW +DELI++
Sbjct: 84 PVAIPLDGETDPLIIAEKELYAKKIPFIIRRYLPNGNYEDWKIDELILD 132
>gi|384493789|gb|EIE84280.1| hypothetical protein RO3G_08990 [Rhizopus delemar RA 99-880]
Length = 155
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 77/105 (73%)
Query: 29 DAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMV 88
D +I ND ++G E+ + R T+ YMTKYERAR+LGTRALQIS+N+PVM+
Sbjct: 51 DRIDILNDVMSGGNRRQREQSPDPNERTERLTTPYMTKYERARVLGTRALQISLNSPVMI 110
Query: 89 ELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
EL GETD L IA +ELRE+++P IRRY+PDG+YEDW V +LIV+
Sbjct: 111 ELNGETDALVIANRELREKRLPLIIRRYMPDGTYEDWKVRDLIVD 155
>gi|56759040|gb|AAW27660.1| SJCHGC05009 protein [Schistosoma japonicum]
Length = 135
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 85/122 (69%), Gaps = 13/122 (10%)
Query: 24 EGAEEDAENINNDDINGEP-----IETEE--KEEQEQKEAA------RKTSKYMTKYERA 70
E EE + + +DD++ +P I T+E + Q AA R T+ Y+TKYERA
Sbjct: 12 ESDEEPLDEVPDDDLDTKPDGVTYITTDEVPRLSSGQSLAAPVEKSKRITTPYLTKYERA 71
Query: 71 RILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 130
R+LG RALQ+SM+APVMVEL+GE DPL+IA KELR KIP IRR+LPDGS+EDW +DEL
Sbjct: 72 RVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGSFEDWSLDEL 131
Query: 131 IV 132
I+
Sbjct: 132 IL 133
>gi|349952239|dbj|GAA35313.1| DNA-directed RNA polymerases I II and III subunit RPABC2
[Clonorchis sinensis]
Length = 136
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 67/78 (85%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+ Y+TKYERAR+LG RALQ+SM+APVMVEL+GE DPL+IA KELR KIP IR
Sbjct: 57 KSKRITTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIR 116
Query: 115 RYLPDGSYEDWGVDELIV 132
RYLPDGS+EDW +DELI+
Sbjct: 117 RYLPDGSFEDWSLDELIL 134
>gi|322694964|gb|EFY86781.1| DNA-directed RNA polymerases I [Metarhizium acridum CQMa 102]
Length = 141
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 81/101 (80%), Gaps = 8/101 (7%)
Query: 28 EDAENINNDDINGEP------IETEEKEEQEQK--EAARKTSKYMTKYERARILGTRALQ 79
E+ ++ +N ++G+P +++ EK +++K EA R T+ YMTKYERARILGTRALQ
Sbjct: 41 ENGDDADNVVVSGDPSAAANALKSGEKSLKDKKIPEADRTTTPYMTKYERARILGTRALQ 100
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
ISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRYLPDG
Sbjct: 101 ISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPDG 141
>gi|66363316|ref|XP_628624.1| DNA-directed RNA polymerase subunit [Cryptosporidium parvum Iowa
II]
gi|67621068|ref|XP_667745.1| DNA-directed RNA polymerase IIa [Cryptosporidium hominis TU502]
gi|46229627|gb|EAK90445.1| DNA-directed RNA polymerase subunit [Cryptosporidium parvum Iowa
II]
gi|54658913|gb|EAL37521.1| DNA-directed RNA polymerase IIa [Cryptosporidium hominis]
Length = 129
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 70/89 (78%)
Query: 45 TEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL 104
+ + + E R T+ YMTK+E+ARI+GTRALQISMNAPV + L+GETDPL IA KEL
Sbjct: 41 VHSRYDGKPNEGPRITTPYMTKFEKARIIGTRALQISMNAPVAIPLDGETDPLLIAEKEL 100
Query: 105 RERKIPFTIRRYLPDGSYEDWGVDELIVE 133
+KIPF IRRYLP+G+YEDW +DELI++
Sbjct: 101 YTKKIPFVIRRYLPNGNYEDWKIDELILD 129
>gi|449524488|ref|XP_004169254.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like, partial [Cucumis sativus]
Length = 97
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/98 (80%), Positives = 87/98 (88%), Gaps = 1/98 (1%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKT 60
MAD+DYNDLDMGYEDEPPEPEIEEGAEE+ + N DD+ GEP+E E KE++E E RKT
Sbjct: 1 MADDDYNDLDMGYEDEPPEPEIEEGAEEELDT-NTDDVPGEPVEAEGKEDEEPVERVRKT 59
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLE 98
SK+MTKYERARILGTRALQISMNAPVMVELEGETDPLE
Sbjct: 60 SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLE 97
>gi|256084640|ref|XP_002578535.1| DNA-directed rna polymerase subunit rpb6 [Schistosoma mansoni]
gi|353228703|emb|CCD74874.1| putative DNA-directed rna polymerase subunit rpb6 [Schistosoma
mansoni]
Length = 134
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 67/78 (85%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
++ R T+ Y+TKYERAR+LG RALQ+SM+APVMVEL+GE DPL+IA KELR KIP IR
Sbjct: 55 KSKRVTTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIR 114
Query: 115 RYLPDGSYEDWGVDELIV 132
R+LPDGS+EDW +DELI+
Sbjct: 115 RFLPDGSFEDWSLDELIL 132
>gi|322705854|gb|EFY97437.1| DNA-directed RNA polymerases I [Metarhizium anisopliae ARSEF 23]
Length = 141
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 80/101 (79%), Gaps = 8/101 (7%)
Query: 28 EDAENINNDDINGEP------IETEEKEEQEQK--EAARKTSKYMTKYERARILGTRALQ 79
E+ ++ +N ++G+P ++ EK +++K EA R T+ YMTKYERARILGTRALQ
Sbjct: 41 ENGDDADNVVVSGDPSAAANALKAGEKSLKDKKIPEADRTTTPYMTKYERARILGTRALQ 100
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
ISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+PDG
Sbjct: 101 ISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDG 141
>gi|396469030|ref|XP_003838317.1| hypothetical protein LEMA_P118410.1 [Leptosphaeria maculans JN3]
gi|312214884|emb|CBX94838.1| hypothetical protein LEMA_P118410.1 [Leptosphaeria maculans JN3]
Length = 175
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 64/75 (85%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQIS NAPV++++EG TDPL+IA KEL+E+KIP +RRYL
Sbjct: 101 RTTTPYMTKYERARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYL 160
Query: 118 PDGSYEDWGVDELIV 132
PDG YEDW +EL+
Sbjct: 161 PDGFYEDWTCEELLT 175
>gi|169595038|ref|XP_001790943.1| hypothetical protein SNOG_00252 [Phaeosphaeria nodorum SN15]
gi|111070627|gb|EAT91747.1| hypothetical protein SNOG_00252 [Phaeosphaeria nodorum SN15]
Length = 161
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 64/74 (86%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERAR+LGTRALQIS NAPV++++EG TDPL+IA KEL+E+KIP +RRYL
Sbjct: 87 RTTTPYMTKYERARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYL 146
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 147 PDGFYEDWTCEELL 160
>gi|388580341|gb|EIM20656.1| RNA polymerase Rpb6 [Wallemia sebi CBS 633.66]
Length = 90
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 64/77 (83%), Gaps = 1/77 (1%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELE-GETDPLEIAMKELRERKIPFTIRRY 116
R T+ YMTKYERARILGTRALQISMNAPV+V +E GE+DPL+IA+KEL K+P +RRY
Sbjct: 14 RVTTPYMTKYERARILGTRALQISMNAPVLVPIEVGESDPLQIAIKELSSNKVPLIVRRY 73
Query: 117 LPDGSYEDWGVDELIVE 133
LPDGS+EDW ELI E
Sbjct: 74 LPDGSFEDWKCQELITE 90
>gi|159484600|ref|XP_001700342.1| subunit of DNA-directed RNA polymerase [Chlamydomonas reinhardtii]
gi|158272383|gb|EDO98184.1| subunit of DNA-directed RNA polymerase [Chlamydomonas reinhardtii]
Length = 87
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/62 (87%), Positives = 60/62 (96%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T++YMTKYE+AR+LGTRALQISMNAPVMVEL GETDPLEIAMKELRE+K+PFTIRRYL
Sbjct: 26 RITTRYMTKYEKARVLGTRALQISMNAPVMVELSGETDPLEIAMKELREKKVPFTIRRYL 85
Query: 118 PD 119
PD
Sbjct: 86 PD 87
>gi|358060676|dbj|GAA93615.1| hypothetical protein E5Q_00259 [Mixia osmundae IAM 14324]
Length = 147
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 60/68 (88%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYE+AR+LGTRALQISMNAPV+V LE ETDPLEIAMKEL + KIP +RR+L
Sbjct: 67 RITTPYMTKYEKARVLGTRALQISMNAPVLVTLENETDPLEIAMKELAQGKIPLIVRRFL 126
Query: 118 PDGSYEDW 125
PDGSYEDW
Sbjct: 127 PDGSYEDW 134
>gi|189201986|ref|XP_001937329.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984428|gb|EDU49916.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 163
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
Query: 45 TEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL 104
T EK+++ E R T+ YMTKYE+AR+LGTRALQIS NAPV++++EG TDPL+IA KEL
Sbjct: 77 TSEKDKRVPNEK-RTTTPYMTKYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKEL 135
Query: 105 RERKIPFTIRRYLPDGSYEDWGVDELIV 132
+E+KIP +RRYLPDG YEDW +EL+
Sbjct: 136 QEKKIPLVVRRYLPDGFYEDWTCEELLT 163
>gi|330923427|ref|XP_003300236.1| hypothetical protein PTT_11419 [Pyrenophora teres f. teres 0-1]
gi|311325727|gb|EFQ91661.1| hypothetical protein PTT_11419 [Pyrenophora teres f. teres 0-1]
Length = 163
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
Query: 45 TEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL 104
T EK+++ E R T+ YMTKYE+AR+LGTRALQIS NAPV++++EG TDPL+IA KEL
Sbjct: 77 TSEKDKRVPNEK-RTTTPYMTKYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKEL 135
Query: 105 RERKIPFTIRRYLPDGSYEDWGVDELIV 132
+E+KIP +RRYLPDG YEDW +EL+
Sbjct: 136 QEKKIPLVVRRYLPDGFYEDWTCEELLT 163
>gi|171686806|ref|XP_001908344.1| hypothetical protein [Podospora anserina S mat+]
gi|170943364|emb|CAP69017.1| unnamed protein product [Podospora anserina S mat+]
Length = 153
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 61/64 (95%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT+ YMTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+
Sbjct: 78 RKTTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYM 137
Query: 118 PDGS 121
PDGS
Sbjct: 138 PDGS 141
>gi|358377941|gb|EHK15624.1| hypothetical protein TRIVIDRAFT_164408 [Trichoderma virens Gv29-8]
Length = 140
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 80/113 (70%), Gaps = 13/113 (11%)
Query: 19 EPEIEEGAEEDAENINNDD-----INGEPIETEEKEEQEQKEAA------RKTSKYMTKY 67
EPE+ + +ED E+ + DD I+G+P + + + R T+ YMTKY
Sbjct: 30 EPEVAD--DEDGEHAHGDDQDNVVISGDPSAAANASKDKSVKDKKIPDDQRTTTPYMTKY 87
Query: 68 ERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
ERARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+PDG
Sbjct: 88 ERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDG 140
>gi|451852409|gb|EMD65704.1| hypothetical protein COCSADRAFT_87368 [Cochliobolus sativus ND90Pr]
Length = 124
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 64/74 (86%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYE+AR+LGTRALQIS NAPV++++EG TDPL+IA KEL+E+KIP +RRYL
Sbjct: 50 RTTTPYMTKYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYL 109
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 110 PDGFYEDWTCEELL 123
>gi|451997265|gb|EMD89730.1| hypothetical protein COCHEDRAFT_1105445 [Cochliobolus
heterostrophus C5]
Length = 125
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 64/74 (86%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYE+AR+LGTRALQIS NAPV++++EG TDPL+IA KEL+E+KIP +RRYL
Sbjct: 51 RTTTPYMTKYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYL 110
Query: 118 PDGSYEDWGVDELI 131
PDG YEDW +EL+
Sbjct: 111 PDGFYEDWTCEELL 124
>gi|428176217|gb|EKX45103.1| hypothetical protein GUITHDRAFT_71663 [Guillardia theta CCMP2712]
Length = 94
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEG-ETDPLEIAMKELRERKIPFTIRRY 116
R T+ YMTKYERAR+LGTRALQISMNAPV+ + G E+DPL IAMKEL++ KIPF IRRY
Sbjct: 18 RLTTPYMTKYERARVLGTRALQISMNAPVLTSVPGSESDPLRIAMKELKDGKIPFVIRRY 77
Query: 117 LPDGSYEDWGVDELI 131
LPDGS+EDW + +LI
Sbjct: 78 LPDGSFEDWPIADLI 92
>gi|428174548|gb|EKX43443.1| hypothetical protein GUITHDRAFT_73062 [Guillardia theta CCMP2712]
Length = 95
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%)
Query: 53 QKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 112
+++ R+T YMTKYER RILG RALQISMNAPVMV ++ ETDPL+IA KEL K+PF
Sbjct: 6 RRKQKRQTMPYMTKYERTRILGIRALQISMNAPVMVPVDKETDPLKIATKELIAGKVPFI 65
Query: 113 IRRYLPDGSYEDWGVDELIVED 134
IRR+LP+GS EDW V+ELI+E
Sbjct: 66 IRRHLPNGSSEDWAVNELIIEH 87
>gi|356506604|ref|XP_003522068.1| PREDICTED: uncharacterized protein LOC100820517 [Glycine max]
Length = 210
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 77/100 (77%), Gaps = 6/100 (6%)
Query: 5 DYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYM 64
DY D+DMGYEDEPPE EI+E D EN ND++ EPI+T++KEE++ E RKTSKYM
Sbjct: 9 DYEDIDMGYEDEPPEAEIDE----DLEN-KNDELTKEPIDTQDKEEEQPVERPRKTSKYM 63
Query: 65 TKYERARILGTRALQISM-NAPVMVELEGETDPLEIAMKE 103
TKYE ARILGT ALQI + PVMVELEGETDPLE+ + +
Sbjct: 64 TKYEHARILGTCALQIRFYDVPVMVELEGETDPLEVDLTQ 103
>gi|358392032|gb|EHK41436.1| hypothetical protein TRIATDRAFT_77949 [Trichoderma atroviride IMI
206040]
Length = 126
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 80/111 (72%), Gaps = 11/111 (9%)
Query: 19 EPEIEEGAEEDAENINNDD---INGEPIETEEKEEQEQKEAA------RKTSKYMTKYER 69
+PE+ G ++D E+ N+ D I+G+P + + + R T+ YMTKYER
Sbjct: 18 DPEV--GEDDDNEHANDQDHIVISGDPSAAANASKDKSVKDKKIPDDQRTTTPYMTKYER 75
Query: 70 ARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP +RRY+PDG
Sbjct: 76 ARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDG 126
>gi|357017613|gb|AET50835.1| hypothetical protein [Eimeria tenella]
Length = 143
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 70/87 (80%)
Query: 47 EKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE 106
++ E E R TS Y+TK+E+AR++GTRALQ+S++AP+ V EGETDPL +A KELR+
Sbjct: 57 QRPEARPNEGPRLTSPYLTKFEKARVVGTRALQLSLSAPLTVSAEGETDPLLLAEKELRQ 116
Query: 107 RKIPFTIRRYLPDGSYEDWGVDELIVE 133
+ +PF IRRYLPDGS+EDW +DEL+++
Sbjct: 117 KTLPFRIRRYLPDGSFEDWRLDELLID 143
>gi|46124611|ref|XP_386859.1| hypothetical protein FG06683.1 [Gibberella zeae PH-1]
Length = 139
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 61/66 (92%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
E+ R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+KE+RE+KIP +R
Sbjct: 74 ESERTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVR 133
Query: 115 RYLPDG 120
RY+PDG
Sbjct: 134 RYMPDG 139
>gi|399949803|gb|AFP65460.1| DNA-directed RNA polymerase I, II, and III 15kDa polypeptide
[Chroomonas mesostigmatica CCMP1168]
Length = 133
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 65/77 (84%)
Query: 57 ARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R T ++TKYE+ARILG RALQ+SM AP+M+E EGETD L+IA KEL +RKIP +IRRY
Sbjct: 57 TRLTLPFLTKYEKARILGARALQLSMGAPLMIETEGETDALDIAAKELLKRKIPISIRRY 116
Query: 117 LPDGSYEDWGVDELIVE 133
LPDG++EDW ++ELI++
Sbjct: 117 LPDGTFEDWLLNELIID 133
>gi|361126023|gb|EHK98039.1| putative DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Glarea lozoyensis 74030]
Length = 150
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 59/63 (93%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+KE++ERKIP +RRY+
Sbjct: 88 RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMKERKIPLIVRRYM 147
Query: 118 PDG 120
PDG
Sbjct: 148 PDG 150
>gi|343476703|emb|CCD12275.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
gi|343476704|emb|CCD12276.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 144
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 61/76 (80%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +TKYERARILGTRALQISMNAPV+V LEGETDPL IA KELRE IP IRR L
Sbjct: 57 RVTSPVLTKYERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIIRRVL 116
Query: 118 PDGSYEDWGVDELIVE 133
PD +YEDW + EL V+
Sbjct: 117 PDNTYEDWRICELDVD 132
>gi|261327674|emb|CBH10651.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 144
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 61/76 (80%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ +TKYERARILGTRALQISMNAPV+V LEGETDPL IA KELRE IP IRR L
Sbjct: 57 RVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVL 116
Query: 118 PDGSYEDWGVDELIVE 133
PD +YEDW + EL V+
Sbjct: 117 PDNTYEDWRICELDVD 132
>gi|403354386|gb|EJY76747.1| DNA-directed RNA polymerase, subunit K/omega [Oxytricha trifallax]
Length = 134
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 3/105 (2%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
++DAE + G P E +++ KE R TS +MTKYE+AR+LGTRALQIS NAP+
Sbjct: 30 DDDAEALEAQAAGGAPGEYLGGKKKANKE--RITSSFMTKYEKARVLGTRALQISKNAPL 87
Query: 87 MVE-LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 130
M++ + GE DP ++A +EL ERKIPF IRRYLPDG+YEDW + EL
Sbjct: 88 MIQPMPGEHDPYKLAERELNERKIPFIIRRYLPDGTYEDWKLSEL 132
>gi|72388150|ref|XP_844499.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|72388154|ref|XP_844501.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|62358750|gb|AAX79204.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei]
gi|62358752|gb|AAX79206.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei]
gi|70801032|gb|AAZ10940.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|70801034|gb|AAZ10942.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|90954541|emb|CAJ44465.1| RNA polymerase subunit 2RPB6 [Trypanosoma brucei brucei]
gi|261327672|emb|CBH10649.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 144
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 61/76 (80%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ +TKYERARILGTRALQISMNAPV+V LEGETDPL IA KELRE IP IRR L
Sbjct: 57 RVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVL 116
Query: 118 PDGSYEDWGVDELIVE 133
PD +YEDW + EL V+
Sbjct: 117 PDNTYEDWRICELDVD 132
>gi|67524579|ref|XP_660351.1| hypothetical protein AN2747.2 [Aspergillus nidulans FGSC A4]
gi|40743999|gb|EAA63181.1| hypothetical protein AN2747.2 [Aspergillus nidulans FGSC A4]
gi|259486339|tpe|CBF84098.1| TPA: DNA-directed RNA polymerase I, II, and III subunit Rpb6
(AFU_orthologue; AFUA_1G05160) [Aspergillus nidulans
FGSC A4]
Length = 198
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 6/95 (6%)
Query: 38 INGEPIETEEKEEQEQKEAA------RKTSKYMTKYERARILGTRALQISMNAPVMVELE 91
++G+P + EQ A R T+ YMTKYERAR+LGTRALQIS+NAPV+V+LE
Sbjct: 60 VSGDPNAGYSGKVVEQARAKKIPNDQRTTTPYMTKYERARVLGTRALQISLNAPVLVDLE 119
Query: 92 GETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWG 126
GETDPL+IAMKEL ++KIP +RRYLPDG+ +G
Sbjct: 120 GETDPLQIAMKELAQKKIPLIVRRYLPDGTEAAYG 154
>gi|300120817|emb|CBK21059.2| unnamed protein product [Blastocystis hominis]
Length = 82
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 63/73 (86%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ Y+TKYERARILGTRALQ+SMNAP MVE+ G+TD L+IA++ELR++KIP IRR+L
Sbjct: 7 RVTTPYLTKYERARILGTRALQLSMNAPPMVEVNGQTDTLQIALEELRQKKIPLIIRRFL 66
Query: 118 PDGSYEDWGVDEL 130
P G +EDW +DEL
Sbjct: 67 PSGKFEDWRLDEL 79
>gi|71407638|ref|XP_806275.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71423247|ref|XP_812392.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71423251|ref|XP_812394.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|70869970|gb|EAN84424.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70877167|gb|EAN90541.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70877169|gb|EAN90543.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 144
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ +TKYERARILGTRALQISMNAPV+V LEGETDPL IA KELRE IP +RR L
Sbjct: 57 RVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIVRRVL 116
Query: 118 PDGSYEDWGVDEL 130
PD +YEDW + EL
Sbjct: 117 PDNTYEDWRICEL 129
>gi|340053373|emb|CCC47662.1| putative DNA-directed RNA polymerase subunit [Trypanosoma vivax
Y486]
Length = 141
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 60/76 (78%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T +TKYERAR+LGTRALQISMNAPV+V LEGETDPL IA KELRE IP +RR L
Sbjct: 54 RMTMPVLTKYERARVLGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIVRRVL 113
Query: 118 PDGSYEDWGVDELIVE 133
PD +YEDW + EL V+
Sbjct: 114 PDNTYEDWRICELDVD 129
>gi|71400730|ref|XP_803144.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71411599|ref|XP_808042.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71411605|ref|XP_808045.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71411609|ref|XP_808047.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|70865825|gb|EAN81698.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70872164|gb|EAN86191.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70872167|gb|EAN86194.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70872169|gb|EAN86196.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 144
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T+ +TKYERARILGTRALQISMNAPV+V LEGETDPL IA KELRE IP +RR L
Sbjct: 57 RVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIVRRVL 116
Query: 118 PDGSYEDWGVDEL 130
PD +YEDW + EL
Sbjct: 117 PDNTYEDWRICEL 129
>gi|330040364|ref|XP_003239876.1| DNA-directed RNA polymerase I, II, and III 15kDa polypeptide
[Cryptomonas paramecium]
gi|327206801|gb|AEA38978.1| DNA-directed RNA polymerase I, II, and III 15kDa polypeptide
[Cryptomonas paramecium]
Length = 130
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 61/76 (80%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T Y+TK+E+ARILG RALQ+SM AP+ ++ ETD LE+A KEL ERKIP TIRRYL
Sbjct: 55 RTTLPYLTKFEKARILGARALQLSMGAPLTIKTNSETDVLELAAKELVERKIPITIRRYL 114
Query: 118 PDGSYEDWGVDELIVE 133
P+G YEDW VDELI+E
Sbjct: 115 PNGKYEDWRVDELIIE 130
>gi|115388511|ref|XP_001211761.1| DNA-directed RNA polymerases I [Aspergillus terreus NIH2624]
gi|114195845|gb|EAU37545.1| DNA-directed RNA polymerases I [Aspergillus terreus NIH2624]
Length = 163
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 82/131 (62%), Gaps = 19/131 (14%)
Query: 20 PEIEEGAEEDAEN---------INNDDI--NGEPIE------TEEKEEQEQKEAARKTSK 62
PE EGAE AEN +N D + +G+P E+ E++ R T+
Sbjct: 33 PEDVEGAEGGAENYDGESYAPAVNGDRVVVSGDPNAGYSGRVMEQTREKKVPNDQRTTTP 92
