Query 032291
Match_columns 143
No_of_seqs 115 out of 137
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 12:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04895 ACT_ACR_1 ACT domain-c 99.8 3.7E-20 8E-25 129.0 7.8 51 91-141 1-51 (72)
2 cd04897 ACT_ACR_3 ACT domain-c 99.8 2.5E-18 5.4E-23 120.7 7.6 51 91-141 1-51 (75)
3 PRK01759 glnD PII uridylyl-tra 99.7 1.2E-16 2.7E-21 149.0 9.0 65 77-141 769-833 (854)
4 PRK05007 PII uridylyl-transfer 99.7 1.3E-16 2.8E-21 149.3 9.1 65 77-141 794-858 (884)
5 cd04896 ACT_ACR-like_3 ACT dom 99.6 4.4E-16 9.5E-21 109.4 7.0 46 92-137 1-48 (75)
6 TIGR01693 UTase_glnD [Protein- 99.5 6.2E-14 1.3E-18 129.9 9.7 65 77-141 765-829 (850)
7 PRK04374 PII uridylyl-transfer 99.4 3.7E-13 8E-18 126.6 9.3 65 77-141 782-846 (869)
8 PRK00275 glnD PII uridylyl-tra 99.4 3.8E-13 8.2E-18 126.5 9.3 65 77-141 800-864 (895)
9 PRK05092 PII uridylyl-transfer 99.4 6E-13 1.3E-17 124.9 9.5 65 77-141 829-893 (931)
10 cd04925 ACT_ACR_2 ACT domain-c 99.4 7.2E-13 1.6E-17 89.8 7.1 50 92-141 1-50 (74)
11 cd04927 ACT_ACR-like_2 Second 99.4 1.6E-12 3.4E-17 89.1 7.6 49 93-141 2-51 (76)
12 PRK03381 PII uridylyl-transfer 99.4 1.2E-12 2.5E-17 121.5 9.1 65 77-141 693-757 (774)
13 cd04900 ACT_UUR-like_1 ACT dom 99.4 1.9E-12 4.1E-17 86.8 7.5 51 91-141 1-52 (73)
14 COG2844 GlnD UTP:GlnB (protein 99.3 2.6E-12 5.7E-17 121.8 7.8 67 75-141 774-841 (867)
15 PRK03059 PII uridylyl-transfer 99.3 5.1E-12 1.1E-16 118.5 9.0 65 77-141 772-836 (856)
16 TIGR01693 UTase_glnD [Protein- 99.2 7.1E-11 1.5E-15 109.7 9.6 65 77-141 654-719 (850)
17 PRK01759 glnD PII uridylyl-tra 99.2 6.8E-11 1.5E-15 110.9 9.4 66 77-142 663-729 (854)
18 PRK05007 PII uridylyl-transfer 99.1 2.4E-10 5.2E-15 107.6 9.4 65 77-141 687-752 (884)
19 cd04926 ACT_ACR_4 C-terminal 99.1 4.9E-10 1.1E-14 75.4 7.6 50 92-141 2-51 (72)
20 cd04899 ACT_ACR-UUR-like_2 C-t 99.1 6.5E-10 1.4E-14 71.8 7.5 50 92-141 1-50 (70)
21 PRK05092 PII uridylyl-transfer 98.7 5E-08 1.1E-12 92.2 9.3 65 77-141 718-783 (931)
22 cd04873 ACT_UUR-ACR-like ACT d 98.7 1.5E-07 3.3E-12 59.8 7.4 50 92-141 1-50 (70)
23 PRK00275 glnD PII uridylyl-tra 98.7 1.1E-07 2.3E-12 90.2 9.3 64 78-141 688-755 (895)
24 cd04928 ACT_TyrKc Uncharacteri 98.6 1.9E-07 4.1E-12 64.7 7.1 48 94-141 4-52 (68)
25 PF01842 ACT: ACT domain; Int 98.5 4.7E-07 1E-11 56.9 6.8 49 92-140 1-51 (66)
26 PRK03381 PII uridylyl-transfer 98.5 4.3E-07 9.4E-12 84.8 9.3 64 77-141 586-649 (774)
27 PRK03059 PII uridylyl-transfer 98.2 6.4E-06 1.4E-10 78.0 9.0 65 77-141 664-729 (856)
28 PRK04374 PII uridylyl-transfer 98.0 2.3E-05 5E-10 74.7 9.3 64 78-141 676-741 (869)
29 cd04894 ACT_ACR-like_1 ACT dom 97.9 2.4E-05 5.3E-10 55.4 4.6 49 92-140 1-49 (69)
30 PRK00227 glnD PII uridylyl-tra 97.7 4E-05 8.7E-10 71.9 4.0 54 76-139 622-675 (693)
31 PF13740 ACT_6: ACT domain; PD 97.6 0.00028 6E-09 47.8 6.4 46 93-138 4-49 (76)
32 cd04870 ACT_PSP_1 CT domains f 97.5 0.00029 6.3E-09 47.3 5.4 46 93-138 1-46 (75)
33 PF13291 ACT_4: ACT domain; PD 97.4 0.00079 1.7E-08 45.0 6.4 38 91-128 6-43 (80)
34 cd04877 ACT_TyrR N-terminal AC 97.4 0.00047 1E-08 46.0 5.0 34 94-127 3-36 (74)
35 cd04875 ACT_F4HF-DF N-terminal 97.3 0.00079 1.7E-08 44.7 5.8 35 93-127 1-35 (74)
36 cd04893 ACT_GcvR_1 ACT domains 97.3 0.00079 1.7E-08 45.8 5.5 39 93-131 3-41 (77)
37 cd04869 ACT_GcvR_2 ACT domains 97.1 0.0019 4.1E-08 42.8 5.8 36 93-128 1-36 (81)
38 cd02116 ACT ACT domains are co 97.0 0.0059 1.3E-07 34.1 6.3 46 94-139 1-47 (60)
39 cd04887 ACT_MalLac-Enz ACT_Mal 97.0 0.0055 1.2E-07 39.8 7.0 35 94-128 2-36 (74)
40 cd04886 ACT_ThrD-II-like C-ter 96.9 0.0045 9.8E-08 38.5 6.2 34 94-127 1-34 (73)
41 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.9 0.0057 1.2E-07 38.6 6.7 45 94-138 3-48 (79)
42 cd04879 ACT_3PGDH-like ACT_3PG 96.9 0.0053 1.1E-07 37.9 6.0 44 94-137 2-47 (71)
43 cd04878 ACT_AHAS N-terminal AC 96.8 0.0087 1.9E-07 37.1 6.9 46 94-139 3-49 (72)
44 cd04872 ACT_1ZPV ACT domain pr 96.8 0.0027 5.9E-08 43.6 4.9 43 93-135 3-45 (88)
45 PRK00194 hypothetical protein; 96.7 0.0037 7.9E-08 42.8 4.8 41 92-132 4-44 (90)
46 cd04876 ACT_RelA-SpoT ACT dom 96.5 0.017 3.7E-07 34.1 6.2 36 94-129 1-36 (71)
47 cd04874 ACT_Af1403 N-terminal 96.5 0.022 4.7E-07 35.6 6.9 37 93-129 2-38 (72)
48 cd04889 ACT_PDH-BS-like C-term 96.5 0.015 3.4E-07 36.3 6.2 46 94-139 1-47 (56)
49 cd04903 ACT_LSD C-terminal ACT 96.5 0.021 4.5E-07 35.4 6.7 33 94-126 2-34 (71)
50 COG2844 GlnD UTP:GlnB (protein 96.5 0.0097 2.1E-07 57.9 7.5 66 76-141 669-735 (867)
51 cd04908 ACT_Bt0572_1 N-termina 96.3 0.022 4.7E-07 37.1 6.5 43 93-137 3-45 (66)
52 cd04882 ACT_Bt0572_2 C-termina 96.3 0.014 3.1E-07 36.4 5.3 36 93-128 1-36 (65)
53 cd04888 ACT_PheB-BS C-terminal 96.1 0.032 6.9E-07 36.1 6.3 34 94-127 3-36 (76)
54 PRK11589 gcvR glycine cleavage 95.9 0.011 2.3E-07 47.7 4.0 50 88-137 5-54 (190)
55 PRK08577 hypothetical protein; 95.7 0.13 2.9E-06 38.3 8.8 41 88-128 53-93 (136)
56 PRK11589 gcvR glycine cleavage 95.6 0.023 4.9E-07 45.8 5.0 45 92-136 96-142 (190)
57 cd04909 ACT_PDH-BS C-terminal 95.5 0.067 1.5E-06 34.4 6.0 34 94-127 4-37 (69)
58 cd04884 ACT_CBS C-terminal ACT 95.4 0.084 1.8E-06 34.6 6.3 34 94-127 2-35 (72)
59 cd04905 ACT_CM-PDT C-terminal 95.3 0.15 3.2E-06 34.3 7.3 46 92-137 2-48 (80)
60 PRK06027 purU formyltetrahydro 94.8 0.095 2.1E-06 44.2 6.5 40 90-129 5-46 (286)
61 cd04902 ACT_3PGDH-xct C-termin 94.6 0.11 2.3E-06 33.1 4.9 43 95-137 3-47 (73)
62 cd04883 ACT_AcuB C-terminal AC 94.5 0.31 6.6E-06 31.2 6.9 36 92-127 2-37 (72)
63 cd04901 ACT_3PGDH C-terminal A 94.4 0.032 6.9E-07 35.5 2.1 35 96-130 4-38 (69)
64 COG3830 ACT domain-containing 94.2 0.069 1.5E-06 39.5 3.8 30 92-121 4-33 (90)
65 PRK07334 threonine dehydratase 93.7 0.22 4.8E-06 43.2 6.6 36 92-127 327-362 (403)
66 cd04904 ACT_AAAH ACT domain of 93.4 0.16 3.4E-06 34.3 4.1 29 94-122 3-31 (74)
67 PRK13010 purU formyltetrahydro 93.3 0.19 4E-06 42.8 5.3 34 92-125 10-43 (289)
68 PRK13011 formyltetrahydrofolat 93.2 0.26 5.6E-06 41.8 6.0 34 92-125 8-41 (286)
69 PRK04435 hypothetical protein; 93.1 0.46 1E-05 36.5 6.8 48 81-128 59-106 (147)
70 TIGR00119 acolac_sm acetolacta 92.9 0.6 1.3E-05 36.8 7.3 36 93-128 3-38 (157)
71 PRK11092 bifunctional (p)ppGpp 92.8 0.25 5.5E-06 46.9 5.9 41 90-130 625-665 (702)
72 TIGR00655 PurU formyltetrahydr 92.5 0.34 7.4E-06 41.0 5.9 35 93-127 2-36 (280)
73 cd04931 ACT_PAH ACT domain of 92.4 0.37 8E-06 34.6 5.2 54 84-137 7-61 (90)
74 PRK10872 relA (p)ppGpp synthet 92.0 0.79 1.7E-05 44.2 8.2 39 90-128 665-703 (743)
75 CHL00100 ilvH acetohydroxyacid 91.9 0.63 1.4E-05 37.4 6.4 34 93-126 4-37 (174)
76 COG2716 GcvR Glycine cleavage 91.5 0.18 3.8E-06 41.4 2.9 30 92-121 93-122 (176)
77 cd04880 ACT_AAAH-PDT-like ACT 91.2 1.5 3.2E-05 28.8 6.7 27 96-122 4-30 (75)
78 PRK11895 ilvH acetolactate syn 91.1 1.2 2.6E-05 35.3 7.2 36 93-128 4-39 (161)
79 COG0317 SpoT Guanosine polypho 90.7 0.93 2E-05 43.6 7.3 55 81-135 616-671 (701)
80 TIGR00691 spoT_relA (p)ppGpp s 90.5 1 2.2E-05 42.6 7.2 43 89-131 608-650 (683)
81 PRK08818 prephenate dehydrogen 90.3 0.91 2E-05 40.0 6.4 47 90-137 294-341 (370)
82 PRK11899 prephenate dehydratas 89.2 1.9 4.1E-05 36.7 7.3 47 91-137 194-241 (279)
