Query 032289
Match_columns 143
No_of_seqs 120 out of 396
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 12:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2039 Pcp Pyrrolidone-carbox 100.0 3.8E-35 8.2E-40 236.3 8.9 112 12-135 34-150 (207)
2 PRK13193 pyrrolidone-carboxyla 100.0 9.1E-32 2E-36 217.4 10.6 114 10-136 33-151 (209)
3 PRK13194 pyrrolidone-carboxyla 100.0 1.9E-31 4.2E-36 215.4 10.6 111 14-136 36-151 (208)
4 PRK13195 pyrrolidone-carboxyla 100.0 2.2E-31 4.7E-36 217.5 10.4 110 15-136 38-155 (222)
5 PRK13196 pyrrolidone-carboxyla 100.0 1.6E-30 3.5E-35 210.1 10.3 111 14-136 37-154 (211)
6 PF01470 Peptidase_C15: Pyrogl 100.0 1.5E-30 3.3E-35 208.0 8.1 116 9-137 32-152 (202)
7 TIGR00504 pyro_pdase pyrogluta 100.0 8E-30 1.7E-34 206.0 10.5 111 14-136 34-149 (212)
8 PRK13197 pyrrolidone-carboxyla 100.0 1.4E-28 2.9E-33 199.1 10.2 111 14-136 37-152 (215)
9 cd00501 Peptidase_C15 Pyroglut 99.9 3E-26 6.4E-31 180.8 10.3 112 14-137 36-152 (194)
10 KOG4755 Predicted pyroglutamyl 97.7 4.1E-06 8.8E-11 68.9 -1.3 77 3-92 47-139 (213)
11 PF06162 DUF976: Caenorhabditi 97.7 0.00013 2.9E-09 58.0 7.0 86 18-116 62-147 (166)
12 KOG4755 Predicted pyroglutamyl 86.2 1.6 3.5E-05 36.2 5.0 52 77-131 107-174 (213)
13 PF04255 DUF433: Protein of un 29.6 50 0.0011 21.1 2.1 22 103-125 17-38 (56)
14 COG1219 ClpX ATP-dependent pro 29.2 25 0.00054 31.7 0.8 56 20-75 186-255 (408)
15 PRK07077 hypothetical protein; 28.0 75 0.0016 26.4 3.4 21 44-64 51-72 (238)
16 COG2442 Uncharacterized conser 27.6 67 0.0015 22.5 2.7 34 89-123 15-48 (79)
17 PRK13366 protocatechuate 4,5-d 26.3 1.2E+02 0.0025 25.9 4.4 80 32-123 35-117 (284)
18 smart00513 SAP Putative DNA-bi 26.3 74 0.0016 18.3 2.3 21 103-123 2-22 (35)
19 PRK14697 bifunctional 5'-methy 25.0 87 0.0019 25.3 3.3 17 44-60 66-82 (233)
20 PF07530 PRE_C2HC: Associated 24.9 64 0.0014 21.8 2.1 19 108-126 2-20 (68)
21 PRK06026 5'-methylthioadenosin 24.7 1E+02 0.0022 25.3 3.6 14 45-58 59-72 (212)
22 PF03851 UvdE: UV-endonuclease 24.0 30 0.00066 29.5 0.4 63 47-123 146-208 (275)
23 COG2608 CopZ Copper chaperone 23.8 79 0.0017 21.0 2.4 22 104-125 50-71 (71)
24 PRK10528 multifunctional acyl- 23.8 61 0.0013 24.8 2.1 51 18-73 48-99 (191)
25 PF07484 Collar: Phage Tail Co 21.6 27 0.00058 22.9 -0.3 13 72-84 45-57 (57)
26 TIGR03664 fut_nucase futalosin 21.6 4.2E+02 0.0091 21.1 8.4 18 44-61 53-70 (222)
27 PF13344 Hydrolase_6: Haloacid 21.4 2E+02 0.0043 20.2 4.2 35 103-137 40-76 (101)
28 TIGR01704 MTA/SAH-Nsdase 5'-me 20.4 1.2E+02 0.0026 24.1 3.2 17 44-60 64-80 (228)
29 PRK06714 S-adenosylhomocystein 20.3 1.2E+02 0.0027 24.7 3.3 18 44-61 66-83 (236)
30 PF02037 SAP: SAP domain; Int 20.0 92 0.002 18.1 1.9 21 103-123 2-22 (35)
No 1
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-35 Score=236.30 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=105.3
Q ss_pred eeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeec
Q 032289 12 TLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVL 91 (143)
Q Consensus 12 ~~~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~ 91 (143)
..+.+-+|+|+|..+.+.|.+.|++ .+|++||++|+|+||+.||+||||||++|||||||+|+||.||||++
T Consensus 34 ~~V~~~~lP~~f~~s~~~l~~~i~~--------~qPd~vl~iG~A~GR~~iT~ERVAINv~DarIpDN~G~qpiDepI~~ 105 (207)
T COG2039 34 AEVKGRILPVVFKKSIDALVQAIAE--------VQPDLVLAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDEPIDP 105 (207)
T ss_pred ceEEEEEcCccHHHHHHHHHHHHHh--------hCCCeEEEecccCCCCcCChhheeeccccccCCCCCCCCcCCCccCC
Confidence 3456789999999999999999986 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHH
Q 032289 92 EDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQL 135 (143)