Query: 63 YMTKYERARILGTRALQ--ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
YMTKYERAR+ G L SMNAPV+V+LEGETDPL+IA+KEL ++KIP +RRYLPDG
Sbjct: 93 YMTKYERARLFGGFILTGAASMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPDG 152
Query: 121 SYEDWGVDELI 131
YEDW +EL+
Sbjct: 153 YYEDWTCEELL 163
>gi|429964663|gb|ELA46661.1| hypothetical protein VCUG_01887 [Vavraia culicis 'floridensis']
Length = 119
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 34 NNDDINGEPIETEEKEEQEQKEAARK-TSKYMTKYERARILGTRALQISMNAPVMVELEG 92
+++ N E + +E+ K+++R+ TS MTKYE+ RI+G RA+Q+SMNAP +VE+EG
Sbjct: 6 HSESSNTETVIIKERPPSPPKKSSRRVTSSLMTKYEKTRIIGMRAMQLSMNAPPLVEIEG 65
Query: 93 ETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
ETD L IA KE RKIPF +RR LPD +YEDW ++EL+ D
Sbjct: 66 ETDALRIAEKEFYARKIPFIVRRRLPDNTYEDWSINELVYPD 107
>gi|240279812|gb|EER43317.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
Length = 159
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 88/155 (56%), Gaps = 42/155 (27%)
Query: 10 DMGYEDEPP-------------EPEIEEGAEEDAENINNDDINGEPIETEEKE------- 49
D G++ EPP EPE E E +N D G+P++ E +
Sbjct: 14 DAGFDYEPPQYEYIDNEPEDYVEPEQTEHGENGYAIVNGD---GQPVQNGEGDVVSGDPN 70
Query: 50 ----------EQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDP 96
+Q +K+ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDP
Sbjct: 71 AGASKGKVMLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDP 130
Query: 97 LEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
L+IA+KEL ++KIP +RR YEDW +EL+
Sbjct: 131 LQIALKELAQKKIPLIVRR------YEDWTCEELL 159
>gi|225562993|gb|EEH11272.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus G186AR]
Length = 159
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 88/155 (56%), Gaps = 42/155 (27%)
Query: 10 DMGYEDEPPE-------------PEIEEGAEEDAENINNDDINGEPIETEEKE------- 49
D G++ EPPE PE E E +N D G+P++ E +
Sbjct: 14 DAGFDYEPPEYEYIDNEPEDYVEPEQTEHGENGYAIVNGD---GQPVQNGEGDVVSGDPN 70
Query: 50 ----------EQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDP 96
+Q +K+ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDP
Sbjct: 71 AGASKGKVMLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDP 130
Query: 97 LEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
L+IA+KEL ++KIP +RR YEDW +EL+
Sbjct: 131 LQIALKELAQKKIPLIVRR------YEDWTCEELL 159
>gi|341888878|gb|EGT44813.1| hypothetical protein CAEBREN_14268 [Caenorhabditis brenneri]
Length = 136
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 66/75 (88%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R+IP IRRYLPD
Sbjct: 61 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIIRRYLPD 120
Query: 120 GSYEDWGVDELIVED 134
GSYEDW D+L + D
Sbjct: 121 GSYEDWSTDQLQLAD 135
>gi|296004344|ref|XP_001351108.2| DNA-directed RNA polymerase subunit I, putative [Plasmodium
falciparum 3D7]
gi|225685549|emb|CAB10577.2| DNA-directed RNA polymerase subunit I, putative [Plasmodium
falciparum 3D7]
Length = 153
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 77/127 (60%), Gaps = 21/127 (16%)
Query: 28 EDAENINNDD--INGEPIETEEKEEQEQKEA----ARKTSKYMTKYERARILGTRALQIS 81
+D EN ND I I+ + K + E EA R TS Y+TKYE+ARI+GTRALQIS
Sbjct: 27 DDGENYENDIDIITDHQIKKDNKSDYENSEANEDNIRITSPYLTKYEKARIIGTRALQIS 86
Query: 82 MNAPVMVELEGETD---------------PLEIAMKELRERKIPFTIRRYLPDGSYEDWG 126
MNAP+ + +E D PL IA KEL + IPF +RRYLP+GSYEDW
Sbjct: 87 MNAPLTIPIETSNDMINSKNEYDNYLNNDPLVIAEKELYNKSIPFILRRYLPNGSYEDWR 146
Query: 127 VDELIVE 133
+DELI++
Sbjct: 147 LDELIID 153
>gi|440494018|gb|ELQ76432.1| RNA polymerase subunit K [Trachipleistophora hominis]
Length = 119
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 60/82 (73%)
Query: 53 QKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 112
+K R TS MTKYE+ RI+G RA+Q+SMNAP +VE+E ETD L IA KE RKIPF
Sbjct: 26 KKSNKRVTSPLMTKYEKTRIIGMRAMQLSMNAPPLVEIEAETDALRIAEKEFYARKIPFI 85
Query: 113 IRRYLPDGSYEDWGVDELIVED 134
+RR LPD +YEDW V+ELI D
Sbjct: 86 VRRRLPDNTYEDWNVNELIYPD 107
>gi|389583563|dbj|GAB66298.1| DNA-directed RNA polymerases I II and III 14.4 kDa polypeptide,
partial [Plasmodium cynomolgi strain B]
Length = 139
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 79/128 (61%), Gaps = 22/128 (17%)
Query: 28 EDAENINND-DINGEPIETEEKEEQEQKEA----ARKTSKYMTKYERARILGTRALQISM 82
+D +N ND DI E +EK + E +A R TS Y+TKYE+ARI+GTRALQIS+
Sbjct: 12 DDGDNYENDIDIITENQIKKEKSDYEHSDANDDNIRITSPYLTKYEKARIIGTRALQISL 71
Query: 83 NAPVMVELEGE-----------------TDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 125
NAP+ + +E + DPL IA KEL + IPF +RRYLP+GSYEDW
Sbjct: 72 NAPLTIPIETQGGGDVSNGKNEYDNYLNNDPLVIAEKELHNKSIPFILRRYLPNGSYEDW 131
Query: 126 GVDELIVE 133
+DELI++
Sbjct: 132 KLDELIID 139
>gi|221055753|ref|XP_002259015.1| dna-directed rna polymerase subunit i [Plasmodium knowlesi strain
H]
gi|193809085|emb|CAQ39788.1| dna-directed rna polymerase subunit i, putative [Plasmodium
knowlesi strain H]
Length = 158
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 22/142 (15%)
Query: 14 EDEPPEPEIEEGAE-EDAENINND-DINGEPIETEEKEEQEQKEA----ARKTSKYMTKY 67
ED+ E +G + +D +N ND DI E +EK + E +A R TS Y+TKY
Sbjct: 17 EDDFMGDEFGQGVDSDDGDNYENDIDIITENQIKKEKSDYEHSDANEDNIRITSPYLTKY 76
Query: 68 ERARILGTRALQISMNAPVMVELEGE----------------TDPLEIAMKELRERKIPF 111
E+ARI+GTRALQIS+NAP+ + +E + DPL IA +EL + IPF
Sbjct: 77 EKARIIGTRALQISLNAPLTIPIETQGGDVSNGKNEYDNYLNNDPLVIAERELHNKSIPF 136
Query: 112 TIRRYLPDGSYEDWGVDELIVE 133
+RRYLP+GSYEDW +DELI++
Sbjct: 137 ILRRYLPNGSYEDWKLDELIID 158
>gi|14578297|gb|AAF99463.1| PV1H14085_P [Plasmodium vivax]
Length = 157
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 85/142 (59%), Gaps = 22/142 (15%)
Query: 14 EDEPPEPEIEEGAE-EDAENINND-DINGEPIETEEKEEQEQKEA----ARKTSKYMTKY 67
ED+ E +G + +D +N ND DI E +EK + E + R TS Y+TKY
Sbjct: 16 EDDFMGDEFGQGVDSDDGDNYENDIDIITENQIKKEKSDYEHSDVNEDNIRITSPYLTKY 75
Query: 68 ERARILGTRALQISMNAPVMVELEGE----------------TDPLEIAMKELRERKIPF 111
E+ARI+GTRALQIS+NAP+ + +E + DPL IA KEL + IPF
Sbjct: 76 EKARIIGTRALQISLNAPLTIPIETQGGEVSNGKNEYDNYLNNDPLVIAEKELHNKSIPF 135
Query: 112 TIRRYLPDGSYEDWGVDELIVE 133
+RRYLP+GSYEDW +DELI++
Sbjct: 136 ILRRYLPNGSYEDWKLDELIID 157
>gi|302916149|ref|XP_003051885.1| hypothetical protein NECHADRAFT_79417 [Nectria haematococca mpVI
77-13-4]
gi|256732824|gb|EEU46172.1| hypothetical protein NECHADRAFT_79417 [Nectria haematococca mpVI
77-13-4]
Length = 161
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 80/117 (68%), Gaps = 13/117 (11%)
Query: 28 EDAENINNDDINGEP------IETEEKEEQEQK--EAARKTSKYMTKYERARILGTRALQ 79
+D E+++N ++G+P ++ EK +++K E R T+ YMTKYERARILGTRALQ
Sbjct: 44 QDGEDMDNVVVSGDPSAAANALKGGEKLLKDKKIPEGERTTTPYMTKYERARILGTRALQ 103
Query: 80 ISM-----NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
I +A L GETDPL+IA+KE+RE+KIP +RRYLPDG YEDW +EL+
Sbjct: 104 IRFAFLERDASRPGWLTGETDPLQIAIKEMREKKIPLIVRRYLPDGYYEDWTCEELL 160
>gi|156094035|ref|XP_001613055.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Plasmodium vivax Sal-1]
gi|148801929|gb|EDL43328.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Plasmodium vivax]
Length = 153
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 21/127 (16%)
Query: 28 EDAENINND-DINGEPIETEEKEEQEQKEA----ARKTSKYMTKYERARILGTRALQISM 82
+D +N ND DI E +EK + E + R TS Y+TKYE+ARI+GTRALQIS+
Sbjct: 27 DDGDNYENDIDIITENQIKKEKSDYEHSDVNEDNIRITSPYLTKYEKARIIGTRALQISL 86
Query: 83 NAPVMVELEGE----------------TDPLEIAMKELRERKIPFTIRRYLPDGSYEDWG 126
NAP+ + +E + DPL IA KEL + IPF +RRYLP+GSYEDW
Sbjct: 87 NAPLTIPIETQGGEVSNGKNEYDNYLNNDPLVIAEKELHNKSIPFILRRYLPNGSYEDWK 146
Query: 127 VDELIVE 133
+DELI++
Sbjct: 147 LDELIID 153
>gi|84996807|ref|XP_953125.1| RNA polymerase common subunit (Rpb6 homologue) [Theileria annulata
strain Ankara]
gi|65304121|emb|CAI76500.1| RNA polymerase common subunit (Rpb6 homologue), putative [Theileria
annulata]
Length = 153
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 25/126 (19%)
Query: 29 DAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMV 88
D +++ DI +P E + + + A R TS Y+TKYE+ARI+GTRALQIS+NAP+ +
Sbjct: 32 DQRRVSDVDIITDPTEFKTQVDS----AHRITSPYLTKYEKARIIGTRALQISLNAPITI 87
Query: 89 ELEGET---------------------DPLEIAMKELRERKIPFTIRRYLPDGSYEDWGV 127
++G + DPL IA KEL ++ +PF +RRYLP+GSYEDW +
Sbjct: 88 PIDGPSEANDDGFTTLGDFGDTQTTAIDPLIIAEKELYQKTVPFIVRRYLPNGSYEDWKI 147
Query: 128 DELIVE 133
DELI++
Sbjct: 148 DELIID 153
>gi|308509118|ref|XP_003116742.1| CRE-RPB-6 protein [Caenorhabditis remanei]
gi|308241656|gb|EFO85608.1| CRE-RPB-6 protein [Caenorhabditis remanei]
Length = 137
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 66/75 (88%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R+IP IRRYLPD
Sbjct: 62 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIIRRYLPD 121
Query: 120 GSYEDWGVDELIVED 134
GSYEDW ++L + D
Sbjct: 122 GSYEDWPTEQLQLAD 136
>gi|403223948|dbj|BAM42078.1| RNA polymerase common subunit [Theileria orientalis strain
Shintoku]
Length = 153
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 25/124 (20%)
Query: 31 ENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVEL 90
+ + + DI +PIE + + + A R T+ Y+TKYE+ARI+GTRALQIS+NAP+ + L
Sbjct: 34 QRVADVDIITDPIEYKTQVDS----AHRITTPYLTKYEKARIIGTRALQISLNAPITIPL 89
Query: 91 EGETD---------------------PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDE 129
+G D PL IA KEL ++ IPF IRRYLP+GSYEDW ++E
Sbjct: 90 DGAADMNEENVASLGDFGDTQTAAIDPLIIAEKELYQKTIPFIIRRYLPNGSYEDWKIEE 149
Query: 130 LIVE 133
LI++
Sbjct: 150 LIID 153
>gi|154280422|ref|XP_001541024.1| DNA-directed RNA polymerases I [Ajellomyces capsulatus NAm1]
gi|150412967|gb|EDN08354.1| DNA-directed RNA polymerases I [Ajellomyces capsulatus NAm1]
Length = 177
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 48/167 (28%)
Query: 10 DMGYEDEPPE-------------PEIEEGAEEDAENINNDDINGEPIETEEKE------- 49
D G++ EPPE PE E E +N D G+P++ E +
Sbjct: 14 DAGFDYEPPEYEYIDNEPEDYVEPEQTEHGENGYAIVNGD---GQPVQNGEGDVVSGDPN 70
Query: 50 ----------EQEQKEAA---RKTSKYMTKYERARILGTRALQI------------SMNA 84
+Q +K+ R T+ YMTKYERAR+ T +L SMNA
Sbjct: 71 AGASKGKVMLQQREKKVPNDQRTTTPYMTKYERARVFHTISLSAWRIVSSVLTRVDSMNA 130
Query: 85 PVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
P++V+LEGETDPL+IA+KEL ++KIP +RRYLPDG YEDW +EL+
Sbjct: 131 PILVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 177
>gi|70944235|ref|XP_742071.1| DNA-directed RNA polymerase subunit I [Plasmodium chabaudi
chabaudi]
gi|56520843|emb|CAH77951.1| DNA-directed RNA polymerase subunit I, putative [Plasmodium
chabaudi chabaudi]
Length = 156
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 77/125 (61%), Gaps = 17/125 (13%)
Query: 24 EGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
E E D + I ++ I E + E E E E R TS Y+TKYE+ARI+GTRALQIS+N
Sbjct: 34 ENYENDIDIIADNQIKKEKYDYENCEGNE--ENIRITSPYLTKYEKARIIGTRALQISLN 91
Query: 84 APVMVELEGETD---------------PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVD 128
AP+ + +E + D PL IA +EL + IPF +RRYLP+GSYEDW +D
Sbjct: 92 APLTIPIETQNDKSNGKSDYDNYLNNDPLVIAERELYNKSIPFILRRYLPNGSYEDWRLD 151
Query: 129 ELIVE 133
ELI++
Sbjct: 152 ELIID 156
>gi|162606202|ref|XP_001713616.1| DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD
POLYPEPTIDE(RPABC6) [Guillardia theta]
gi|13794536|gb|AAK39911.1|AF165818_119 DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD
POLYPEPTIDE(RPABC6) [Guillardia theta]
Length = 126
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 59/76 (77%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T +TKYE+ARILG RALQISM AP++ E+ +D L+IA KEL ERKIP TIRRYL
Sbjct: 51 RMTLPILTKYEKARILGARALQISMGAPILTEVNTLSDSLDIASKELYERKIPITIRRYL 110
Query: 118 PDGSYEDWGVDELIVE 133
P+G YEDW ++ELI +
Sbjct: 111 PNGRYEDWKIEELIFD 126
>gi|402465615|gb|EJW01347.1| hypothetical protein EDEG_00472 [Edhazardia aedis USNM 41457]
Length = 110
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 70/100 (70%), Gaps = 5/100 (5%)
Query: 33 INNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEG 92
I N +I EP + E K K TS MTKYE+A ILG RALQISM AP +V++E
Sbjct: 13 IPNIEIFEEPAQAEFK-----KTVKNITSNRMTKYEKAHILGIRALQISMGAPPLVDIEY 67
Query: 93 ETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
ETDPL+IA+ EL ++K+PF +RR LPD SYE+W ++E+I+
Sbjct: 68 ETDPLKIALMELNQKKMPFQLRRRLPDASYEEWDINEMII 107
>gi|71028906|ref|XP_764096.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351050|gb|EAN31813.1| hypothetical protein TP04_0461 [Theileria parva]
Length = 391
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 66/100 (66%), Gaps = 21/100 (21%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGET-------------------- 94
A R TS Y+TKYE+ARI+GTRALQIS+NAP+ + ++G +
Sbjct: 292 SAHRITSPYLTKYEKARIIGTRALQISLNAPITIPIDGPSEATDDGFTTLGDFGDTQTTA 351
Query: 95 -DPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
DPL IA KEL ++ +PF +RRYLP+GSYEDW +DELI++
Sbjct: 352 IDPLIIAEKELYQKTVPFIVRRYLPNGSYEDWKIDELIID 391
>gi|449016320|dbj|BAM79722.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 166
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 89/160 (55%), Gaps = 34/160 (21%)
Query: 5 DYNDLDMGYEDEPPEPEIEEG-----------------------AEEDAENINNDDINGE 41
D D+D EDE EPE+ E DAE + + + +
Sbjct: 4 DEEDVDDYIEDEEAEPELPYDYGDDYEGEELQEESEELKESVPETEIDAEVLPDGEQEQK 63
Query: 42 PIETEEKEEQEQKEAA-----------RKTSKYMTKYERARILGTRALQISMNAPVMVEL 90
P E+ +E++ R T+ ++TKYERAR+LG RALQIS+ APV+V+L
Sbjct: 64 PTIYAGDNEKVARESSHWSKDQSDLKNRVTTPFLTKYERARVLGARALQISLGAPVLVDL 123
Query: 91 EGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 130
EGE+DPL IA KELR +KIP IRR+LP+G+YEDW V+EL
Sbjct: 124 EGESDPLLIAEKELRAKKIPLKIRRHLPNGAYEDWSVNEL 163
>gi|399217060|emb|CCF73747.1| unnamed protein product [Babesia microti strain RI]
Length = 151
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 63/94 (67%), Gaps = 14/94 (14%)
Query: 54 KEAARKTSKYMTKYERARILGTRALQISMNAPVMVELE--------------GETDPLEI 99
+ R TS Y+TKYE+ARI+GTRALQIS+NAP+ + + DPL I
Sbjct: 58 SSSNRITSPYLTKYEKARIIGTRALQISLNAPITIPFDFGEQDTIDSASMVDAAIDPLVI 117
Query: 100 AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
A KEL ++ IPFTIRRYLP+GSYEDW + ELI++
Sbjct: 118 AEKELYQKTIPFTIRRYLPNGSYEDWKIQELIID 151
>gi|82915479|ref|XP_729090.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485934|gb|EAA20655.1| Plasmodium vivax PV1H14085_P [Plasmodium yoelii yoelii]
Length = 137
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 17/125 (13%)
Query: 24 EGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
E E D + I ++ I + + E E E E R TS Y+TKYE+ARI+GTRALQIS+N
Sbjct: 15 ENYENDIDIIADNQIKKDKYDYENCEGNE--ENIRITSPYLTKYEKARIIGTRALQISLN 72
Query: 84 APVMVELEGETD---------------PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVD 128
AP+ + +E + D PL IA +EL + IPF +RRYLP+GSYEDW +D
Sbjct: 73 APLTIPIETQNDKSNGKSDYDNYLNNDPLVIAERELYNKSIPFILRRYLPNGSYEDWRLD 132
Query: 129 ELIVE 133
ELI++
Sbjct: 133 ELIID 137
>gi|156084340|ref|XP_001609653.1| DNA-directed RNA polymerase subunit I [Babesia bovis T2Bo]
gi|154796905|gb|EDO06085.1| DNA-directed RNA polymerase subunit I, putative [Babesia bovis]
Length = 154
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 68/105 (64%), Gaps = 22/105 (20%)
Query: 51 QEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVEL--------EGET-------- 94
Q + A R TS YMTKYE+ARI+GTRALQIS+NAP+ + + EG T
Sbjct: 50 QRVENAHRITSPYMTKYEKARIIGTRALQISLNAPITIPVDASMDTVDEGITMGFGESVD 109
Query: 95 ------DPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
DPL IA KEL ++ +PF IRRYLP+GSYEDW ++ELI++
Sbjct: 110 TSAAAIDPLVIAEKELYQKSVPFIIRRYLPNGSYEDWKIEELIID 154
>gi|145506493|ref|XP_001439207.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406391|emb|CAK71810.1| unnamed protein product [Paramecium tetraurelia]
Length = 156
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 59/73 (80%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T ++TKYERAR++GTRALQIS N+P+ V+ + TDP+++A +EL E KIPF IRRYL
Sbjct: 80 RITPPFLTKYERARVIGTRALQISKNSPIYVDPKETTDPIQVAQQELNENKIPFIIRRYL 139
Query: 118 PDGSYEDWGVDEL 130
P+G++EDW + EL
Sbjct: 140 PNGNFEDWELQEL 152
>gi|392512790|emb|CAD26337.2| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 116
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
Query: 27 EEDAENIN---NDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
+ED +++N ++IN E +E + + K + RKT MTKYE+A ++G RA Q+S
Sbjct: 3 KEDVDSVNEYSTEEINMEVLEISDAG-MKIKASERKTLPRMTKYEKAHVIGVRATQLSAG 61
Query: 84 APVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
AP V++ ET+PL IA EL E+KIPF IRR LPD S+EDW VDEL++
Sbjct: 62 APPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSFEDWAVDELMI 110
>gi|19173358|ref|NP_597161.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 144
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
Query: 27 EEDAENIN---NDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
+ED +++N ++IN E +E + + K + RKT MTKYE+A ++G RA Q+S
Sbjct: 31 KEDVDSVNEYSTEEINMEVLEISDAG-MKIKASERKTLPRMTKYEKAHVIGVRATQLSAG 89
Query: 84 APVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
AP V++ ET+PL IA EL E+KIPF IRR LPD S+EDW VDEL++
Sbjct: 90 APPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSFEDWAVDELMI 138
>gi|378756013|gb|EHY66038.1| DNA-directed RNA polymerase [Nematocida sp. 1 ERTm2]
Length = 122
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 61/83 (73%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
+E EQ+ R TS MTK+ERA+ILG RA QISM+AP+MVE ETDP+EIA KEL+E+K
Sbjct: 36 KEPEQEAEKRYTSPIMTKFERAKILGIRAQQISMSAPIMVEYGDETDPVEIAKKELKEKK 95
Query: 109 IPFTIRRYLPDGSYEDWGVDELI 131
P + R LPD +YE W V +LI
Sbjct: 96 TPLIVLRRLPDNTYEKWAVKDLI 118
>gi|449328894|gb|AGE95170.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 144
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 72/109 (66%), Gaps = 4/109 (3%)
Query: 27 EEDAENIN---NDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
+ED +++N ++IN E +E + K + RKT MTKYE+A ++G RA Q+S
Sbjct: 31 KEDVDSVNEYSTEEINMEVLEIS-GAGMKIKASERKTLPRMTKYEKAHVIGVRATQLSAG 89
Query: 84 APVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
AP V++ ET+PL IA EL E+KIPF IRR LPD S+EDW VDEL++
Sbjct: 90 APPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSFEDWAVDELMI 138
>gi|29841200|gb|AAP06213.1| similar to NM_080171 RNA polymerase II 18kD subunit in Drosophila
melanogaster [Schistosoma japonicum]
Length = 123
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 74/112 (66%), Gaps = 13/112 (11%)
Query: 24 EGAEEDAENINNDDINGEP-----IETEE--KEEQEQKEAA------RKTSKYMTKYERA 70
E EE + + +DD++ +P I T+E + Q AA R T+ Y+TKYERA
Sbjct: 12 ESDEEPLDEVPDDDLDTKPDGVTYITTDEVPRLSSGQSLAAPVEKSKRITTPYLTKYERA 71
Query: 71 RILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
R+LG RALQ+SM+APVMVEL+GE DPL+IA KELR KIP IRR+LPD +
Sbjct: 72 RVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDWEF 123
>gi|429329679|gb|AFZ81438.1| DNA-directed RNA polymerase subunit I, putative [Babesia equi]
Length = 151
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 21/112 (18%)
Query: 43 IETEEKEEQEQKE-AARKTSKYMTKYERARILGTRALQISMNAPVMVELE---------- 91
I T+ E + Q + A R TS Y+TKYE+ARI+GTRALQIS+NAP+ + ++
Sbjct: 40 IITDPAEFKAQIDNAHRITSPYLTKYEKARIIGTRALQISLNAPITIPIDSTDAGDDGMH 99
Query: 92 -----GET-----DPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
G+T DPL IA +EL ++ +PF +RRYLP+GSYEDW ++ELI++
Sbjct: 100 SVGDFGDTQTAAIDPLIIAERELYQKTVPFIVRRYLPNGSYEDWRIEELIID 151
>gi|340503407|gb|EGR30001.1| RNA polymerases k subunit family protein, putative
[Ichthyophthirius multifiliis]
Length = 159
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 45 TEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKE 103
++ ++ Q R T ++TKYE+ARI+GTRALQI+ N+P+ V+ E + DP+ IA KE
Sbjct: 69 VQQDHQKTQDSKQRVTPPFLTKYEKARIIGTRALQIAQNSPIYVDTDEKDYDPIAIAEKE 128
Query: 104 LRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
++KIPF IRRYLP+ SYEDW +D+L V D
Sbjct: 129 FVQKKIPFIIRRYLPNKSYEDWPLDQLEVLD 159
>gi|118402103|ref|XP_001033371.1| RNA polymerases K / 14 to 18 kDa subunit family protein
[Tetrahymena thermophila]
gi|89287719|gb|EAR85708.1| RNA polymerases K / 14 to 18 kDa subunit family protein
[Tetrahymena thermophila SB210]
Length = 163
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Query: 25 GAEEDAEN-INNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
G E ++++ ++ D+ E + ++++ +Q + T ++TKYE+ARI+GTRALQI+ N
Sbjct: 52 GTESESQSEVDKDEYPEEMVIIKDQDRDQQASKTKVTPPFLTKYEKARIIGTRALQIAQN 111
Query: 84 APVMVELE-GETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
+P+ VE + + DP+ IA KE ++KIPF IRRYLP+ YEDW +DEL V D
Sbjct: 112 SPIYVETDDKDYDPIAIAEKEFVQKKIPFIIRRYLPNKEYEDWALDELEVLD 163
>gi|387594090|gb|EIJ89114.1| hypothetical protein NEQG_00933 [Nematocida parisii ERTm3]
gi|387595709|gb|EIJ93332.1| hypothetical protein NEPG_01674 [Nematocida parisii ERTm1]
Length = 122
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 56/74 (75%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS MTK+ERA+ILG RA QISM+AP+MVE ETDP+EIA KEL+E+K P + R L
Sbjct: 45 RFTSPIMTKFERAKILGIRAQQISMSAPIMVEYGDETDPVEIAKKELKEKKTPLIVLRRL 104