83 cd04929 ACT_TPH ACT domain of 89.0 0.79 1.7E-05 31.6 4.1 43 94-137 3-47 (74)
84 PRK00227 glnD PII uridylyl-tra 88.8 1.3 2.9E-05 42.2 6.7 45 93-138 548-593 (693)
85 PRK06737 acetolactate synthase 87.9 2.7 5.9E-05 29.7 6.3 34 93-126 4-37 (76)
86 cd04885 ACT_ThrD-I Tandem C-te 87.8 2.2 4.7E-05 28.0 5.4 33 94-127 1-33 (68)
87 PRK08178 acetolactate synthase 87.6 3.1 6.7E-05 31.0 6.7 50 85-135 3-52 (96)
88 cd04891 ACT_AK-LysC-DapG-like_ 87.1 3.1 6.7E-05 24.7 5.5 28 98-125 8-35 (61)
89 PRK13562 acetolactate synthase 86.8 2.7 5.9E-05 30.6 5.9 37 93-129 4-40 (84)
90 cd04906 ACT_ThrD-I_1 First of 85.8 4.1 8.8E-05 28.0 6.2 27 93-121 3-29 (85)
91 cd04930 ACT_TH ACT domain of t 85.7 2.2 4.7E-05 31.9 5.1 33 91-123 41-73 (115)
92 COG2716 GcvR Glycine cleavage 85.1 0.39 8.4E-06 39.4 0.9 50 88-137 2-51 (176)
93 COG4747 ACT domain-containing 84.6 3.1 6.7E-05 33.1 5.7 44 92-135 70-113 (142)
94 cd04913 ACT_AKii-LysC-BS-like_ 83.9 3.4 7.4E-05 25.7 4.7 27 98-124 9-35 (75)
95 COG0077 PheA Prephenate dehydr 83.3 4.3 9.4E-05 35.1 6.5 48 90-137 193-241 (279)
96 PF13840 ACT_7: ACT domain ; P 83.2 2.8 6.1E-05 27.7 4.3 36 88-123 3-42 (65)
97 cd04871 ACT_PSP_2 ACT domains 81.5 1.1 2.5E-05 31.2 2.0 29 93-121 1-30 (84)
98 PRK10622 pheA bifunctional cho 81.0 6.2 0.00013 35.0 6.8 47 91-137 297-344 (386)
99 PRK11152 ilvM acetolactate syn 80.7 8.1 0.00018 27.2 6.1 34 93-126 5-38 (76)
100 PRK06382 threonine dehydratase 80.6 7.9 0.00017 33.7 7.2 38 88-125 327-364 (406)
101 cd04898 ACT_ACR-like_4 ACT dom 80.0 0.61 1.3E-05 33.9 0.2 47 94-140 3-53 (77)
102 PF13710 ACT_5: ACT domain; PD 79.8 7.7 0.00017 25.8 5.5 30 100-129 1-30 (63)
103 COG4747 ACT domain-containing 79.3 4.3 9.3E-05 32.4 4.7 39 94-132 6-44 (142)
104 PRK11790 D-3-phosphoglycerate 76.8 4 8.6E-05 36.0 4.3 60 74-135 323-382 (409)
105 cd04868 ACT_AK-like ACT domain 76.3 6.3 0.00014 22.9 3.9 33 93-125 2-37 (60)
106 COG1707 ACT domain-containing 76.2 5.7 0.00012 33.5 4.8 37 94-130 5-41 (218)
107 PRK06349 homoserine dehydrogen 75.6 9.6 0.00021 33.7 6.4 48 93-140 350-397 (426)
108 COG0788 PurU Formyltetrahydrof 75.6 7.2 0.00016 34.3 5.5 38 90-127 6-43 (287)
109 TIGR00719 sda_beta L-serine de 74.4 14 0.00031 29.6 6.6 49 80-128 134-185 (208)
110 TIGR01127 ilvA_1Cterm threonin 74.0 4.6 0.0001 34.4 3.9 33 93-125 307-339 (380)
111 PRK10820 DNA-binding transcrip 67.7 8.4 0.00018 34.8 4.3 35 94-128 3-37 (520)
112 PRK11898 prephenate dehydratas 67.1 13 0.00029 31.3 5.2 47 91-137 196-244 (283)
113 cd04919 ACT_AK-Hom3_2 ACT doma 64.6 32 0.00069 21.4 6.0 34 92-125 2-38 (66)
114 TIGR01270 Trp_5_monoox tryptop 64.0 14 0.00029 34.4 5.0 39 84-122 24-62 (464)
115 PRK08198 threonine dehydratase 64.0 13 0.00029 32.0 4.7 38 88-125 324-361 (404)
116 PLN02317 arogenate dehydratase 61.5 36 0.00077 30.7 7.0 33 91-123 283-315 (382)
117 cd04922 ACT_AKi-HSDH-ThrA_2 AC 61.2 19 0.00041 22.2 3.9 32 92-123 2-36 (66)
118 COG2150 Predicted regulator of 61.1 17 0.00038 29.8 4.6 35 90-124 92-128 (167)
119 TIGR01268 Phe4hydrox_tetr phen 59.1 19 0.00041 33.2 4.9 32 91-122 16-47 (436)
120 cd04892 ACT_AK-like_2 ACT doma 58.3 21 0.00046 21.1 3.6 26 99-124 11-36 (65)
121 cd04890 ACT_AK-like_1 ACT doma 57.8 23 0.00049 22.1 3.9 24 99-122 11-34 (62)
122 PRK06545 prephenate dehydrogen 57.1 18 0.00039 30.9 4.3 39 88-126 287-325 (359)
123 cd04924 ACT_AK-Arch_2 ACT doma 51.6 34 0.00073 21.0 3.9 33 93-125 3-38 (66)
124 PF03551 PadR: Transcriptional 51.2 59 0.0013 21.5 5.2 39 101-140 30-68 (75)
125 cd04921 ACT_AKi-HSDH-ThrA-like 48.9 71 0.0015 20.6 5.6 34 92-125 2-38 (80)
126 cd04932 ACT_AKiii-LysC-EC_1 AC 48.4 35 0.00075 23.2 3.8 31 92-122 2-35 (75)
127 cd04937 ACT_AKi-DapG-BS_2 ACT 47.8 40 0.00086 21.6 3.9 28 93-120 3-33 (64)
128 COG4492 PheB ACT domain-contai 41.9 29 0.00063 28.0 3.0 29 93-121 74-102 (150)
129 COG3283 TyrR Transcriptional r 40.9 31 0.00066 32.4 3.4 36 94-129 3-38 (511)
130 PRK08526 threonine dehydratase 40.7 47 0.001 29.4 4.4 37 88-124 323-359 (403)
131 cd04935 ACT_AKiii-DAPDC_1 ACT 39.7 36 0.00079 23.1 2.8 25 98-122 11-35 (75)
132 COG2061 ACT-domain-containing 37.9 52 0.0011 27.1 3.9 34 94-127 8-41 (170)
133 cd04912 ACT_AKiii-LysC-EC-like 37.4 70 0.0015 21.2 3.9 31 92-122 2-35 (75)
134 PF13670 PepSY_2: Peptidase pr 36.6 67 0.0014 21.8 3.8 29 105-133 31-59 (83)
135 cd04916 ACT_AKiii-YclM-BS_2 AC 36.3 1E+02 0.0022 18.8 5.9 33 93-125 3-38 (66)
136 PRK06635 aspartate kinase; Rev 35.5 64 0.0014 27.7 4.3 34 89-122 338-374 (404)
137 cd04923 ACT_AK-LysC-DapG-like_ 34.8 49 0.0011 19.9 2.6 25 99-123 11-35 (63)
138 PRK13581 D-3-phosphoglycerate 34.3 74 0.0016 29.0 4.7 40 87-126 448-487 (526)
139 TIGR02079 THD1 threonine dehyd 33.7 70 0.0015 28.1 4.4 36 88-123 322-357 (409)
140 cd07247 SgaA_N_like N-terminal 32.7 1.5E+02 0.0032 19.6 6.2 43 93-141 64-106 (114)
141 PRK06635 aspartate kinase; Rev 32.5 1.1E+02 0.0024 26.3 5.3 35 91-125 262-297 (404)
142 TIGR00656 asp_kin_monofn aspar 32.4 1E+02 0.0022 26.5 5.0 33 89-121 335-370 (401)
143 cd04933 ACT_AK1-AT_1 ACT domai 31.6 58 0.0013 22.7 2.9 27 96-122 9-35 (78)
144 cd04936 ACT_AKii-LysC-BS-like_ 29.5 77 0.0017 19.0 2.9 25 99-123 11-35 (63)
145 PRK08639 threonine dehydratase 29.1 1E+02 0.0022 27.1 4.6 35 88-122 333-367 (420)
146 cd04907 ACT_ThrD-I_2 Second of 27.8 2.1E+02 0.0046 19.8 5.7 31 93-124 3-33 (81)
147 cd01423 MGS_CPS_I_III Methylgl 27.2 76 0.0016 22.6 2.9 27 93-120 4-30 (116)
148 PF02319 E2F_TDP: E2F/DP famil 26.9 52 0.0011 22.3 1.9 17 104-120 45-61 (71)
149 cd07263 Glo_EDI_BRP_like_16 Th 26.7 1.5E+02 0.0033 19.1 4.1 35 105-142 78-112 (119)
150 cd07240 ED_TypeI_classII_N N-t 26.0 1.4E+02 0.003 19.6 3.9 37 103-141 69-105 (117)
151 cd07253 Glo_EDI_BRP_like_2 Thi 25.9 2E+02 0.0042 18.8 4.9 37 105-141 79-116 (125)
152 smart00596 PRE_C2HC PRE_C2HC d 25.4 1.4E+02 0.003 21.3 3.9 31 107-137 3-35 (69)
153 PF12681 Glyoxalase_2: Glyoxal 25.3 2E+02 0.0043 18.6 5.7 37 103-141 65-101 (108)
154 PRK09224 threonine dehydratase 25.2 2.7E+02 0.0059 25.4 6.7 45 89-135 326-370 (504)
155 cd08357 Glo_EDI_BRP_like_18 Th 24.3 1.7E+02 0.0037 19.4 4.1 39 103-141 76-116 (125)
156 PF05088 Bac_GDH: Bacterial NA 23.6 2.7E+02 0.0058 29.8 7.0 56 86-141 484-544 (1528)
157 COG0813 DeoD Purine-nucleoside 23.0 1.4E+02 0.003 25.8 4.2 60 75-139 98-164 (236)
158 TIGR03433 padR_acidobact trans 22.1 2.2E+02 0.0047 20.1 4.4 39 101-140 38-76 (100)
159 cd07238 Glo_EDI_BRP_like_5 Thi 21.8 1.6E+02 0.0035 19.5 3.6 35 105-141 68-102 (112)
160 TIGR00656 asp_kin_monofn aspar 21.5 1.6E+02 0.0035 25.2 4.3 34 89-122 258-294 (401)
161 cd07261 Glo_EDI_BRP_like_11 Th 21.1 1.8E+02 0.0038 19.3 3.7 47 91-141 60-106 (114)
162 PRK08210 aspartate kinase I; R 20.6 2.6E+02 0.0057 24.2 5.4 37 89-125 269-306 (403)
163 PF14830 Haemocyan_bet_s: Haem 20.5 27 0.00059 26.4 -0.5 14 105-118 57-70 (103)
164 PF09904 HTH_43: Winged helix- 20.1 1.1E+02 0.0024 22.8 2.7 32 104-138 37-68 (90)
No 1
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=3.7e-20 Score=128.97 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=49.8
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
+||+||.+.||||||++|+++|.++||+|++|+|+|.|+|++|+|||+|.+