Q Consensus 92 ~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~ 135 (143)
| ||+||| ||||+|+|+.+|+++|||+.- -++||++-|+-|
T Consensus 106 d---GpaAYf-stlPvkamv~~~~~~GiPA~vS~sAGTyvCNhvmY~~l 150 (207)
T COG2039 106 D---GPAAYF-STLPVKAMVQAIREAGIPASVSNSAGTYVCNHVMYGLL 150 (207)
T ss_pred C---Cchhhh-hcCcHHHHHHHHHHcCCChhhhcccchhhhHHHHHHHH
Confidence 9 899999 999999999999999999976 889999888765
No 2
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.97 E-value=9.1e-32 Score=217.40 Aligned_cols=114 Identities=10% Similarity=0.025 Sum_probs=105.3
Q ss_pred ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCccccee
Q 032289 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV 89 (143)
Q Consensus 10 ~~~~~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI 89 (143)
+..+ ...+|+|+++.+.+.+.+++++ .+|++|||+||++||+.|++||+|+|++||++|||+|++|.+++|
T Consensus 33 ~~~v-~~~~LPv~~~~~~~~l~~~~~~--------~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I 103 (209)
T PRK13193 33 KEEV-KGVILPVEYEKIEDLIVTKIRE--------MKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKI 103 (209)
T ss_pred CceE-EEEEeCCcHHHHHHHHHHHHHH--------HCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcc
Confidence 3444 4589999999999999778875 789999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289 90 VLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM 136 (143)
Q Consensus 90 ~~~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~ 136 (143)
+++ ||++|| |+||+++|+++|+++|+|++- +++|+|++|++|-
T Consensus 104 ~~~---gp~~~~-t~lp~~~l~~~l~~~Gip~~~S~~AG~yvCN~vyY~sl~ 151 (209)
T PRK13193 104 DPL---GQDGIF-TNIPVEDLVDLLNENGIPAELSLSAGSYLCNNAMYIIIR 151 (209)
T ss_pred cCC---Ccceee-cCCCHHHHHHHHHhcCCCceEecCCccchhHHHHHHHHH
Confidence 998 899999 999999999999999999987 8899888888874
No 3
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.97 E-value=1.9e-31 Score=215.40 Aligned_cols=111 Identities=22% Similarity=0.216 Sum_probs=103.5
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (143)
Q Consensus 14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~ 93 (143)
+...+|+|+++++.+.|.+++++ .+|++|||+|+++||+.|+|||+|+|.+||++|||+|++|.++||+++
T Consensus 36 v~~~~LPV~~~~~~~~l~~~l~~--------~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~- 106 (208)
T PRK13194 36 VFGRVLPVSFKRAREELEKVLDE--------IKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVEG- 106 (208)
T ss_pred EEEEEeCCchHhHHHHHHHHHHH--------hCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccCC-
Confidence 55789999999999999888875 789999999999999999999999999999999999999999999998
Q ss_pred CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289 94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM 136 (143)
Q Consensus 94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~ 136 (143)
||++|| ||||+++|+++|++.|+|++- +++|+|++|.+|-
T Consensus 107 --gp~~y~-ttlp~~~l~~~l~~~gip~~~S~dAG~ylCN~iyY~sL~ 151 (208)
T PRK13194 107 --APAAYF-ATLPTREIVEELKKNGIPAVLSYSAGTYLCNYVMYLTLH 151 (208)
T ss_pred --CCCccc-CCCCHHHHHHHHHhcCCCcEEeCCCccchhHHHHHHHHH
Confidence 899999 999999999999999999987 8888888887764
No 4
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.97 E-value=2.2e-31 Score=217.51 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=100.2
Q ss_pred eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCC---CCCCCCCCcccceeec
Q 032289 15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFL---CPDQLGWQPQQIPVVL 91 (143)
Q Consensus 15 ~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfr---iPDn~G~qP~depI~~ 91 (143)
...+|+|+++.+.+.+.+++++ .+|++|||+|||+||+.|++||+|||++|+| +|||+|++|.++||++