Query: 118 PDGSYEDWGVDELI 131
PD +YE W V +LI
Sbjct: 105 PDNTYEKWAVKDLI 118
>gi|145501822|ref|XP_001436891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404036|emb|CAK69494.1| unnamed protein product [Paramecium tetraurelia]
Length = 156
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 57/73 (78%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R T ++TKYERAR++GTRALQIS N+P+ V+ + TDP+ +A +EL E KIPF IRRY
Sbjct: 80 RITPPFLTKYERARVIGTRALQISKNSPIYVDPKETTDPILVAQQELNENKIPFIIRRYW 139
Query: 118 PDGSYEDWGVDEL 130
P+G++EDW + EL
Sbjct: 140 PNGNFEDWELQEL 152
>gi|401827236|ref|XP_003887710.1| DNA-directed RNA polymerase [Encephalitozoon hellem ATCC 50504]
gi|392998717|gb|AFM98729.1| DNA-directed RNA polymerase [Encephalitozoon hellem ATCC 50504]
Length = 116
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 59/83 (71%)
Query: 50 EQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 109
E + K + RKT MTKYE+A ++G RA Q+S AP V++ E++PL IA EL E+KI
Sbjct: 28 EVKIKNSQRKTLPRMTKYEKAHVIGVRASQLSAGAPPFVDIGNESNPLSIANMELNEKKI 87
Query: 110 PFTIRRYLPDGSYEDWGVDELIV 132
PF IRR LPD S+EDW +DEL++
Sbjct: 88 PFIIRRRLPDNSFEDWAIDELMI 110
>gi|397578077|gb|EJK50784.1| hypothetical protein THAOC_30115 [Thalassiosira oceanica]
Length = 137
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/53 (83%), Positives = 50/53 (94%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 110
R T++Y+TKYERAR+LGTRALQISMNAPVMV+LEGETDPL+IA KELRERK P
Sbjct: 77 RITTRYLTKYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKNP 129
>gi|303390178|ref|XP_003073320.1| DNA-directed RNA polymerase subunit K [Encephalitozoon intestinalis
ATCC 50506]
gi|303302466|gb|ADM11960.1| DNA-directed RNA polymerase subunit K [Encephalitozoon intestinalis
ATCC 50506]
Length = 116
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 60/94 (63%)
Query: 39 NGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLE 98
N I + E + RKT MTKYE+A ++G RA Q+S AP V++ E++PL
Sbjct: 17 NNTEIVSMSNAEVRISSSDRKTLPRMTKYEKAHVIGVRASQLSAGAPPFVDIGNESNPLA 76
Query: 99 IAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
IA EL E+KIPF IRR LPD S+EDW +DEL++
Sbjct: 77 IANMELNEKKIPFIIRRRLPDNSFEDWAIDELMI 110
>gi|123504313|ref|XP_001328715.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Trichomonas vaginalis G3]
gi|121911662|gb|EAY16492.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Trichomonas vaginalis G3]
Length = 94
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 58/73 (79%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T++Y+TKYE+AR+LG RA+QI+ APV +++ E DPL IA +EL+++K P IRR LPD
Sbjct: 15 TTEYLTKYEKARVLGIRAMQIANGAPVQIDIGSEVDPLNIAEEELKQKKTPLIIRRTLPD 74
Query: 120 GSYEDWGVDELIV 132
G+YED V+ELIV
Sbjct: 75 GTYEDVAVNELIV 87
>gi|396081832|gb|AFN83446.1| DNA-directed RNA polymerase subunit K [Encephalitozoon romaleae
SJ-2008]
Length = 116
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 55/75 (73%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT MTKYE+A ++G RA Q+S AP V++ E++PL IA EL E+KIPF IRR L
Sbjct: 36 RKTLPRMTKYEKAHVIGVRASQLSAGAPPFVDIGNESNPLNIANMELNEKKIPFIIRRRL 95
Query: 118 PDGSYEDWGVDELIV 132
PD S+EDW +DEL++
Sbjct: 96 PDNSFEDWAIDELMI 110
>gi|123487982|ref|XP_001325065.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Trichomonas vaginalis G3]
gi|121907958|gb|EAY12842.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Trichomonas vaginalis G3]
Length = 94
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 58/73 (79%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T++Y+TKYE+AR+LG RA+QI+ APV +++ E DPL IA +EL+++K P IRR LPD
Sbjct: 15 TTEYLTKYEKARVLGIRAMQIANGAPVQIDIGSEVDPLNIAEEELKQKKTPLIIRRTLPD 74
Query: 120 GSYEDWGVDELIV 132
G+YED V+ELIV
Sbjct: 75 GTYEDVAVNELIV 87
>gi|225715738|gb|ACO13715.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Esox
lucius]
Length = 98
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Query: 28 EDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVM 87
+D EN+ +DD E ++ E Q R T+ YMTKYERAR+LGTRALQI+M APVM
Sbjct: 23 DDLENVEDDD--QENVQILPAGEGSQANQKRITTPYMTKYERARVLGTRALQIAMCAPVM 80
Query: 88 VELEGETDPLEIAMKELR 105
VELEGETDPL+IAMKEL+
Sbjct: 81 VELEGETDPLQIAMKELK 98
>gi|449525712|ref|XP_004169860.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
Length = 43
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/42 (100%), Positives = 42/42 (100%)
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 142
MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 1 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 42
>gi|429961647|gb|ELA41192.1| hypothetical protein VICG_01791 [Vittaforma corneae ATCC 50505]
Length = 100
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 59/86 (68%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
+EQE R T MT YE+A I+G RA Q++ +AP V++ D ++IA KEL ERK
Sbjct: 12 KEQEVHPKPRITLNRMTIYEKAHIIGVRAAQLNDDAPPFVDIGDLVDCIQIAKKELAERK 71
Query: 109 IPFTIRRYLPDGSYEDWGVDELIVED 134
+PF IRR LPDGS+EDW +DEL++ D
Sbjct: 72 LPFIIRRKLPDGSFEDWPIDELLIPD 97
>gi|327354456|gb|EGE83313.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis ATCC 18188]
Length = 141
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 31 ENINNDDINGEPIETEEKEEQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVM 87
ENI + D N + + +Q +K+ R T+ YMTKYERAR+LGTRALQISMNAP++
Sbjct: 59 ENIVSGDPNAGASKGKVMLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPIL 118
Query: 88 VELEGETDPLEIAMKELRERKI 109
V+LEGETDPL+IA+KEL ++K
Sbjct: 119 VDLEGETDPLQIALKELAQKKF 140
>gi|212540032|ref|XP_002150171.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces marneffei ATCC 18224]
gi|210067470|gb|EEA21562.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces marneffei ATCC 18224]
Length = 141
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 48/51 (94%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
R T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA+KEL ++K
Sbjct: 89 RSTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIALKELNQKK 139
>gi|443898341|dbj|GAC75676.1| hypothetical protein PANT_18d00010 [Pseudozyma antarctica T-34]
Length = 218
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 43/51 (84%)
Query: 82 MNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132
MNAPV+V EGETDPLEIAMKEL +KIP +RRYLPDGSYEDW V ELIV
Sbjct: 1 MNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLPDGSYEDWTVSELIV 51
>gi|159113722|ref|XP_001707087.1| DNA-directed RNA polymerase II RPB6 [Giardia lamblia ATCC 50803]
gi|25140279|gb|AAM77737.2|AF510645_1 RNA polymerase II subunit Rpb6 [Giardia intestinalis]
gi|157435189|gb|EDO79413.1| DNA-directed RNA polymerase II RPB6 [Giardia lamblia ATCC 50803]
gi|308159580|gb|EFO62107.1| DNA-directed RNA polymerase II RPB6 [Giardia lamblia P15]
Length = 104
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELE---GETDPLEIAMKELRERKIPFTIR 114
R T +Y+TK+E+ARILGTRA Q+SM AP + + G DPL +A +EL IP IR
Sbjct: 25 RITPRYLTKFEQARILGTRAYQLSMGAPAHITITDKGGHLDPLVLARRELANNAIPIIIR 84
Query: 115 RYLPDGSYEDWGVDELIVED 134
R+LPDG+YEDW + EL + D
Sbjct: 85 RHLPDGTYEDWKLSELHIID 104
>gi|253742774|gb|EES99463.1| DNA-directed RNA polymerase II RPB6 [Giardia intestinalis ATCC
50581]
Length = 104
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELE---GETDPLEIAMKELRERKIPFTIR 114
R T +Y+TK+E+ARILGTRA Q+SM AP + + G DPL +A +EL IP IR
Sbjct: 25 RITPRYLTKFEQARILGTRAYQLSMGAPAHITITDKGGHLDPLVLARRELANNAIPIIIR 84
Query: 115 RYLPDGSYEDWGVDELIVED 134
R+LPDG+YEDW + EL + D
Sbjct: 85 RHLPDGTYEDWKLSELHIID 104
>gi|123405874|ref|XP_001302693.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Trichomonas vaginalis G3]
gi|121884007|gb|EAX89763.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Trichomonas vaginalis G3]
Length = 85
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
EQE + R T+ Y+TKYERAR+LGTR +QIS+ APV ++ TDP+ IA KEL +
Sbjct: 2 SEQEAELRPRITTPYLTKYERARVLGTRGMQISLGAPVTIDAGDLTDPIAIAEKELEAGQ 61
Query: 109 IPFTIRRYLPDGSYEDWGVDELIV 132
+P IRRYLP+ YED V LI+
Sbjct: 62 LPLIIRRYLPNHEYEDVAVKYLII 85
>gi|161899317|ref|XP_001712885.1| DNA-directed RNA polymerase I, II and III [Bigelowiella natans]
gi|75756379|gb|ABA27273.1| DNA-directed RNA polymerase I, II and III [Bigelowiella natans]
Length = 115
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 53/73 (72%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R + +++K+E+A++LG RA QIS P V LEGETDPL IA+KE RE KIP IRRY
Sbjct: 39 RFSYPFISKFEKAKLLGVRAKQISNGNPPTVPLEGETDPLLIALKEYRENKIPLKIRRYF 98
Query: 118 PDGSYEDWGVDEL 130
DGSYED+ V EL
Sbjct: 99 SDGSYEDFFVWEL 111
>gi|119580606|gb|EAW60202.1| polymerase (RNA) II (DNA directed) polypeptide F, isoform CRA_a
[Homo sapiens]
Length = 118
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 55/71 (77%), Gaps = 3/71 (4%)
Query: 39 NGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLE 98
N E + + E+ + QK R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL
Sbjct: 35 NVEILPSGERPQANQK---RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLL 91
Query: 99 IAMKELRERKI 109
IAMKEL +++
Sbjct: 92 IAMKELNPKRL 102
>gi|449511854|ref|XP_002200177.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like, partial [Taeniopygia guttata]
Length = 93
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 48/56 (85%)
Query: 50 EQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR 105
E++Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+
Sbjct: 38 ERQQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 93
>gi|269859947|ref|XP_002649697.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
gi|220066892|gb|EED44362.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
Length = 75
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 55/69 (79%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
MT YE+A+I+G RA Q+S +AP +V++ TD +EIA KEL E+K+PF +RR LP+GSYE
Sbjct: 1 MTIYEKAKIIGVRATQLSDDAPPLVDIGNLTDCIEIAKKELAEKKLPFIVRRVLPNGSYE 60
Query: 124 DWGVDELIV 132
DW ++EL++
Sbjct: 61 DWKIEELLI 69
>gi|222640586|gb|EEE68718.1| hypothetical protein OsJ_27379 [Oryza sativa Japonica Group]
Length = 230
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 36 DDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETD 95
DD+ G E+ EQE+ KTSKYMTKYERARIL TRALQISMNAPVMVELEG T
Sbjct: 75 DDVVG----AEDDREQEKTARPWKTSKYMTKYERARILSTRALQISMNAPVMVELEGGTY 130
Query: 96 PLEI 99
PLE+
Sbjct: 131 PLEV 134
>gi|27817987|dbj|BAC55751.1| putative DNA-directed RNA polymerase Iia [Oryza sativa Japonica
Group]
Length = 286
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 36 DDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETD 95
DD+ G E+ EQE+ KTSKYMTKYERARIL TRALQISMNAPVMVELEG T
Sbjct: 67 DDVVG----AEDDREQEKTARPWKTSKYMTKYERARILSTRALQISMNAPVMVELEGGTY 122
Query: 96 PLEI 99
PLE+
Sbjct: 123 PLEV 126
>gi|167044366|gb|ABZ09044.1| putative RNA polymerase Rpb6 [uncultured marine crenarchaeote
HF4000_APKG6C9]
Length = 168
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
+T++E+ARI+G RALQ+S+ APV +E+ + T LEIAM+EL+++ IP I+R LP+G Y
Sbjct: 100 LTRFEKARIMGARALQLSLGAPVFIEIPKNATTSLEIAMEELKQKVIPIVIKRTLPNGDY 159
Query: 123 EDWGVD 128
++ +D
Sbjct: 160 QNLPLD 165
>gi|38569908|gb|AAR24478.1| predicted DNA-directed RNA polymerase IIb [uncultured crenarchaeote
DeepAnt-EC39]
Length = 168
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
+T++E+ARI+G RALQ+S+ APV VE+ + T L+IAM+EL++R IP I+R LP+ Y
Sbjct: 100 LTRFEKARIMGARALQLSLGAPVFVEIPKNTTTSLQIAMEELKKRVIPIVIKRTLPNQDY 159
Query: 123 EDWGVDEL 130
++ +D+
Sbjct: 160 QNIPLDKF 167
>gi|302511549|ref|XP_003017726.1| hypothetical protein ARB_04609 [Arthroderma benhamiae CBS 112371]
gi|291181297|gb|EFE37081.1| hypothetical protein ARB_04609 [Arthroderma benhamiae CBS 112371]
Length = 194
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 24/101 (23%)
Query: 29 DAENINNDDINGEPIETEEKEE------QEQKEAA---RKTSKYMTKYERARILGTRALQ 79
D + + + NG+P + + + Q +K+ A R T+ YMT
Sbjct: 104 DGQPVTTNGENGDPNASSGQGQGKTILQQREKKVANDQRTTTPYMT-------------- 149
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
+MNAP++V+LEGETDPL+IA+KEL ++KIP IRRYLPDG
Sbjct: 150 -NMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDG 189
>gi|302666747|ref|XP_003024970.1| hypothetical protein TRV_00891 [Trichophyton verrucosum HKI 0517]
gi|291189048|gb|EFE44359.1| hypothetical protein TRV_00891 [Trichophyton verrucosum HKI 0517]
Length = 194
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 24/101 (23%)
Query: 29 DAENINNDDINGEPIETEEKEE------QEQKEAA---RKTSKYMTKYERARILGTRALQ 79
D + + + NG+P + + + Q +K+ A R T+ YMT
Sbjct: 104 DGQPVTTNGENGDPNASSGQGQGKTILQQREKKVANDQRTTTPYMT-------------- 149
Query: 80 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
+MNAP++V+LEGETDPL+IA+KEL ++KIP IRRYLPDG
Sbjct: 150 -NMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDG 189
>gi|393796172|ref|ZP_10379536.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum limnia BG20]
Length = 177
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
+T++E+ARI+G RALQ+S+ AP + + + L+IAM+EL +R IP TIRR LP+G Y
Sbjct: 109 LTRFEKARIMGARALQLSLGAPTFIPIPKTARISLDIAMEELEQRVIPITIRRVLPNGDY 168
Query: 123 EDWGVD 128
++ +D
Sbjct: 169 QNIPID 174
>gi|329765266|ref|ZP_08256846.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138172|gb|EGG42428.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 177
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
+T++E+ARI+G RALQ+S+ AP + + + L+IAM+EL +R IP TIRR LP+G Y
Sbjct: 109 LTRFEKARIMGARALQLSLGAPTFIPIPKTARISLDIAMEELEQRVIPITIRRVLPNGDY 168
Query: 123 EDWGVD 128
++ +D
Sbjct: 169 QNIPID 174
>gi|407464905|ref|YP_006775787.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus sp. AR2]
gi|407048093|gb|AFS82845.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus sp. AR2]
Length = 164
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETD-PLEIAMKELRERKIPFTIRRYLPDGSY 122
+TK+E+ARI+G RALQ+S+ AP + + L+I+M+EL +R IP TIRR LP+G Y
Sbjct: 95 LTKFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGDY 154
Query: 123 EDWGVD 128
++ +D
Sbjct: 155 QNIPID 160
>gi|73668948|ref|YP_304963.1| DNA-directed RNA polymerase subunit K [Methanosarcina barkeri str.
Fusaro]
gi|72396110|gb|AAZ70383.1| DNA-directed RNA polymerase, subunit K [Methanosarcina barkeri str.
Fusaro]
Length = 60
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 43/54 (79%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++ERARI+G RALQI+M APV+VE +G DPL +A+KEL+ IP T++R
Sbjct: 5 KY-TRFERARIIGARALQIAMGAPVLVEDDGRLDPLNLAIKELKAGVIPITVKR 57
>gi|386875249|ref|ZP_10117434.1| hypothetical protein BD31_I1999 [Candidatus Nitrosopumilus salaria
BD31]
gi|386806948|gb|EIJ66382.1| hypothetical protein BD31_I1999 [Candidatus Nitrosopumilus salaria
BD31]
Length = 165
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
+T++E+ARI+G RALQ+S+ AP + + + L+I+M+EL +R IP TIRR LP+G Y
Sbjct: 96 LTRFEKARIMGARALQLSLGAPPFIPIPKNARISLDISMEELEQRVIPITIRRVLPNGDY 155
Query: 123 EDWGVD 128
++ +D
Sbjct: 156 QNIPID 161
>gi|161528440|ref|YP_001582266.1| RNA polymerase Rpb6 [Nitrosopumilus maritimus SCM1]
gi|160339741|gb|ABX12828.1| RNA polymerase Rpb6 [Nitrosopumilus maritimus SCM1]
Length = 182
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETD-PLEIAMKELRERKIPFTIRRYLPDGSY 122
+T++E+ARI+G RALQ+S+ AP + + L+I+M+EL +R IP TIRR LP+G Y
Sbjct: 113 LTRFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGDY 172
Query: 123 EDWGVD 128
++ +D
Sbjct: 173 QNIPID 178
>gi|407462558|ref|YP_006773875.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus koreensis AR1]
gi|407046180|gb|AFS80933.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus koreensis AR1]
Length = 169
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETD-PLEIAMKELRERKIPFTIRRYLPDGSY 122
+T++E+ARI+G RALQ+S+ AP + + L+I+M+EL +R IP TIRR LP+G Y
Sbjct: 100 LTRFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGDY 159
Query: 123 EDWGVD 128
++ +D
Sbjct: 160 QNIPID 165
>gi|451927638|gb|AGF85516.1| polymerase Rpb6 [Moumouvirus goulette]
Length = 314
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R+T MT YE RILGTRA Q + +A +V+ + P ++A EL + PF IRR L
Sbjct: 183 RETDPIMTYYEMVRILGTRAQQFNYSAKPLVQGVSDLHPAKMAYVELMAKMTPFIIRRNL 242
Query: 118 PDGSYEDWGVDEL 130
P YEDW + EL
Sbjct: 243 PGKKYEDWKISEL 255
>gi|118575501|ref|YP_875244.1| DNA-directed RNA polymerase, subunit K/omega [Cenarchaeum symbiosum
A]
gi|118194022|gb|ABK76940.1| DNA-directed RNA polymerase, subunit K/omega [Cenarchaeum symbiosum
A]
Length = 155
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGET-DPLEIAMKELRERKIPFTIRRYLPDGSY 122
+T++E+ARI+G RALQ+S+ AP +E+ + L+IAM EL +R IP IRR LP+G Y
Sbjct: 87 LTRFEKARIMGARALQLSLGAPPFIEIPADARTSLDIAMGELEKRIIPIVIRRVLPNGDY 146
Query: 123 EDWGVD 128
++ +
Sbjct: 147 QNIPIS 152
>gi|441432172|ref|YP_007354214.1| RNA polymerase Rpb6 [Acanthamoeba polyphaga moumouvirus]
gi|440383252|gb|AGC01778.1| RNA polymerase Rpb6 [Acanthamoeba polyphaga moumouvirus]
Length = 336
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R+T MT YE RILGTRA Q + A +V+ + P ++A EL + PF IRR L
Sbjct: 199 RETDPIMTYYEMVRILGTRAQQFNYGAKPLVQGVNDLHPAKMAYVELIAKMTPFIIRRNL 258
Query: 118 PDGSYEDWGVDEL 130
P YEDW ++EL
Sbjct: 259 PGKKYEDWKINEL 271
>gi|371945219|gb|AEX63039.1| DNA-directed RNA polymerase subunit 6 [Moumouvirus Monve]
Length = 341
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R+T MT YE RILGTRA Q + A +V+ + P ++A EL + PF IRR L
Sbjct: 199 RETDPIMTYYEMVRILGTRAQQFNYGAKPLVQGVNDLHPAKMAYVELIAKMTPFIIRRNL 258
Query: 118 PDGSYEDWGVDEL 130
P YEDW ++EL
Sbjct: 259 PGKKYEDWKINEL 271
>gi|398257060|gb|EJN40668.1| putative RNA polymerase subunit 6 [Acanthamoeba polyphaga
lentillevirus]
Length = 365
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RILGTRA Q + A P++ +EG P ++A EL + PF +RR+
Sbjct: 187 RETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTPFIVRRH 245
Query: 117 LPDGSYEDWGVDEL 130
LP YEDW +DEL
Sbjct: 246 LPGKKYEDWRIDEL 259
>gi|351737357|gb|AEQ60392.1| hypothetical protein [Acanthamoeba castellanii mamavirus]
Length = 387
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RILGTRA Q + A P++ +EG P ++A EL + PF +RR+
Sbjct: 187 RETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTPFIVRRH 245
Query: 117 LPDGSYEDWGVDEL 130
LP YEDW +DEL
Sbjct: 246 LPGKKYEDWRIDEL 259
>gi|339061142|gb|AEJ34446.1| putative RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
Length = 406
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RILGTRA Q + A P++ +EG P ++A EL + PF +RR+
Sbjct: 197 RETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTPFIVRRH 255
Query: 117 LPDGSYEDWGVDEL 130
LP YEDW +DEL
Sbjct: 256 LPGKKYEDWRIDEL 269
>gi|311977585|ref|YP_003986705.1| DNA-directed RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
gi|308204706|gb|ADO18507.1| DNA-directed RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
Length = 396
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RILGTRA Q + A P++ +EG P ++A EL + PF +RR+
Sbjct: 187 RETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTPFIVRRH 245
Query: 117 LPDGSYEDWGVDEL 130
LP YEDW +DEL
Sbjct: 246 LPGKKYEDWRIDEL 259
>gi|21227861|ref|NP_633783.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Go1]
gi|23822087|sp|Q8PW42.1|RPOK_METMA RecName: Full=DNA-directed RNA polymerase subunit K
gi|20906274|gb|AAM31455.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Go1]
Length = 83
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 41/51 (80%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++ERARI+G RALQI+M APV+VE +G DPL +A++EL+ IP T++R
Sbjct: 30 TRFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80
>gi|18285650|sp|Q9YDJ9.2|RPOK_AERPE RecName: Full=DNA-directed RNA polymerase subunit K
Length = 89
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 63 YMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
Y+TKYERARI+G RA Q+S+ AP +V+ E G +PL+IA E+ +P +I RYLP G
Sbjct: 7 YLTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGG 66
Query: 121 SYEDWGVDELI 131
+ + L+
Sbjct: 67 GGQSLSLSRLV 77
>gi|14601067|ref|NP_147593.1| DNA-directed RNA polymerase subunit K [Aeropyrum pernix K1]
gi|5104583|dbj|BAA79898.1| DNA-directed RNA polymerase subunit K [Aeropyrum pernix K1]
Length = 103
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 63 YMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
Y+TKYERARI+G RA Q+S+ AP +V+ E G +PL+IA E+ +P +I RYLP G
Sbjct: 21 YLTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGG 80
Query: 121 SYEDWGVDELI 131
+ + L+
Sbjct: 81 GGQSLSLSRLV 91
>gi|298674291|ref|YP_003726041.1| RNA polymerase Rpb6 [Methanohalobium evestigatum Z-7303]
gi|298287279|gb|ADI73245.1| RNA polymerase Rpb6 [Methanohalobium evestigatum Z-7303]
Length = 65
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 42/54 (77%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
T+YERARI+G RALQISM+AP+++E DPL++A++EL+ IP T++R L
Sbjct: 10 FTRYERARIIGARALQISMDAPILIENVENLDPLQVAIEELKHGVIPVTVKREL 63
