BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032288
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32PE0|RPAB2_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos
taurus GN=POLR2F PE=2 SV=1
Length = 127
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 85/111 (76%), Gaps = 9/111 (8%)
Query: 24 EGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMN 83
E AEE+ + +N E + + E+ + QK R T+ YMTKYERAR+LGTRALQI+M
Sbjct: 26 ENAEEEGQ------VNVEILPSGERPQANQK---RITTPYMTKYERARVLGTRALQIAMC 76
Query: 84 APVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
APVMVELEGETDPL IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 77 APVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>sp|O88828|RPAB2_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Rattus norvegicus GN=Polr2f PE=1 SV=1
Length = 127
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
>sp|P61219|RPAB2_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus
musculus GN=Polr2f PE=2 SV=1
Length = 127
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
>sp|Q5R592|RPAB2_PONAB DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Pongo
abelii GN=POLR2F PE=2 SV=1
Length = 127
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>sp|P61218|RPAB2_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo
sapiens GN=POLR2F PE=1 SV=1
Length = 127
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>sp|P61217|RPAB2_CRIGR DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Cricetulus griseus GN=POLR2F PE=2 SV=1
Length = 127
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 75/94 (79%)
Query: 41 EPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
E +E E+ Q R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA
Sbjct: 34 ENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93
Query: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
MKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>sp|P20435|RPAB2_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPO26 PE=1 SV=1
Length = 155
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 100/152 (65%), Gaps = 28/152 (18%)
Query: 2 ADEDYNDLDM-GYEDEPP---EPEIEEGAEEDAENINNDDINGEPIET-----EEKEEQE 52
+E++ D D+ + DE +P+ ++G DA NG+ I T E+ ++ E
Sbjct: 11 GNENFEDFDVEHFSDEETYEEKPQFKDGETTDA--------NGKTIVTGGNGPEDFQQHE 62
Query: 53 Q------KEAA-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM 101
Q KE A R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAM
Sbjct: 63 QIRRKTLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAM 122
Query: 102 KELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133
KEL E+KIP IRRYLPDGS+EDW V+ELIV+
Sbjct: 123 KELAEKKIPLVIRRYLPDGSFEDWSVEELIVD 154
>sp|Q24320|RPAB2_DROME DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Drosophila melanogaster GN=RpII18 PE=2 SV=1
Length = 131
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 82/109 (75%), Gaps = 7/109 (6%)
Query: 27 EEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNAPV 86
EE+A+NI E I ++ R T+KYMTKYERAR+LGTRALQI+M AP+
Sbjct: 30 EEEADNI-------EIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPI 82
Query: 87 MVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 135
MVEL+GETDPL+IAMKEL+++KIP IRRYLPD SYEDW +DELI+ D+
Sbjct: 83 MVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVDN 131
>sp|P36595|RPAB2_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb6 PE=1 SV=1
Length = 142
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 75/102 (73%), Gaps = 10/102 (9%)
Query: 40 GEPIET-------EEKEEQEQKEAA---RKTSKYMTKYERARILGTRALQISMNAPVMVE 89
GEP T K Q K A R T+ YMTKYERARILGTRALQISMNAPV+V+
Sbjct: 41 GEPSTTVITEDVASSKTAQSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVD 100
Query: 90 LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 131
LEGETDPL+IAMKEL ++KIP +RRYLPDGSYEDW V ELI
Sbjct: 101 LEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYEDWSVAELI 142
>sp|Q54FA8|RPAB2_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc2
OS=Dictyostelium discoideum GN=polr2f PE=3 SV=1
Length = 133
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 68/75 (90%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
RKT++YMTKYERAR+LG+RALQISMNAP+MVELEGETDPL+IA KELR +KIP IRR+L
Sbjct: 59 RKTTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFL 118
Query: 118 PDGSYEDWGVDELIV 132
P+G YEDW VDEL +
Sbjct: 119 PNGMYEDWSVDELSI 133
>sp|Q17684|RPAB2_CAEEL Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Caenorhabditis elegans GN=rpb-6 PE=3 SV=1