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~ 51 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL 51 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC
Confidence 699999999999999999999999999999999999999999999999975
No 2
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.76 E-value=2.5e-18 Score=120.73 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=49.8
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
+|||||.+.||||||++|+++|.++||+|..|+|+|.|+++.|+|||+|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~ 51 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD 51 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC
Confidence 699999999999999999999999999999999999999999999999975
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.67 E-value=1.2e-16 Score=149.03 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.+|+|.|||+.++++|++||.+.||||||++|+++|.++|++|+.|+|+|.|+++.|+|||+|.+
T Consensus 769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~ 833 (854)
T PRK01759 769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ 833 (854)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC
Confidence 46799999999999999999999999999999999999999999999999999999999999875
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.67 E-value=1.3e-16 Score=149.33 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=62.7
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.+|+|.|||+.|+++|++||.+.||+|||++|+++|.++||+|+.|+|+|.|+++.|+|||+|.+
T Consensus 794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~ 858 (884)
T PRK05007 794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD 858 (884)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC
Confidence 46699999999999999999999999999999999999999999999999999999999999865
No 5
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.64 E-value=4.4e-16 Score=109.38 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=45.7
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE--eCCCcceEEEEE
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF--LDSSGKHNKFAI 137 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS--TdG~~~~DVFyV 137 (143)
||+||.+.||+|||++|+++|+++||+|+.|+|+ |.|+++.|+|||
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv 48 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV 48 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE
Confidence 7999999999999999999999999999999999 999999999999
No 6
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.51 E-value=6.2e-14 Score=129.85 Aligned_cols=65 Identities=28% Similarity=0.354 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.+|+|.|||+.++++|+++|.+.||||||++|+++|.++|++|+.|+|+|.|++..|+||||+..
T Consensus 765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~ 829 (850)
T TIGR01693 765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF 829 (850)
T ss_pred CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC
Confidence 56799999999999999999999999999999999999999999999999999999999999864
No 7
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.44 E-value=3.7e-13 Score=126.65 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=62.3
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
-+|+|.|||+.++++|+++|.+.||+|||++|+++|.++||+|..|+|+|.|+++.|+|||+|.+
T Consensus 782 ~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~ 846 (869)
T PRK04374 782 FAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH 846 (869)
T ss_pred CCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 35699999999999999999999999999999999999999999999999999999999999865
No 8
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.43 E-value=3.8e-13 Score=126.53 Aligned_cols=65 Identities=25% Similarity=0.238 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.+|+|.|||+.+.++|+|+|.+.||+|||++|+++|.++||+|..|+|+|.|+++.|+|||+|.+
T Consensus 800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~ 864 (895)
T PRK00275 800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD 864 (895)
T ss_pred CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC
Confidence 45799999999999999999999999999999999999999999999999999999999999865
No 9
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.42 E-value=6e-13 Score=124.94 Aligned_cols=65 Identities=29% Similarity=0.433 Sum_probs=62.4
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.+|+|.|||+.++.+|+|+|.+.||+|||++|+++|.++|++|..|+|+|.|+++.|+|||+|.+
T Consensus 829 ~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~ 893 (931)
T PRK05092 829 VPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLF 893 (931)
T ss_pred CCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999854
No 10
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.41 E-value=7.2e-13 Score=89.79 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=48.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
||++|.+.||+|||.+++++|.++||+|..|+|.|-|+.+.|+|||+|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~ 50 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEE 50 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCc
Confidence 79999999999999999999999999999999999999999999999864
No 11
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.39 E-value=1.6e-12 Score=89.07 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=46.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 141 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST-dG~~~~DVFyVTD~d 141 (143)
++||.+.||+|||++++++|.++||+|..|+|+| .++++.|+|||+|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~ 51 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR 51 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC
Confidence 6899999999999999999999999999999996 999999999999865
No 12
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.39 E-value=1.2e-12 Score=121.52 Aligned_cols=65 Identities=31% Similarity=0.363 Sum_probs=62.5
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.+|+|.+||+.++++|+|+|.+.||+|||++|+++|.++|+||..|+|+|.|+++.|+|||+|.+
T Consensus 693 ~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~ 757 (774)
T PRK03381 693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA 757 (774)
T ss_pred CCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence 45699999999999999999999999999999999999999999999999999999999999875
No 13
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.38 E-value=1.9e-12 Score=86.75 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=47.2
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEEeccc
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITKAY 141 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd-G~~~~DVFyVTD~d 141 (143)
++-|+|.+.||+|||++++.+|..+||+|..|+|.|- +++++|+|||+|.+
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 4678999999999999999999999999999999887 58999999999865
No 14
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.6e-12 Score=121.76 Aligned_cols=67 Identities=27% Similarity=0.361 Sum_probs=63.4
Q ss_pred ccCC-CEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 75 TIPT-PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 75 ~~~~-PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.++- |+|.|.|+.+...|++||.+.||+|||.++.++|.|+||+|..|+|.|.|+++.|+|||||..