>gi|20089488|ref|NP_615563.1| DNA-directed RNA polymerase subunit K [Methanosarcina acetivorans
C2A]
gi|23822097|sp|Q8TT40.1|RPOK_METAC RecName: Full=DNA-directed RNA polymerase subunit K
gi|19914395|gb|AAM04043.1| DNA-directed RNA polymerase, subunit K [Methanosarcina acetivorans
C2A]
Length = 60
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++ERARI+G RALQI+M APV+V+ +G DPL +A+ EL+ IP T++R
Sbjct: 5 KY-TRFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57
>gi|383320691|ref|YP_005381532.1| DNA-directed RNA polymerase subunit K [Methanocella conradii HZ254]
gi|379322061|gb|AFD01014.1| DNA-directed RNA polymerase, subunit K [Methanocella conradii
HZ254]
Length = 82
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52 EQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
+Q A KT Y T+YERARI+G RALQISM APV+++ +P+E+A+ EL IP
Sbjct: 4 KQVNVADKTMSY-TRYERARIVGARALQISMGAPVLIKDVKSVEPIEVALAELERGLIPI 62
Query: 112 TIRR 115
T++R
Sbjct: 63 TVKR 66
>gi|340344966|ref|ZP_08668098.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520107|gb|EGP93830.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 177
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETD-PLEIAMKELRERKIPFTIRRYLPDGSY 122
+T++E+ARI+G RALQ+S+ AP + + L+I+M+EL ++ IP TIRR LP+G Y
Sbjct: 109 LTRFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQKVIPITIRRVLPNGDY 168
Query: 123 EDWGVD 128
++ ++
Sbjct: 169 QNIPIE 174
>gi|408404833|ref|YP_006862816.1| DNA-directed RNA polymerase subunit K [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365429|gb|AFU59159.1| DNA-directed RNA polymerase subunit K [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 157
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 43 IETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAM 101
+E E KE + Q ++T++ERARI G+R+LQ+S+ AP ++++ E + +A+
Sbjct: 68 VEYELKEIEPQGNKVLIGPPWLTRFERARITGSRSLQLSLGAPPLIKVPEQAKSSIMLAV 127
Query: 102 KELRERKIPFTIRRYLPDGSYEDWGVD 128
+E+ + +P +IRR LP+G Y+D +D
Sbjct: 128 EEIDAKALPISIRRILPNGVYQDIPID 154
>gi|82000058|sp|Q5UQ32.1|RPO6_MIMIV RecName: Full=DNA-directed RNA polymerase subunit 6
gi|55416832|gb|AAV50482.1| putative RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
Length = 396
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RILGTRA Q + A P++ +EG P ++A EL + F +RR+
Sbjct: 187 RETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTSFIVRRH 245
Query: 117 LPDGSYEDWGVDEL 130
LP YEDW +DEL
Sbjct: 246 LPGKKYEDWRIDEL 259
>gi|124027790|ref|YP_001013110.1| DNA-directed RNA polymerase subunit K [Hyperthermus butylicus DSM
5456]
gi|123978484|gb|ABM80765.1| DNA-directed RNA polymerase subunit K [Hyperthermus butylicus DSM
5456]
Length = 102
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 45 TEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEG-----ETDPLEI 99
TEE +E K + ++T++ERAR++G RALQISM APV++++E DP+ I
Sbjct: 3 TEEYNIEELKARIKIGPPWLTRFERARVIGVRALQISMGAPVLIDVEKLPRHVREDPVLI 62
Query: 100 AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
A KEL +P TI RY G + + L+V D
Sbjct: 63 AKKELEIGVLPMTIVRYTRRGDVQPIPLKWLVVLD 97
>gi|327401470|ref|YP_004342309.1| DNA-directed RNA polymerase subunit K [Archaeoglobus veneficus
SNP6]
gi|327316978|gb|AEA47594.1| DNA-directed RNA polymerase subunit K [Archaeoglobus veneficus
SNP6]
Length = 80
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 55 EAARKTSKY-MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 113
+A+RKT + T++E+ARI+G RALQI+M APV++E + TDPLEIA +E + IP T+
Sbjct: 6 KASRKTFPFEYTRFEKARIIGARALQIAMGAPVLIETD-RTDPLEIAREEFEKGIIPITV 64
Query: 114 RR 115
RR
Sbjct: 65 RR 66
>gi|330508376|ref|YP_004384804.1| hypothetical protein MCON_2562 [Methanosaeta concilii GP6]
gi|328929184|gb|AEB68986.1| conserved domain protein [Methanosaeta concilii GP6]
Length = 59
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
K KY T+YERARI+G RALQ+ M APV+++ TDPLEIA++E+R IP T++R
Sbjct: 2 KGEKY-TRYERARIVGARALQVFMGAPVLID-TNHTDPLEIALEEMRLGVIPITVKR 56
>gi|327198714|emb|CCA61415.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
Length = 119
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 63 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 122
Y+TKYE+AR+LG R QI+ A + VE + ++A++EL +RK+P +RR++ + SY
Sbjct: 50 YLTKYEKARVLGERTKQINAGAQIFVERLCDDSDFDVALRELEQRKMPLIVRRHI-NNSY 108
Query: 123 EDWGVDELIV 132
D V++L++
Sbjct: 109 VDISVNKLLL 118
>gi|20095016|ref|NP_614863.1| DNA-directed RNA polymerase subunit K/omega [Methanopyrus kandleri
AV19]
gi|19888279|gb|AAM02793.1| DNA-directed RNA polymerase subunit K/omega [Methanopyrus kandleri
AV19]
Length = 56
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+T++E ARI+G RALQI+M +PV+VE+EG+ DPLEIA +E E +P + R
Sbjct: 4 LTRFEIARIVGARALQIAMGSPVLVEVEGDEDPLEIAKREFDEGVVPVVVIR 55
>gi|296241913|ref|YP_003649400.1| RNA polymerase Rpb6 [Thermosphaera aggregans DSM 11486]
gi|296094497|gb|ADG90448.1| RNA polymerase Rpb6 [Thermosphaera aggregans DSM 11486]
Length = 107
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGE--TDPLEIAMKELRERKIPFTIRRYLPDGS 121
+T++E ARI+G RALQ+S+ AP ++++ DP+ +A+ EL + +P +IRR + DG
Sbjct: 17 LTRFELARIIGARALQLSLGAPTLIDVASLPIKDPVAVAIYELLKTSLPMSIRRRIEDGK 76
Query: 122 YEDWGVDELIVED 134
YE V +LI D
Sbjct: 77 YELIPVGKLITTD 89
>gi|355570781|ref|ZP_09042051.1| RNA polymerase Rpb6 [Methanolinea tarda NOBI-1]
gi|354826063|gb|EHF10279.1| RNA polymerase Rpb6 [Methanolinea tarda NOBI-1]
Length = 56
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YERARI+G RALQISM AP++++ + + DPLEIA++E + IP T++R
Sbjct: 6 TRYERARIIGARALQISMGAPLLIKTD-KIDPLEIALEEFQHNVIPITVKR 55
>gi|119719208|ref|YP_919703.1| RNA polymerase Rpb6 [Thermofilum pendens Hrk 5]
gi|171704667|sp|A1RWX0.1|RPOK_THEPD RecName: Full=DNA-directed RNA polymerase subunit K
gi|119524328|gb|ABL77700.1| DNA-directed RNA polymerase, subunit K [Thermofilum pendens Hrk 5]
Length = 81
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 63 YMTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRERKIPFTIRRYLPDGS 121
++T++ERARI+G RALQIS+ APV++++ E +DP+ IA KEL +P + R+ P+G
Sbjct: 7 WLTRFERARIIGIRALQISLGAPVLIQVSEELSDPITIAEKELELGLLPIIVVRWTPEGK 66
Query: 122 YED 124
++
Sbjct: 67 IQE 69
>gi|355712732|gb|AES04447.1| polymerase II polypeptide F [Mustela putorius furo]
Length = 83
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVEL 90
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVEL
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVEL 83
>gi|336476947|ref|YP_004616088.1| RNA polymerase Rpb6 [Methanosalsum zhilinae DSM 4017]
gi|335930328|gb|AEH60869.1| RNA polymerase Rpb6 [Methanosalsum zhilinae DSM 4017]
Length = 65
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+K TKYERARI+G R+LQI+M APV++ G DPL +AM+EL + IP T++R
Sbjct: 3 TKGFTKYERARIIGARSLQIAMGAPVLINDSG-IDPLYLAMEELEQGVIPITVKR 56
>gi|254167901|ref|ZP_04874750.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
gi|289596604|ref|YP_003483300.1| RNA polymerase Rpb6 [Aciduliprofundum boonei T469]
gi|197623192|gb|EDY35758.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
gi|289534391|gb|ADD08738.1| RNA polymerase Rpb6 [Aciduliprofundum boonei T469]
Length = 57
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQISM APV++ L E DPL+IAM E + IP T++R
Sbjct: 4 TRFEKARIIGARALQISMGAPVLIHLPENIVDPLDIAMYEFEKGVIPITVKR 55
>gi|254167851|ref|ZP_04874700.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
gi|197623142|gb|EDY35708.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
Length = 57
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQISM APV++ L E DPL+IAM E + IP T++R
Sbjct: 4 TRFEKARIIGARALQISMGAPVLIHLPEDVADPLDIAMYEFEKGVIPITVKR 55
>gi|282164313|ref|YP_003356698.1| DNA-directed RNA polymerase subunit K [Methanocella paludicola
SANAE]
gi|282156627|dbj|BAI61715.1| DNA-directed RNA polymerase subunit K [Methanocella paludicola
SANAE]
Length = 73
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 57 ARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
++ +KY T+YERARI+G RALQISM APV+++ +P+E+A+ EL IP T+++
Sbjct: 4 SKNVTKY-TRYERARIVGARALQISMGAPVLMKDANSVEPIEVALAELERGLIPITVKK 61
>gi|432327998|ref|YP_007246142.1| DNA-directed RNA polymerase, subunit K/omega [Aciduliprofundum sp.
MAR08-339]
gi|432134707|gb|AGB03976.1| DNA-directed RNA polymerase, subunit K/omega [Aciduliprofundum sp.
MAR08-339]
Length = 57
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQISM APV++ L E DPL+IAM E + IP T++R
Sbjct: 4 TRFEKARIIGARALQISMGAPVLIHLPEDIVDPLDIAMYEFEKGIIPITVKR 55
>gi|15678071|ref|NP_275185.1| DNA-dependent RNA polymerase subunit K [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122767|sp|O26148.1|RPOK_METTH RecName: Full=DNA-directed RNA polymerase subunit K
gi|2621077|gb|AAB84549.1| DNA-dependent RNA polymerase, subunit K [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 61
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
SK +T++ERAR++G RALQISM A +VE++ DP++IA KEL ++ +P +RR
Sbjct: 4 ASKKLTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59
>gi|126179751|ref|YP_001047716.1| RNA polymerase Rpb6 [Methanoculleus marisnigri JR1]
gi|125862545|gb|ABN57734.1| DNA-directed RNA polymerase, subunit K [Methanoculleus marisnigri
JR1]
Length = 55
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YERARI+G RALQISM APV+V+ +T+PLEIA++E + IP T++R
Sbjct: 5 TRYERARIIGARALQISMGAPVLVK-TPKTEPLEIALEEYDQDMIPITVKR 54
>gi|310831481|ref|YP_003970124.1| putative DNA-dependent RNA polymerase subunit Rpb6 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386665|gb|ADO67525.1| putative DNA-dependent RNA polymerase subunit Rpb6 [Cafeteria
roenbergensis virus BV-PW1]
Length = 153
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 29/141 (20%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDING---EPIETEE-------KEE 50
M D D D D+ Y+DE N DDIN E +E++E KE
Sbjct: 24 MNDSDKEDNDVDYDDE-----------------NEDDINSIVSEHLESDENLVDDGLKEY 66
Query: 51 QEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 110
KE R T ++TKYE RI+GTR Q+S+ A M+++EG+ EI +E++ +P
Sbjct: 67 VVAKED-RITRPFLTKYELVRIIGTRRKQLSLGAKPMIKIEGKLSINEIVDEEIKLNMVP 125
Query: 111 FTIRRYLPDGS-YEDWGVDEL 130
I+R LPD + E W EL
Sbjct: 126 LKIKRPLPDSNKVEIWEFSEL 146
>gi|425701180|gb|AFX92342.1| DNA-directed RNA polymerase subunit 6 [Megavirus courdo11]
Length = 349
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RI+GTR Q++ +A P++ +EG P +IA EL+ + PF I+R
Sbjct: 193 RETDAVITWYEMVRIIGTRTQQLNYDAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRK 251
Query: 117 LPDGSYEDWGVDEL 130
+P YE+W +DEL
Sbjct: 252 MPGKKYEEWKIDEL 265
>gi|359416630|ref|ZP_09208926.1| DNA-directed RNA polymerase subunit K [Candidatus Haloredivivus sp.
G17]
gi|358032987|gb|EHK01596.1| DNA-directed RNA polymerase subunit K [Candidatus Haloredivivus sp.
G17]
Length = 57
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
T++ERARILG R+LQI+M APV V+ E DP+ IA KEL + ++P T++
Sbjct: 8 TRFERARILGARSLQIAMGAPVFVDAEDNEDPINIAEKELEQDRLPITVK 57
>gi|448825258|ref|YP_007418189.1| DNA-directed RNA polymerase subunit 6 [Megavirus lba]
gi|444236443|gb|AGD92213.1| DNA-directed RNA polymerase subunit 6 [Megavirus lba]
Length = 342
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RI+GTR Q++ +A P++ +EG P +IA EL+ + PF I+R
Sbjct: 189 RETDAVITWYEMVRIIGTRTQQLNYDAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRK 247
Query: 117 LPDGSYEDWGVDEL 130
+P YE+W +DEL
Sbjct: 248 MPGKKYEEWKIDEL 261
>gi|363540693|ref|YP_004894358.1| mg307 gene product [Megavirus chiliensis]
gi|350611858|gb|AEQ33302.1| DNA-directed RNA polymerase subunit 6 [Megavirus chiliensis]
Length = 339
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RI+GTR Q++ +A P++ +EG P +IA EL+ + PF I+R
Sbjct: 189 RETDAVITWYEMVRIIGTRTQQLNYDAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRK 247
Query: 117 LPDGSYEDWGVDEL 130
+P YE+W +DEL
Sbjct: 248 MPGKKYEEWKIDEL 261
>gi|18313953|ref|NP_560620.1| DNA-directed RNA polymerase subunit K [Pyrobaculum aerophilum str.
IM2]
gi|20178079|sp|Q8ZTF9.1|RPOK_PYRAE RecName: Full=DNA-directed RNA polymerase subunit K
gi|18161525|gb|AAL64802.1| DNA-directed RNA polymerase subunit [Pyrobaculum aerophilum str.
IM2]
Length = 106
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+G RALQ++M A +V+++ G DP+ IAM+ELR + F I R +PDG
Sbjct: 31 LTKYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDGK 90
Query: 122 YEDWGVDELI 131
+ EL+
Sbjct: 91 TMRIRLKELL 100
>gi|432329925|ref|YP_007248068.1| DNA-directed RNA polymerase, subunit K/omega [Methanoregula
formicicum SMSP]
gi|432136634|gb|AGB01561.1| DNA-directed RNA polymerase, subunit K/omega [Methanoregula
formicicum SMSP]
Length = 57
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YERARI+G RALQISM AP+++ DPLEIA++E IP T++R
Sbjct: 7 TRYERARIIGARALQISMGAPLLIT-TTRIDPLEIAIEEFTNNTIPITVKR 56
>gi|124486059|ref|YP_001030675.1| hypothetical protein Mlab_1239 [Methanocorpusculum labreanum Z]
gi|229564217|sp|A2SSV2.1|RPOK_METLZ RecName: Full=DNA-directed RNA polymerase subunit K
gi|124363600|gb|ABN07408.1| RNA polymerase Rpb6 [Methanocorpusculum labreanum Z]
Length = 62
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YERARI+G RALQISM APV+V+ + DPL+IA++E ++P T++R
Sbjct: 4 TRYERARIVGARALQISMGAPVLVK-TVKIDPLDIALEEFDADRVPITVKR 53
>gi|147921494|ref|YP_684691.1| DNA-directed RNA polymerase, subunit K [Methanocella arvoryzae
MRE50]
gi|110620087|emb|CAJ35365.1| DNA-directed RNA polymerase, subunit K [Methanocella arvoryzae
MRE50]
Length = 88
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YERARI+G RALQISM APV+ + +P+E+A+ EL + +P T+R+
Sbjct: 25 TRYERARIIGARALQISMGAPVLAKNPKTVEPIEVALLELEQGLVPITVRK 75
>gi|219852952|ref|YP_002467384.1| RNA polymerase Rpb6 [Methanosphaerula palustris E1-9c]
gi|219547211|gb|ACL17661.1| RNA polymerase Rpb6 [Methanosphaerula palustris E1-9c]
Length = 56
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YERARI+G R+LQISM AP++V ++DPLEIA++E + IP T++R
Sbjct: 5 TRYERARIIGARSLQISMGAPILVR-TTKSDPLEIALEEYNQGIIPITVKR 54
>gi|307352917|ref|YP_003893968.1| RNA polymerase Rpb6 [Methanoplanus petrolearius DSM 11571]
gi|307156150|gb|ADN35530.1| RNA polymerase Rpb6 [Methanoplanus petrolearius DSM 11571]
Length = 56
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 45/56 (80%), Gaps = 2/56 (3%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+ Y T+YERARI+G R+LQISM AP++V+ + + DPLEIA++E ++ IP T++R
Sbjct: 2 TTSY-TRYERARIVGARSLQISMGAPLLVKTD-KIDPLEIALEEYQKGVIPITVKR 55
>gi|11498731|ref|NP_069960.1| DNA-directed RNA polymerase subunit K [Archaeoglobus fulgidus DSM
4304]
gi|3122771|sp|O29134.1|RPOK_ARCFU RecName: Full=DNA-directed RNA polymerase subunit K
gi|2649464|gb|AAB90119.1| DNA-directed RNA polymerase, subunit K (rpoK) [Archaeoglobus
fulgidus DSM 4304]
Length = 75
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQI+M APV++E + +T+PLEIA++E IP T+RR
Sbjct: 12 TRFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61
>gi|88604127|ref|YP_504305.1| RNA polymerase Rpb6 [Methanospirillum hungatei JF-1]
gi|88189589|gb|ABD42586.1| DNA-directed RNA polymerase, subunit K [Methanospirillum hungatei
JF-1]
Length = 55
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YE+ARI+G RALQISM AP+++ DPLEIAM+E IP T++R
Sbjct: 5 TRYEKARIVGARALQISMGAPILIA-TSSIDPLEIAMEEFDREVIPITVKR 54
>gi|371943582|gb|AEX61410.1| DNA-directed RNA polymerase subunit 6 [Megavirus courdo7]
Length = 349
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RI+GTR Q++ A P++ +EG P +IA EL+ + PF I+R
Sbjct: 193 RETDAVITWYEMVRIIGTRTQQLNYEAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRK 251
Query: 117 LPDGSYEDWGVDEL 130
+P YE+W +DEL
Sbjct: 252 MPGKKYEEWKIDEL 265
>gi|374326812|ref|YP_005085012.1| DNA-directed RNA polymerase subunit K [Pyrobaculum sp. 1860]
gi|356642081|gb|AET32760.1| DNA-directed RNA polymerase subunit K [Pyrobaculum sp. 1860]
Length = 109
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+G RA+Q++M A +V+++ G TDP+ IAM+ELR + F I R PDG
Sbjct: 34 LTKYEVARIIGARAIQLAMGAQPLVDVQEVGTTDPVLIAMEELRRGLLDFVIVRETPDGK 93
Query: 122 YEDWGVDELI 131
+ EL+
Sbjct: 94 TTRIRLKELL 103
>gi|315425267|dbj|BAJ46935.1| DNA-directed RNA polymerase II subunit F [Candidatus Caldiarchaeum
subterraneum]
gi|343484345|dbj|BAJ49999.1| DNA-directed RNA polymerase subunit K [Candidatus Caldiarchaeum
subterraneum]
Length = 85
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 52 EQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
QK A+ +TKYE+ARI+G RALQ+S+ A +VE+ ++IA +E +P
Sbjct: 3 SQKTEAKTAQLRLTKYEKARIIGGRALQLSLGAFPLVEVRPGESNIDIAKREFERGVLPI 62
Query: 112 TIRRYLPDGSYEDWGVDELI 131
IRR DGSY D + EL+
Sbjct: 63 IIRRKRFDGSYVDIPLKELL 82
>gi|116753792|ref|YP_842910.1| RNA polymerase Rpb6 [Methanosaeta thermophila PT]
gi|121694449|sp|A0B6E6.1|RPOK_METTP RecName: Full=DNA-directed RNA polymerase subunit K
gi|116665243|gb|ABK14270.1| DNA-directed RNA polymerase, subunit K [Methanosaeta thermophila
PT]
Length = 60
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
K KY T++ERARI+G RALQI M APV++ + DPLEIA++E+R IP T++R
Sbjct: 2 KGEKY-TRFERARIVGARALQIFMGAPVLIRTD-SIDPLEIALEEMRLGVIPITVKR 56
>gi|154151756|ref|YP_001405374.1| RNA polymerase Rpb6 [Methanoregula boonei 6A8]
gi|154000308|gb|ABS56731.1| RNA polymerase Rpb6 [Methanoregula boonei 6A8]
Length = 57
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
++ T+YERARI+G RALQISM AP+++ DPLEIA++E IP T++R
Sbjct: 3 TQVYTRYERARIIGARALQISMGAPLLIS-TSRIDPLEIAIEEFNADIIPITVKR 56
>gi|304314292|ref|YP_003849439.1| DNA-directed RNA polymerase subunit K [Methanothermobacter
marburgensis str. Marburg]
gi|302587751|gb|ADL58126.1| DNA-directed RNA polymerase subunit K [Methanothermobacter
marburgensis str. Marburg]
Length = 59
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
SK +T++ERAR++G RALQISM A V+++ DP++IA KEL ++ +P +RR
Sbjct: 2 ASKKLTRFERARLIGARALQISMGARPQVDIQESLDPVDIARKELEKKVMPLDVRR 57
>gi|395645089|ref|ZP_10432949.1| RNA polymerase Rpb6 [Methanofollis liminatans DSM 4140]
gi|395441829|gb|EJG06586.1| RNA polymerase Rpb6 [Methanofollis liminatans DSM 4140]
Length = 57
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YE+ARI+G RALQISM APV++ G DPL IA++E +IP T+++
Sbjct: 6 TRYEKARIVGARALQISMGAPVLIP-TGNVDPLNIALEEFGLDQIPITVKK 55
>gi|315427444|dbj|BAJ49050.1| DNA-directed RNA polymerase subunit K [Candidatus Caldiarchaeum
subterraneum]
gi|315427477|dbj|BAJ49081.1| DNA-directed RNA polymerase subunit K [Candidatus Caldiarchaeum
subterraneum]
Length = 85
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 52 EQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
QK A+ +TKYE+ARI+G RALQ+S A +VE+ ++IA +E +P
Sbjct: 3 SQKTEAKTAQLRLTKYEKARIIGGRALQLSFGAFPLVEVRPGESNIDIAKREFERGVLPI 62
Query: 112 TIRRYLPDGSYEDWGVDELI 131
IRR DGSY D + EL+
Sbjct: 63 IIRRKRFDGSYVDIPLKELL 82
>gi|288932313|ref|YP_003436373.1| RNA polymerase Rpb6 [Ferroglobus placidus DSM 10642]
gi|288894561|gb|ADC66098.1| RNA polymerase Rpb6 [Ferroglobus placidus DSM 10642]
Length = 73
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQI+M APV++E + +TDPLEIA +E IP T++R
Sbjct: 10 TRFEKARIIGARALQIAMGAPVLIETD-KTDPLEIAKEEFERGVIPITVKR 59
>gi|302796815|ref|XP_002980169.1| hypothetical protein SELMODRAFT_419773 [Selaginella moellendorffii]
gi|300152396|gb|EFJ19039.1| hypothetical protein SELMODRAFT_419773 [Selaginella moellendorffii]
Length = 523
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIET--EEKEEQEQKEAAR 58
M D DYND D G+EE + + + ++ + K+ R
Sbjct: 1 MVDSDYNDFD-------------GGSEESVLPFHRLMLCIAITMSLWSPRKRLKSKKTMR 47
Query: 59 KTSKYMTKYERARILGTRA-LQISMNAPVMVELEGETDPLEIA 100
K +TKYERAR+LGT A MNAPVM ELEGETDP EIA
Sbjct: 48 KHWN-LTKYERARVLGTWASWSCYMNAPVMAELEGETDPFEIA 89
>gi|15790221|ref|NP_280045.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. NRC-1]
gi|169235950|ref|YP_001689150.1| DNA-directed RNA polymerase subunit K [Halobacterium salinarum R1]
gi|15214259|sp|Q9HQJ0.1|RPOK_HALSA RecName: Full=DNA-directed RNA polymerase subunit K
gi|229564216|sp|B0R4Y7.1|RPOK_HALS3 RecName: Full=DNA-directed RNA polymerase subunit K
gi|10580679|gb|AAG19525.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. NRC-1]
gi|167727016|emb|CAP13802.1| DNA-directed RNA polymerase subunit K [Halobacterium salinarum R1]
Length = 60
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
S++ ++YE+ARI+G RALQ++ APV+V+ + +T+P+ IA +E +PFT+RR
Sbjct: 4 SQHFSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>gi|16082173|ref|NP_394616.1| DNA-directed RNA polymerase subunit K [Thermoplasma acidophilum DSM
1728]
gi|13633844|sp|Q9HJ14.1|RPOK_THEAC RecName: Full=DNA-directed RNA polymerase subunit K
gi|10640471|emb|CAC12285.1| probable DNA-directed RNA polymerase, chain K (rpok) [Thermoplasma
acidophilum]
Length = 61
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 115
KY TK+E+ARI+G RALQI+M APV++++ + DP++IAM E IP TI++
Sbjct: 2 KY-TKFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55
>gi|261333898|emb|CBH16892.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 119