Length = 137
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 66/75 (88%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R+IP +RRYLPD
Sbjct: 62 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPD 121
Query: 120 GSYEDWGVDELIVED 134
GSYEDW D+L + D
Sbjct: 122 GSYEDWPTDQLQLAD 136
>sp|A8WSV7|RPAB2_CAEBR Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Caenorhabditis briggsae GN=rpb-6 PE=3 SV=1
Length = 138
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 66/75 (88%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R++P IRRYLPD
Sbjct: 63 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPIIIRRYLPD 122
Query: 120 GSYEDWGVDELIVED 134
GSYEDW ++L + D
Sbjct: 123 GSYEDWPTEQLQLAD 137
>sp|Q8PW42|RPOK_METMA DNA-directed RNA polymerase subunit K OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=rpoK PE=3 SV=1
Length = 83
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 41/51 (80%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++ERARI+G RALQI+M APV+VE +G DPL +A++EL+ IP T++R
Sbjct: 30 TRFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80
>sp|Q9YDJ9|RPOK_AERPE DNA-directed RNA polymerase subunit K OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpoK PE=3 SV=2
Length = 89
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 63 YMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
Y+TKYERARI+G RA Q+S+ AP +V+ E G +PL+IA E+ +P +I RYLP G
Sbjct: 7 YLTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGG 66
Query: 121 SYEDWGVDELI 131
+ + L+
Sbjct: 67 GGQSLSLSRLV 77
>sp|Q8TT40|RPOK_METAC DNA-directed RNA polymerase subunit K OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpoK
PE=3 SV=1
Length = 60
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++ERARI+G RALQI+M APV+V+ +G DPL +A+ EL+ IP T++R
Sbjct: 5 KY-TRFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57
>sp|Q5UQ32|RPO6_MIMIV DNA-directed RNA polymerase subunit 6 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R209 PE=3 SV=1
Length = 396
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIPFTIRRY 116
R+T +T YE RILGTRA Q + A P++ +EG P ++A EL + F +RR+
Sbjct: 187 RETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTSFIVRRH 245
Query: 117 LPDGSYEDWGVDEL 130
LP YEDW +DEL
Sbjct: 246 LPGKKYEDWRIDEL 259
>sp|A1RWX0|RPOK_THEPD DNA-directed RNA polymerase subunit K OS=Thermofilum pendens
(strain Hrk 5) GN=rpoK PE=3 SV=1
Length = 81
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 63 YMTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRERKIPFTIRRYLPDGS 121
++T++ERARI+G RALQIS+ APV++++ E +DP+ IA KEL +P + R+ P+G
Sbjct: 7 WLTRFERARIIGIRALQISLGAPVLIQVSEELSDPITIAEKELELGLLPIIVVRWTPEGK 66
Query: 122 YED 124
++
Sbjct: 67 IQE 69
>sp|O26148|RPOK_METTH DNA-directed RNA polymerase subunit K OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoK PE=3 SV=1
Length = 61
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 60 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
SK +T++ERAR++G RALQISM A +VE++ DP++IA KEL ++ +P +RR
Sbjct: 4 ASKKLTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59
>sp|Q8ZTF9|RPOK_PYRAE DNA-directed RNA polymerase subunit K OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rpoK PE=3 SV=1
Length = 106
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+G RALQ++M A +V+++ G DP+ IAM+ELR + F I R +PDG
Sbjct: 31 LTKYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDGK 90
Query: 122 YEDWGVDELI 131
+ EL+
Sbjct: 91 TMRIRLKELL 100
>sp|A2SSV2|RPOK_METLZ DNA-directed RNA polymerase subunit K OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpoK
PE=3 SV=1
Length = 62
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T+YERARI+G RALQISM APV+V+ + DPL+IA++E ++P T++R
Sbjct: 4 TRYERARIVGARALQISMGAPVLVK-TVKIDPLDIALEEFDADRVPITVKR 53
>sp|O29134|RPOK_ARCFU DNA-directed RNA polymerase subunit K OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoK PE=3 SV=1
Length = 75
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQI+M APV++E + +T+PLEIA++E IP T+RR
Sbjct: 12 TRFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61
>sp|A0B6E6|RPOK_METTP DNA-directed RNA polymerase subunit K OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rpoK PE=3 SV=1
Length = 60
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
K KY T++ERARI+G RALQI M APV++ + DPLEIA++E+R IP T++R
Sbjct: 2 KGEKY-TRFERARIVGARALQIFMGAPVLIRTD-SIDPLEIALEEMRLGVIPITVKR 56