T Consensus 774 ~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~ 841 (867)
T COG2844 774 HFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD 841 (867)
T ss_pred eeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc
Confidence 4443 799999999999999999999999999999999999999999999999999999999999875
No 15
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.32 E-value=5.1e-12 Score=118.52 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=61.3
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.+|+|.|+|+.++++|+|+|.+.||+|||++|+++|..+||+|..|+|+|.|+++.|+|||++.+
T Consensus 772 ~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~ 836 (856)
T PRK03059 772 ITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSG 836 (856)
T ss_pred CCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCC
Confidence 45699999999999999999999999999999999999999999999999999999999997543
No 16
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.20 E-value=7.1e-11 Score=109.72 Aligned_cols=65 Identities=25% Similarity=0.246 Sum_probs=62.0
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS-TdG~~~~DVFyVTD~d 141 (143)
+.|.|.|+|+.+..+|.|+|.+.||+|||.+|+.+|..+||+|..|+|. |.|++++|+|||+|.+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~ 719 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF 719 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence 5689999999999999999999999999999999999999999999999 8999999999999875
No 17
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.19 E-value=6.8e-11 Score=110.88 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=62.5
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEecccC
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAYV 142 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST-dG~~~~DVFyVTD~d~ 142 (143)
..|.|.|+|+.+..+|.|.|.+.||+|||+.|+.+|..+||+|..|+|.| .+++++|+|||+|.+.
T Consensus 663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g 729 (854)
T PRK01759 663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNG 729 (854)
T ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCC
Confidence 46889999999999999999999999999999999999999999999988 8999999999998753
No 18
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.12 E-value=2.4e-10 Score=107.59 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=61.8
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~-~~~DVFyVTD~d 141 (143)
+.|.|.|+|+.+..+|.|+|.+.||+|||..|+.+|..+||+|..|+|.|-++ +++|+|||+|.+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~ 752 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD 752 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC
Confidence 57899999999999999999999999999999999999999999999998777 899999999876
No 19
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.10 E-value=4.9e-10 Score=75.40 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=47.0
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
|-+.|...||+|+|++++++|.++|++|..|.|.+.++..+|+|||+|.+
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~ 51 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN 51 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC
Confidence 56889999999999999999999999999999999988999999999865
No 20
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.08 E-value=6.5e-10 Score=71.82 Aligned_cols=50 Identities=34% Similarity=0.420 Sum_probs=47.8
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
|+++|...||+|+|.+++++|.++|++|..+.+.+.++++.|.|||++.+
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~ 50 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD 50 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC
Confidence 78999999999999999999999999999999999999999999998765
No 21
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.73 E-value=5e-08 Score=92.17 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST-dG~~~~DVFyVTD~d 141 (143)
.+|.|.|.++.+..+|.|.|.+.||+|+|.+|+.+|..+||||..|+|.| .++.++|+|||+|.+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~ 783 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF 783 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC
Confidence 46789999999999999999999999999999999999999999999988 777899999998765
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.67 E-value=1.5e-07 Score=59.81 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=46.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
|.+.|...||+|+|.+++++|.+.|++|..+++.+.+++..+.|+|.+.+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 46889999999999999999999999999999999888999999998754
No 23
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.66 E-value=1.1e-07 Score=90.21 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=57.2
Q ss_pred CCEEEEcCCCC---CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEEeccc
Q 032291 78 TPKVIIDLDSD---PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 141 (143)
Q Consensus 78 ~PrV~IDNdss---~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS-TdG~~~~DVFyVTD~d 141 (143)
.|.|.+.+... ..+|-|.|.+.||+||+.+|+.+|..+||||..|+|. +..++++|+|+|+|.+
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~ 755 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD 755 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence 46677888776 6899999999999999999999999999999999985 5667889999999865
No 24
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.61 E-value=1.9e-07 Score=64.74 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=43.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 141 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~IST-dG~~~~DVFyVTD~d 141 (143)
|-|...||+|++..++.+|..+||||..|+|.| ..++.+|+|+|+|.+
T Consensus 4 I~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~ 52 (68)
T cd04928 4 ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK 52 (68)
T ss_pred EEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC
Confidence 568899999999999999999999999999996 466889999999876
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.53 E-value=4.7e-07 Score=56.92 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=43.6
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC--cceEEEEEecc
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFAITKA 140 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~--~~~DVFyVTD~ 140 (143)
|.|.|...||+|+|.++.++|.++|+||..+++.++++ +.+..+.+.|.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~ 51 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE 51 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC
Confidence 57889999999999999999999999999999999988 66777766654
No 26
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.52 E-value=4.3e-07 Score=84.82 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
..|.|.+.++. ...|.|.|...||+||+..|+.+|..+|+||..|.|.|.++++.|+|+|++.+
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~ 649 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF 649 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 67899999988 99999999999999999999999999999999999999888999999999854
No 27
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.20 E-value=6.4e-06 Score=77.97 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=58.7
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEEeccc
Q 032291 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 141 (143)
Q Consensus 77 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS-TdG~~~~DVFyVTD~d 141 (143)
+.|.|.+.......+|-|-|.+.||+||+..++.+|..+||||..|.|. +..+.++|+|+|+|.+
T Consensus 664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~ 729 (856)
T PRK03059 664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE 729 (856)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence 3567779898899999999999999999999999999999999999995 5677889999999864
No 28
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.04 E-value=2.3e-05 Score=74.66 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=55.9
Q ss_pred CCEEEE-cCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032291 78 TPKVII-DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 141 (143)
Q Consensus 78 ~PrV~I-DNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST-dG~~~~DVFyVTD~d 141 (143)
.|.|.+ +......+|-|-|.+.||+||+..|+.+|..+||||..|+|.| ..+.++|+|+|+|.+
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~ 741 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD 741 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC
Confidence 344554 4466778999999999999999999999999999999999997 677899999999875
No 29
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=2.4e-05 Score=55.41 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=46.5
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 140 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~ 140 (143)
|+|.|.-.||.||=-|+.+++-+.||+|.|+.++|||.|-.=+|.|.-.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~ 49 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR 49 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC
Confidence 6899999999999999999999999999999999999999999999754
No 30
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=97.66 E-value=4e-05 Score=71.90 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=49.7
Q ss_pred cCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEec
Q 032291 76 IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 139 (143)
Q Consensus 76 ~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD 139 (143)
-.+|+|.... +|+||.+.||+|+|+.++++|- .|..|+|+|-|...+|+||++.
T Consensus 622 ~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~ 675 (693)
T PRK00227 622 PGITATFWHG------NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP 675 (693)
T ss_pred CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC
Confidence 5677888775 8999999999999999999999 8999999999999999999974
No 31
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.60 E-value=0.00028 Score=47.84 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=39.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 138 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVT 138 (143)
||.|...||||++.+++++|.+.|.||......+-|++|.=.+-|.
T Consensus 4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~ 49 (76)
T PF13740_consen 4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVS 49 (76)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEE
Confidence 7899999999999999999999999999999999999988777663
No 32
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.50 E-value=0.00029 Score=47.25 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=39.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 138 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVT 138 (143)
+|.|...||||++.+++++|.+.|+||....-.+.++.|.=.|.|.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~ 46 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQ 46 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEE
Confidence 5789999999999999999999999999998777777665566553
No 33
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.38 E-value=0.00079 Score=45.04 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=32.0
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
-+-++|...||+|+|.+|++++.+.|.+|....+.+..
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~ 43 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNK 43 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEec
Confidence 35689999999999999999999999999999999954
No 34
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.35 E-value=0.00047 Score=46.03 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=32.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
++|.+.||.|+|.+|+++|.+.|.+|....+.++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 6899999999999999999999999999999887
No 35
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.00079 Score=44.68 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
|+.|...||+|++.++++.|.+.|+||....-.++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 58899999999999999999999999999877753
No 36
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.28 E-value=0.00079 Score=45.82 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=36.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 131 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~ 131 (143)
|+.+...||+|+...+++.|.+.|+||........+++|
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F 41 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF 41 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence 688999999999999999999999999999999988877
No 37
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.09 E-value=0.0019 Score=42.80 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=33.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
++.|...||+|++.++++.|.+.|+||......+++
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 478999999999999999999999999999998887
No 38
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.97 E-value=0.0059 Score=34.06 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=36.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC-CcceEEEEEec
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 139 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG-~~~~DVFyVTD 139 (143)
+.+...|++|+|.++.++|.+.|++|.+....... .+....++.++
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD 47 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence 46788899999999999999999999999987754 44455555444
No 39
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0055 Score=39.78 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=32.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
++|...||+|+|.+++++|.+.|.+|...+.....