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVE--------------------LEGETDPL 97
RK+S Y+TKYE ARI+G RA QI V++E DP+
Sbjct: 16 RKSSVYLTKYEVARIIGERARQIVNGTSVLLESQNGCGTGNSLELAEGCADPFAASVDPI 75
Query: 98 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
I EL + +IP +RR PDG E+ V+EL V+
Sbjct: 76 HITKLELLQGRIPMIVRRTWPDGRTENIPVNELKVD 111
>gi|84619254|emb|CAJ43707.1| RNA polymerase I subunit 1RPB6 [Trypanosoma brucei brucei]
Length = 131
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVE--------------------LEGETDPL 97
RK+S Y+TKYE ARI+G RA QI V++E DP+
Sbjct: 28 RKSSVYLTKYEVARIIGERARQIVNGTSVLLESQNGCGTGNSLELAEGCADPFAASVDPI 87
Query: 98 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
I EL + +IP +RR PDG E+ V+EL V+
Sbjct: 88 HITKLELLQGRIPMIVRRTWPDGRTENIPVNELKVD 123
>gi|327311662|ref|YP_004338559.1| DNA-directed RNA polymerase subunit K [Thermoproteus uzoniensis
768-20]
gi|326948141|gb|AEA13247.1| DNA-directed RNA polymerase subunit K [Thermoproteus uzoniensis
768-20]
Length = 112
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 41 EPIETEEKEEQEQKEAARKTSKY---MTKYERARILGTRALQISMNAPVMVELE--GETD 95
E ++ EK Q + A S Y +T++E AR++ RALQ++M A +V++ G D
Sbjct: 9 ELVDRIEKLIQALRSALVDRSLYPPRLTRFEVARVVAARALQLAMGAQPLVDINSLGTKD 68
Query: 96 PLEIAMKELRERKIPFTIRRYLPDG 120
P+ IAM+E R+ K+ F+I R LPDG
Sbjct: 69 PVLIAMEEFRQGKLNFSIVRQLPDG 93
>gi|148643493|ref|YP_001274006.1| DNA-directed RNA polymerase, subunit K, RpoK [Methanobrevibacter
smithii ATCC 35061]
gi|222445008|ref|ZP_03607523.1| hypothetical protein METSMIALI_00624 [Methanobrevibacter smithii
DSM 2375]
gi|288869703|ref|ZP_05975839.2| RNA polymerase [Methanobrevibacter smithii DSM 2374]
gi|148552510|gb|ABQ87638.1| DNA-directed RNA polymerase, subunit K, RpoK [Methanobrevibacter
smithii ATCC 35061]
gi|222434573|gb|EEE41738.1| RNA polymerases K / 14 to 18 kDa subunit [Methanobrevibacter
smithii DSM 2375]
gi|288861205|gb|EFC93503.1| RNA polymerase [Methanobrevibacter smithii DSM 2374]
Length = 65
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
E T++ +T++ERAR+LG RA+QISM A +VE+ DP++IA +EL+ +P +
Sbjct: 2 EVIFMTTENLTRFERARLLGARAIQISMGAKPLVEIGDSLDPIDIAYEELKAGVLPLDVI 61
Query: 115 RY 116
RY
Sbjct: 62 RY 63
>gi|257076296|ref|ZP_05570657.1| DNA-directed RNA polymerase subunit K [Ferroplasma acidarmanus
fer1]
Length = 56
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRERKIPFTIRR 115
+TK+E+ARI+G RALQI+M APV++++ + DP++IA+ E IP TIRR
Sbjct: 3 LTKFEKARIIGARALQIAMGAPVILDVSPDMIDPIDIAIFEFDNGVIPITIRR 55
>gi|300711106|ref|YP_003736920.1| RNA polymerase Rpb6 [Halalkalicoccus jeotgali B3]
gi|448296795|ref|ZP_21486846.1| DNA-directed RNA polymerase subunit K [Halalkalicoccus jeotgali B3]
gi|299124789|gb|ADJ15128.1| RNA polymerase Rpb6 [Halalkalicoccus jeotgali B3]
gi|445580778|gb|ELY35152.1| DNA-directed RNA polymerase subunit K [Halalkalicoccus jeotgali B3]
Length = 59
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
TS+ ++YE+ARILG RALQ+S APV++E + +++P+ IA +E +PFT++R
Sbjct: 2 TSQQFSRYEKARILGARALQVSYGAPVLIETD-QSEPILIAAEEYDAGALPFTVKR 56
>gi|333987640|ref|YP_004520247.1| RNA polymerase Rpb6 [Methanobacterium sp. SWAN-1]
gi|333825784|gb|AEG18446.1| RNA polymerase Rpb6 [Methanobacterium sp. SWAN-1]
Length = 57
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+K +T++E+AR++G RALQ+SM A V++ DP++IA EL++ K+P ++R
Sbjct: 3 AKKLTRFEKARVIGARALQLSMGAKPQVDVSASIDPIDIATLELKKNKLPLDVKR 57
>gi|424812142|ref|ZP_18237382.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756364|gb|EGQ39947.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalinarum
sp. J07AB56]
Length = 54
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
K +T+YE+ARI+G R+LQ++M AP MV+ + +DP+EIA EL E IP TI++
Sbjct: 2 KELTRYEKARIVGARSLQLAMGAPRMVDTDS-SDPMEIAEHELEEGNIPITIQK 54
>gi|126460377|ref|YP_001056655.1| DNA-directed RNA polymerase subunit K [Pyrobaculum calidifontis JCM
11548]
gi|126250098|gb|ABO09189.1| DNA-directed RNA polymerase, subunit K [Pyrobaculum calidifontis
JCM 11548]
Length = 110
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+G RA Q++M A +V++ G DP+ IAM+ELR+ + F I R LPDG
Sbjct: 35 LTKYEIARIIGARATQLAMGAQPLVDVRQLGTIDPVLIAMEELRQGLLDFIIVRELPDGR 94
Query: 122 YEDWGVDELI 131
+ EL+
Sbjct: 95 AIRVTLKELL 104
>gi|13542056|ref|NP_111744.1| DNA-directed RNA polymerase subunit K [Thermoplasma volcanium GSS1]
gi|15214256|sp|P58232.1|RPOK_THEVO RecName: Full=DNA-directed RNA polymerase subunit K
gi|14325487|dbj|BAB60391.1| DNA-directed RNA polymerase K [Thermoplasma volcanium GSS1]
Length = 61
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 115
KY TK+E+ARI+G RALQI+M APV++++ + DP++IA E IP TI+R
Sbjct: 2 KY-TKFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55
>gi|297527158|ref|YP_003669182.1| RNA polymerase Rpb6 [Staphylothermus hellenicus DSM 12710]
gi|297256074|gb|ADI32283.1| RNA polymerase Rpb6 [Staphylothermus hellenicus DSM 12710]
Length = 104
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+T++E AR++G RALQ+S+ AP ++ E DP+ IA+ EL + +P TI+R +P+G
Sbjct: 14 LTRFEIARVIGARALQLSLGAPPLINPEEAPVKDPVAIAILELLKGLLPMTIKRMMPNGE 73
Query: 122 YE 123
YE
Sbjct: 74 YE 75
>gi|269862226|ref|XP_002650754.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
gi|220065668|gb|EED43303.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
Length = 57
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 113
MT YE+A+I+G RA Q+S +AP +V++ TD +EIA KEL E+K+PF +
Sbjct: 1 MTIYEKAKIIGVRATQLSDDAPPLVDIGNLTDCIEIAKKELAEKKLPFIV 50
>gi|435851776|ref|YP_007313362.1| DNA-directed RNA polymerase, subunit K/omega [Methanomethylovorans
hollandica DSM 15978]
gi|433662406|gb|AGB49832.1| DNA-directed RNA polymerase, subunit K/omega [Methanomethylovorans
hollandica DSM 15978]
Length = 62
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
++++ T+YERARI+G R+LQISM APV+++ G T L IA KEL IP T++R
Sbjct: 2 STEHYTRYERARIIGARSLQISMGAPVLIDDPG-TQSLYIAKKELELGVIPITVKR 56
>gi|424814623|ref|ZP_18239801.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalina sp.
J07AB43]
gi|339758239|gb|EGQ43496.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalina sp.
J07AB43]
Length = 54
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
T+YE+ARILG R+LQ++ AP VE E PLEI+ +EL + K+P T++
Sbjct: 5 TRYEKARILGARSLQLAQGAPAFVEAEEHEKPLEISKRELSQGKLPITVK 54
>gi|15897794|ref|NP_342399.1| DNA-directed RNA polymerase subunit K [Sulfolobus solfataricus P2]
gi|284175597|ref|ZP_06389566.1| DNA-directed RNA polymerase subunit K [Sulfolobus solfataricus
98/2]
gi|384434343|ref|YP_005643701.1| RNA polymerase Rpb6 [Sulfolobus solfataricus 98/2]
gi|15214257|sp|Q97ZJ9.1|RPOK_SULSO RecName: Full=DNA-directed RNA polymerase subunit K
gi|167744888|pdb|2PMZ|K Chain K, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744899|pdb|2PMZ|W Chain W, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782151|pdb|3HKZ|K Chain K, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782164|pdb|3HKZ|U Chain U, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13814087|gb|AAK41189.1| DNA-directed RNA polymerase subunit K (rpoK) [Sulfolobus
solfataricus P2]
gi|261602497|gb|ACX92100.1| RNA polymerase Rpb6 [Sulfolobus solfataricus 98/2]
Length = 95
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E R +P TIRR LP+G
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNG 85
>gi|448348759|ref|ZP_21537607.1| RNA polymerase Rpb6 [Natrialba taiwanensis DSM 12281]
gi|448368981|ref|ZP_21555748.1| RNA polymerase Rpb6 [Natrialba aegyptia DSM 13077]
gi|445642420|gb|ELY95488.1| RNA polymerase Rpb6 [Natrialba taiwanensis DSM 12281]
gi|445651524|gb|ELZ04432.1| RNA polymerase Rpb6 [Natrialba aegyptia DSM 13077]
Length = 58
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
++ +YE+ARILG RALQ+S APV++E E +T+P+ IA +E +PFT++R
Sbjct: 4 QHHNRYEKARILGARALQVSYGAPVLIETE-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|237823483|pdb|2WAQ|K Chain K, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823498|pdb|2WB1|I Chain I, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823500|pdb|2WB1|K Chain K, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
Length = 95
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E R +P TIRR LP+G
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNG 85
>gi|374628600|ref|ZP_09700985.1| DNA-directed RNA polymerase, subunit K [Methanoplanus limicola DSM
2279]
gi|373906713|gb|EHQ34817.1| DNA-directed RNA polymerase, subunit K [Methanoplanus limicola DSM
2279]
Length = 55
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YERARI+G R+LQISM AP++V+ + DPLEIA++E IP T++R
Sbjct: 5 TRYERARIVGARSLQISMGAPLLVKTD-RIDPLEIALEEYELGVIPITVKR 54
>gi|294496194|ref|YP_003542687.1| DNA-directed RNA polymerase, subunit K [Methanohalophilus mahii DSM
5219]
gi|292667193|gb|ADE37042.1| DNA-directed RNA polymerase, subunit K [Methanohalophilus mahii DSM
5219]
Length = 60
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
TKYERARI+G R+LQI+M APV+++++ D L+IA E + IP T++R
Sbjct: 6 FTKYERARIIGARSLQIAMEAPVLIDIDSN-DSLQIAKVEFEKGVIPITVKR 56
>gi|448361730|ref|ZP_21550343.1| RNA polymerase Rpb6 [Natrialba asiatica DSM 12278]
gi|445649410|gb|ELZ02347.1| RNA polymerase Rpb6 [Natrialba asiatica DSM 12278]
Length = 57
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
++ +YE+ARILG RALQ+S APV++E E +T+P+ IA +E +PFT++R
Sbjct: 3 QHHNRYEKARILGARALQVSYGAPVLIETE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|71754395|ref|XP_828112.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|70833498|gb|EAN79000.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 131
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVE--------------------LEGETDPL 97
RK+S Y+TKYE ARI+G RA QI V+++ DP+
Sbjct: 28 RKSSVYLTKYEVARIIGERARQIVNGTSVLLDSQNGCGTGNSLELAEGCADPFAASVDPI 87
Query: 98 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
I EL + +IP +RR PDG E+ V+EL V+
Sbjct: 88 HITKLELLQGRIPMIVRRTWPDGRTENIPVNELKVD 123
>gi|298205351|ref|YP_003717803.1| DNA-directed RNA polymerase subunit K [Staphylothermus marinus F1]
Length = 106
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+T++E AR++G RALQ+S+ AP ++ + DP+ IA+ EL + +P TI+R +P+G
Sbjct: 16 LTRFEIARVIGARALQLSLGAPPLINPDEAPVKDPVAIAILELLKGLLPMTIKRMMPNGE 75
Query: 122 YEDWGVDELIVEDS 135
YE V + + D+
Sbjct: 76 YELVPVSKALSPDN 89
>gi|342185146|emb|CCC94629.1| putative DNA-directed RNA polymerase subunit [Trypanosoma
congolense IL3000]
Length = 130
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 20/98 (20%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVE-------------LEGET-------DPL 97
R++ Y+TKYE ARILG RA QI ++++ EG T DP+
Sbjct: 29 RRSGVYLTKYEVARILGERARQIVNGTSLVLDSNSHRGEMSSLEIAEGCTNPYAAAVDPI 88
Query: 98 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
I+ EL ++KIP +RR PDG E+ V EL+V+ +
Sbjct: 89 YISKVELLQKKIPMIVRRIWPDGWCENIPVSELLVDKA 126
>gi|284161251|ref|YP_003399874.1| RNA polymerase Rpb6 [Archaeoglobus profundus DSM 5631]
gi|284011248|gb|ADB57201.1| RNA polymerase Rpb6 [Archaeoglobus profundus DSM 5631]
Length = 73
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ RI+G RALQI++ APV++E + +TDPLEIA +E IP T+RR
Sbjct: 10 TRFEKVRIIGARALQIALGAPVLIETD-KTDPLEIAREEFERGVIPITVRR 59
>gi|435847143|ref|YP_007309393.1| DNA-directed RNA polymerase, subunit K/omega [Natronococcus
occultus SP4]
gi|433673411|gb|AGB37603.1| DNA-directed RNA polymerase, subunit K/omega [Natronococcus
occultus SP4]
Length = 60
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV+VE + +++P+ IA +E +PFT+RR
Sbjct: 8 RYEKARILGARALQISYGAPVLVETD-QSEPILIAAEEYDAGALPFTVRR 56
>gi|448611947|ref|ZP_21662377.1| DNA-directed RNA polymerase subunit K [Haloferax mucosum ATCC
BAA-1512]
gi|445742708|gb|ELZ94202.1| DNA-directed RNA polymerase subunit K [Haloferax mucosum ATCC
BAA-1512]
Length = 58
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV+VE E +T+P+ IA +E +PFT++R
Sbjct: 7 RYEKARILGARALQISYGAPVLVESE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|448460448|ref|ZP_21597273.1| DNA-directed RNA polymerase subunit K [Halorubrum lipolyticum DSM
21995]
gi|445807189|gb|EMA57275.1| DNA-directed RNA polymerase subunit K [Halorubrum lipolyticum DSM
21995]
Length = 59
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E + +T+P+ +A +E +PFT+RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|448400366|ref|ZP_21571358.1| RNA polymerase Rpb6 [Haloterrigena limicola JCM 13563]
gi|445667389|gb|ELZ20032.1| RNA polymerase Rpb6 [Haloterrigena limicola JCM 13563]
Length = 61
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E E +T+P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETE-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|389848209|ref|YP_006350448.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei ATCC
33500]
gi|448618417|ref|ZP_21666654.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei ATCC
33500]
gi|388245515|gb|AFK20461.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei ATCC
33500]
gi|445746788|gb|ELZ98246.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei ATCC
33500]
Length = 58
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+VE E +T+P+ IA +E +PFT++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLVETE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|448578445|ref|ZP_21643880.1| DNA-directed RNA polymerase subunit K [Haloferax larsenii JCM
13917]
gi|445726986|gb|ELZ78602.1| DNA-directed RNA polymerase subunit K [Haloferax larsenii JCM
13917]
Length = 57
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+VE E +T+P+ IA +E +PFT++R
Sbjct: 6 RYEKARILGARALQVSYGAPVLVESE-QTEPILIAAEEYDAGVLPFTVKR 54
>gi|307595318|ref|YP_003901635.1| RNA polymerase Rpb6 [Vulcanisaeta distributa DSM 14429]
gi|307550519|gb|ADN50584.1| RNA polymerase Rpb6 [Vulcanisaeta distributa DSM 14429]
Length = 117
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+ RA Q++M A ++ + G DP++IAM+E+R +PF I R LP+G
Sbjct: 38 ITKYELARIVAARAKQLAMGAQPLINPQELGTFDPIDIAMEEVRRGLLPFIIVRTLPNGK 97
Query: 122 YEDWGVDELI 131
+ + +L+
Sbjct: 98 HVRIKLKDLL 107
>gi|323462796|pdb|2Y0S|I Chain I, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462798|pdb|2Y0S|K Chain K, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260750|pdb|4AYB|K Chain K, Rnap At 3.2ang
gi|400260767|pdb|4B1O|K Chain K, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260776|pdb|4B1P|I Chain I, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814445|gb|ACL36496.1| RNA polymerase subunit 6 [Sulfolobus shibatae B12]
Length = 95
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E + +P TIRR LP+G
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISSTDVISIAEEEFKRGVLPITIRRRLPNG 85
>gi|397772876|ref|YP_006540422.1| RNA polymerase Rpb6 [Natrinema sp. J7-2]
gi|448337136|ref|ZP_21526218.1| RNA polymerase Rpb6 [Natrinema pallidum DSM 3751]
gi|448340560|ref|ZP_21529531.1| RNA polymerase Rpb6 [Natrinema gari JCM 14663]
gi|448346275|ref|ZP_21535161.1| RNA polymerase Rpb6 [Natrinema altunense JCM 12890]
gi|397681969|gb|AFO56346.1| RNA polymerase Rpb6 [Natrinema sp. J7-2]
gi|445626482|gb|ELY79825.1| RNA polymerase Rpb6 [Natrinema pallidum DSM 3751]
gi|445629993|gb|ELY83263.1| RNA polymerase Rpb6 [Natrinema gari JCM 14663]
gi|445632864|gb|ELY86070.1| RNA polymerase Rpb6 [Natrinema altunense JCM 12890]
Length = 61
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E E +T P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETE-QTQPILIAAEEYDAGVLPFTVKR 56
>gi|433590982|ref|YP_007280478.1| DNA-directed RNA polymerase, subunit K/omega [Natrinema pellirubrum
DSM 15624]
gi|448334515|ref|ZP_21523690.1| RNA polymerase Rpb6 [Natrinema pellirubrum DSM 15624]
gi|448385457|ref|ZP_21563963.1| RNA polymerase Rpb6 [Haloterrigena thermotolerans DSM 11522]
gi|433305762|gb|AGB31574.1| DNA-directed RNA polymerase, subunit K/omega [Natrinema pellirubrum
DSM 15624]
gi|445619847|gb|ELY73364.1| RNA polymerase Rpb6 [Natrinema pellirubrum DSM 15624]
gi|445656952|gb|ELZ09784.1| RNA polymerase Rpb6 [Haloterrigena thermotolerans DSM 11522]
Length = 60
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E E +T P+ IA +E +PFT++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLIETE-QTQPILIAAEEYDAGVLPFTVKR 55
>gi|354610850|ref|ZP_09028806.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. DL1]
gi|353195670|gb|EHB61172.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. DL1]
Length = 59
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
++ +YE+ARI+G RALQ+S APV+V+ + +T+P+ IA +E +PFT+RR
Sbjct: 5 QHFNRYEKARIIGARALQVSYGAPVLVDTD-QTEPILIAAEEYDAEVLPFTVRR 57
>gi|18978014|ref|NP_579371.1| DNA-directed RNA polymerase subunit K [Pyrococcus furiosus DSM
3638]
gi|397652709|ref|YP_006493290.1| DNA-directed RNA polymerase subunit K [Pyrococcus furiosus COM1]
gi|23822103|sp|Q8U0E8.1|RPOK_PYRFU RecName: Full=DNA-directed RNA polymerase subunit K
gi|18893795|gb|AAL81766.1| DNA-directed RNA polymerase subunit k [Pyrococcus furiosus DSM
3638]
gi|393190300|gb|AFN04998.1| DNA-directed RNA polymerase subunit K [Pyrococcus furiosus COM1]
Length = 57
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQISM APV++++ PLE A+ E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55
>gi|171185975|ref|YP_001794894.1| DNA-directed RNA polymerase subunit K [Pyrobaculum neutrophilum
V24Sta]
gi|170935187|gb|ACB40448.1| RNA polymerase Rpb6 [Pyrobaculum neutrophilum V24Sta]
Length = 109
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+TKYE ARILG RA+Q++M A +V++ G TDP+ IA +EL+ + F I R LPDG
Sbjct: 34 LTKYEIARILGARAMQLAMGAQPLVDVRELGTTDPVLIAAEELKRGLLDFIIVRELPDG 92
>gi|448465598|ref|ZP_21598864.1| DNA-directed RNA polymerase subunit K [Halorubrum kocurii JCM
14978]
gi|445814930|gb|EMA64878.1| DNA-directed RNA polymerase subunit K [Halorubrum kocurii JCM
14978]
Length = 59
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E + +T+P+ +A +E +PFT+RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|389852935|ref|YP_006355169.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. ST04]
gi|388250241|gb|AFK23094.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. ST04]
Length = 57
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQI+M APV++++ T PLE A+ E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQIAMGAPVLIDVPEGTTPLEAAILEFEKGIIPITVIR 55
>gi|448409414|ref|ZP_21574712.1| RNA polymerase Rpb6 [Halosimplex carlsbadense 2-9-1]
gi|445673017|gb|ELZ25584.1| RNA polymerase Rpb6 [Halosimplex carlsbadense 2-9-1]
Length = 58
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
S+ +YE+ARI+G RALQ++ APV+V+ E +T P+ IA +E +PFT+RR
Sbjct: 2 SQSYNRYEKARIIGARALQVAYGAPVLVDTE-QTQPILIAAEEYDSGALPFTVRR 55
>gi|448474330|ref|ZP_21602189.1| RNA polymerase Rpb6 [Halorubrum aidingense JCM 13560]
gi|445817637|gb|EMA67506.1| RNA polymerase Rpb6 [Halorubrum aidingense JCM 13560]
Length = 59
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E +T+P+ +A +E +PFT+RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIE-TNQTEPILVAAEEYDAGALPFTVRR 56
>gi|322369529|ref|ZP_08044094.1| RNA polymerase Rpb6 [Haladaptatus paucihalophilus DX253]
gi|320551261|gb|EFW92910.1| RNA polymerase Rpb6 [Haladaptatus paucihalophilus DX253]
Length = 60
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
++YE+ARILG RALQ+S APV++E + E+ P+ IA +E +PF++RR
Sbjct: 7 SRYEKARILGARALQVSYGAPVLIETQ-ESQPILIAAEEYDAGVLPFSVRR 56
>gi|399576708|ref|ZP_10770463.1| DNA-directed RNA polymerase subunit K [Halogranum salarium B-1]
gi|399238152|gb|EJN59081.1| DNA-directed RNA polymerase subunit K [Halogranum salarium B-1]
Length = 60
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T + +YE+ARILG RALQ+S APV+++ E ET+P+ IA +E +PFT++R
Sbjct: 3 TVQRYNRYEKARILGARALQVSYGAPVLIDTE-ETEPILIAAEEYDAGVLPFTVKR 57
>gi|448330857|ref|ZP_21520133.1| RNA polymerase Rpb6 [Natrinema versiforme JCM 10478]
gi|445610693|gb|ELY64462.1| RNA polymerase Rpb6 [Natrinema versiforme JCM 10478]
Length = 61
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV+ E E +T P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQISYGAPVLTETE-QTQPILIAAEEYDAGVLPFTVKR 56
>gi|347524483|ref|YP_004782053.1| RNA polymerase Rpb6 [Pyrolobus fumarii 1A]
gi|343461365|gb|AEM39801.1| RNA polymerase Rpb6 [Pyrolobus fumarii 1A]
Length = 113
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEG-----ETDPLEIAMKE 103
E E++ + ++T++ERARI+G RALQ+S+ AP +++ DP+ +A E
Sbjct: 2 SEAEKRFEVKIGPPWLTRFERARIIGARALQLSLGAPPLIDTSRLHPRIREDPVLVARVE 61
Query: 104 LRERKIPFTIRRYLPDGSYEDWGVDELI-----VEDSWKR 138
L E +P T+ RY G Y+ + L+ VE W R
Sbjct: 62 LAEGVLPITVLRYTRRGEYQAIPLQVLLEGMKRVEKYWTR 101
>gi|452207488|ref|YP_007487610.1| DNA-directed RNA polymerase subunit K [Natronomonas moolapensis
8.8.11]
gi|452083588|emb|CCQ36900.1| DNA-directed RNA polymerase subunit K [Natronomonas moolapensis
8.8.11]
Length = 57
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+++ + +T+P+ +A +E +PFT+RR
Sbjct: 6 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDANALPFTVRR 54
