Query 032288
Match_columns 143
No_of_seqs 139 out of 295
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 12:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3405 RNA polymerase subunit 100.0 1.6E-44 3.4E-49 278.0 8.9 130 4-134 2-136 (136)
2 PLN00152 DNA-directed RNA poly 100.0 3E-43 6.5E-48 270.3 11.1 130 5-134 1-130 (130)
3 PRK01099 rpoK DNA-directed RNA 99.9 2.3E-26 5E-31 157.0 7.5 61 59-119 2-62 (62)
4 COG1758 RpoZ DNA-directed RNA 99.8 4.3E-19 9.3E-24 123.5 5.0 69 55-123 5-74 (74)
5 PF01192 RNA_pol_Rpb6: RNA pol 99.7 2.7E-17 6E-22 108.5 4.6 55 59-113 3-57 (57)
6 PRK00392 rpoZ DNA-directed RNA 99.3 4.3E-12 9.4E-17 86.0 5.8 51 63-114 13-63 (69)
7 TIGR00690 rpoZ DNA-directed RN 99.3 1.2E-11 2.6E-16 83.2 5.5 48 62-110 11-59 (59)
8 PF05320 Pox_RNA_Pol_19: Poxvi 96.0 0.024 5.2E-07 46.0 6.4 64 53-116 69-136 (167)
9 CHL00191 ycf61 DNA-directed RN 49.6 21 0.00046 25.9 3.0 44 65-109 26-69 (76)
10 PF10446 DUF2457: Protein of u 24.1 49 0.0011 30.9 1.8 29 93-121 202-237 (458)
11 PF08813 Phage_tail_3: Phage t 24.0 1.8E+02 0.004 22.8 4.8 32 93-124 98-129 (165)
12 KOG0083 GTPase Rab26/Rab37, sm 22.0 56 0.0012 26.9 1.6 19 71-89 153-171 (192)
13 KOG3130 Uncharacterized conser 20.4 1.5E+02 0.0032 28.0 4.1 31 54-84 318-350 (514)
No 1
>KOG3405 consensus RNA polymerase subunit K [Transcription]
Probab=100.00 E-value=1.6e-44 Score=277.98 Aligned_cols=130 Identities=68% Similarity=1.075 Sum_probs=98.2
Q ss_pred ccccCCC-CCCCCCCCCccccccchhhh---cccCCCCCC-CCCccchhhhHhhhhhhhhcCCccccHHHHHHHHHHHHH
Q 032288 4 EDYNDLD-MGYEDEPPEPEIEEGAEEDA---ENINNDDIN-GEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRAL 78 (143)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~t~~~lTKYElARIiG~RAl 78 (143)
.||++++ .|++++..++..++..+++. .|...++++ .+.+...+.. ...+.++|+|+|||||||+|||+|+||+
T Consensus 2 ~dy~n~~~~g~~~~~~~~~~~~~veed~~~~~ne~~~~e~~e~~~e~~~~g-~~v~~s~R~TtpyMTKYErArvLGtRAl 80 (136)
T KOG3405|consen 2 SDYENDDFLGDDDEPEEPSIEEDVEEDPQDKDNEDEDEEPNEDVVEIEDAG-KAVPKSERKTTPYMTKYERARVLGTRAL 80 (136)
T ss_pred ccccccccCCCccccccccccccccccccccccccccCcchhhhhcccccc-ccccccccccCcchhHHHHHHhhhHHHH
Confidence 3565443 44444444444444444433 222222222 2333333332 4457899999999999999999999999
Q ss_pred HHhhcCCceecCCCCCChHHHHHHHHHcCCCCeEEEeecCCCcEEEeecceeeecc
Q 032288 79 QISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134 (143)
Q Consensus 79 QLs~GApplVd~~~~~dPv~IA~~EL~eGkIpi~IrR~lPdg~yEdw~l~eL~~~~ 134 (143)
|||||||+||++++.|+|+.||++||+++||||+|||||||||||+|+++||++.+
T Consensus 81 QIsm~APvmVeLegETdPL~IAmkEL~qkKIP~iIRRyLPDgSyEDW~vdELiv~d 136 (136)
T KOG3405|consen 81 QISMNAPVMVELEGETDPLEIAMKELKQKKIPFIIRRYLPDGSYEDWSVDELIVED 136 (136)
T ss_pred HHhcCCCeEEecCCCCCHHHHHHHHHhhccCceEEeeeCCCCCccccccceeeccC
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>PLN00152 DNA-directed RNA polymerase; Provisional
Probab=100.00 E-value=3e-43 Score=270.26 Aligned_cols=130 Identities=85% Similarity=1.275 Sum_probs=112.8
Q ss_pred cccCCCCCCCCCCCCccccccchhhhcccCCCCCCCCCccchhhhHhhhhhhhhcCCccccHHHHHHHHHHHHHHHhhcC