>sp|Q9HQJ0|RPOK_HALSA DNA-directed RNA polymerase subunit K OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoK PE=3
SV=1
Length = 60
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
S++ ++YE+ARI+G RALQ++ APV+V+ + +T+P+ IA +E +PFT+RR
Sbjct: 4 SQHFSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>sp|B0R4Y7|RPOK_HALS3 DNA-directed RNA polymerase subunit K OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoK PE=3 SV=1
Length = 60
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 61 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
S++ ++YE+ARI+G RALQ++ APV+V+ + +T+P+ IA +E +PFT+RR
Sbjct: 4 SQHFSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>sp|Q9HJ14|RPOK_THEAC DNA-directed RNA polymerase subunit K OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoK PE=3 SV=1
Length = 61
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 115
KY TK+E+ARI+G RALQI+M APV++++ + DP++IAM E IP TI++
Sbjct: 2 KY-TKFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55
>sp|P58232|RPOK_THEVO DNA-directed RNA polymerase subunit K OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rpoK PE=3 SV=1
Length = 61
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 115
KY TK+E+ARI+G RALQI+M APV++++ + DP++IA E IP TI+R
Sbjct: 2 KY-TKFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55
>sp|Q97ZJ9|RPOK_SULSO DNA-directed RNA polymerase subunit K OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoK
PE=1 SV=1
Length = 95
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E R +P TIRR LP+G
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNG 85
>sp|Q8U0E8|RPOK_PYRFU DNA-directed RNA polymerase subunit K OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoK
PE=3 SV=1
Length = 57
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQISM APV++++ PLE A+ E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55
>sp|C3MUV8|RPOK_SULIM DNA-directed RNA polymerase subunit K OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoK PE=3 SV=1
Length = 95
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E + +P TIRR LP+G
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPNG 85
>sp|C4KH38|RPOK_SULIK DNA-directed RNA polymerase subunit K OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoK PE=3 SV=1
Length = 95
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E + +P TIRR LP+G
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPNG 85
>sp|C3N5H2|RPOK_SULIA DNA-directed RNA polymerase subunit K OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoK PE=3 SV=1
Length = 95
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 120
+T+YE AR++ RALQ++M AP ++++ TD + IA +E + +P TIRR LP+G
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPNG 85
>sp|B9LPW5|RPOK_HALLT DNA-directed RNA polymerase subunit K OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=rpoK PE=3 SV=1
Length = 59
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
+YE+ARILG RALQ+S APV+++ + +T+P+ +A +E +PFT+RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>sp|P62015|RPOK_PYRHO DNA-directed RNA polymerase subunit K OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoK PE=3 SV=1
Length = 57
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQI+M APV++++ PLE A+ E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>sp|P62014|RPOK_PYRAB DNA-directed RNA polymerase subunit K OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoK PE=3 SV=1
Length = 57
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++E+ARI+G RALQI+M APV++++ PLE A+ E + IP T+ R
Sbjct: 3 KY-TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>sp|B6YSQ8|RPOK_THEON DNA-directed RNA polymerase subunit K OS=Thermococcus onnurineus
(strain NA1) GN=rpoK PE=3 SV=1
Length = 57
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 62 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
KY T++ERARI+G RALQI+M AP+++++ PL+ A+ E + IP T+ R
Sbjct: 3 KY-TRFERARIVGARALQIAMGAPILIDVPEGITPLDAALLEFEKGIIPLTVIR 55
>sp|Q5JJD0|RPOK_PYRKO DNA-directed RNA polymerase subunit K OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoK PE=3
SV=1
Length = 57
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQI+M APV++++ PL+ A+ E + IP T+ R
Sbjct: 5 TRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIR 55
>sp|C5A244|RPOK_THEGJ DNA-directed RNA polymerase subunit K OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rpoK PE=3 SV=1
Length = 57
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