>gi|84489663|ref|YP_447895.1| RpoK [Methanosphaera stadtmanae DSM 3091]
gi|84372982|gb|ABC57252.1| RpoK [Methanosphaera stadtmanae DSM 3091]
Length = 63
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
S+ T++ERAR++G+RALQISM A +VE + DP++IA+KE E IP
Sbjct: 3 SRNNTRFERARLIGSRALQISMGANPLVEFTPDQDPIKIAIKEYEEGVIPL 53
>gi|448391694|ref|ZP_21566789.1| RNA polymerase Rpb6 [Haloterrigena salina JCM 13891]
gi|445665106|gb|ELZ17784.1| RNA polymerase Rpb6 [Haloterrigena salina JCM 13891]
Length = 61
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV+VE + +++P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQISYGAPVLVETD-QSEPILIAAEEYDAEVLPFTVKR 56
>gi|91774301|ref|YP_566993.1| DNA-directed RNA polymerase, subunit K [Methanococcoides burtonii
DSM 6242]
gi|91713316|gb|ABE53243.1| DNA-directed RNA polymerase subunit K [Methanococcoides burtonii
DSM 6242]
Length = 63
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
T+YERARI+G R+LQI+M AP+++E + TD L +A E + IP T++R L
Sbjct: 11 TRYERARIIGARSLQIAMGAPILIE-DDNTDALYLATLEFEKGVIPITVKRNL 62
>gi|385773256|ref|YP_005645822.1| RNA polymerase Rpb6 [Sulfolobus islandicus HVE10/4]
gi|385775890|ref|YP_005648458.1| RNA polymerase Rpb6 [Sulfolobus islandicus REY15A]
gi|323474638|gb|ADX85244.1| RNA polymerase Rpb6 [Sulfolobus islandicus REY15A]
gi|323477370|gb|ADX82608.1| RNA polymerase Rpb6 [Sulfolobus islandicus HVE10/4]
Length = 87
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E + +P TIRR LP+G
Sbjct: 19 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPNG 77
>gi|227827586|ref|YP_002829366.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
M.14.25]
gi|229584790|ref|YP_002843292.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
M.16.27]
gi|238619744|ref|YP_002914570.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
M.16.4]
gi|259494221|sp|C3N5H2.1|RPOK_SULIA RecName: Full=DNA-directed RNA polymerase subunit K
gi|259494222|sp|C4KH38.1|RPOK_SULIK RecName: Full=DNA-directed RNA polymerase subunit K
gi|259494223|sp|C3MUV8.1|RPOK_SULIM RecName: Full=DNA-directed RNA polymerase subunit K
gi|227459382|gb|ACP38068.1| RNA polymerase Rpb6 [Sulfolobus islandicus M.14.25]
gi|228019840|gb|ACP55247.1| RNA polymerase Rpb6 [Sulfolobus islandicus M.16.27]
gi|238380814|gb|ACR41902.1| RNA polymerase Rpb6 [Sulfolobus islandicus M.16.4]
Length = 95
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E + +P TIRR LP+G
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPNG 85
>gi|448431133|ref|ZP_21584961.1| DNA-directed RNA polymerase subunit K [Halorubrum tebenquichense
DSM 14210]
gi|448491309|ref|ZP_21608250.1| DNA-directed RNA polymerase subunit K [Halorubrum californiensis
DSM 19288]
gi|445688280|gb|ELZ40545.1| DNA-directed RNA polymerase subunit K [Halorubrum tebenquichense
DSM 14210]
gi|445693080|gb|ELZ45242.1| DNA-directed RNA polymerase subunit K [Halorubrum californiensis
DSM 19288]
Length = 58
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+++ + +T+P+ +A +E +PFT+RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|222480236|ref|YP_002566473.1| RNA polymerase Rpb6 [Halorubrum lacusprofundi ATCC 49239]
gi|448440163|ref|ZP_21588411.1| DNA-directed RNA polymerase subunit K [Halorubrum saccharovorum DSM
1137]
gi|254765434|sp|B9LPW5.1|RPOK_HALLT RecName: Full=DNA-directed RNA polymerase subunit K
gi|222453138|gb|ACM57403.1| RNA polymerase Rpb6 [Halorubrum lacusprofundi ATCC 49239]
gi|445690680|gb|ELZ42890.1| DNA-directed RNA polymerase subunit K [Halorubrum saccharovorum DSM
1137]
Length = 59
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+++ + +T+P+ +A +E +PFT+RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|448314279|ref|ZP_21503979.1| DNA-directed RNA polymerase subunit K [Natronolimnobius
innermongolicus JCM 12255]
gi|445595539|gb|ELY49645.1| DNA-directed RNA polymerase subunit K [Natronolimnobius
innermongolicus JCM 12255]
Length = 58
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+VE + ++ P+ IA +E +PFT++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLVETD-QSQPILIAAEEYDAGALPFTVKR 55
>gi|385806035|ref|YP_005842433.1| DNA-directed RNA polymerase subunit K [Fervidicoccus fontis Kam940]
gi|383795898|gb|AFH42981.1| DNA-directed RNA polymerase subunit K [Fervidicoccus fontis Kam940]
Length = 98
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEG-ETDPLEIAMKELRERKIPFTIRRYL 117
K +T++ERARI+G RALQ+SM AP +++ DP+ IA KEL +P TI R+L
Sbjct: 16 KKLTRFERARIIGARALQLSMGAPPFIDVSNLPKDPIIIAEKELEMGVLPLTIVRWL 72
>gi|448592483|ref|ZP_21651590.1| DNA-directed RNA polymerase subunit K [Haloferax elongans ATCC
BAA-1513]
gi|445731488|gb|ELZ83072.1| DNA-directed RNA polymerase subunit K [Haloferax elongans ATCC
BAA-1513]
Length = 57
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+VE + +T+P+ IA +E +PFT++R
Sbjct: 6 RYEKARILGARALQVSYGAPVLVESD-QTEPILIAAEEYDAGVLPFTVKR 54
>gi|227830274|ref|YP_002832054.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
L.S.2.15]
gi|229579099|ref|YP_002837497.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
Y.G.57.14]
gi|229582160|ref|YP_002840559.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
Y.N.15.51]
gi|284997697|ref|YP_003419464.1| RNA polymerase Rpb6 [Sulfolobus islandicus L.D.8.5]
gi|227456722|gb|ACP35409.1| RNA polymerase Rpb6 [Sulfolobus islandicus L.S.2.15]
gi|228009813|gb|ACP45575.1| RNA polymerase Rpb6 [Sulfolobus islandicus Y.G.57.14]
gi|228012876|gb|ACP48637.1| RNA polymerase Rpb6 [Sulfolobus islandicus Y.N.15.51]
gi|284445592|gb|ADB87094.1| RNA polymerase Rpb6 [Sulfolobus islandicus L.D.8.5]
Length = 87
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E + +P TIRR LP+G
Sbjct: 19 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPNG 77
>gi|305663583|ref|YP_003859871.1| DNA-directed RNA polymerase subunit K [Ignisphaera aggregans DSM
17230]
gi|304378152|gb|ADM27991.1| DNA-directed RNA polymerase, subunit K [Ignisphaera aggregans DSM
17230]
Length = 117
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRERKIPFTIRRYLPD 119
K +TKYE+ARI+ RALQ++M AP ++++ DP+ IA +EL +P I+R P+
Sbjct: 21 KRLTKYEKARIVAARALQLAMGAPPLIDISSLQNKDPVIIAERELLLGVLPILIKREKPN 80
Query: 120 GSYE 123
G Y+
Sbjct: 81 GEYQ 84
>gi|448425444|ref|ZP_21582774.1| DNA-directed RNA polymerase subunit K [Halorubrum terrestre JCM
10247]
gi|448453311|ref|ZP_21593754.1| DNA-directed RNA polymerase subunit K [Halorubrum litoreum JCM
13561]
gi|448485421|ref|ZP_21606646.1| DNA-directed RNA polymerase subunit K [Halorubrum arcis JCM 13916]
gi|448504674|ref|ZP_21614015.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
9100]
gi|448519091|ref|ZP_21617867.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
10118]
gi|445680515|gb|ELZ32958.1| DNA-directed RNA polymerase subunit K [Halorubrum terrestre JCM
10247]
gi|445701884|gb|ELZ53856.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
9100]
gi|445704107|gb|ELZ56025.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
10118]
gi|445807631|gb|EMA57714.1| DNA-directed RNA polymerase subunit K [Halorubrum litoreum JCM
13561]
gi|445818075|gb|EMA67942.1| DNA-directed RNA polymerase subunit K [Halorubrum arcis JCM 13916]
Length = 58
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+++ + +T+P+ +A +E +PFT+RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|408381883|ref|ZP_11179430.1| DNA-directed RNA polymerase subunit K [Methanobacterium formicicum
DSM 3637]
gi|407815331|gb|EKF85916.1| DNA-directed RNA polymerase subunit K [Methanobacterium formicicum
DSM 3637]
Length = 98
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
SK + ++ERAR++G RALQ+SM A M+++ + DP++IA+ EL ++ +P +R
Sbjct: 42 ASKKLNRFERARLIGARALQLSMGAKPMIDVTPDMDPIDIAVIELNKKVLPLDVR 96
>gi|448583264|ref|ZP_21646620.1| DNA-directed RNA polymerase subunit K [Haloferax gibbonsii ATCC
33959]
gi|445729493|gb|ELZ81088.1| DNA-directed RNA polymerase subunit K [Haloferax gibbonsii ATCC
33959]
Length = 57
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+V+ E +T+P+ IA +E +PFT++R
Sbjct: 6 RYEKARILGARALQVSYGAPVLVDSE-QTEPILIAAEEYDAGVLPFTVKR 54
>gi|448298711|ref|ZP_21488738.1| RNA polymerase Rpb6 [Natronorubrum tibetense GA33]
gi|445591013|gb|ELY45224.1| RNA polymerase Rpb6 [Natronorubrum tibetense GA33]
Length = 61
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E + +T+P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETK-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|433638718|ref|YP_007284478.1| DNA-directed RNA polymerase, subunit K/omega [Halovivax ruber
XH-70]
gi|448378231|ref|ZP_21560705.1| DNA-directed RNA polymerase subunit K [Halovivax asiaticus JCM
14624]
gi|433290522|gb|AGB16345.1| DNA-directed RNA polymerase, subunit K/omega [Halovivax ruber
XH-70]
gi|445654213|gb|ELZ07067.1| DNA-directed RNA polymerase subunit K [Halovivax asiaticus JCM
14624]
Length = 61
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E + T+P+ IA +E E +PFT+ R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-RTEPILIAAEEYDEGVLPFTVNR 56
>gi|336252147|ref|YP_004595254.1| DNA-directed RNA polymerase subunit K [Halopiger xanaduensis SH-6]
gi|335336136|gb|AEH35375.1| DNA-directed RNA polymerase subunit K [Halopiger xanaduensis SH-6]
Length = 59
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E + +T P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-QTQPILIAAEEYDAGVLPFTVKR 56
>gi|284165817|ref|YP_003404096.1| RNA polymerase Rpb6 [Haloterrigena turkmenica DSM 5511]
gi|284015472|gb|ADB61423.1| RNA polymerase Rpb6 [Haloterrigena turkmenica DSM 5511]
Length = 61
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV+V+ + +++P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQISYGAPVLVDTD-QSEPILIAAEEYDAGALPFTVKR 56
>gi|448565314|ref|ZP_21636181.1| DNA-directed RNA polymerase subunit K [Haloferax prahovense DSM
18310]
gi|445715058|gb|ELZ66814.1| DNA-directed RNA polymerase subunit K [Haloferax prahovense DSM
18310]
Length = 58
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+V+ E +T+P+ IA +E +PFT++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLVDSE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|292656893|ref|YP_003536790.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|433418970|ref|ZP_20405129.1| DNA-directed RNA polymerase subunit K [Haloferax sp. BAB2207]
gi|448290893|ref|ZP_21482038.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|448546353|ref|ZP_21626517.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-646]
gi|448548340|ref|ZP_21627607.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-645]
gi|448557534|ref|ZP_21632723.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-644]
gi|448568225|ref|ZP_21637802.1| DNA-directed RNA polymerase subunit K [Haloferax lucentense DSM
14919]
gi|448600834|ref|ZP_21656213.1| DNA-directed RNA polymerase subunit K [Haloferax alexandrinus JCM
10717]
gi|448602313|ref|ZP_21656369.1| DNA-directed RNA polymerase subunit K [Haloferax sulfurifontis ATCC
BAA-897]
gi|448622868|ref|ZP_21669517.1| DNA-directed RNA polymerase subunit K [Haloferax denitrificans ATCC
35960]
gi|291371640|gb|ADE03867.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|432199578|gb|ELK55739.1| DNA-directed RNA polymerase subunit K [Haloferax sp. BAB2207]
gi|445577946|gb|ELY32366.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|445702806|gb|ELZ54746.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-646]
gi|445714091|gb|ELZ65858.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-644]
gi|445714435|gb|ELZ66197.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-645]
gi|445727175|gb|ELZ78789.1| DNA-directed RNA polymerase subunit K [Haloferax lucentense DSM
14919]
gi|445734847|gb|ELZ86403.1| DNA-directed RNA polymerase subunit K [Haloferax alexandrinus JCM
10717]
gi|445747828|gb|ELZ99282.1| DNA-directed RNA polymerase subunit K [Haloferax sulfurifontis ATCC
BAA-897]
gi|445753376|gb|EMA04793.1| DNA-directed RNA polymerase subunit K [Haloferax denitrificans ATCC
35960]
Length = 58
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+V+ E +T+P+ IA +E +PFT++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLVDSE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|337283754|ref|YP_004623228.1| DNA-directed RNA polymerase subunit K [Pyrococcus yayanosii CH1]
gi|334899688|gb|AEH23956.1| DNA-directed RNA polymerase subunit K [Pyrococcus yayanosii CH1]
Length = 57
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQISM AP+++++ PLE A+ E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQISMGAPILIDVPEGITPLEAAILEFEKGVIPITVIR 55
>gi|448303021|ref|ZP_21492971.1| DNA-directed RNA polymerase subunit K [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594028|gb|ELY48195.1| DNA-directed RNA polymerase subunit K [Natronorubrum sulfidifaciens
JCM 14089]
Length = 59
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV+VE +++P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQISYGAPVLVE-TNQSEPILIAAEEYDAGVLPFTVKR 56
>gi|119872016|ref|YP_930023.1| DNA-directed RNA polymerase subunit K [Pyrobaculum islandicum DSM
4184]
gi|119673424|gb|ABL87680.1| DNA-directed RNA polymerase, subunit K [Pyrobaculum islandicum DSM
4184]
Length = 109
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+G RALQ++M A +++ G TDP+ IA++E R + F I R PDG
Sbjct: 34 LTKYEIARIIGARALQLAMGAQPKIDIRELGTTDPVLIALEEFRRGLLDFIIVREFPDGK 93
Query: 122 YEDWGVDELI 131
+ EL+
Sbjct: 94 AIKIRLRELL 103
>gi|448739239|ref|ZP_21721254.1| DNA-directed RNA polymerase subunit K [Halococcus thailandensis JCM
13552]
gi|445799834|gb|EMA50203.1| DNA-directed RNA polymerase subunit K [Halococcus thailandensis JCM
13552]
Length = 59
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
S+ +YE+ARI+G RALQI+ APV+VE E T+P+ IA +E +PFT++R
Sbjct: 2 ASQRYNRYEKARIIGARALQIAYGAPVLVETES-TEPILIAAEEYDADVLPFTVKR 56
>gi|325969553|ref|YP_004245745.1| DNA-directed RNA polymerase subunit K [Vulcanisaeta moutnovskia
768-28]
gi|323708756|gb|ADY02243.1| DNA-directed RNA polymerase subunit K [Vulcanisaeta moutnovskia
768-28]
Length = 117
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+ RA Q++M A ++ + G DP++IA++E+R IPF + R LP+G
Sbjct: 38 ITKYELARIVAARAKQLAMGAQPLINPQEIGTYDPVDIALEEIRRGLIPFIVVRTLPNGR 97
Query: 122 YEDWGVDELI 131
+ + +L+
Sbjct: 98 HIRIKLKDLL 107
>gi|14520751|ref|NP_126226.1| DNA-directed RNA polymerase subunit K [Pyrococcus abyssi GE5]
gi|14591752|ref|NP_143483.1| DNA-directed RNA polymerase subunit K [Pyrococcus horikoshii OT3]
gi|48429125|sp|P62014.1|RPOK_PYRAB RecName: Full=DNA-directed RNA polymerase subunit K
gi|48429126|sp|P62015.1|RPOK_PYRHO RecName: Full=DNA-directed RNA polymerase subunit K
gi|5457967|emb|CAB49457.1| rpoK DNA-directed RNA polymerase, subunit K [Pyrococcus abyssi GE5]
gi|380741290|tpe|CCE69924.1| TPA: DNA-directed RNA polymerase subunit K [Pyrococcus abyssi GE5]
Length = 57
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQI+M APV++++ PLE A+ E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>gi|76802064|ref|YP_327072.1| DNA-directed RNA polymerase subunit K [Natronomonas pharaonis DSM
2160]
gi|76557929|emb|CAI49513.1| DNA-directed RNA polymerase subunit K [Natronomonas pharaonis DSM
2160]
Length = 57
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E + +T+P+ +A +E +PFT+ R
Sbjct: 6 RYEKARILGARALQVSYGAPVLIETD-QTEPILVAAEEYDADALPFTVHR 54
>gi|332797018|ref|YP_004458518.1| RNA polymerase Rpb6 [Acidianus hospitalis W1]
gi|332694753|gb|AEE94220.1| RNA polymerase Rpb6 [Acidianus hospitalis W1]
Length = 95
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEG----ETDPLEIAMKELRERKIPFTIRRYL 117
K +T YE ARI+ RALQ++M A ++++ G + + + IA +EL+ +P TIRR
Sbjct: 20 KRLTIYEIARIVSARALQLAMGAVPLIDISGFKPEQLNSISIAEEELKRGVLPITIRRRF 79
Query: 118 PDGSYEDWGVDELI 131
P+G E V E++
Sbjct: 80 PNGKVELISVKEIL 93
>gi|390960755|ref|YP_006424589.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. CL1]
gi|390519063|gb|AFL94795.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. CL1]
Length = 57
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQI+M AP+++++ PL+ AM E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQIAMGAPILIDVPEGVTPLDAAMLEFEKGIIPLTVIR 55
>gi|341582022|ref|YP_004762514.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. 4557]
gi|340809680|gb|AEK72837.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. 4557]
Length = 57
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQI+M AP+++++ PL+ AM E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQIAMGAPILIDVPEGITPLDAAMLEFEKGIIPLTVIR 55
>gi|146304436|ref|YP_001191752.1| DNA-directed RNA polymerase K [Metallosphaera sedula DSM 5348]
gi|145702686|gb|ABP95828.1| DNA-directed RNA polymerase, subunit K [Metallosphaera sedula DSM
5348]
Length = 110
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 64 MTKYERARILGTRALQISMNAPVMVE-----LEGETDPLEIAMKELRERKIPFTIRRYLP 118
+T YERARI+ RALQ++M A +++ LEG + + IA +E R +P ++RR P
Sbjct: 24 LTSYERARIISARALQLAMGASPLIDVSSTGLEGASS-IRIAEEEFRSNLLPISVRRRFP 82
Query: 119 DGSYEDWGVDELI 131
+G E V ++I
Sbjct: 83 NGKVELISVMKII 95
>gi|375083500|ref|ZP_09730520.1| DNA-directed RNA polymerase subunit K [Thermococcus litoralis DSM
5473]
gi|374741827|gb|EHR78245.1| DNA-directed RNA polymerase subunit K [Thermococcus litoralis DSM
5473]
Length = 57
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQI+M APV++++ PLE A+ E + IP T+ R
Sbjct: 5 TRFEKARIIGARALQIAMGAPVLIDVPEGATPLEAAIMEFEKGIIPITVIR 55
>gi|448317553|ref|ZP_21507103.1| DNA-directed RNA polymerase subunit K [Natronococcus jeotgali DSM
18795]
gi|445602944|gb|ELY56914.1| DNA-directed RNA polymerase subunit K [Natronococcus jeotgali DSM
18795]
Length = 60
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV++E + ++P+ IA +E +PFT+RR
Sbjct: 8 RYEKARILGARALQISYGAPVLIETD-RSEPILIAAEEYDADVLPFTVRR 56
>gi|110668829|ref|YP_658640.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi DSM
16790]
gi|385804347|ref|YP_005840747.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi C23]
gi|109626576|emb|CAJ53040.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi DSM
16790]
gi|339729839|emb|CCC41122.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi C23]
Length = 65
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV+V+ E +++P+ +A +E +PFT+++
Sbjct: 14 RYEKARILGARALQISYGAPVLVDTE-QSEPILVAAEEYDAGVLPFTVKQ 62
>gi|357289732|gb|AET73045.1| hypothetical protein PGAG_00156 [Phaeocystis globosa virus 12T]
gi|357292532|gb|AET73868.1| hypothetical protein PGBG_00160 [Phaeocystis globosa virus 14T]
Length = 218
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
+T +TKYE+ RI+G R Q++ A P + E D IA KEL+ +KIPF I+R
Sbjct: 142 HRTVPILTKYEKTRIIGIRLKQLNNGAEPYIKVAEDIIDNNYIAEKELKLKKIPFIIQRP 201
Query: 117 LPDGSYEDWGVDEL 130
+ + ++E W +++L
Sbjct: 202 IANNTFEYWRLEDL 215
>gi|448306196|ref|ZP_21496105.1| DNA-directed RNA polymerase subunit K [Natronorubrum bangense JCM
10635]
gi|445598610|gb|ELY52665.1| DNA-directed RNA polymerase subunit K [Natronorubrum bangense JCM
10635]
Length = 59
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV++E + +++P+ +A +E +PFT++R
Sbjct: 8 RYEKARILGARALQISYGAPVLIETD-QSEPILVAAEEYDAGVLPFTVKR 56
>gi|212223256|ref|YP_002306492.1| DNA-directed RNA polymerase subunit K [Thermococcus onnurineus NA1]
gi|229564220|sp|B6YSQ8.1|RPOK_THEON RecName: Full=DNA-directed RNA polymerase subunit K
gi|212008213|gb|ACJ15595.1| rpoK DNA-directed RNA polymerase, subunit K [Thermococcus
onnurineus NA1]
Length = 57
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++ERARI+G RALQI+M AP+++++ PL+ A+ E + IP T+ R
Sbjct: 3 KY-TRFERARIVGARALQIAMGAPILIDVPEGITPLDAALLEFEKGIIPLTVIR 55
>gi|429217392|ref|YP_007175382.1| DNA-directed RNA polymerase subunit K/omega [Caldisphaera
lagunensis DSM 15908]
gi|429133921|gb|AFZ70933.1| DNA-directed RNA polymerase, subunit K/omega [Caldisphaera
lagunensis DSM 15908]
Length = 95
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 63 YMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
Y+TKYE+A+I+G R+LQ++ NAP +++L+ +DP+ IA E+ +P +I RY G
Sbjct: 21 YLTKYEKAKIIGIRSLQLTKNAPPLIKLDVVKSSDPVSIAKYEVENGILPVSIIRYTQSG 80
>gi|448712008|ref|ZP_21701551.1| DNA-directed RNA polymerase subunit K [Halobiforma nitratireducens
JCM 10879]
gi|445791093|gb|EMA41742.1| DNA-directed RNA polymerase subunit K [Halobiforma nitratireducens
JCM 10879]
Length = 58
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E + + +P+ IA +E +PFT++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLIETD-QAEPILIAAEEYDAGVLPFTVKR 55
>gi|409096140|ref|ZP_11216164.1| DNA-directed RNA polymerase subunit K [Thermococcus zilligii AN1]
Length = 57
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQI+M APV+V++ PL+ A+ E IP T+ R
Sbjct: 5 TRFEKARIIGARALQIAMGAPVLVDVPEGATPLQAAIVEFEMGVIPITVVR 55
>gi|289580112|ref|YP_003478578.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|448281351|ref|ZP_21472657.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|448352734|ref|ZP_21541515.1| RNA polymerase Rpb6 [Natrialba hulunbeirensis JCM 10989]