Q 032288 5 DYNDLDMGYEDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQISMNA 84 (143)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~t~~~lTKYElARIiG~RAlQLs~GA 84 (143)
||++++.++.+++.+.+++++.+++.+++++.+.+..+.....+...+....+|+|++||||||+|||+|+||+||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~T~p~lTkyErARIiG~RALQIsmgA 80 (130)
T PLN00152 1 DYNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRKTTPYMTKYERARILGTRALQISMNA 80 (130)
T ss_pred CCcccccccccCCCCccccccccccccccCcccccccccchhccccccccccccccccchhHHHHHhhHhHHHHHHhcCC
Confidence 68888888989999999999888877776666544333334344445556888999999999999999999999999999
Q ss_pred CceecCCCCCChHHHHHHHHHcCCCCeEEEeecCCCcEEEeecceeeecc
Q 032288 85 PVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134 (143)
Q Consensus 85 pplVd~~~~~dPv~IA~~EL~eGkIpi~IrR~lPdg~yEdw~l~eL~~~~ 134 (143)
|+||++++.++|+.||++||.+|+|||+|||+||||+||+|+|+||++.+
T Consensus 81 pvlV~~~g~tdPl~IA~~El~~~~iP~iVrR~lPdG~yEd~~v~EL~~~~ 130 (130)
T PLN00152 81 PVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 130 (130)
T ss_pred ceEEccCCCcCHHHHHHHHHHcCCCCeEEEEECCCCCEEeeEeeeEeecC
Confidence 99999988899999999999999999999999999999999999999864
No 3
>PRK01099 rpoK DNA-directed RNA polymerase subunit K; Provisional
Probab=99.93 E-value=2.3e-26 Score=157.04 Aligned_cols=61 Identities=48% Similarity=0.838 Sum_probs=58.4
Q ss_pred cCCccccHHHHHHHHHHHHHHHhhcCCceecCCCCCChHHHHHHHHHcCCCCeEEEeecCC
Q 032288 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119 (143)
Q Consensus 59 ~t~~~lTKYElARIiG~RAlQLs~GApplVd~~~~~dPv~IA~~EL~eGkIpi~IrR~lPd 119 (143)
.++++|||||+||++|+||+||++||||+|+...+.||+.||++||++|+||++|+|++||
T Consensus 2 ~~~~~ltrfe~a~i~akRArQl~~Ga~~lv~~~~~~kPv~iAl~Ei~~gkI~~~v~r~~p~ 62 (62)
T PRK01099 2 MGPMKLTRFERARIIGARALQISMGAPVLIDIPESTDPLDIAEEEFKRGVLPITVKRPLPN 62 (62)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHcCCCceecCCCCCCHHHHHHHHHHcCCCCeEeecCCCC
Confidence 5789999999999999999999999999999855899999999999999999999999997
No 4
>COG1758 RpoZ DNA-directed RNA polymerase, subunit K/omega [Transcription]
Probab=99.77 E-value=4.3e-19 Score=123.46 Aligned_cols=69 Identities=32% Similarity=0.406 Sum_probs=62.0
Q ss_pred hhhhcCCccccHHHHHHHHHHHHHHHhhcCCceecCCCC-CChHHHHHHHHHcCCCCeEEEeecCCCcEE
Q 032288 55 EAARKTSKYMTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRERKIPFTIRRYLPDGSYE 123 (143)
Q Consensus 55 ~~~r~t~~~lTKYElARIiG~RAlQLs~GApplVd~~~~-~dPv~IA~~EL~eGkIpi~IrR~lPdg~yE 123 (143)
..+....++.|||++|+++|+||+||++||+++++.... .||+.||++||.+|+||+.|.|.+++++.+
T Consensus 5 ~~~~l~~~~~~ryelv~~aa~RA~Ql~~ga~~~~~~~~~~~kpv~iAl~Ei~~g~i~~~i~~~~~~~~~~ 74 (74)
T COG1758 5 TIEDLLDKVGNRYELVVVAAKRARQLAAGAPPLVDDEENKDKPVVIALREIAEGKIPIEILRELLIHSLQ 74 (74)
T ss_pred CHHHHHhhccCHHHHHHHHHHHHHHHHcCCCCccccccccCChHHHHHHHHHcCCCCcccchhhhccccC
Confidence 345667789999999999999999999999999987654 899999999999999999999999998753
No 5