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~ 36 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG 36 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec
Confidence 68999999999999999999999999998887753
No 40
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0045 Score=38.53 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
+.|...||+|+|.+++++|.+.|.+|..-....+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3577889999999999999999999997776654
No 41
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.0057 Score=38.62 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEEe
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAIT 138 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~-~~~DVFyVT 138 (143)
+.|...||+|+|.+++++|.+.|.+|.+.......+ ......+++
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 678999999999999999999999999998766533 333344444
No 42
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.86 E-value=0.0053 Score=37.90 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=36.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC--CcceEEEEE
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAI 137 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG--~~~~DVFyV 137 (143)
+.|...||+|+|.++.++|.+.|++|....+..++ +...=.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 46789999999999999999999999999998875 333334444
No 43
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.84 E-value=0.0087 Score=37.14 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=37.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEEec
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITK 139 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd-G~~~~DVFyVTD 139 (143)
+.|...|++|+|.++++.|.+.|.+|.+-..... ++.....++.++
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 6788999999999999999999999999998876 444444444444
No 44
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.82 E-value=0.0027 Score=43.60 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=37.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 135 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVF 135 (143)
++.+...||+|++.++++.|.+.|+||....-.+.++.+.=.+
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~ 45 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIM 45 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEE
Confidence 7899999999999999999999999999998888766554333
No 45
>PRK00194 hypothetical protein; Validated
Probab=96.70 E-value=0.0037 Score=42.78 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=35.6
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcce
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH 132 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~ 132 (143)
-++.|...||+|++.++++.|.+.|+||.-..-.+.++.+.
T Consensus 4 ~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~ 44 (90)
T PRK00194 4 AIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFT 44 (90)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeE
Confidence 48899999999999999999999999999877777665443
No 46
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.50 E-value=0.017 Score=34.10 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 129 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~ 129 (143)
++|...|++|.|.++.+.|.+.|++|.+..+...++
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~ 36 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDD 36 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCC
Confidence 467889999999999999999999999999887763
No 47
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.48 E-value=0.022 Score=35.58 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=32.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 129 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~ 129 (143)
.+.|...|++|.|.++.+.|.+.|.+|.+.....+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~ 38 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIERE 38 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCC
Confidence 4678899999999999999999999999988877643
No 48
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.47 E-value=0.015 Score=36.31 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=38.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC-CcceEEEEEec
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 139 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG-~~~~DVFyVTD 139 (143)
++|.-.||+|.|-++.++|.+.|.||...++...+ +..+-.|-+-|
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999988755 66676666544
No 49
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.021 Score=35.44 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL 126 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~IST 126 (143)
+.+...||+|.|.++.+.|.+.|.+|.......
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 467889999999999999999999999888776
No 50
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0097 Score=57.90 Aligned_cols=66 Identities=24% Similarity=0.343 Sum_probs=60.3
Q ss_pred cCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc-ceEEEEEeccc
Q 032291 76 IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG-KHNKFAITKAY 141 (143)
Q Consensus 76 ~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~-~~DVFyVTD~d 141 (143)
...|-|.+-+......|=|-|.+.|+|.++-.++.++...|++|..|.|.|--+. .+|+|+|+|.+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~ 735 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD 735 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC
Confidence 4567788888888899999999999999999999999999999999999997776 89999999765
No 51
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.35 E-value=0.022 Score=37.06 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=36.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 137 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyV 137 (143)
-+.|.-.|++|.|.+++++|.+-|+||..-++...++. -+|.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl 45 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL 45 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence 36778899999999999999999999999999887663 34443
No 52
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.29 E-value=0.014 Score=36.43 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=32.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
++.|.-.||+|.|.++.++|.+.|.||...+....+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 467888999999999999999999999988876654
No 53
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.09 E-value=0.032 Score=36.12 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=30.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
++|...||+|+|.++.++|++.|.+|..-..+++
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~ 36 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP 36 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 6789999999999999999999999998876554
No 54
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.86 E-value=0.011 Score=47.67 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=43.0
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032291 88 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 137 (143)
Q Consensus 88 s~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyV 137 (143)
..+.-||.|...||+|+...++++|.+.|+||.-...+.-|+.|.=.+-|
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv 54 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL 54 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE
Confidence 45778999999999999999999999999999999998888877444433
No 55
>PRK08577 hypothetical protein; Provisional
Probab=95.66 E-value=0.13 Score=38.33 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 88 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 88 s~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
.....-+.|...||+|+|.+++++|.+.|.+|..-...+..
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 33477899999999999999999999999999988777754
No 56
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.65 E-value=0.023 Score=45.82 Aligned_cols=45 Identities=7% Similarity=0.074 Sum_probs=36.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC--cceEEEE
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFA 136 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~--~~~DVFy 136 (143)
=.|+|...||||++++++++|.+.|+||..=.=.+.+. +--+.|.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~ 142 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLH 142 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEE
Confidence 36899999999999999999999999998776666664 3344443
No 57
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.51 E-value=0.067 Score=34.40 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=30.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
+.|.-.||+|.|.++.+.|.+.|++|...+....
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 5678889999999999999999999998887764
No 58
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.41 E-value=0.084 Score=34.62 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=29.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
+.|.-.||||.|.++++.|.+.|.||..-.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4677899999999999999999999987766654
No 59
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.26 E-value=0.15 Score=34.26 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=33.8
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEE
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAI 137 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~-~~~DVFyV 137 (143)
|-+.+.-.|++|.|.++.+.|++.|+||.+-.....++ ...=.|||
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~v 48 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFI 48 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEE
Confidence 34566778999999999999999999998775544332 22335666
No 60
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.81 E-value=0.095 Score=44.23 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=35.6
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe--CCC
Q 032291 90 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL--DSS 129 (143)
Q Consensus 90 ~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST--dG~ 129 (143)
..-+|.|...||+|+..+++++|.++|+||....-.+ .++
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g 46 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG 46 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC
Confidence 3457899999999999999999999999999999888 444
No 61
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=94.57 E-value=0.11 Score=33.12 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=32.9
Q ss_pred EEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC--CCcceEEEEE
Q 032291 95 EITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKFAI 137 (143)
Q Consensus 95 eV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd--G~~~~DVFyV 137 (143)
-|...|++|.|.++.+.|.+.|++|..-+.... ++...=+|.+
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 457899999999999999999999988877553 3444334433
No 62
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.47 E-value=0.31 Score=31.24 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=31.2
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
+-+.|.-.|++|.|..+.+.|.+.|.+|.+.+..-.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~ 37 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS 37 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence 346788899999999999999999999998876544
No 63
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=94.36 E-value=0.032 Score=35.48 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=30.2
Q ss_pred EEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032291 96 ITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 130 (143)
Q Consensus 96 V~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~ 130 (143)
+...||+|+|.+++++|.+.|.+|.+.+..++++.
T Consensus 4 ~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~ 38 (69)
T cd04901 4 HIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEI 38 (69)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCE
Confidence 57899999999999999999999988877766543
No 64
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=94.21 E-value=0.069 Score=39.55 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=28.1
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVK 121 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~K 121 (143)
-||.|...||+|+-..+..+|.++|.||.-
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIld 33 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILD 33 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEE
Confidence 589999999999999999999999999974
No 65
>PRK07334 threonine dehydratase; Provisional
Probab=93.73 E-value=0.22 Score=43.16 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=33.8
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
+-++|...||+|+|.+|+++|++.+.+|......++
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 679999999999999999999999999999998865
No 66
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=93.38 E-value=0.16 Score=34.31 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=25.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEE
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
+-+.-.|++|.|+++.+.|++.|+|+.+=
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~I 31 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHI 31 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEE
Confidence 44555889999999999999999999864
No 67
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.26 E-value=0.19 Score=42.83 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=31.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
-|+.|...||+|+...+++.|.+.|+||.-..=.
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 4899999999999999999999999999987664
No 68
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=93.17 E-value=0.26 Score=41.80 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=31.0
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
-++.|...||+|+..++++.|.++|+||....-.
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~ 41 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF 41 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence 4689999999999999999999999999987665
No 69
>PRK04435 hypothetical protein; Provisional
Probab=93.10 E-value=0.46 Score=36.49 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=41.2
Q ss_pred EEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 81 VIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 81 V~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
.-++.....+-.-+.+...||+|+|.++.++|.+.|.||..-..+...
T Consensus 59 f~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~ 106 (147)
T PRK04435 59 FPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPL 106 (147)
T ss_pred ECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCC
Confidence 346667888889999999999999999999999999999887765543
No 70
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=92.88 E-value=0.6 Score=36.82 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=32.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
++.|...|++|.|.+++..|++.|+||..-.+.-.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~ 38 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTE 38 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecC
Confidence 578899999999999999999999999887777655
No 71
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.76 E-value=0.25 Score=46.89 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=36.8
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032291 90 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 130 (143)
Q Consensus 90 ~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~ 130 (143)
.-+-++|...||.|+|.+|+++|.+.|.||......++.+.
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~ 665 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGR 665 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCC
Confidence 45678999999999999999999999999999998887643
No 72
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=92.53 E-value=0.34 Score=41.01 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
|+.|...||+|+...+++.|.+.|+||.-..-..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~ 36 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD 36 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc
Confidence 68899999999999999999999999998887664
No 73
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.42 E-value=0.37 Score=34.61 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=37.1
Q ss_pred cCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEE
Q 032291 84 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 137 (143)
Q Consensus 84 DNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd-G~~~~DVFyV 137 (143)
++......|-+-+.-.|++|.|+++.+.|++.|+|+.+=.=--- +....=.|||
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV 61 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI 61 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE
Confidence 44444455677777799999999999999999999987533221 1222345666
No 74
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=91.96 E-value=0.79 Score=44.19 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=35.6
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 90 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 90 ~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
.-+-++|.+.||+|+|.+|+++|.+.+.||....+.++.