T Consensus 38 ~~~~lPv~f~~~~~~l~~~i~~--------~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~~~I~~ 109 (222)
T PRK13195 38 ISRIVPNTFFESIAAAQQAIAE--------IEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVGEPTDP 109 (222)
T ss_pred EEEEeCeEehHHHHHHHHHHHH--------HCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCCCcccC
Confidence 3468999999999999888875 7899999999999999999999999999975 9999999999999999
Q ss_pred CCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289 92 EDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM 136 (143)
Q Consensus 92 ~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~ 136 (143)
+ ||++|| ||||+++|+++|+++|||++- +++|||++|.+|-
T Consensus 110 ~---gp~ay~-stLpv~~iv~~l~~~gipa~vS~~AGtYvCN~v~Y~sL~ 155 (222)
T PRK13195 110 A---GPVAYH-ATVPVRAMVLAMRKAGVPADVSDAAGTFVCNHLMYGVLH 155 (222)
T ss_pred C---Ccceee-cCCCHHHHHHHHHhcCCCceEecCCCcceehHHHHHHHH
Confidence 8 899999 999999999999999999976 7777777776663
No 5
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.97 E-value=1.6e-30 Score=210.14 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=101.3
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCccccee--ec
Q 032289 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV--VL 91 (143)
Q Consensus 14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI--~~ 91 (143)
+...+|+|+++.+.+.|.++++. .+|++|||+|+|+||+.|+|||+|+|++||++|||+|++|.++|| .+
T Consensus 37 v~~~~LPV~~~~~~~~l~~~~~~--------~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~ 108 (211)
T PRK13196 37 VHSALLPVEPRAAMAALSRLLDE--------LQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDTPVCTEP 108 (211)
T ss_pred EEEEEeCCChhHHHHHHHHHHHH--------hCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCCCcccCC
Confidence 56789999999999999888875 789999999999999999999999999999999999999999999 76
Q ss_pred CCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289 92 EDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM 136 (143)
Q Consensus 92 ~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~ 136 (143)
+ ||++|| ||||+++|+++|+++|+|++- +++|+|++|..|-
T Consensus 109 ~---gp~~y~-stLpv~~l~~~l~~~gip~~iS~~AG~YlCN~v~Y~sL~ 154 (211)
T PRK13196 109 D---APAAYL-STLPLRAILAAWHDAGIPGHISNTAGLYVCNFVLYHALH 154 (211)
T ss_pred C---Ccccee-cCCCHHHHHHHHHhcCCCceEccCCCceeehHHHHHHHH
Confidence 6 899999 999999999999999999876 6677666666654
No 6
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=99.96 E-value=1.5e-30 Score=208.00 Aligned_cols=116 Identities=25% Similarity=0.357 Sum_probs=88.3
Q ss_pred CceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccce
Q 032289 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (143)
Q Consensus 9 ~~~~~~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~dep 88 (143)
.+..+ ...+|+|+++.+.+.+.++|++ .+|++|||+|+++||+.|+|||+|+|.+|||+|||+|++|.+++
T Consensus 32 ~~~~v-~~~~lPV~~~~~~~~l~~~l~~--------~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~ 102 (202)
T PF01470_consen 32 GGAEV-HTRELPVSYEKAFEALEELLEE--------HQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEP 102 (202)
T ss_dssp TTEEE-EEEEE-SSHHHHHHHHHHHHHH--------H--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-
T ss_pred CCceE-EEEEecCchHhHHHHHHHHHHh--------cCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCcc
Confidence 34443 5789999999999999888875 78999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289 89 VVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK 137 (143)
Q Consensus 89 I~~~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~ 137 (143)
|+++ ||.+|| |+||+++|+++|+++|+|++- +++|+|++|.+|..