gi|448358764|ref|ZP_21547440.1| RNA polymerase Rpb6 [Natrialba chahannaoensis JCM 10990]
gi|289529665|gb|ADD04016.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|445578773|gb|ELY33173.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|445642013|gb|ELY95084.1| RNA polymerase Rpb6 [Natrialba hulunbeirensis JCM 10989]
gi|445644778|gb|ELY97787.1| RNA polymerase Rpb6 [Natrialba chahannaoensis JCM 10990]
Length = 58
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+ E + +T+P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLTESD-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|320101226|ref|YP_004176818.1| DNA-directed RNA polymerase subunit omega [Desulfurococcus mucosus
DSM 2162]
gi|319753578|gb|ADV65336.1| DNA-directed RNA polymerase, omega subunit [Desulfurococcus mucosus
DSM 2162]
Length = 106
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRERKIPFTIRR 115
SK MT++E AR++G RALQ+SM AP ++++ DP+ IA+KE+ +P +IRR
Sbjct: 14 SKRMTRFEVARVVGARALQLSMGAPPVIDVSSLPVKDPVYIAIKEVLTGLLPMSIRR 70
>gi|257388637|ref|YP_003178410.1| RNA polymerase Rpb6 [Halomicrobium mukohataei DSM 12286]
gi|257170944|gb|ACV48703.1| RNA polymerase Rpb6 [Halomicrobium mukohataei DSM 12286]
Length = 58
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARI+G RALQ++ APV+++ + +T P+ IA +E +PFT+RR
Sbjct: 7 RYEKARIIGARALQVAFGAPVLIDTD-QTQPILIAAEEYDAGVLPFTVRR 55
>gi|57641433|ref|YP_183911.1| DNA-directed RNA polymerase subunit K [Thermococcus kodakarensis
KOD1]
gi|73917887|sp|Q5JJD0.1|RPOK_PYRKO RecName: Full=DNA-directed RNA polymerase subunit K
gi|57159757|dbj|BAD85687.1| DNA-directed RNA polymerase, subunit K [Thermococcus kodakarensis
KOD1]
Length = 57
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQI+M APV++++ PL+ A+ E + IP T+ R
Sbjct: 5 TRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIR 55
>gi|345004802|ref|YP_004807655.1| DNA-directed RNA polymerase subunit K [halophilic archaeon DL31]
gi|344320428|gb|AEN05282.1| DNA-directed RNA polymerase subunit K [halophilic archaeon DL31]
Length = 58
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARI+G RALQ+S APV+V+ E T+P IA +E +PFT+RR
Sbjct: 5 FNRYEKARIIGARALQLSYGAPVLVDTE-TTEPYLIAAEEYDADVLPFTVRR 55
>gi|448414201|ref|ZP_21577340.1| DNA-directed RNA polymerase, subunit k [Halosarcina pallida JCM
14848]
gi|445682494|gb|ELZ34911.1| DNA-directed RNA polymerase, subunit k [Halosarcina pallida JCM
14848]
Length = 58
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+++ + +++P+ IA +E +PFT+RR
Sbjct: 7 RYEKARILGARALQVSYGAPVLLDTD-QSEPILIAAEEYDAGVLPFTVRR 55
>gi|389860368|ref|YP_006362607.1| DNA-directed RNA polymerase subunit K [Thermogladius cellulolyticus
1633]
gi|388525271|gb|AFK50469.1| DNA-directed RNA polymerase, subunit K [Thermogladius
cellulolyticus 1633]
Length = 104
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGE--TDPLEIAMKELRERKIPFTIRRYLPDGS 121
+T++E AR++G RALQ++ AP + ++ DP+ IA+ EL +P +I+R DGS
Sbjct: 14 LTRFEVARVVGARALQLAYGAPPLFDISSFPIKDPVAIAIAELIRGLLPMSIKRRGIDGS 73
Query: 122 YEDWGVDELIVED 134
E V++LI +D
Sbjct: 74 TELVPVNKLITDD 86
>gi|242398338|ref|YP_002993762.1| DNA-directed RNA polymerase subunit K [Thermococcus sibiricus MM
739]
gi|242264731|gb|ACS89413.1| DNA-directed RNA polymerase subunit K [Thermococcus sibiricus MM
739]
Length = 77
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
K +Y T++E+ARI+G RALQI+M APV++ + PL+ A+ E + IP T+ R
Sbjct: 20 KMFRY-TRFEKARIIGARALQIAMGAPVLINVPEGASPLDAAIVEFEKGIIPITVIR 75
>gi|315229900|ref|YP_004070336.1| DNA-directed RNA polymerase subunit K [Thermococcus barophilus MP]
gi|315182928|gb|ADT83113.1| DNA-directed RNA polymerase subunit K [Thermococcus barophilus MP]
Length = 57
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQI+M APV++++ PL+ A+ E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQIAMGAPVLIDVPEGITPLDAAILEFEKGIIPITVIR 55
>gi|223477708|ref|YP_002582347.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. AM4]
gi|240104018|ref|YP_002960327.1| DNA-directed RNA polymerase subunit K [Thermococcus gammatolerans
EJ3]
gi|259494224|sp|C5A244.1|RPOK_THEGJ RecName: Full=DNA-directed RNA polymerase subunit K
gi|214032934|gb|EEB73762.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. AM4]
gi|239911572|gb|ACS34463.1| DNA-directed RNA polymerase subunit K (rpoK) [Thermococcus
gammatolerans EJ3]
Length = 57
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQI++ APV+V++ + PL+ A+ E + IP T+ R
Sbjct: 5 TRFEKARIIGARALQIALGAPVLVDVPEGSTPLQAAIIEFEKGIIPITVIR 55
>gi|302348224|ref|YP_003815862.1| DNA-directed RNA polymerase subunit K [Acidilobus saccharovorans
345-15]
gi|302328636|gb|ADL18831.1| DNA-directed RNA polymerase subunit K [Acidilobus saccharovorans
345-15]
Length = 95
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 63 YMTKYERARILGTRALQISMNAPVMVELEG---ETDPLEIAMKELRERKIPFTIRRYLPD 119
Y+TKYERA+I+G RALQ+ A +V+++ D +EIA EL +P +I RY P
Sbjct: 21 YLTKYERAKIIGLRALQLDSGALPLVDVDKINVRRDSVEIAAYELDHGLLPISIVRYTPS 80
Query: 120 GSYEDWGVDELI 131
G+ + V L+
Sbjct: 81 GAVQIIPVKLLL 92
>gi|157870432|ref|XP_001683766.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126833|emb|CAJ04437.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 129
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 18/94 (19%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGE------------------TDPLEI 99
R++ Y+TK+E ARI+G RA QI+ A + + G DP+ +
Sbjct: 28 RRSGLYLTKFEVARIIGERAKQIASGAAMSLPGTGSGLDSVETAERCTNPRSLAVDPVMM 87
Query: 100 AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
A +L +RKI +RR PDG+ E V+EL+V+
Sbjct: 88 AKYDLLQRKIRMLVRRVWPDGAVETIPVNELMVD 121
>gi|429192486|ref|YP_007178164.1| DNA-directed RNA polymerase subunit K/omega [Natronobacterium
gregoryi SP2]
gi|448325898|ref|ZP_21515276.1| RNA polymerase Rpb6 [Natronobacterium gregoryi SP2]
gi|429136704|gb|AFZ73715.1| DNA-directed RNA polymerase, subunit K/omega [Natronobacterium
gregoryi SP2]
gi|445613990|gb|ELY67675.1| RNA polymerase Rpb6 [Natronobacterium gregoryi SP2]
Length = 61
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV++E + +P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQISYGAPVLIETD-RAEPILIAAEEYDAGVLPFTVKR 56
>gi|383621945|ref|ZP_09948351.1| RNA polymerase Rpb6 [Halobiforma lacisalsi AJ5]
gi|448702870|ref|ZP_21700227.1| RNA polymerase Rpb6 [Halobiforma lacisalsi AJ5]
gi|445776963|gb|EMA27939.1| RNA polymerase Rpb6 [Halobiforma lacisalsi AJ5]
Length = 61
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV++E + +P+ IA +E +PFT++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-RAEPILIAAEEYDAGVLPFTVKR 56
>gi|298205310|ref|YP_003717788.1| DNA-directed RNA polymerase subunit K [Nanoarchaeum equitans
Kin4-M]
Length = 70
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGET------DPLEIAMKELRERKIPFTIRRYLP 118
+KYE+ARI+G RA+QI+ AP++++++ ET P+EIA E + IP + R +P
Sbjct: 3 SKYEKARIIGIRAMQIAQGAPILIKIDKETLKKINYSPIEIAKMEFEKGAIPIKVIRKIP 62
Query: 119 DGSYEDW 125
+ ++
Sbjct: 63 VKPHINF 69
>gi|448727618|ref|ZP_21709967.1| DNA-directed RNA polymerase subunit K [Halococcus morrhuae DSM
1307]
gi|445789604|gb|EMA40283.1| DNA-directed RNA polymerase subunit K [Halococcus morrhuae DSM
1307]
Length = 61
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
S+ +YE+ARI+G RALQI+ APV+V E T+P+ IA +E +PFT++R
Sbjct: 4 ASQRYNRYEKARIIGARALQIAYGAPVLVGTE-STEPILIAAEEYDADVLPFTVKR 58
>gi|374633680|ref|ZP_09706045.1| DNA-directed RNA polymerase, subunit K/omega [Metallosphaera
yellowstonensis MK1]
gi|373523468|gb|EHP68388.1| DNA-directed RNA polymerase, subunit K/omega [Metallosphaera
yellowstonensis MK1]
Length = 96
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGE----TDPLEIAMKELRERKIPFTIRRYLPD 119
+T YERARI+ RALQ++M A ++++ + + IA +EL+ R +P ++RR P+
Sbjct: 25 LTSYERARIVSARALQLAMGAAPLIDVVSSGLVNSSSIRIAEEELKARLLPISVRRRFPN 84
Query: 120 GSYE 123
G E
Sbjct: 85 GKIE 88
>gi|410721679|ref|ZP_11361009.1| DNA-directed RNA polymerase, subunit K/omega [Methanobacterium sp.
Maddingley MBC34]
gi|410598425|gb|EKQ52998.1| DNA-directed RNA polymerase, subunit K/omega [Methanobacterium sp.
Maddingley MBC34]
Length = 58
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 39/55 (70%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
SK + ++ERAR++G RALQ+SM A MV++ + D ++IA+ EL ++ +P +R
Sbjct: 2 ASKKLNRFERARLIGARALQLSMGAKPMVDVTPDMDTIDIAVIELDKKVLPLDVR 56
>gi|332157859|ref|YP_004423138.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. NA2]
gi|331033322|gb|AEC51134.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. NA2]
Length = 57
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQI+M AP+++++ PL+ A+ E IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQIAMGAPILIDVPEGITPLDAAIMEFERGVIPITVIR 55
>gi|325958570|ref|YP_004290036.1| DNA-directed RNA polymerase subunit K [Methanobacterium sp. AL-21]
gi|325330002|gb|ADZ09064.1| DNA-directed RNA polymerase subunit K [Methanobacterium sp. AL-21]
Length = 63
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRY 116
+K T++E+ARI+G RALQ+SM A V++ DP++IA+ EL + K+P +RR
Sbjct: 2 AAKKFTRFEKARIIGARALQLSMGAEPKVDVNDAKSFDPIDIALLELAKNKMPLDVRRL 60
>gi|145591904|ref|YP_001153906.1| DNA-directed RNA polymerase subunit K [Pyrobaculum arsenaticum DSM
13514]
gi|145283672|gb|ABP51254.1| DNA-directed RNA polymerase, subunit K [Pyrobaculum arsenaticum DSM
13514]
Length = 109
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 39 NGEPIETEEKEEQEQKEAARKTSKY---MTKYERARILGTRALQISMNAPVMVELE--GE 93
E +E EK + + A K Y +TKYE AR++G RA+Q++M A +V+ + G
Sbjct: 6 TAELLEKIEKMVELLERALVKRDFYPPRLTKYEIARVVGARAIQLAMGAQPLVDPQEVGS 65
Query: 94 TDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
DP+ IAM+E R + F + R PDG + EL+
Sbjct: 66 MDPVIIAMEEFRRGLLDFIVVREYPDGKSVRIRLKELL 103
>gi|257053580|ref|YP_003131413.1| RNA polymerase Rpb6 [Halorhabdus utahensis DSM 12940]
gi|335433583|ref|ZP_08558403.1| RNA polymerase Rpb6 [Halorhabdus tiamatea SARL4B]
gi|256692343|gb|ACV12680.1| RNA polymerase Rpb6 [Halorhabdus utahensis DSM 12940]
gi|334898589|gb|EGM36693.1| RNA polymerase Rpb6 [Halorhabdus tiamatea SARL4B]
Length = 58
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ++ APV+++ + +T P+ IA +E +PFT+ R
Sbjct: 8 RYEKARILGARALQVAYGAPVLIDTD-QTQPILIAAEEYDAGVLPFTVNR 56
>gi|401423159|ref|XP_003876066.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492307|emb|CBZ27581.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 129
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 22/96 (22%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGET--------------------DPL 97
R++ Y+TK+E AR++G RA QI+ A + L G T DP+
Sbjct: 28 RRSGLYLTKFEVARVIGERAKQIASGAAM--SLPGTTSGLDSVETAERCTNPRSLAVDPV 85
Query: 98 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
+A +L +RKI +RR PDG+ E V+EL+V+
Sbjct: 86 MMAKYDLLQRKIRMLVRRIWPDGAVETIPVNELMVD 121
>gi|409722490|ref|ZP_11269938.1| RNA polymerase Rpb6 [Halococcus hamelinensis 100A6]
gi|448724491|ref|ZP_21706998.1| RNA polymerase Rpb6 [Halococcus hamelinensis 100A6]
gi|445785808|gb|EMA36594.1| RNA polymerase Rpb6 [Halococcus hamelinensis 100A6]
Length = 61
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARI+G RALQI+ APV+V+ E T+P+ IA +E +PFT+ R
Sbjct: 10 RYEKARIIGARALQIAYGAPVLVQTES-TEPILIAAEEYDADVLPFTVWR 58
>gi|154338594|ref|XP_001565519.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062571|emb|CAM39013.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 129
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 22/98 (22%)
Query: 56 AARKTSKYMTKYERARILGTRALQISMNAPVMVELEGET--------------------D 95
A R++ Y+TK+E ARI+G RA QI+ A + L G T D
Sbjct: 26 AERRSGLYLTKFEVARIIGERAKQITSGAAM--SLPGTTTGLDSVEIAERCTNPRSLAVD 83
Query: 96 PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
P+ +A +L +RKI +RR PDG E V+EL+V+
Sbjct: 84 PVMMAKYDLLQRKIRMLVRRTWPDGVVETIPVNELMVD 121
>gi|340058169|emb|CCC52522.1| putative DNA-directed RNA polymerase subunit [Trypanosoma vivax
Y486]
Length = 127
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 20/98 (20%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVE----------LEGE----------TDPL 97
R+++ Y+TKYE ARI+G RA QI V + LE DP+
Sbjct: 24 RRSTPYLTKYELARIVGERARQIVNGTSVFLRDQSCADERSVLEMAERCVDPYSPLVDPI 83
Query: 98 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
IA EL + +IP +RR PDG E+ + EL+V+ S
Sbjct: 84 YIAKIELLQGRIPMIVRRTWPDGLTENIPLCELLVDRS 121
>gi|448322470|ref|ZP_21511940.1| DNA-directed RNA polymerase subunit K [Natronococcus amylolyticus
DSM 10524]
gi|445601228|gb|ELY55217.1| DNA-directed RNA polymerase subunit K [Natronococcus amylolyticus
DSM 10524]
Length = 60
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQIS APV++E + ++P+ IA +E +PFT+ R
Sbjct: 8 RYEKARILGARALQISYGAPVLIETD-RSEPILIAAEEYDADVLPFTVNR 56
>gi|70607127|ref|YP_255997.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
DSM 639]
gi|449067367|ref|YP_007434449.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
N8]
gi|449069637|ref|YP_007436718.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
Ron12/I]
gi|73920768|sp|P39463.2|RPOK_SULAC RecName: Full=DNA-directed RNA polymerase subunit K
gi|68567775|gb|AAY80704.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
DSM 639]
gi|449035875|gb|AGE71301.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
N8]
gi|449038145|gb|AGE73570.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
Ron12/I]
Length = 89
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+ RALQ+SM A +++ D + IA +EL+ +P TIRR P+G
Sbjct: 18 LTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEELKRGVLPITIRRIYPNGQ 77
Query: 122 YEDWGVDEL 130
E V ++
Sbjct: 78 VELISVRKI 86
>gi|313126012|ref|YP_004036282.1| DNA-directed RNA polymerase subunit k [Halogeometricum borinquense
DSM 11551]
gi|448285852|ref|ZP_21477091.1| DNA-directed RNA polymerase, subunit k [Halogeometricum borinquense
DSM 11551]
gi|312292377|gb|ADQ66837.1| DNA-directed RNA polymerase, subunit K [Halogeometricum borinquense
DSM 11551]
gi|445575882|gb|ELY30345.1| DNA-directed RNA polymerase, subunit k [Halogeometricum borinquense
DSM 11551]
Length = 58
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+++ + +++P+ IA +E +PFT++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLLDTD-QSEPILIAAEEYDAGVLPFTVQR 55
>gi|379003393|ref|YP_005259065.1| DNA-directed RNA polymerase subunit K/omega [Pyrobaculum oguniense
TE7]
gi|375158846|gb|AFA38458.1| DNA-directed RNA polymerase, subunit K/omega [Pyrobaculum oguniense
TE7]
Length = 109
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 39 NGEPIETEEKEEQEQKEAARKTSKY---MTKYERARILGTRALQISMNAPVMVELE--GE 93
E +E EK + + A K Y +TKYE AR++G RA+Q++M A +V+ + G
Sbjct: 6 TAELLEKIEKMAELLERALVKRDFYPPRLTKYEIARVVGARAIQLAMGAQPLVDPQEVGS 65
Query: 94 TDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
DP+ IA++E R + F I R PDG + EL+
Sbjct: 66 MDPVIIAIEEFRRGLLDFIIVREYPDGKSVRIRLKELL 103
>gi|146088424|ref|XP_001466047.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398016314|ref|XP_003861345.1| hypothetical protein, conserved [Leishmania donovani]
gi|134070149|emb|CAM68482.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322499571|emb|CBZ34644.1| hypothetical protein, conserved [Leishmania donovani]
Length = 129
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 22/98 (22%)
Query: 56 AARKTSKYMTKYERARILGTRALQISMNAPVMVELEG--------------------ETD 95
A R++ Y+TK+E ARI+G RA QI+ A + L G D
Sbjct: 26 AERRSGLYLTKFEVARIIGERAKQIASGAAM--SLPGTASGLDSVETAERCTNPRSLAVD 83
Query: 96 PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
P+ +A +L +RKI +RR PDG+ E V+EL+V+
Sbjct: 84 PVMMAKYDLLQRKIRMLVRRVWPDGAVETIPVNELMVD 121
>gi|333910743|ref|YP_004484476.1| DNA-directed RNA polymerase subunit K [Methanotorris igneus Kol 5]
gi|333751332|gb|AEF96411.1| DNA-directed RNA polymerase subunit K [Methanotorris igneus Kol 5]
Length = 60
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+TK+E AR+LG RA+QIS AP+ +E + ++ LEIAM+E+++ +P ++R
Sbjct: 3 LTKFEVARMLGARAMQISEGAPITIETD-KSSTLEIAMEEIKKGTVPLRVKR 53
>gi|299472033|emb|CBN80116.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 94
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 19/90 (21%)
Query: 1 MADEDYNDLDMG-----YEDEPPEPEIEE-----GAEEDAENINNDDINGEPIETEEKEE 50
M+D +Y D D G + +E +P+++E D E ++ D G + + +
Sbjct: 1 MSDNEYGDGDGGEEYDVFANEDDDPQVDEPTPLEADPADMEVVDAADAGGAGLRSADD-- 58
Query: 51 QEQKEAARKTSKYMTKYERARILGTRALQI 80
R T+KYMTKYERARILGTRALQI
Sbjct: 59 -------RITTKYMTKYERARILGTRALQI 81
>gi|55377004|ref|YP_134854.1| DNA-directed RNA polymerase subunit K [Haloarcula marismortui ATCC
43049]
gi|344211115|ref|YP_004795435.1| DNA-directed RNA polymerase subunit K [Haloarcula hispanica ATCC
33960]
gi|448630475|ref|ZP_21673130.1| DNA-directed RNA polymerase subunit K [Haloarcula vallismortis ATCC
29715]
gi|448640845|ref|ZP_21677632.1| DNA-directed RNA polymerase subunit K [Haloarcula sinaiiensis ATCC
33800]
gi|448651245|ref|ZP_21680314.1| DNA-directed RNA polymerase subunit K [Haloarcula californiae ATCC
33799]
gi|448667515|ref|ZP_21686015.1| DNA-directed RNA polymerase subunit K [Haloarcula amylolytica JCM
13557]
gi|448678700|ref|ZP_21689707.1| DNA-directed RNA polymerase subunit K [Haloarcula argentinensis DSM
12282]
gi|448689113|ref|ZP_21694850.1| DNA-directed RNA polymerase subunit K [Haloarcula japonica DSM
6131]
gi|141414|sp|P29200.1|RPOK_HALMA RecName: Full=DNA-directed RNA polymerase subunit K
gi|148780|gb|AAA73100.1| OrfMNA [Haloarcula marismortui]
gi|55229729|gb|AAV45148.1| DNA-directed RNA polymerase subunit K [Haloarcula marismortui ATCC
43049]
gi|343782470|gb|AEM56447.1| DNA-directed RNA polymerase subunit K [Haloarcula hispanica ATCC
33960]
gi|445756398|gb|EMA07773.1| DNA-directed RNA polymerase subunit K [Haloarcula vallismortis ATCC
29715]
gi|445761370|gb|EMA12618.1| DNA-directed RNA polymerase subunit K [Haloarcula sinaiiensis ATCC
33800]
gi|445770083|gb|EMA21151.1| DNA-directed RNA polymerase subunit K [Haloarcula amylolytica JCM
13557]
gi|445770772|gb|EMA21830.1| DNA-directed RNA polymerase subunit K [Haloarcula californiae ATCC
33799]
gi|445772687|gb|EMA23732.1| DNA-directed RNA polymerase subunit K [Haloarcula argentinensis DSM
12282]
gi|445778983|gb|EMA29925.1| DNA-directed RNA polymerase subunit K [Haloarcula japonica DSM
6131]
Length = 57
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
++YE+AR LG RALQ++ APV++E E T P+ IA +E +PFT+ R
Sbjct: 6 SRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55
>gi|390938858|ref|YP_006402596.1| DNA-directed RNA polymerase subunit K [Desulfurococcus fermentans
DSM 16532]
gi|390191965|gb|AFL67021.1| DNA-directed RNA polymerase, subunit K [Desulfurococcus fermentans
DSM 16532]
Length = 106
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRERKIPFTIRR 115
SK +T++E AR++G RALQ+SM AP ++++ DP+ IA+ EL +P +IRR
Sbjct: 14 SKRLTRFEIARVVGARALQLSMGAPPIIDVSNLPVKDPVYIAVNELITGLLPMSIRR 70
>gi|410670086|ref|YP_006922457.1| DNA-directed RNA polymerase, subunit K [Methanolobus psychrophilus
R15]
gi|409169214|gb|AFV23089.1| DNA-directed RNA polymerase, subunit K [Methanolobus psychrophilus
R15]
Length = 58
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+++ T+YE+ARI+G R+LQISM APV+++ + T+ L +A +E P T++R
Sbjct: 3 TEHYTRYEKARIIGARSLQISMGAPVLID-DPSTNSLYLAKREFELGATPITVKR 56
>gi|218884345|ref|YP_002428727.1| DNA-directed RNA polymerase subunit K [Desulfurococcus
kamchatkensis 1221n]
gi|218765961|gb|ACL11360.1| DNA-directed RNA polymerase subunit K [Desulfurococcus
kamchatkensis 1221n]
Length = 106
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRERKIPFTIRR 115
SK +T++E AR++G RALQ+SM AP ++++ DP+ IA+ EL +P +IRR
Sbjct: 14 SKRLTRFEIARVVGARALQLSMGAPPIIDVSNLPVKDPVYIAVNELITGLLPMSIRR 70
>gi|156936946|ref|YP_001434742.1| DNA-directed RNA polymerase subunit K [Ignicoccus hospitalis
KIN4/I]
gi|156565930|gb|ABU81335.1| DNA-directed RNA polymerase, subunit K [Ignicoccus hospitalis
KIN4/I]
Length = 97
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 63 YMTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRERKIPFTIRRYLPDG 120
++TK+ERA I+G RALQ+S+ AP ++++ + D L IA +ELR +P T++R G
Sbjct: 13 HLTKFERAVIVGVRALQLSIGAPPLIDISKLPKRDALIIAREELRRGLLPITVKRRTQSG 72
Query: 121 SYEDWGVDELI 131
+D L+
Sbjct: 73 KEVLVPLDCLL 83
>gi|159041045|ref|YP_001540297.1| RNA polymerase Rpb6 [Caldivirga maquilingensis IC-167]
gi|157919880|gb|ABW01307.1| RNA polymerase Rpb6 [Caldivirga maquilingensis IC-167]
Length = 104
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE A+I+ R Q+ AP +V + G +DP+ IA +EL+ +PF I R LP+G
Sbjct: 26 ITKYEFAKIIAVRTRQLMDGAPPLVNPKEIGTSDPVAIAFEELKRGLLPFIIIRRLPNGK 85
Query: 122 YEDWGVDEL 130
++ + EL
Sbjct: 86 RVEYTLKEL 94
>gi|448728481|ref|ZP_21710809.1| RNA polymerase Rpb6 [Halococcus saccharolyticus DSM 5350]
gi|445796963|gb|EMA47448.1| RNA polymerase Rpb6 [Halococcus saccharolyticus DSM 5350]
Length = 58