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~ 703 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDT 703 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 456789999999999999999999999999999998864
No 75
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=91.85 E-value=0.63 Score=37.38 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=31.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 126 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST 126 (143)
++.|...||||+|..++..|...|+||..=.+..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 5889999999999999999999999999988865
No 76
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=91.50 E-value=0.18 Score=41.38 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=27.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVK 121 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~K 121 (143)
-.|+|.+.||+|++-++++.|..+|.+|..
T Consensus 93 v~v~v~a~DrpgIv~~~T~lf~~~~inie~ 122 (176)
T COG2716 93 VWVYVDANDRPGIVEEFTALFDGHGINIEN 122 (176)
T ss_pred EEEEEEecCCccHHHHHHHHHHhcCCchhh
Confidence 468999999999999999999999999863
No 77
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=91.21 E-value=1.5 Score=28.83 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=24.1
Q ss_pred EEeCCcccHHHHHHHHHHhcCceEEEE
Q 032291 96 ITFGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 96 V~s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
+.-.|++|.|.++.++|++.|+||.+-
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I 30 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKI 30 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEE
Confidence 344689999999999999999999887
No 78
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=91.11 E-value=1.2 Score=35.29 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=31.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
++.|...|++|.|.+++..|.+.|.||..-.+.-..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te 39 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTE 39 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecC
Confidence 578899999999999999999999999877766543
No 79
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.71 E-value=0.93 Score=43.64 Aligned_cols=55 Identities=25% Similarity=0.158 Sum_probs=44.2
Q ss_pred EEEcCC-CCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032291 81 VIIDLD-SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 135 (143)
Q Consensus 81 V~IDNd-ss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVF 135 (143)
|.-|.+ +...-.=++|...||.|+|-+++++|.+.+.||.+....++.+.+.+..
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~ 671 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQ 671 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEE
Confidence 444444 3456677899999999999999999999999999999998866555443
No 80
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=90.48 E-value=1 Score=42.55 Aligned_cols=43 Identities=21% Similarity=0.130 Sum_probs=37.6
Q ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032291 89 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 131 (143)
Q Consensus 89 ~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~ 131 (143)
..-+-++|...||+|+|.+|+++|.+.|.+|....+.++.+..
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~ 650 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKRE 650 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCE
Confidence 3456789999999999999999999999999999998875433
No 81
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.29 E-value=0.91 Score=40.02 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=37.2
Q ss_pred CceEEEEEeC-CcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032291 90 DATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 137 (143)
Q Consensus 90 ~aTIVeV~s~-DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyV 137 (143)
..+-+-++-. |+||.|+++.+.|.+.|+||.+=.+ .......-.|||
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i 341 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRI 341 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEE
Confidence 4555666665 9999999999999999999999998 444444445887
No 82
>PRK11899 prephenate dehydratase; Provisional
Probab=89.16 E-value=1.9 Score=36.68 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=35.5
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEE
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 137 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd-G~~~~DVFyV 137 (143)
-|-+-+.-.||+|.|+++.++|++.|+|+.|=.=-=. +.-..=.|||
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i 241 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA 241 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE
Confidence 4666677789999999999999999999987543322 3333557887
No 83
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.02 E-value=0.79 Score=31.63 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=30.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe--CCCcceEEEEE
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL--DSSGKHNKFAI 137 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~IST--dG~~~~DVFyV 137 (143)
+-+.-.|++|.|+++.+.|++.|+|+.+=.=-- ...| .=.|||
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~-~y~F~i 47 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSS-EFEIFV 47 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCc-eEEEEE
Confidence 334557999999999999999999998754332 2223 335555
No 84
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=88.81 E-value=1.3 Score=42.18 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=39.6
Q ss_pred EEEEEe-CCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032291 93 IVEITF-GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 138 (143)
Q Consensus 93 IVeV~s-~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVT 138 (143)
.+.|.. +|++|+|..+..+|...|++|+.|.+.++|.+ +..|-|.
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~~-~~~~~v~ 593 (693)
T PRK00227 548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGPW-SAEFDVR 593 (693)
T ss_pred eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCce-EEEEEEe
Confidence 556666 99999999999999999999999999996665 6889875
No 85
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=87.94 E-value=2.7 Score=29.74 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=31.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 126 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST 126 (143)
.+.+...|++|.|..++.+|..-|.||..=.+.-
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~ 37 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNE 37 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecc
Confidence 4688999999999999999999999999888873
No 86
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.79 E-value=2.2 Score=27.96 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=27.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
+.|.-.||||.|..++++|.. |.||..-+-.-.
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 357889999999999999999 999987554443
No 87
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=87.64 E-value=3.1 Score=31.00 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=37.6
Q ss_pred CCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032291 85 LDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 135 (143)
Q Consensus 85 Ndss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVF 135 (143)
|.+....| +.|...|++|+|..|+..|..-|.||..=.+.--++.-.-.+
T Consensus 3 ~~~~~~~t-isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRm 52 (96)
T PRK08178 3 NTTHDNVI-LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRI 52 (96)
T ss_pred CCCCCCEE-EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEE
Confidence 33444455 699999999999999999999999999877765444333333
No 88
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.11 E-value=3.1 Score=24.73 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.4
Q ss_pred eCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 98 FGDRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 98 s~DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
..|++|.+.++.++|.+.|++|..-+..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 4788999999999999999999876654
No 89
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=86.78 E-value=2.7 Score=30.63 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=32.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 129 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~ 129 (143)
++.|...|++|.|..++..|..-|+||..=.+.--.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~ 40 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQ 40 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCC
Confidence 5788999999999999999999999999988865444
No 90
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.84 E-value=4.1 Score=28.00 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=23.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVK 121 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~K 121 (143)
++.|.-.||||-|..+.++|. |-||..
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~ 29 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITE 29 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeE
Confidence 688999999999999999999 555553
No 91
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.67 E-value=2.2 Score=31.92 Aligned_cols=33 Identities=3% Similarity=0.182 Sum_probs=27.7
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 123 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ 123 (143)
-|-+-+.-.|++|.|+++.+.|++.|+|+.+=.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IE 73 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLE 73 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEE
Confidence 355666669999999999999999999998743
No 92
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=85.12 E-value=0.39 Score=39.42 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=43.9
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032291 88 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 137 (143)
Q Consensus 88 s~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyV 137 (143)
.++|=||.+.+.||||+...++++..+-|+|+..++++.-|+.|.=+--|
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li 51 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI 51 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE
Confidence 45788999999999999999999999999999999999999987544333
No 93
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=84.63 E-value=3.1 Score=33.15 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=36.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032291 92 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 135 (143)
Q Consensus 92 TIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVF 135 (143)
-|+-|.-.|+||-|..|..+|.|.|+|+.-.|-...-.++.=.|
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli 113 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLI 113 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEE
Confidence 36788899999999999999999999999988877666543333
No 94
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=83.94 E-value=3.4 Score=25.65 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.3
Q ss_pred eCCcccHHHHHHHHHHhcCceEEEEEE
Q 032291 98 FGDRLGALLDTMNALKNLGLNVVKANV 124 (143)
Q Consensus 98 s~DR~GLLldivqaL~dLgL~I~KA~I 124 (143)
-.|++|.+..+.++|.+.|++|.--+-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 368899999999999999999985543
No 95
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=83.29 E-value=4.3 Score=35.12 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=36.4
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc-ceEEEEE
Q 032291 90 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG-KHNKFAI 137 (143)
Q Consensus 90 ~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~-~~DVFyV 137 (143)
.-|.+-+.-.|+||.|+++..+|...|+|..|=+=---+.. ..=.|||
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i 241 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI 241 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE
Confidence 47888888889999999999999999999987554333332 3445665
No 96
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=83.17 E-value=2.8 Score=27.73 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=29.0
Q ss_pred CCCceEEEEEeC----CcccHHHHHHHHHHhcCceEEEEE
Q 032291 88 DPDATIVEITFG----DRLGALLDTMNALKNLGLNVVKAN 123 (143)
Q Consensus 88 s~~aTIVeV~s~----DR~GLLldivqaL~dLgL~I~KA~ 123 (143)
.++...+.|... |.+|++..+.++|.+-|++|.--.
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 456677788777 799999999999999999996544
No 97
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=81.53 E-value=1.1 Score=31.17 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=26.0
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhcCceEEE
Q 032291 93 IVEITFGD-RLGALLDTMNALKNLGLNVVK 121 (143)
Q Consensus 93 IVeV~s~D-R~GLLldivqaL~dLgL~I~K 121 (143)
||.|-..| +.|++..++++|.+.|+||..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 46788899 999999999999999999863
No 98
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=80.96 E-value=6.2 Score=34.96 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=35.6
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEE
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 137 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS-TdG~~~~DVFyV 137 (143)
-|-+-+...|++|.|+++.+.|.+.|+|+.|=.=- +.+.-+.=.|||
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi 344 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL 344 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE
Confidence 55555777899999999999999999999875433 334445667777
No 99
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=80.65 E-value=8.1 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=31.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 126 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST 126 (143)
.+.+...|++|.|..++.+|..-|.||..=.+.-
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~ 38 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ 38 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee
Confidence 5788999999999999999999999999988876
No 100
>PRK06382 threonine dehydratase; Provisional
Probab=80.55 E-value=7.9 Score=33.74 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 88 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 88 s~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
+.+-+-+.|.-.||+|.|.++++.|.+.|.||.+-...