T++E+ARI+G RALQI++ APV+V++ + PL+ A+ E + IP T+ R
Sbjct: 5 TRFEKARIIGARALQIALGAPVLVDVPEGSTPLQAAIIEFEKGIIPITVIR 55
>sp|P39463|RPOK_SULAC DNA-directed RNA polymerase subunit K OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoK PE=3 SV=2
Length = 89
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+ RALQ+SM A +++ D + IA +EL+ +P TIRR P+G
Sbjct: 18 LTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEELKRGVLPITIRRIYPNGQ 77
Query: 122 YEDWGVDEL 130
E V ++
Sbjct: 78 VELISVRKI 86
>sp|P29200|RPOK_HALMA DNA-directed RNA polymerase subunit K OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rpoK PE=3 SV=1
Length = 57
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115
++YE+AR LG RALQ++ APV++E E T P+ IA +E +PFT+ R
Sbjct: 6 SRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55
>sp|P0C9D9|RPB6_ASFK5 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-081
PE=3 SV=1
Length = 147
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 65 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
Query: 118 ---PDGS--YEDWG 126
PDG E W
Sbjct: 124 KVTPDGQKIVEIWN 137
>sp|P0C9D8|RPB6_ASFWA DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-079 PE=3 SV=1
Length = 147
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 65 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
Query: 118 ---PDGS--YEDWG 126
PDG E W
Sbjct: 124 KVTPDGQKIVEIWN 137
>sp|P0C9D7|RPB6_ASFP4 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-081 PE=3 SV=1
Length = 147
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 65 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
Query: 118 ---PDGS--YEDWG 126
PDG E W
Sbjct: 124 KVTPDGQKIVEIWN 137
>sp|Q972B1|RPOK_SULTO DNA-directed RNA polymerase subunit K OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoK
PE=3 SV=1
Length = 86
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRERKIPFTIRRYLPDGS 121
+TKYE ARI+ RALQ++M A +++ D + IA +EL+ +P T+RR P+G
Sbjct: 15 LTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGK 74
Query: 122 YEDWGVDEL 130
E V ++
Sbjct: 75 IELVSVKKV 83
>sp|Q08399|RPO6_ASFM2 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=PMWK-CL PE=3 SV=1
Length = 139
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 69 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 127
Query: 118 ---PDG 120
P+G
Sbjct: 128 KVTPEG 133
>sp|P0C9D6|RPB6_ASFM2 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-077 PE=3 SV=1
Length = 151
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 58 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 117
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP + R +
Sbjct: 69 RITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 127
Query: 118 ---PDGS--YEDWG 126
P+G E W
Sbjct: 128 KVTPEGQKIVEIWN 141
>sp|Q6L1M4|RPOK_PICTO DNA-directed RNA polymerase subunit K OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=rpoK PE=3 SV=1
Length = 60
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 64 MTKYERARILGTRALQISMNAPV-MVELEGETDPLEIAMKELRERKIPFTIRR 115
+TK+E+ARI+G RALQI+M APV + DP++IAM E IP TI+R
Sbjct: 6 LTKFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58
>sp|Q57650|RPOK_METJA DNA-directed RNA polymerase subunit K OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoK PE=3 SV=1
Length = 57
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 111
+TK+E ARILG R+LQIS A +E + ++ L+IA +E+++ K+P
Sbjct: 3 LTKFEIARILGARSLQISSGAYATIETKCDSS-LKIAYEEIKQGKVPL 49
>sp|P42484|RPB6_ASFB7 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-069 PE=3 SV=1
Length = 147
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 37/137 (27%)
Query: 26 AEEDAENINNDDINGEP---------------------IETEEKEEQEQKEAA------- 57
A+ D E+I DD+ E +E+ E + ++
Sbjct: 2 ADNDNEDIIMDDLVEEYVETEEENFVDSEEESEDKDEIVESPSICEGFVQASSQTLVIIP 61
Query: 58 ---RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114
R TS +T +E R++ RA Q+++N M++ + + P++IA +EL RKIP +
Sbjct: 62 DNERITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVM 120
Query: 115 RYL---PDGS--YEDWG 126
R + P+G E W
Sbjct: 121 RCIKVTPEGQKIVEIWN 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,515,760
Number of Sequences: 539616
Number of extensions: 2628295
Number of successful extensions: 20339
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 468
Number of HSP's that attempted gapping in prelim test: 14883
Number of HSP's gapped (non-prelim): 3959
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)