T Consensus 103 i~~~---gp~~~~-t~lp~~~l~~~l~~~gip~~~S~dAG~YlCN~~~Y~sl~~ 152 (202)
T PF01470_consen 103 IVPD---GPEAYF-TTLPVRALVEALREAGIPVEISNDAGRYLCNYIYYRSLHH 152 (202)
T ss_dssp SSTT---S-SEEE--BS-HHHHHHHHHHTT--EEEES---SSHHHHHHHHHHHH
T ss_pred ccCC---Ccccee-cCCCHHHHHHHHHHcCCCCcccCChhhhHHHHHHHHHHHH
Confidence 9998 899999 999999999999999999987 88888888888854
No 7
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=99.96 E-value=8e-30 Score=206.04 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=102.6
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (143)
Q Consensus 14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~ 93 (143)
+...+|+|+++.+.+.|.+.+++ .+|++|||+|+++||+.|+|||+|+|++|+|+|||+|++|.++||+++
T Consensus 34 i~~~~lPV~~~~~~~~l~~~l~~--------~~Pd~vi~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~- 104 (212)
T TIGR00504 34 VVAEILPNTFFEAIEALQQAIDE--------IEPDIVIMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVPD- 104 (212)
T ss_pred EEEEEeCCChHHHHHHHHHHHHH--------HCCCEEEEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccCC-
Confidence 45578999999999999888875 789999999999999999999999999999999999999999999998
Q ss_pred CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289 94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM 136 (143)
Q Consensus 94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~ 136 (143)
||++|| |+||+++|+++|++.|+|++- +++|+|++|.+|.
T Consensus 105 --gp~~~~-ttLpv~~l~~~l~~~gip~~~S~dAG~ylCN~i~Y~sL~ 149 (212)
T TIGR00504 105 --GPAAYF-ATLPVRAMVLAMKKAGIPADVSYTAGTFVCNHLMYGLLH 149 (212)
T ss_pred --CCceee-cCCCHHHHHHHHHHcCCCeeEeCCCCceeeHHHHHHHHH
Confidence 899999 999999999999999999887 7777777777764
No 8
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.95 E-value=1.4e-28 Score=199.10 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=100.9
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (143)
Q Consensus 14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~ 93 (143)
+...+|+|+++.+.+.+.+++++ .+|++|||+|+++||+.|+|||+|+|..|+++|||+|++|.++||+++
T Consensus 37 i~~~~lPV~y~~~~~~l~~~l~~--------~~Pd~vih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~- 107 (215)
T PRK13197 37 IIKRQLPTVFGKSAEVLKEAIEE--------VQPDAVICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPIVED- 107 (215)
T ss_pred EEEEEECCChHHHHHHHHHHHHH--------hCCCEEEEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCcccCC-
Confidence 44579999999999999888875 789999999999999999999999999999999999999999999998
Q ss_pred CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289 94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM 136 (143)
Q Consensus 94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~ 136 (143)
||++|| |+||+++|+++|++.|+|++- +++|+|++|.+|-
T Consensus 108 --gp~~~~-t~Lp~~~l~~~l~~~gip~~~S~dAG~YlCN~i~Y~sl~ 152 (215)
T PRK13197 108 --GPAAYF-STLPIKAMVKAIREAGIPASVSNTAGTFVCNHVMYGLLH 152 (215)
T ss_pred --CCceeE-cCCCHHHHHHHHHHcCCCceeccCCCceeehHHHHHHHH
Confidence 899999 999999999999999999887 6666666666553
No 9
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=99.93 E-value=3e-26 Score=180.79 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=102.1
Q ss_pred eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289 14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED 93 (143)
Q Consensus 14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~ 93 (143)
+...+|+|+++.+.+.+.+.+++ .+|+++||+|+++|++.|+|||+|+|..++++|||+|++|.++||.++
T Consensus 36 i~~~~lpv~y~~~~~~~~~~~~~--------~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~- 106 (194)
T cd00501 36 VVGLELPVVFQKAVEVLPELIEE--------HKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPG- 106 (194)
T ss_pred EEEEEcCccHHHHHHHHHHHHHH--------hCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCC-
Confidence 45578999999999999887775 789999999999999999999999999999999999999999999997
Q ss_pred CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289 94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK 137 (143)
Q Consensus 94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~ 137 (143)
||++|+ |+||+++|++++++.|+|++- +++|+|++|.+|-.