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 45677899999999999999999999999999876553
No 101
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.04 E-value=0.61 Score=33.88 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=36.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe----CCCcceEEEEEecc
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL----DSSGKHNKFAITKA 140 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~IST----dG~~~~DVFyVTD~ 140 (143)
||++..-||-.+||++-+||.||.-|=+|.|.- |-+|-+=.|...|.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~ 53 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH 53 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC
Confidence 688899999999999999999999999999963 22344444544443
No 102
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=79.80 E-value=7.7 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=25.5
Q ss_pred CcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032291 100 DRLGALLDTMNALKNLGLNVVKANVFLDSS 129 (143)
Q Consensus 100 DR~GLLldivqaL~dLgL~I~KA~ISTdG~ 129 (143)
|++|.|..++.+|..-|.+|..=.+....+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~ 30 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTED 30 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCC
Confidence 789999999999999999999998887333
No 103
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=79.29 E-value=4.3 Score=32.38 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=35.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcce
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH 132 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~ 132 (143)
+.|+..||+|=|..+..+|++.|+||+-=.|.--|+.-+
T Consensus 6 ISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGI 44 (142)
T COG4747 6 ISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGI 44 (142)
T ss_pred EEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcce
Confidence 678999999999999999999999999999988777543
No 104
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=76.81 E-value=4 Score=36.04 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=45.4
Q ss_pred CccCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032291 74 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 135 (143)
Q Consensus 74 ~~~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVF 135 (143)
..+|.|.|.+.- ....+|++- .-.|++|.+-.|++.|.+.|+||..=++...|+...-+|
T Consensus 323 ~~vn~~~~~~~~-~~~~~rlii-~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii 382 (409)
T PRK11790 323 SAVNFPEVSLPE-HPGGHRLLH-IHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI 382 (409)
T ss_pred cceeccccccCC-CCCCceEEE-EeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE
Confidence 456767666654 224566654 789999999999999999999998888888886554444
No 105
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=76.28 E-value=6.3 Score=22.87 Aligned_cols=33 Identities=24% Similarity=0.155 Sum_probs=24.9
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 93 IVEITFG---DRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 93 IVeV~s~---DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
+|+|... +.+|.+.++.++|.+.|++|.--.-+
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 3444443 48899999999999999999765443
No 106
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=76.24 E-value=5.7 Score=33.46 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=32.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 130 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~ 130 (143)
+.+.+.||+|.|.+++-.+.++|-||.-|.-..+++.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g 41 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDG 41 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccC
Confidence 5678899999999999999999999999877665554
No 107
>PRK06349 homoserine dehydrogenase; Provisional
Probab=75.62 E-value=9.6 Score=33.65 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=38.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 140 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~ 140 (143)
-+.+...|++|.|..+...|.+.|.+|..-.-....+.....++||+.
T Consensus 350 ylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 350 YLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred EEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 577888999999999999999999999966544333356677888863
No 108
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=75.61 E-value=7.2 Score=34.31 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=35.0
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 90 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 90 ~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
...++.|+-.|++|+...|+..|.+.|+||..+.-.+|
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D 43 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDD 43 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccc
Confidence 56899999999999999999999999999999987754
No 109
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=74.39 E-value=14 Score=29.63 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=40.4
Q ss_pred EEEEcC---CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 80 KVIIDL---DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 80 rV~IDN---dss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
.|.||. +..+....+=+.-.||||.+-.+.+.|.+.|+||..-.+.-+.
T Consensus 134 iv~idg~~vd~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~ 185 (208)
T TIGR00719 134 ITEINGFAIEFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKD 185 (208)
T ss_pred EEEECCEEEEecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecC
Confidence 455655 4556666777888999999999999999999999999998753
No 110
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=74.01 E-value=4.6 Score=34.42 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=29.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
-+.|.-.||||.|.++.+.+.+.|.||..-...
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 678899999999999999999999999866443
No 111
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=67.67 E-value=8.4 Score=34.82 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=32.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 128 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG 128 (143)
++|...||.|+-.|+.+.|...++++..-.|+..|
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 68999999999999999999999999988887654
No 112
>PRK11898 prephenate dehydratase; Provisional
Probab=67.12 E-value=13 Score=31.32 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=31.5
Q ss_pred ceEEEEEeC-CcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEE
Q 032291 91 ATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 137 (143)
Q Consensus 91 aTIVeV~s~-DR~GLLldivqaL~dLgL~I~KA~IST-dG~~~~DVFyV 137 (143)
-|-+-+.-. ||+|.|+++.+.|++.|+|+.|=.=-- .++...=.|||
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v 244 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI 244 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE
Confidence 455556654 469999999999999999998743322 12222345666
No 113
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.60 E-value=32 Score=21.42 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=26.4
Q ss_pred eEEEEEeC---CcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 92 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 92 TIVeV~s~---DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
++|.|... +++|.+.++.++|.+.|++|.--.-+
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~ 38 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQG 38 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEec
Confidence 35555554 68999999999999999999765443
No 114
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=64.03 E-value=14 Score=34.38 Aligned_cols=39 Identities=10% Similarity=0.269 Sum_probs=31.9
Q ss_pred cCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEE
Q 032291 84 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 84 DNdss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
|.......|-+-++-.|++|.|.++.++|++.|+|+.+=
T Consensus 24 ~~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThI 62 (464)
T TIGR01270 24 DEEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHL 62 (464)
T ss_pred ccCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEE
Confidence 444555567777777999999999999999999999864
No 115
>PRK08198 threonine dehydratase; Provisional
Probab=63.95 E-value=13 Score=31.96 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=33.3
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 88 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 88 s~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
..+..-+.|.-.||||.|..+.+.|.+.|.||..-...
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 45556889999999999999999999999999877665
No 116
>PLN02317 arogenate dehydratase
Probab=61.46 E-value=36 Score=30.75 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=29.2
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 123 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ 123 (143)
-|-+-+.-.|++|.|+.+.++|++.|+|+.|=.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIE 315 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIE 315 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 477777778999999999999999999998754
No 117
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=61.23 E-value=19 Score=22.21 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=25.5
Q ss_pred eEEEEEe---CCcccHHHHHHHHHHhcCceEEEEE
Q 032291 92 TIVEITF---GDRLGALLDTMNALKNLGLNVVKAN 123 (143)
Q Consensus 92 TIVeV~s---~DR~GLLldivqaL~dLgL~I~KA~ 123 (143)
++|.|.. .+.+|++.++.++|.+.|++|.--.
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~ 36 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIA 36 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 3455554 4789999999999999999997553
No 118
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=61.08 E-value=17 Score=29.75 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=29.2
Q ss_pred CceEEEEEe--CCcccHHHHHHHHHHhcCceEEEEEE
Q 032291 90 DATIVEITF--GDRLGALLDTMNALKNLGLNVVKANV 124 (143)
Q Consensus 90 ~aTIVeV~s--~DR~GLLldivqaL~dLgL~I~KA~I 124 (143)
..-|+++.. ++.+|+|..+.+.|.+.|++|+-+..
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 445677665 77899999999999999999998754
No 119
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=59.12 E-value=19 Score=33.16 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=28.0
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEE
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
-|-+-++-.|++|.|.++.++|++.|+|+.+=
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthI 47 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHI 47 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEE
Confidence 36677777999999999999999999999863
No 120
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=58.31 E-value=21 Score=21.10 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCcccHHHHHHHHHHhcCceEEEEEE
Q 032291 99 GDRLGALLDTMNALKNLGLNVVKANV 124 (143)
Q Consensus 99 ~DR~GLLldivqaL~dLgL~I~KA~I 124 (143)
.+++|++.++.+.|.+.|.++.--.-
T Consensus 11 ~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 11 RGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 37899999999999999999865433
No 121
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=57.77 E-value=23 Score=22.12 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.5
Q ss_pred CCcccHHHHHHHHHHhcCceEEEE
Q 032291 99 GDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 99 ~DR~GLLldivqaL~dLgL~I~KA 122 (143)
.+++|...++.++|.+.|+++.--
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i 34 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI 34 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE
Confidence 477899999999999999999865
No 122
>PRK06545 prephenate dehydrogenase; Validated
Probab=57.12 E-value=18 Score=30.87 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=34.2
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032291 88 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 126 (143)
Q Consensus 88 s~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST 126 (143)
-+.+.-+-|+-.||||.|..+.+.|.+.|+||+.-.|.-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 356777888899999999999999999999999888844
No 123
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.58 E-value=34 Score=20.98 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=25.9
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 93 IVEITFG---DRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 93 IVeV~s~---DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
+|.|... +++|++.++.+.|.+.|++|.--..+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~ 38 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQG 38 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4555543 77899999999999999999766543
No 124
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=51.20 E-value=59 Score=21.46 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032291 101 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 140 (143)
Q Consensus 101 R~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~ 140 (143)
.+|-||.+.+-|.+.|+.-..-... .++..-..|.||+.