>PF01192 RNA_pol_Rpb6: RNA polymerase Rpb6 ; InterPro: IPR006110 In eukaryotes, there are three different forms of DNA-dependent RNA polymerases (2.7.7.6 from EC) transcribing different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. In archaebacteria, there is generally a single form of RNA polymerase which also consists of an oligomeric assemblage of 10 to 13 polypeptides. A component of 14 to 18 kDa shared by all three forms of eukaryotic RNA polymerases and which has been sequenced in budding yeast (gene RPB6 or RPO26), in Schizosaccharomyces pombe (Fission yeast) (gene rpb6 or rpo15), in human and in African swine fever virus (ASFV) is evolutionary related to the archaebacterial subunit K (gene rpoK). The archaebacterial protein is colinear with the C-terminal part of the eukaryotic subunit. The structures of the omega subunit and RBP6, and the structures of the omega/beta' and RPB6/RPB1 interfaces, suggest a molecular mechanism for the function of omega and RPB6 in promoting RNAP assembly and/or stability. The conserved regions of omega and RPB6 form a compact structural domain that interacts simultaneously with conserved regions of the largest RNAP subunit and with the C-terminal tail following a conserved region of the largest RNAP subunit. The second half of the conserved region of omega and RPB6 forms an arc that projects away from the remainder of the structural domain and wraps over and around the C-terminal tail of the largest RNAP subunit, clamping it in a crevice, and threading the C-terminal tail of the largest RNAP subunit through the narrow gap between omega and RPB6 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_R 2Y0S_I 3HKZ_U 2PMZ_K 3M3Y_F 3HOX_F 3GTJ_F 4A3K_F 2VUM_F 3S14_F ....
Probab=99.69 E-value=2.7e-17 Score=108.46 Aligned_cols=55 Identities=36% Similarity=0.491 Sum_probs=50.6
Q ss_pred cCCccccHHHHHHHHHHHHHHHhhcCCceecCCCCCChHHHHHHHHHcCCCCeEE
Q 032288 59 KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 113 (143)
Q Consensus 59 ~t~~~lTKYElARIiG~RAlQLs~GApplVd~~~~~dPv~IA~~EL~eGkIpi~I 113 (143)
...++.|||++++++|+||+||++||+|+++.....+|+.||++||.+|+|+|.|
T Consensus 3 l~~~~~~rY~Lv~~~akRArql~~g~~~~~~~~~~~k~v~iAl~EI~~gki~~~i 57 (57)
T PF01192_consen 3 LLEKVDNRYELVILAAKRARQLSEGAPPLVEEDNEMKPVSIALEEIAEGKIKIEI 57 (57)
T ss_dssp HHHSSSSHHHHHHHHHHHHHHHHTTSTTSSSSSSSSSSSHHHHHHHHTTSSCEEE
T ss_pred hhhccCCHhHHHHHHHHHHHHHHcCcccccccccCCCcHHHHHHHHHcCCCCCcC
Confidence 4567899999999999999999999999998765669999999999999999987
No 6
>PRK00392 rpoZ DNA-directed RNA polymerase subunit omega; Reviewed
Probab=99.31 E-value=4.3e-12 Score=86.00 Aligned_cols=51 Identities=27% Similarity=0.405 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHHHhhcCCceecCCCCCChHHHHHHHHHcCCCCeEEE
Q 032288 63 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 114 (143)
Q Consensus 63 ~lTKYElARIiG~RAlQLs~GApplVd~~~~~dPv~IA~~EL~eGkIpi~Ir 114 (143)
+-+||.++.++++||+||+.|++++++.. ..+|+.||++||.+|+|.|..-
T Consensus 13 v~~ry~Lv~~aakRArql~~~~~~~~~~~-~~K~~~~Al~EI~~gki~~~~~ 63 (69)
T PRK00392 13 VDNRYELVLLAAKRARQLRAGAKPPVDKS-SDKPVVIALREIAEGKVTYEIL 63 (69)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCCc-CCChHHHHHHHHHcCCCceecc
Confidence 44999999999999999999999987654 6899999999999999998763
No 7
>TIGR00690 rpoZ DNA-directed RNA polymerase, omega subunit. The trusted cutoff excludes archaeal homologs but captures some organellar sequences.