T Consensus 107 --g~~~~~-t~lp~~~l~~~l~~~g~~~~~S~dAG~YlCn~~~Y~sL~~ 152 (194)
T cd00501 107 --GPAAYF-STLPVKAIVKALREAGIPARVSNDAGTYLCNHVYYGSLHE 152 (194)
T ss_pred --CCCeee-ecCCHHHHHHHHHhcCCCceEcCCCCceeeHHHHHHHHHH
Confidence 899999 999999999999999999987 77777777777654
No 10
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=4.1e-06 Score=68.91 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=47.0
Q ss_pred ccCCCCCceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeee-------------
Q 032289 3 KEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV------------- 69 (143)
Q Consensus 3 ~~~~~~~~~~~~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAi------------- 69 (143)
+++|.++.+....++..+...+.+.+-.++ .. ...||+|..+....+++|+.|+
T Consensus 47 k~~~~s~~l~~~~~~sy~~v~~~i~e~~~~------------~~-~~aIhl~sh~~knti~i~~~af~~gy~~~d~~g~v 113 (213)
T KOG4755|consen 47 KKGGVSKYLCFKMCTSYETVDEIILELWEE------------HL-QSAIHLGSHSQKNTIQIEQSAFSSGYTQKDKCGKV 113 (213)
T ss_pred HcCCceecceecceechhhHhHHHHHhhcc------------ce-eEEEEecccccCcEEEEEEecccCCccchhhcccc
Confidence 455567777777887444333333333322 22 5667777766666666666666
Q ss_pred ---ecCCCCCCCCCCCCcccceeecC
Q 032289 70 ---NEATFLCPDQLGWQPQQIPVVLE 92 (143)
Q Consensus 70 ---N~~dfriPDn~G~qP~depI~~~ 92 (143)
|.+-|+.||+-||++++-+|+..
T Consensus 114 p~~nkv~~~~~d~~~~s~i~c~~vv~ 139 (213)
T KOG4755|consen 114 PEGNKVKCDGPDTGGRSCINCEIVVK 139 (213)
T ss_pred cCCceeEeccccccccccccHHHHHH
Confidence 66666777777777777666655
No 11
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=97.71 E-value=0.00013 Score=58.04 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=71.0
Q ss_pred EEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCCCCCC
Q 032289 18 VLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGIS 97 (143)
Q Consensus 18 VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~~~gp 97 (143)
=+++|++.+.+.+.+ |-+ ..|+.+||||.++-...|.+|+.|+=-- +.-||-.|+.|.+-++--+. -.
T Consensus 62 K~~~sYe~V~ekvpe-l~~--------~~~~~viHL~~Hs~kNtI~ieq~AFsdG-Y~~~D~nG~vPegnkv~~~~--~e 129 (166)
T PF06162_consen 62 KMEVSYEEVDEKVPE-LWK--------EQPDFVIHLASHSVKNTIYIEQKAFSDG-YCQPDKNGCVPEGNKVKCES--EE 129 (166)
T ss_pred eccchHHHHHHHhHH-HHh--------hCCCeEEEecCCCCcceEEEEehhhcCC-CcCCCCCCcCCCCCeeccCc--cc
Confidence 688999999988844 432 4589999999999999999999998654 45699999999999995552 34
Q ss_pred cceeecCCcHHHHHHHHhh
Q 032289 98 RSRQAVSFAIMSITTHFGL 116 (143)
Q Consensus 98 ~ayf~ttLPv~~iv~~l~~ 116 (143)
.... |.+..+++++.+.+
T Consensus 130 ~~lk-t~vdce~Lvkev~E 147 (166)
T PF06162_consen 130 TVLK-TFVDCEELVKEVNE 147 (166)
T ss_pred cccc-cccCHHHHHHHHHH
Confidence 5666 99999999999876
No 12
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=1.6 Score=36.20 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=36.0
Q ss_pred CCCCCCCcccceeecCCCCCCcceeecCCcHHHHHHHHhh----C-----CCccce-----e--ehhhhhh
Q 032289 77 PDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGL----Q-----SRRVTS-----R--CLSMFLS 131 (143)
Q Consensus 77 PDn~G~qP~depI~~~~~~gp~ayf~ttLPv~~iv~~l~~----~-----gipv~~-----~--~~~~~~~ 131 (143)
-|..|+.|......-+ +|+....+......+++...+ . |++|+. | |.|+|++
T Consensus 107 ~d~~g~vp~~nkv~~~---~~d~~~~s~i~c~~vv~~v~e~~~~~~~~~~gl~V~~s~dagR~lc~y~y~~ 174 (213)
T KOG4755|consen 107 KDKCGKVPEGNKVKCD---GPDTGGRSCINCEIVVKDVNERCASDGQKFGGLEVEISEDAGRYLCGYVYYS 174 (213)
T ss_pred hhhcccccCCceeEec---cccccccccccHHHHHHhhhhhhhhccccCCceEEEEcCcccceechhhhhh
Confidence 3999999999999887 564433388888777766543 2 377776 5 5555555
No 13
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=29.58 E-value=50 Score=21.14 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=16.8
Q ss_pred cCCcHHHHHHHHhhCCCccceee
Q 032289 103 VSFAIMSITTHFGLQSRRVTSRC 125 (143)
Q Consensus 103 ttLPv~~iv~~l~~~gipv~~~~ 125 (143)
|.+|+..+++.+ ++|...+++-
T Consensus 17 TRI~v~~i~~~~-~~G~s~eeI~ 38 (56)
T PF04255_consen 17 TRIPVRDILDLL-AAGESPEEIA 38 (56)
T ss_dssp SS-BHHHHHHHH-HTT--HHHHH
T ss_pred ceecHHHHHHHH-HcCCCHHHHH
Confidence 999999999999 8899988843
No 14
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.24 E-value=25 Score=31.73 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=44.4
Q ss_pred eecccchHHHHHHHHHHhhcc--------cC------CCCCccEEEEecccCCCCCcccceeeeecCCCC
Q 032289 20 EAAGDGALPTLLKTLESSISQ--------TN------TNNEQVIWIHVGVNSGSSKFALERRAVNEATFL 75 (143)
Q Consensus 20 eVS~~~a~~~L~~~ie~~v~~--------~~------~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfr 75 (143)
+||++|+.+.|.+.||..++. +. -+...+++|+-|-..|-.+|---|.+-+..-|.
