BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032289
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVV 90
N PD G + + P+V
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV 104
>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVV 90
N PD G + + P+V
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV 104
>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVV 90
N PD G + + P+V
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV 104
>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVV 90
N PD G + + P+V
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV 104
>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVV 90
N PD G + + P+V
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV 104
>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVV 90
N PD G + + P+V
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV 104
>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVV 90
N PD G + + P+V
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV 104
>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|B Chain B, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|C Chain C, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|D Chain D, Crystal Structure Of Pf-Pcp(1-204)-C
Length = 213
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVV 90
N PD G + + P+V
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV 104
>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|B Chain B, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|C Chain C, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|D Chain D, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
Length = 208
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVV 90
N PD G + + P+V
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV 104
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
pdb|1IU8|B Chain B, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
Length = 206
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 27 LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
LP K + + + I I++G+ G + ++ER AVN PD G QP+
Sbjct: 38 LPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKD 97
Query: 87 IPVVLEDGG 95
P+V +GG
Sbjct: 98 EPIV--EGG 104
>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
Length = 228
Score = 32.3 bits (72), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 51 IHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSI 110
I VG G + +ER A+N PD G QP PV+++ SR + + ++
Sbjct: 88 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSRLPIKTMVNAL 147
Query: 111 TT 112
T
Sbjct: 148 NT 149
>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
Length = 216
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 51 IHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSI 110
I VG G + +ER A+N PD G QP PV+++ SR + + ++
Sbjct: 67 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSRLPIKTXVNAL 126
Query: 111 TT 112
T
Sbjct: 127 NT 128
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
pdb|3GIU|B Chain B, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
Length = 215
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 27 LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQP 84
LPT K +++ I++T +N + + +G G + ER A+N PD +QP
Sbjct: 43 LPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQP 100
>pdb|1KW2|A Chain A, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
pdb|1KW2|B Chain B, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
pdb|1KXP|D Chain D, Crystal Structure Of Human Vitamin D-binding Protein In
Complex With Skeletal Actin
Length = 458
Score = 30.8 bits (68), Expect = 0.28, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 23 GDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGW 82
+GA P T S++S + + +H G +K LER+ LC L
Sbjct: 60 AEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGLERK-------LCMAALKH 112
Query: 83 QPQQIPVVLE 92
QPQ+ P +E
Sbjct: 113 QPQEFPTYVE 122
>pdb|1J78|A Chain A, Crystallographic Analysis Of The Human Vitamin D Binding
Protein
pdb|1J78|B Chain B, Crystallographic Analysis Of The Human Vitamin D Binding
Protein
pdb|1J7E|A Chain A, A Structural Basis For The Unique Binding Features Of The
Human Vitamin D-Binding Protein
pdb|1J7E|B Chain B, A Structural Basis For The Unique Binding Features Of The
Human Vitamin D-Binding Protein
pdb|1LOT|A Chain A, Crystal Structure Of The Complex Of Actin With Vitamin
D-Binding Protein
Length = 458
Score = 30.8 bits (68), Expect = 0.29, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 23 GDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGW 82
+GA P T S++S + + +H G +K LER+ LC L
Sbjct: 60 AEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGLERK-------LCMAALKH 112
Query: 83 QPQQIPVVLE 92
QPQ+ P +E
Sbjct: 113 QPQEFPTYVE 122
>pdb|1MA9|A Chain A, Crystal Structure Of The Complex Of Human Vitamin D
Binding Protein And Rabbit Muscle Actin
Length = 458
Score = 30.8 bits (68), Expect = 0.30, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 23 GDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGW 82
+GA P T S++S + + +H G +K LER+ LC L
Sbjct: 60 AEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGLERK-------LCMAALKH 112
Query: 83 QPQQIPVVLE 92
QPQ+ P +E
Sbjct: 113 QPQEFPTYVE 122
>pdb|1N3B|A Chain A, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|B Chain B, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|C Chain C, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
Length = 216
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 6 GLPAGVTLGSCTVLEAAGDGALPTL-LKTLESSISQTNTNNEQVIWIHVGVNSGSSKFAL 64
L G+ G TV A D + + + + + I H G N ++ L
Sbjct: 6 ALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAADGTL 65
Query: 65 ERRAVNEATFLCPDQLGW 82
+RRA+ E F P++ W
Sbjct: 66 QRRALRERIFANPEEKNW 83
>pdb|2EBJ|A Chain A, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
pdb|2EBJ|B Chain B, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
Length = 192
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 27 LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
LP + L ++ + + + +H+G+ LER AVN F PD G +
Sbjct: 39 LPVDAEALGEALEDLHREGPKAV-LHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLED 97
Query: 87 IPVV 90
+P+V
Sbjct: 98 LPIV 101
>pdb|1T3H|A Chain A, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|B Chain B, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|C Chain C, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
Length = 214
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 6 GLPAGVTLGSCTVLEAAGDGALPTL-LKTLESSISQTNTNNEQVIWIHVGVNSGSSKFAL 64
L G+ G TV A D + + + + + I H G N ++ L
Sbjct: 6 ALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAADGTL 65
Query: 65 ERRAVNEATFLCPDQLGW 82
+RRA+ E F P++ W
Sbjct: 66 QRRALRERIFANPEEKNW 83
>pdb|1VHL|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHT|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VIY|A Chain A, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|B Chain B, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|C Chain C, Crystal Structure Of Dephospho-Coa Kinase
Length = 218
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 6 GLPAGVTLGSCTVLEAAGDGALPTL-LKTLESSISQTNTNNEQVIWIHVGVNSGSSKFAL 64
L G+ G TV A D + + + + + I H G N ++ L
Sbjct: 8 ALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTL 67
Query: 65 ERRAVNEATFLCPDQLGW 82
+RRA+ E F P++ W
Sbjct: 68 QRRALRERIFANPEEKNW 85
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 51 IHVGVNSGSSKFALER---------RAVN--EATFLCPDQLGWQPQQIPVVLED 93
I VGV+ S +L + AVN E LCP G++P I V+LED
Sbjct: 68 IGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILED 121
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 51 IHVGVNSGSSKFALER---------RAVN--EATFLCPDQLGWQPQQIPVVLED 93
I VGV+ S +L + AVN E LCP G++P I V+LED
Sbjct: 68 IGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPNPITVILED 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,625,018
Number of Sequences: 62578
Number of extensions: 123438
Number of successful extensions: 302
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 27
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)