Probab=99.25 E-value=1.2e-11 Score=83.17 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=41.0
Q ss_pred ccccHHHHHHHHHHHHHHHhhcC-CceecCCCCCChHHHHHHHHHcCCCC
Q 032288 62 KYMTKYERARILGTRALQISMNA-PVMVELEGETDPLEIAMKELRERKIP 110 (143)
Q Consensus 62 ~~lTKYElARIiG~RAlQLs~GA-pplVd~~~~~dPv~IA~~EL~eGkIp 110 (143)
.+.+||.++.++++||+||+.|+ |++++.. +.+|+.||++||.+|+|.
T Consensus 11 ~v~srY~Lv~~aakRArqL~~~~~~~~~~~~-~~Kp~~iAl~EIa~gkvs 59 (59)
T TIGR00690 11 KIGSRYDLVLVAARRARQLQLKGTDPIVPEE-NDKPTVIALREIAAGLVS 59 (59)
T ss_pred hcCCHhHHHHHHHHHHHHHHhCCCCCccCcc-cCchHHHHHHHHHcCCCC
Confidence 45699999999999999999876 5555553 789999999999999983
No 8
>PF05320 Pox_RNA_Pol_19: Poxvirus DNA-directed RNA polymerase 19 kDa subunit; InterPro: IPR007984 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses the transcription of DNA into RNA. It consists of at least eight subunits, this is the 19 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.00 E-value=0.024 Score=45.99 Aligned_cols=64 Identities=16% Similarity=0.290 Sum_probs=53.2
Q ss_pred hhhhhhcCCccccHHHHHHHHHHHHHHHhhcCCceec-CCC---CCChHHHHHHHHHcCCCCeEEEee
Q 032288 53 QKEAARKTSKYMTKYERARILGTRALQISMNAPVMVE-LEG---ETDPLEIAMKELRERKIPFTIRRY 116 (143)
Q Consensus 53 ~~~~~r~t~~~lTKYElARIiG~RAlQLs~GApplVd-~~~---~~dPv~IA~~EL~eGkIpi~IrR~ 116 (143)
+..-+|+-++.++=||+.=|+|.--.-|..|--|||. +.. ..+-+.|.++||.+|.-|++|...