T Consensus 186 DVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~ 255 (408)
T COG1219 186 DVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFG 255 (408)
T ss_pred ccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccc
Confidence 799999999999999987765 11 156778999999999988887777766665554
No 15
>PRK07077 hypothetical protein; Provisional
Probab=27.96 E-value=75 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=16.6
Q ss_pred CCCccEEEEecccCCCC-Cccc
Q 032289 44 NNEQVIWIHVGVNSGSS-KFAL 64 (143)
Q Consensus 44 ~~~p~vvLhlGva~Gr~-~i~l 64 (143)
...++.||++|++||-. .+.+
T Consensus 51 ~~~~~~vIs~G~AGgL~p~l~v 72 (238)
T PRK07077 51 ARGCAGIVSFGVAGGLDPDLAP 72 (238)
T ss_pred hcCCCEEEEEEeccccCCCCCC
Confidence 37789999999999975 3443
No 16
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=27.61 E-value=67 Score=22.52 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=24.6
Q ss_pred eecCCCCCCcceeecCCcHHHHHHHHhhCCCccce
Q 032289 89 VVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTS 123 (143)
Q Consensus 89 I~~~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~ 123 (143)
+.|+-.+|....-+|.+||..|++.|+ +|...++
T Consensus 15 ~~P~i~gGkP~I~GtRI~V~~Il~~l~-~G~s~ee 48 (79)
T COG2442 15 ITPGICGGKPCIRGTRIPVWDILEMLA-AGESIEE 48 (79)
T ss_pred eCCcccCCcceEeCceecHHHHHHHHH-CCCCHHH
Confidence 344444455555558999999999999 7887776
No 17
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=26.34 E-value=1.2e+02 Score=25.86 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=47.8
Q ss_pred HHHHHhhcccCCCCCccEEEEecccCCCCCccc---ceeeeecCCCCCCCCCCCCcccceeecCCCCCCcceeecCCcHH
Q 032289 32 KTLESSISQTNTNNEQVIWIHVGVNSGSSKFAL---ERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIM 108 (143)
Q Consensus 32 ~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~l---ErvAiN~~dfriPDn~G~qP~depI~~~~~~gp~ayf~ttLPv~ 108 (143)
+.++. +.....+.+||++|-+|---. ..|.. -+.+|...+--.||..++-+.+.+=.+ |+... .+
T Consensus 35 ~a~~~-i~~~i~~~~PDvvVii~~dH~-~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~----g~~eL------A~ 102 (284)
T PRK13366 35 KGYEF-SKQWEKEEKPDVIFLVYNDHA-TAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVI----GHPDL------AA 102 (284)
T ss_pred HHHHH-HHHHHHHhCCCEEEEEcCCcH-HhhcccCCCceEEeeCceecCcccccCCCCCCCCC----CCHHH------HH
Confidence 44443 332334688999997754432 22222 366777777555888877766655222 33332 36
Q ss_pred HHHHHHhhCCCccce
Q 032289 109 SITTHFGLQSRRVTS 123 (143)
Q Consensus 109 ~iv~~l~~~gipv~~ 123 (143)
.|++.+.++|+++..
T Consensus 103 ~i~~~l~~~g~~~~~ 117 (284)
T PRK13366 103 HIAQSVIQDDFDLTI 117 (284)
T ss_pred HHHHHHHHCCCCEee
Confidence 788888888888764
No 18
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=26.25 E-value=74 Score=18.33 Aligned_cols=21 Identities=0% Similarity=0.116 Sum_probs=18.4
Q ss_pred cCCcHHHHHHHHhhCCCccce
Q 032289 103 VSFAIMSITTHFGLQSRRVTS 123 (143)
Q Consensus 103 ttLPv~~iv~~l~~~gipv~~ 123 (143)
+++.+.++.+.+++.|+|++-
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G 22 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSG 22 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCC
Confidence 578899999999999999764
No 19
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=24.99 E-value=87 Score=25.28 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.3
Q ss_pred CCCccEEEEecccCCCC
Q 032289 44 NNEQVIWIHVGVNSGSS 60 (143)
Q Consensus 44 ~~~p~vvLhlGva~Gr~ 60 (143)
+.+|+.+|++|.+||-.