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARI+G RALQI+ APV+V + T+P+ IA +E +PFT+ R
Sbjct: 7 RYEKARIIGARALQIAYGAPVLVGTD-STEPILIAAEEYDAGVLPFTVNR 55
>gi|414871594|tpg|DAA50151.1| TPA: hypothetical protein ZEAMMB73_917488 [Zea mays]
Length = 73
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 59/77 (76%), Gaps = 7/77 (9%)
Query: 1 MADEDYNDLDMGYEDEPPEPEIEEGAEEDAENIN---NDDINGEPIETEEKEEQEQKEAA 57
MAD+DYN++DMGYEDEPPEPEIEEGAEE+ EN +D I GE E +EQE+ +
Sbjct: 1 MADDDYNEIDMGYEDEPPEPEIEEGAEEELENNEDAPDDVIGGEG----EDKEQEKTKRE 56
Query: 58 RKTSKYMTKYERARILG 74
RKT+KYMTKYERARIL
Sbjct: 57 RKTTKYMTKYERARILA 73
>gi|448733722|ref|ZP_21715964.1| RNA polymerase Rpb6 [Halococcus salifodinae DSM 8989]
gi|445802242|gb|EMA52549.1| RNA polymerase Rpb6 [Halococcus salifodinae DSM 8989]
Length = 58
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARI+G RALQI+ APV+V + T+P+ IA +E +PFT+ R
Sbjct: 7 RYEKARIIGARALQIAYGAPVLVGTD-STEPILIAAEEYDAGVLPFTVNR 55
>gi|352682887|ref|YP_004893411.1| DNA-directed RNA polymerase subunit K [Thermoproteus tenax Kra 1]
gi|350275686|emb|CCC82333.1| DNA-directed RNA polymerase subunit K [Thermoproteus tenax Kra 1]
Length = 112
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 41 EPIETEEKEEQEQKEAARKTSKY---MTKYERARILGTRALQISMNAPVMVELEGE--TD 95
E +E EK Q + + + + Y +T++E AR++ RA+Q+SM A ++++ D
Sbjct: 9 ELVERIEKLVQALRSSLQDRTLYPPRLTRFEVARVIAARAIQLSMGAEPLIDISTLQIKD 68
Query: 96 PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
P+ IA++E ++ K+ F+I R LPDG + L+
Sbjct: 69 PVIIAIEEFKQGKLNFSIVRELPDGKTIKLQLKNLL 104
>gi|229891568|sp|P0C9D9.1|RPB6_ASFK5 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
Length = 147
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 65 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
Query: 118 ---PDGS--YEDWG 126
PDG E W
Sbjct: 124 KVTPDGQKIVEIWN 137
>gi|229891570|sp|P0C9D7.1|RPB6_ASFP4 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
gi|229891571|sp|P0C9D8.1|RPB6_ASFWA RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
Length = 147
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 65 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
Query: 118 ---PDGS--YEDWG 126
PDG E W
Sbjct: 124 KVTPDGQKIVEIWN 137
>gi|15921480|ref|NP_377149.1| DNA-directed RNA polymerase subunit K [Sulfolobus tokodaii str. 7]
gi|20178080|sp|Q972B1.1|RPOK_SULTO RecName: Full=DNA-directed RNA polymerase subunit K
gi|15622266|dbj|BAB66258.1| DNA-directed RNA polymerase subunit K [Sulfolobus tokodaii str. 7]
Length = 86
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+ RALQ++M A +++ D + IA +EL+ +P T+RR P+G
Sbjct: 15 LTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGK 74
Query: 122 YEDWGVDEL 130
E V ++
Sbjct: 75 IELVSVKKV 83
>gi|443898340|dbj|GAC75675.1| histidinol phosphate aminotransferase [Pseudozyma antarctica
T-34]
Length = 85
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 30 AENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQIS 81
A I + G+P + + + R T+ YMTKYERARILGTRALQIS
Sbjct: 38 ANGIVHSSAGGDPSTSMAGQANQD----RITTPYMTKYERARILGTRALQIS 85
>gi|424819346|ref|ZP_18244455.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|326422438|gb|EGD71837.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 60
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDP-LEIAMKELRERKIPFTIRR 115
K+ERAR++G RALQ+SM AP ++++ + D ++IA +EL + +P T+++
Sbjct: 6 KFERARLVGARALQLSMGAPALIKVNKKEDTYIDIAKRELEKDILPITVKK 56
>gi|222636992|gb|EEE67124.1| hypothetical protein OsJ_24151 [Oryza sativa Japonica Group]
Length = 218
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
Query: 67 YERARILGT---RALQISMNAPVMVELEGETDPLEIAMK 102
Y++ R+ ALQISMNA VMVEL+GETDPLEI +K
Sbjct: 175 YDKIRVCTHPWYTALQISMNALVMVELDGETDPLEIKIK 213
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 21/23 (91%)
Query: 77 ALQISMNAPVMVELEGETDPLEI 99
ALQISMNA VMVEL+GETDPLE
Sbjct: 123 ALQISMNALVMVELDGETDPLEC 145
>gi|45358890|ref|NP_988447.1| RNA polymerase Rpb6 [Methanococcus maripaludis S2]
gi|340624638|ref|YP_004743091.1| DNA-directed RNA polymerase subunit K [Methanococcus maripaludis
X1]
gi|45047756|emb|CAF30883.1| DNA-directed RNA polymerase, subunit K [Methanococcus maripaludis
S2]
gi|339904906|gb|AEK20348.1| DNA-directed RNA polymerase subunit K [Methanococcus maripaludis
X1]
Length = 57
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+TK+E AR++G R+LQIS AP+ +E E +T L++A E+++ K+P +++
Sbjct: 3 LTKFETARLIGARSLQISDGAPLAIESE-KTSSLDLADDEVKQGKLPLCVKK 53
>gi|340505845|gb|EGR32130.1| zinc ran-binding domain protein 3 [Ichthyophthirius multifiliis]
Length = 464
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 47 EKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEG-ETDPLEIAMKELR 105
E+ +++ + + T ++TKYE+AR++GTRALQI+ ++P+ V+ E E DP+ IA KE
Sbjct: 114 EQYDKKLENKEKITPPFLTKYEKARVIGTRALQIAQSSPIYVDTEDKEYDPIVIAEKEFA 173
Query: 106 ERK 108
+K
Sbjct: 174 LKK 176
>gi|170290923|ref|YP_001737739.1| DNA-directed RNA polymerase subunit K [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175003|gb|ACB08056.1| DNA-directed RNA polymerase, subunit K [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 84
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVE----LEGETDPLEIAMKELRERKIPFTIRR 115
K +TK+E+ RI+ RA QI+ +P+ +E EG TDP+E+A EL + K+P I R
Sbjct: 9 KRLTKFEKVRIISVRAQQIATGSPLFLEENEIPEGLTDPIELAKLELEKGKLPILIGR 66
>gi|585916|sp|Q08399.1|RPO6_ASFM2 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
gi|304101|gb|AAA42731.1| RNA polymerase subunit 6 [African swine fever virus]
Length = 139
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 69 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 127
Query: 118 ---PDG 120
P+G
Sbjct: 128 KVTPEG 133
>gi|303398754|emb|CBW46735.1| C147L [African swine fever virus Georgia 2007/1]
Length = 147
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 65 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
Query: 118 ---PDGS--YEDWG 126
P+G E W
Sbjct: 124 KVTPEGQKIVEIWN 137
>gi|229891569|sp|P0C9D6.1|RPB6_ASFM2 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
Length = 151
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 69 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 127
Query: 118 ---PDGS--YEDWG 126
P+G E W
Sbjct: 128 KVTPEGQKIVEIWN 141
>gi|255513354|gb|EET89620.1| RNA polymerase Rpb6 [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 57
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRERKIPFTIRR 115
TK+E+AR++G RALQ++ AP ++++ E +DPL++A E + IP TI R
Sbjct: 5 TKFEKARVIGARALQLAHGAPPLIKVPKEISDPLDLAEIEFEKDIIPITIIR 56
>gi|312137114|ref|YP_004004451.1| DNA-directed RNA polymerase, subunit k [Methanothermus fervidus DSM
2088]
gi|311224833|gb|ADP77689.1| DNA-directed RNA polymerase, subunit K [Methanothermus fervidus DSM
2088]
Length = 58
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
SK +T++E+ R+LG+RALQ++M A +V+ + + +P++IA+ EL++ IP + R
Sbjct: 2 SKKLTRFEKDRLLGSRALQLAMGAKPLVKTD-KINPVDIAILELKKDVIPLKVVR 55
>gi|150401516|ref|YP_001325282.1| RNA polymerase Rpb6 [Methanococcus aeolicus Nankai-3]
gi|150014219|gb|ABR56670.1| RNA polymerase Rpb6 [Methanococcus aeolicus Nankai-3]
Length = 61
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
TK+E+AR+LG+RALQIS A VE E ++ + IAM E ++ K+P +++ L
Sbjct: 4 TKFEKARLLGSRALQISDGAFATVESEEKSSGV-IAMNEFKQGKLPLKVKKPL 55
>gi|150399389|ref|YP_001323156.1| RNA polymerase Rpb6 [Methanococcus vannielii SB]
gi|150012092|gb|ABR54544.1| RNA polymerase Rpb6 [Methanococcus vannielii SB]
Length = 56
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
+TK+E AR++G R+LQIS AP+ VE ++ L +A +E+++ KIP +++ L
Sbjct: 3 LTKFETARLVGARSLQISDGAPLTVE-SDKSSSLNLAEEEVKQGKIPLCVKKPL 55
>gi|159905729|ref|YP_001549391.1| RNA polymerase Rpb6 [Methanococcus maripaludis C6]
gi|159887222|gb|ABX02159.1| RNA polymerase Rpb6 [Methanococcus maripaludis C6]
Length = 59
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+TK+E AR++G R+LQIS AP+ +E T L +A E+R+ K+P +++
Sbjct: 3 LTKFETARLVGARSLQISDGAPLAIE-SDRTSSLNLAEDEVRQGKLPLCVKK 53
>gi|134045311|ref|YP_001096797.1| RNA polymerase Rpb6 [Methanococcus maripaludis C5]
gi|132662936|gb|ABO34582.1| RNA polymerase Rpb6 [Methanococcus maripaludis C5]
Length = 58
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+TK+E AR++G R+LQIS AP+ +E +T L +A E+++ K+P +++
Sbjct: 3 LTKFETARLVGARSLQISDGAPLTIE-SDKTSSLNLAEDEVKQGKLPLCVKK 53
>gi|374635690|ref|ZP_09707284.1| RNA polymerase Rpb6 [Methanotorris formicicus Mc-S-70]
gi|373561543|gb|EHP87776.1| RNA polymerase Rpb6 [Methanotorris formicicus Mc-S-70]
Length = 60
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
+TK+E AR+LG RA+QIS A + +E + ++ L+IAM+E+++ +P ++R P +E
Sbjct: 3 LTKFEVARVLGARAMQISEGALITIETD-KSSTLDIAMEEIKKGMVPLRVKR--PKIGFE 59
Query: 124 D 124
+
Sbjct: 60 E 60
>gi|479917|pir||S35644 DNA-directed RNA polymerase chain 6 homolog - African swine fever
virus
Length = 69
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M L+ + P++IA +EL RKIP + R +
Sbjct: 1 RITSNVLTTFEATRLVAVRAQQLAINGSTM--LKKKYSPIDIAKQELFNRKIPLLVMRCI 58
Query: 118 ---PDG 120
P+G
Sbjct: 59 KVTPEG 64
>gi|288560170|ref|YP_003423656.1| DNA-directed RNA polymerase subunit K RpoK [Methanobrevibacter
ruminantium M1]
gi|288542880|gb|ADC46764.1| DNA-directed RNA polymerase subunit K RpoK [Methanobrevibacter
ruminantium M1]
Length = 72
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 56 AARKTSKYMTKYERARILGTRALQISMNAPVM--------VELEGETDPLEIAMKELRER 107
A + T+K +T++E+AR+LG RA+Q+SM A M ++ DP++IA EL
Sbjct: 3 AKKSTAKKLTRFEKARVLGARAIQLSMGAKPMEHKEIEKFIKNSKSLDPIDIATLELELG 62
Query: 108 KIPFTIR 114
+P +R
Sbjct: 63 ILPLDVR 69
>gi|71656596|ref|XP_816843.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70881997|gb|EAN94992.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 130
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVE--------------------LEGETDPL 97
R++S Y+TKYE R+LG RA Q + V + DP+
Sbjct: 27 RRSSAYLTKYEMVRVLGERARQTVNGSSVFLSSRSRVNERSALELAERCSDPYSSSVDPI 86
Query: 98 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
IA +L + +I ++R P+G E+ V EL+++ +
Sbjct: 87 FIAKMDLLQGRISMIVQRTWPNGKIENIPVSELLIDKT 124
>gi|150402497|ref|YP_001329791.1| RNA polymerase Rpb6 [Methanococcus maripaludis C7]
gi|150033527|gb|ABR65640.1| RNA polymerase Rpb6 [Methanococcus maripaludis C7]
Length = 58
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+TK+E AR++G R+LQIS AP+ +E T L +A E+++ K+P +++
Sbjct: 3 LTKFETARLVGARSLQISDGAPLTIE-SDRTSSLNLAEDEIKQGKLPLCVKK 53
>gi|68060664|ref|XP_672319.1| DNA-directed RNA polymerase subunit I [Plasmodium berghei strain
ANKA]
gi|56489282|emb|CAI03259.1| DNA-directed RNA polymerase subunit I, putative [Plasmodium
berghei]
Length = 91
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 49 EEQEQKEAARKTSKYMTKYERARILGTRALQISMNA 84
E E E + S Y+TKYE+ARI+GTRA Q S+NA
Sbjct: 56 ENCEGNEXIKNNSPYLTKYEKARIIGTRAXQXSLNA 91
>gi|162849452|emb|CAN10417.1| RNA polymerase subunit 6 [African swine fever virus OURT 88/3]
Length = 147
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 65 RITSNVLTTSEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
Query: 118 ---PDGS--YEDWG 126
P+G E W
Sbjct: 124 KVTPEGQKIVEIWN 137
>gi|218199556|gb|EEC81983.1| hypothetical protein OsI_25903 [Oryza sativa Indica Group]
Length = 147
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Query: 67 YERARILGT---RALQISMNAPVMVELEGETDPLEIAMK 102
Y++ R+ ALQISMNA VMVEL+GET PLEI +K
Sbjct: 104 YDKIRVCTHPWYTALQISMNALVMVELDGETYPLEIKIK 142
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 77 ALQISMNAPVMVELEGETDPLE 98
ALQISMNA VMVEL+GETDPLE
Sbjct: 68 ALQISMNALVMVELDGETDPLE 89
>gi|289191575|ref|YP_003457516.1| RNA polymerase Rpb6 [Methanocaldococcus sp. FS406-22]
gi|288938025|gb|ADC68780.1| RNA polymerase Rpb6 [Methanocaldococcus sp. FS406-22]
Length = 57
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
+TK+E ARILG R+LQIS A + +E E ++ L+IA +E+++ K+P
Sbjct: 3 LTKFEIARILGARSLQISNGAYITIETECDSS-LKIAYEEIKQGKVPL 49
>gi|336121974|ref|YP_004576749.1| RNA polymerase Rpb6 [Methanothermococcus okinawensis IH1]
gi|334856495|gb|AEH06971.1| RNA polymerase Rpb6 [Methanothermococcus okinawensis IH1]
Length = 56
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
TK+E+ARI+G R+LQIS A + ++ E + L+IAM+E + KIP ++
Sbjct: 3 CTKFEKARIIGARSLQISDGAFLTIDTE-KYSSLDIAMEEFEKGKIPLKVK 52
>gi|424819698|ref|ZP_18244765.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422494|gb|EGD71891.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 59
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDP-LEIAMKELRERKIPFTIRR 115
K+E+AR++G RALQ+S AP ++++ + D ++IA +EL + +P T++R
Sbjct: 6 KFEKARLVGARALQLSSGAPPLIKINKKEDTYIDIAKRELEKGILPITVKR 56
>gi|374724099|gb|EHR76179.1| DNA-directed RNA polymerase subunit K [uncultured marine group II
euryarchaeote]
Length = 84
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 22/77 (28%)
Query: 59 KTSKYMTKYERARILGTRALQISMNAPV--------------MVELEG--------ETDP 96
K ++ T++ERARI+G RALQI M AP+ +V L G DP
Sbjct: 3 KPARLHTRFERARIIGARALQIGMGAPLYANEEVLREAFREELVSLYGLEEASVRFVLDP 62
Query: 97 LEIAMKELRERKIPFTI 113
L+IA+ E IP I
Sbjct: 63 LKIALYEYEHELIPIDI 79
>gi|48477615|ref|YP_023321.1| DNA-directed RNA polymerase subunit K [Picrophilus torridus DSM
9790]
gi|73917884|sp|Q6L1M4.1|RPOK_PICTO RecName: Full=DNA-directed RNA polymerase subunit K
gi|48430263|gb|AAT43128.1| DNA-directed RNA polymerase subunit K [Picrophilus torridus DSM
9790]
Length = 60
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 64 MTKYERARILGTRALQISMNAPV-MVELEGETDPLEIAMKELRERKIPFTIRR 115
+TK+E+ARI+G RALQI+M APV + DP++IAM E IP TI+R
Sbjct: 6 LTKFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58
>gi|291333602|gb|ADD93294.1| DNA directed RNA polymerase subunit K [uncultured archaeon
MedDCM-OCT-S09-C50]
Length = 84
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 22/77 (28%)
Query: 59 KTSKYMTKYERARILGTRALQISMNAPV--------------MVELEG--------ETDP 96
K ++ T++ERARI+G RALQI M AP+ +V L G DP
Sbjct: 3 KPARQHTRFERARIIGARALQIGMGAPLYATEEVLRDQFKEELVSLYGLEEANIRFVLDP 62
Query: 97 LEIAMKELRERKIPFTI 113
L+IA+ E IP I
Sbjct: 63 LKIALYEYENHLIPIDI 79
>gi|15668369|ref|NP_247165.1| DNA-directed RNA polymerase subunit K [Methanocaldococcus
jannaschii DSM 2661]
gi|2500632|sp|Q57650.1|RPOK_METJA RecName: Full=DNA-directed RNA polymerase subunit K
gi|1498971|gb|AAB98177.1| DNA-directed RNA polymerase, subunit K (rpoK) [Methanocaldococcus
jannaschii DSM 2661]
Length = 57
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
+TK+E ARILG R+LQIS A +E + ++ L+IA +E+++ K+P
Sbjct: 3 LTKFEIARILGARSLQISSGAYATIETKCDSS-LKIAYEEIKQGKVPL 49
>gi|22093728|dbj|BAC07021.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 137
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
Query: 67 YERARILGT---RALQISMNAPVMVELEGETDPLEIAMK 102
Y++ R+ ALQI MNA VMVEL+GETDPLEI +K
Sbjct: 95 YDKIRVCTHPWYTALQI-MNALVMVELDGETDPLEIKIK 132
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 20/22 (90%), Gaps = 1/22 (4%)
Query: 77 ALQISMNAPVMVELEGETDPLE 98
ALQI MNA VMVEL+GETDPLE
Sbjct: 60 ALQI-MNALVMVELDGETDPLE 80
>gi|297618750|ref|YP_003706855.1| RNA polymerase Rpb6 [Methanococcus voltae A3]
gi|297377727|gb|ADI35882.1| RNA polymerase Rpb6 [Methanococcus voltae A3]
Length = 70
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
TK+E+AR++G+RALQIS AP V+ + + L++A++E+ + +P TI++
Sbjct: 13 TKFEKARLIGSRALQISGGAPTTVDSD-SSSSLDLAIEEVSKGAVPLTIKK 62
>gi|296109375|ref|YP_003616324.1| RNA polymerase Rpb6 [methanocaldococcus infernus ME]
gi|295434189|gb|ADG13360.1| RNA polymerase Rpb6 [Methanocaldococcus infernus ME]
Length = 55
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
+TK+E ARI+G R+LQI+ A +++E E L+IA +E + KIP
Sbjct: 3 LTKFEVARIIGARSLQIADGAYSTIDIE-ELSSLKIAFEEFKRGKIPL 49
>gi|452210337|ref|YP_007490451.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Tuc01]
gi|452100239|gb|AGF97179.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Tuc01]
Length = 37
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 82 MNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
M APV+VE +G DPL +A++EL+ IP T++R
Sbjct: 1 MGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 34
>gi|256810438|ref|YP_003127807.1| RNA polymerase Rpb6 [Methanocaldococcus fervens AG86]
gi|256793638|gb|ACV24307.1| RNA polymerase Rpb6 [Methanocaldococcus fervens AG86]
Length = 61
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
+TK+E ARILG R+LQIS A +E + ++ L+IA +E+ + K+P
Sbjct: 7 LTKFEIARILGARSLQISNGAYATIETKQDSS-LKIAYEEIEQGKVPL 53
>gi|261403740|ref|YP_003247964.1| RNA polymerase Rpb6 [Methanocaldococcus vulcanius M7]
gi|261370733|gb|ACX73482.1| RNA polymerase Rpb6 [Methanocaldococcus vulcanius M7]
Length = 56
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
+TK+E ARILG R+LQIS A ++ ++ L+IA +E+++ K+P
Sbjct: 3 LTKFEIARILGARSLQISDGAYATIKTTCDSS-LKIAYEEIKQEKVPL 49
>gi|373458199|ref|ZP_09549966.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldithrix abyssi DSM
13497]
gi|371719863|gb|EHO41634.1| NADH-ubiquinone oxidoreductase chain 49kDa [Caldithrix abyssi DSM
13497]
Length = 406
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 33 INNDDINGEPIETEEKEEQEQKEAARKTSKYMTKY---ERARILGTRALQISMNAPVMVE 89
IN N PI E EQK+ K+ KY+ + + + G AL++++ V+VE
Sbjct: 12 INKQAANKTPISPWEPFWAEQKQFDLKSGKYLKIWHGPQHPGVTGNMALELTLQGDVVVE 71
Query: 90 LEGETDPLEIAMKELRERK-----IPFTIRRYLPDGSYEDW 125
+ L ++L ER+ P R +P+ Y ++
Sbjct: 72 CKTHVGYLHRGFEKLMERRKFIQCFPIVCRICVPEPDYNEY 112
>gi|521086|emb|CAA56729.1| RNA polymerase subunit K [Sulfolobus acidocaldarius]
Length = 83
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
+TKYE ARI+ RALQ + ++D + + ++ +P TIRR P+G E
Sbjct: 18 LTKYEIARIISARALQYLWSLTTDTYFYPKSDAVISIARGIKRGVLPITIRRIYPNGQVE 77
>gi|73852932|ref|YP_294216.1| hypothetical protein EhV458 [Emiliania huxleyi virus 86]
gi|72415648|emb|CAI65885.1| hypothetical protein EhV458 [Emiliania huxleyi virus 86]
gi|283481672|emb|CAZ69788.1| putative RNA polymerase Rpb6 [Emiliania huxleyi virus 99B1]
gi|347482013|gb|AEO97999.1| hypothetical protein ENVG_00103 [Emiliania huxleyi virus 84]
gi|347482373|gb|AEO98314.1| hypothetical protein ELVG_00013 [Emiliania huxleyi virus 203]
gi|347600598|gb|AEP15085.1| hypothetical protein EOVG_00148 [Emiliania huxleyi virus 88]
gi|347600936|gb|AEP15422.1| hypothetical protein EQVG_00012 [Emiliania huxleyi virus 207]
gi|347601572|gb|AEP16057.1| hypothetical protein ERVG_00181 [Emiliania huxleyi virus 208]
gi|357973001|gb|AET98274.1| hypothetical protein EPVG_00387 [Emiliania huxleyi virus 201]
Length = 81
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 118
+TS Y+T++E AR+ G LQ+ N +++ + A+ + ++ IRR LP
Sbjct: 5 QTSSYLTRFELARLAGIVELQLQDNKTSVIDSSKTLH--DQAVDIVLNKETDIVIRRILP 62
Query: 119 DGSYEDWGVDEL 130
SYED + L
Sbjct: 63 GDSYEDVSLKTL 74
>gi|281208925|gb|EFA83100.1| hypothetical protein PPL_03890 [Polysphondylium pallidum PN500]
Length = 1159
Score = 35.4 bits (80), Expect = 8.1, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 14 EDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARIL 73
E+E + +E E+ ++ N+ IN E E ++Q +E +YMT L
Sbjct: 1076 EEELLKKTLESAQSEEEKDYFNNKINQLTAELENIKKQSNQELLTLKQEYMT-------L 1128
Query: 74 GTRALQISMNAPVMVELEGETDPLEIAMKELRER 107
++ +Q M M E+E E D L+ MK+L+++
Sbjct: 1129 ESKFIQTKMT---MAEMENENDSLKYEMKKLQKK 1159
>gi|9628177|ref|NP_042763.1| RNA polymerase subunit 6 [African swine fever virus]
gi|1173135|sp|P42484.1|RPO6_ASFB7 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
gi|780439|gb|AAA65299.1| RNA polymerase subunit 6 [African swine fever virus]
gi|162849279|emb|CAN10169.1| RNA polymerase subunit 6 [African swine fever virus Benin 97/1]
gi|1097459|prf||2113434BW RNA polymerase:SUBUNIT=6
Length = 147
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 37/137 (27%)
Query: 26 AEEDAENINNDDINGEP---------------------IETEEKEEQEQKEAA------- 57
A+ D E+I DD+ E +E+ E + ++
Sbjct: 2 ADNDNEDIIMDDLVEEYVETEEENFVDSEEESEDKDEIVESPSICEGFVQASSQTLVIIP 61
Query: 58 ---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP +
Sbjct: 62 DNERITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVM 120
Query: 115 RYL---PDGS--YEDWG 126
R + P+G E W
Sbjct: 121 RCIKVTPEGQKIVEIWN 137
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.307 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,506,212,044
Number of Sequences: 23463169
Number of extensions: 106187265
Number of successful extensions: 736942
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1734
Number of HSP's successfully gapped in prelim test: 1335
Number of HSP's that attempted gapping in prelim test: 683776
Number of HSP's gapped (non-prelim): 39265
length of query: 143
length of database: 8,064,228,071
effective HSP length: 107
effective length of query: 36
effective length of database: 9,848,636,284
effective search space: 354550906224
effective search space used: 354550906224
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 71 (32.0 bits)