T Consensus 69 I~~iK~RYTRRiSLfEiTGIiaESyNLLqRGRlPLv~dlsdeT~k~n~L~vvi~EIeEg~CPIVIeKN 136 (167)
T PF05320_consen 69 ISAIKKRYTRRISLFEITGIIAESYNLLQRGRLPLVSDLSDETLKDNILHVVIKEIEEGTCPIVIEKN 136 (167)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHccccccccccchHHHHHhHHHHHHHHHhcCCCcEEEeeC
Confidence 3455677778899999999999999999999999995 322 246789999999999999999763
No 9
>CHL00191 ycf61 DNA-directed RNA polymerase subunit omega; Provisional
Probab=49.59 E-value=21 Score=25.87 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCceecCCCCCChHHHHHHHHHcCCC
Q 032288 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 109 (143)
Q Consensus 65 TKYElARIiG~RAlQLs~GApplVd~~~~~dPv~IA~~EL~eGkI 109 (143)
+||-...=+|.||+|--.-..--++- ...||+.-|+-|+..-.-
T Consensus 26 NRY~iTvqVAnRAKrrRyed~d~~d~-~~~KPv~RAIiEMsDEl~ 69 (76)
T CHL00191 26 NRYKITIQVANRAKRRRYEDIDIIND-PSIKPIIRAILEMVDEIN 69 (76)
T ss_pred cceeehHHHHHHHHHhhhhccccccc-ccccHHHHHHHHHhcccc
Confidence 78999999999999987666444442 278999999999876543
No 10
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=24.05 E-value=49 Score=30.90 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=15.9
Q ss_pred CCChHHHHHHHH-------HcCCCCeEEEeecCCCc
Q 032288 93 ETDPLEIAMKEL-------RERKIPFTIRRYLPDGS 121 (143)
Q Consensus 93 ~~dPv~IA~~EL-------~eGkIpi~IrR~lPdg~ 121 (143)
...||+-|+.-- +.-.||--|---+|-.-
T Consensus 202 EDRPLE~AY~Scle~Rr~~K~~~iPQDIDPSFPtSD 237 (458)
T PF10446_consen 202 EDRPLEAAYISCLEARRREKHIPIPQDIDPSFPTSD 237 (458)
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Confidence 457888886532 22344555655555443
No 11
>PF08813 Phage_tail_3: Phage tail protein; InterPro: IPR014918 This entry is represented by Bacteriophage T1, Orf41. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Proteins of this entry include phage tail proteins. They probably include bacterial Ig-like domains related to IPR003343 from INTERPRO. Which also includes a number of phage tail invasin proteins.
Probab=24.03 E-value=1.8e+02 Score=22.82 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCChHHHHHHHHHcCCCCeEEEeecCCCcEEE
Q 032288 93 ETDPLEIAMKELRERKIPFTIRRYLPDGSYED 124 (143)
Q Consensus 93 ~~dPv~IA~~EL~eGkIpi~IrR~lPdg~yEd 124 (143)
..+|...|++.+...+=+..+|..+|||+.-.
T Consensus 98 p~~~~y~aL~~a~~~~~~~a~r~~~p~G~~~~ 129 (165)
T PF08813_consen 98 PDDPGYKALRAADDSKEVRAFRVTLPNGSTIY 129 (165)
T ss_pred CCCHHHHHHHHHhhcCCeEEEEEEcCCCCEEE
Confidence 35799999999999999999999999998543
No 12
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=22.00 E-value=56 Score=26.90 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhcCCceec
Q 032288 71 RILGTRALQISMNAPVMVE 89 (143)
Q Consensus 71 RIiG~RAlQLs~GApplVd 89 (143)
..|++|-+|++|||||--.
T Consensus 153 ~~ia~~l~k~~~~~~~~~~ 171 (192)
T KOG0083|consen 153 LAIAEELKKLKMGAPPEGE 171 (192)
T ss_pred HHHHHHHHHhccCCCCCCc
Confidence 3578999999999999443
No 13
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.38 E-value=1.5e+02 Score=28.05 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=18.7
Q ss_pred hhhhhcCCccccH--HHHHHHHHHHHHHHhhcC
Q 032288 54 KEAARKTSKYMTK--YERARILGTRALQISMNA 84 (143)
Q Consensus 54 ~~~~r~t~~~lTK--YElARIiG~RAlQLs~GA 84 (143)
+...||-+...|- |-.-...++|.+.=+.|.
T Consensus 318 p~~~~I~T~~~tt~efvee~~~~~r~~~~stG~ 350 (514)
T KOG3130|consen 318 PKRVRINTGKNTTLEFVEEKEEAKRKRKNSTGS 350 (514)
T ss_pred cccceeeccchhHHHHHhhhhHHHHHHhccccc
Confidence 3456666666554 334456677877777654
Done!