T Consensus 66 ~f~~~~II~~G~AG~l~ 82 (233)
T PRK14697 66 KFDVDAIINTGVAGGLH 82 (233)
T ss_pred hcCCCEEEEEecccCCC
Confidence 47899999999999986
No 20
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=24.85 E-value=64 Score=21.77 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=16.2
Q ss_pred HHHHHHHhhCCCccceeeh
Q 032289 108 MSITTHFGLQSRRVTSRCL 126 (143)
Q Consensus 108 ~~iv~~l~~~gipv~~~~~ 126 (143)
++|.++|++.|++|.+.++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~ 20 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHN 20 (68)
T ss_pred HHHHHHHHHcCCceEEEEc
Confidence 5789999999999998554
No 21
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=24.70 E-value=1e+02 Score=25.28 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=12.9
Q ss_pred CCccEEEEecccCC
Q 032289 45 NEQVIWIHVGVNSG 58 (143)
Q Consensus 45 ~~p~vvLhlGva~G 58 (143)
.+|+.||.+|+|||
T Consensus 59 ~~pd~IIn~GvAGg 72 (212)
T PRK06026 59 DLPDLVVSLGSAGS 72 (212)
T ss_pred CCCCEEEEecccCC
Confidence 45999999999999
No 22
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=24.00 E-value=30 Score=29.51 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=36.8
Q ss_pred ccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCCCCCCcceeecCCcHHHHHHHHhhCCCccce
Q 032289 47 QVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTS 123 (143)
Q Consensus 47 p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~ 123 (143)
..++||+|-+.|.+.=++||..-|.. +.|++- +..-+.+. ++..| | +.+++.--++.|||+-=
T Consensus 146 ~~i~IH~GG~YgdK~~al~RF~~~~~--~L~~~i----r~rL~lEN----Dd~~y-t---~~d~L~ic~~~giP~Vf 208 (275)
T PF03851_consen 146 HKINIHVGGVYGDKEAALERFIENFK--RLPESI----RKRLTLEN----DDKTY-T---VEDVLPICEKLGIPMVF 208 (275)
T ss_dssp -EEEEE----SS-HHHHHHHHHHHHH--T--HHH----HTTEEEE------SSS------HHHHHHHHHHHT--EEE
T ss_pred cEEEEeeCCCCCChHHHHHHHHHHHh--hCCHhh----hhcEEEec----CCCcc-C---HHHHHHHHHHhCCCEEE
Confidence 57999999999999999999999997 467653 33345554 33334 4 77788777888999866
No 23
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.82 E-value=79 Score=20.98 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHhhCCCccceee
Q 032289 104 SFAIMSITTHFGLQSRRVTSRC 125 (143)
Q Consensus 104 tLPv~~iv~~l~~~gipv~~~~ 125 (143)
.++.++|.+++.++|+++..++
T Consensus 50 ~~~~~~i~~ai~~aGy~~~~~~ 71 (71)
T COG2608 50 KVDIEAIIEAIEDAGYKVEEIK 71 (71)
T ss_pred cCCHHHHHHHHHHcCCCeeecC
Confidence 5899999999999999987653
No 24
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=23.76 E-value=61 Score=24.80 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=32.9
Q ss_pred EEeecccchHHHHHHHHHHhhcccCCCCCcc-EEEEecccCCCCCcccceeeeecCC
Q 032289 18 VLEAAGDGALPTLLKTLESSISQTNTNNEQV-IWIHVGVNSGSSKFALERRAVNEAT 73 (143)
Q Consensus 18 VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~-vvLhlGva~Gr~~i~lErvAiN~~d 73 (143)
-.-++++.+...+ +.++..+. ..+|+ ++|++|.+.-...+++|++.=|+..
T Consensus 48 N~Gi~G~tt~~~~-~rl~~~l~----~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~ 99 (191)
T PRK10528 48 NASISGDTSQQGL-ARLPALLK----QHQPRWVLVELGGNDGLRGFPPQQTEQTLRQ 99 (191)
T ss_pred ecCcCcccHHHHH-HHHHHHHH----hcCCCEEEEEeccCcCccCCCHHHHHHHHHH
Confidence 3456666666555 44544332 23454 5999999998777888887777654
No 25
>PF07484 Collar: Phage Tail Collar Domain; InterPro: IPR011083 This entry is represented by a domain found in Bacteriophage T4, Gp12. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This region is occasionally found in conjunction with IPR005003 from INTERPRO. Most of the proteins appear to be phage tail proteins; however some appear to be involved in other processes. For instance the RhiB protein (Q03314 from SWISSPROT) from Rhizobium leguminosarum may be involved in plant-microbe interactions []. A related protein, microcystin related protein (MrpB, Q9L3N1 from SWISSPROT) is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate (P10930 from SWISSPROT) suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop [] and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologues but the intervening sequence is not. Much of the function of P10930 from SWISSPROT appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the collar and may bind SO4. The long unconserved region maybe due to domain swapping in and out of a loop or due to rapid evolution.; PDB: 1OCY_A 2XGF_C 1H6W_A.
Probab=21.62 E-value=27 Score=22.90 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCc
Q 032289 72 ATFLCPDQLGWQP 84 (143)
Q Consensus 72 ~dfriPDn~G~qP 84 (143)
..|++||-+|+-|
T Consensus 45 ~~F~lPDlRG~~~ 57 (57)
T PF07484_consen 45 TTFNLPDLRGRFP 57 (57)
T ss_dssp SSBB--B-TT-EE
T ss_pred CCcCCCccCCCCC
Confidence 3589999999754
No 26
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=21.59 E-value=4.2e+02 Score=21.11 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=15.4
Q ss_pred CCCccEEEEecccCCCCC
Q 032289 44 NNEQVIWIHVGVNSGSSK 61 (143)
Q Consensus 44 ~~~p~vvLhlGva~Gr~~ 61 (143)
..+|+.+|.+|.+|+-..
T Consensus 53 ~~~~~~ii~~G~aG~l~~ 70 (222)
T TIGR03664 53 RAPYELVINAGIAGGFPG 70 (222)
T ss_pred hCCCCEEEEEEEcccCCC
Confidence 368999999999999763
No 27
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.39 E-value=2e+02 Score=20.15 Aligned_cols=35 Identities=11% Similarity=-0.057 Sum_probs=22.9
Q ss_pred cCCcHHHHHHHHhhCCCccce--eehhhhhhHHHHHh
Q 032289 103 VSFAIMSITTHFGLQSRRVTS--RCLSMFLSSQQLMK 137 (143)
Q Consensus 103 ttLPv~~iv~~l~~~gipv~~--~~~~~~~~~~~~~~ 137 (143)
++-+-+++.+.|++.|++++. ++.+-+....-|.+
T Consensus 40 s~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 40 SSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKE 76 (101)
T ss_dssp SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHh
Confidence 456778999999999999877 55555555444444
No 28
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=20.38 E-value=1.2e+02 Score=24.14 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCCccEEEEecccCCCC
Q 032289 44 NNEQVIWIHVGVNSGSS 60 (143)
Q Consensus 44 ~~~p~vvLhlGva~Gr~ 60 (143)
+.+|+.+|.+|.+||-.
T Consensus 64 ~~~p~~II~~G~aG~l~ 80 (228)
T TIGR01704 64 HCKPDVIINTGSAGGLA 80 (228)
T ss_pred hCCCCEEEEEeeccCCC
Confidence 37899999999999976
No 29
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=20.29 E-value=1.2e+02 Score=24.70 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=15.5
Q ss_pred CCCccEEEEecccCCCCC
Q 032289 44 NNEQVIWIHVGVNSGSSK 61 (143)
Q Consensus 44 ~~~p~vvLhlGva~Gr~~ 61 (143)
+-+|+.+|++|.+||-..
T Consensus 66 ~f~~~~IIn~G~aG~l~~ 83 (236)
T PRK06714 66 EFQPDELFMTGICGSLSN 83 (236)
T ss_pred hCCCCEEEEEEcccCCCC
Confidence 478999999999999663
No 30
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.00 E-value=92 Score=18.14 Aligned_cols=21 Identities=0% Similarity=0.113 Sum_probs=17.5
Q ss_pred cCCcHHHHHHHHhhCCCccce
Q 032289 103 VSFAIMSITTHFGLQSRRVTS 123 (143)
Q Consensus 103 ttLPv~~iv~~l~~~gipv~~ 123 (143)
+++-+.++.+.+++.|+|++-
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G 22 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSG 22 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STS
T ss_pred CcCcHHHHHHHHHHCCCCCCC
Confidence 567899999999999999875
Done!