T Consensus 30 ~~g~lY~~L~~Le~~gli~~~~~~~-~~~~~rk~Y~iT~~ 68 (75)
T PF03551_consen 30 SPGSLYPALKRLEEEGLIESRWEEE-GNGRPRKYYRITEK 68 (75)
T ss_dssp THHHHHHHHHHHHHTTSEEEEEEEE-TTSSEEEEEEESHH
T ss_pred ChhHHHHHHHHHHhCCCEEEeeecc-CCCCCCEEEEECHH
Confidence 4899999999999999987777766 66666778888874
No 125
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=48.93 E-value=71 Score=20.63 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=26.3
Q ss_pred eEEEEE---eCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 92 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 92 TIVeV~---s~DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
++|+|. -.+++|++.++.++|.+.|+++.--.-+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 456663 3478999999999999999999755443
No 126
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.44 E-value=35 Score=23.24 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=25.2
Q ss_pred eEEEEE---eCCcccHHHHHHHHHHhcCceEEEE
Q 032291 92 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 92 TIVeV~---s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
+.|.|. -.+++|.+..+.++|.+.|++|.-=
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 345552 4678999999999999999999865
No 127
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=47.75 E-value=40 Score=21.56 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.5
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhcCceEE
Q 032291 93 IVEITFG---DRLGALLDTMNALKNLGLNVV 120 (143)
Q Consensus 93 IVeV~s~---DR~GLLldivqaL~dLgL~I~ 120 (143)
+|.|... +++|++..+.++|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4555553 789999999999999999995
No 128
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=41.88 E-value=29 Score=28.05 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=25.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVK 121 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~K 121 (143)
-+.+.-.||.|.|.++.+++.+.++||-.
T Consensus 74 TL~l~ledr~G~LS~vLd~iA~~~~nvLT 102 (150)
T COG4492 74 TLSLSLEDRVGILSDVLDVIAREEINVLT 102 (150)
T ss_pred EEEEEEhhhhhhHHHHHHHHHHhCCcEEE
Confidence 35678899999999999999999999854
No 129
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=40.94 E-value=31 Score=32.42 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=31.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 129 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~ 129 (143)
++|+..||.||..|+...|-.-|+++....|.--|.
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEid~~~~ 38 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceeecCCCe
Confidence 689999999999999999999999999988854443
No 130
>PRK08526 threonine dehydratase; Provisional
Probab=40.66 E-value=47 Score=29.35 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=32.1
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEE
Q 032291 88 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 124 (143)
Q Consensus 88 s~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~I 124 (143)
+.+.--+.|.-.||||.|.++.+.+.+.|.||..-+-
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence 4566778899999999999999999999999986544
No 131
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.65 E-value=36 Score=23.08 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.3
Q ss_pred eCCcccHHHHHHHHHHhcCceEEEE
Q 032291 98 FGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 98 s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
-.+.+|.+..+.++|.+.|++|.-=
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI 35 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLV 35 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 4578999999999999999999865
No 132
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=37.87 E-value=52 Score=27.11 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=29.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032291 94 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 127 (143)
Q Consensus 94 VeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTd 127 (143)
++|.-.||||.|+-+.|=|...|-||..--=+-+
T Consensus 8 ldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~ 41 (170)
T COG2061 8 LDIELKDKPGQLLKVLQPLSKTGANIITIIHSRD 41 (170)
T ss_pred EEEEecCCCcchhhhhcchhhcCccEEEEEeecC
Confidence 4678899999999999999999999987655555
No 133
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=37.44 E-value=70 Score=21.18 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.4
Q ss_pred eEEEEE---eCCcccHHHHHHHHHHhcCceEEEE
Q 032291 92 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 92 TIVeV~---s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
++|.|. -.+.+|.+..+.++|.+.|++|.--
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 455553 3577999999999999999999543
No 134
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=36.56 E-value=67 Score=21.81 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCCcceE
Q 032291 105 LLDTMNALKNLGLNVVKANVFLDSSGKHN 133 (143)
Q Consensus 105 LldivqaL~dLgL~I~KA~ISTdG~~~~D 133 (143)
.-++.+.|.+.|..|.+-++..+|.|-++
T Consensus 31 ~~~~~~~l~~~G~~v~~ve~~~~g~yev~ 59 (83)
T PF13670_consen 31 IEQAVAKLEAQGYQVREVEFDDDGCYEVE 59 (83)
T ss_pred HHHHHHHHHhcCCceEEEEEcCCCEEEEE
Confidence 67889999999999999999778777555
No 135
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.29 E-value=1e+02 Score=18.82 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=25.8
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 93 IVEITF---GDRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 93 IVeV~s---~DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
+|.+.. .+++|++..+.+.|.+.|+++.--..+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 444444 368999999999999999999776543
No 136
>PRK06635 aspartate kinase; Reviewed
Probab=35.50 E-value=64 Score=27.73 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=28.6
Q ss_pred CCceEEEEEe---CCcccHHHHHHHHHHhcCceEEEE
Q 032291 89 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 89 ~~aTIVeV~s---~DR~GLLldivqaL~dLgL~I~KA 122 (143)
++.+++.|.. .+++|.+.++.++|.+.|++|.--
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 3566788865 689999999999999999999764
No 137
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.82 E-value=49 Score=19.89 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCcccHHHHHHHHHHhcCceEEEEE
Q 032291 99 GDRLGALLDTMNALKNLGLNVVKAN 123 (143)
Q Consensus 99 ~DR~GLLldivqaL~dLgL~I~KA~ 123 (143)
.+.+|++.++.+.|.+.|+++..-.
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 11 RSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEE
Confidence 4678999999999999999996654
No 138
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=34.34 E-value=74 Score=29.04 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032291 87 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 126 (143)
Q Consensus 87 ss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~IST 126 (143)
..+....+=+...|+||.+..+.+.|.+.|+||..-.++-
T Consensus 448 ~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r 487 (526)
T PRK13581 448 AKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGR 487 (526)
T ss_pred eeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEecc
Confidence 3445555556669999999999999999999998877765
No 139
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=33.72 E-value=70 Score=28.14 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=29.0
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032291 88 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 123 (143)
Q Consensus 88 s~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ 123 (143)
+.+.-.+.|...||||.|.++.+.+...+-||..-.
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~ 357 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFE 357 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 456678899999999999999996666666887433
No 140
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=32.66 E-value=1.5e+02 Score=19.58 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=30.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.+-+...| +-+..+.|+.+|.++.+.-.... +....||+.|.+
T Consensus 64 ~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~~DPd 106 (114)
T cd07247 64 LVYFAVDD----VDAAAARVEAAGGKVLVPPTDIP--GVGRFAVFADPE 106 (114)
T ss_pred EEEEEeCC----HHHHHHHHHHCCCEEEeCCcccC--CcEEEEEEECCC
Confidence 34444555 67788899999999987754433 333689999976
No 141
>PRK06635 aspartate kinase; Reviewed
Probab=32.46 E-value=1.1e+02 Score=26.26 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=26.9
Q ss_pred ceEEEEE-eCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032291 91 ATIVEIT-FGDRLGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 91 aTIVeV~-s~DR~GLLldivqaL~dLgL~I~KA~IS 125 (143)
..+|.|. -.+++|.|..+.++|.+.|++|.--.-+
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s 297 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQN 297 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 3444443 4678999999999999999999965443
No 142
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=32.41 E-value=1e+02 Score=26.49 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=27.3
Q ss_pred CCceEEEEEeC---CcccHHHHHHHHHHhcCceEEE
Q 032291 89 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVK 121 (143)
Q Consensus 89 ~~aTIVeV~s~---DR~GLLldivqaL~dLgL~I~K 121 (143)
++.++|.|-.. +++|++..+.++|.+.|++|..
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 45566666664 7999999999999999999983
No 143
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.61 E-value=58 Score=22.67 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.4
Q ss_pred EEeCCcccHHHHHHHHHHhcCceEEEE
Q 032291 96 ITFGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 96 V~s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
..-.+.+|.+.++.++|.+.|++|.--
T Consensus 9 ~~~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 9 TRMLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCCCccCHHHHHHHHHHHcCCcEEEE
Confidence 334688999999999999999999875
No 144
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=29.49 E-value=77 Score=18.99 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCcccHHHHHHHHHHhcCceEEEEE
Q 032291 99 GDRLGALLDTMNALKNLGLNVVKAN 123 (143)
Q Consensus 99 ~DR~GLLldivqaL~dLgL~I~KA~ 123 (143)
.+.+|++.++.+.|.+.|+++..-.
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 4678999999999999999996654
No 145
>PRK08639 threonine dehydratase; Validated
Probab=29.14 E-value=1e+02 Score=27.13 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=27.5
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEE
Q 032291 88 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 88 s~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
+.+.--+.|...||||.|.++.+.+...+-||..-
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~ 367 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRF 367 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 45667789999999999999999555555477754
No 146
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.77 E-value=2.1e+02 Score=19.79 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=24.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEE
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVVKANV 124 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~KA~I 124 (143)
++.|....|||.|..-.+.|.. +-+|+.=.=
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~Y 33 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHY 33 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEE
Confidence 5789999999999999998853 566665333
No 147
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=27.19 E-value=76 Score=22.55 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=20.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEE
Q 032291 93 IVEITFGDRLGALLDTMNALKNLGLNVV 120 (143)
Q Consensus 93 IVeV~s~DR~GLLldivqaL~dLgL~I~ 120 (143)
++.|...||.+++ ++++.|.++|+.|-
T Consensus 4 lisv~~~dk~~~~-~~a~~l~~~G~~i~ 30 (116)
T cd01423 4 LISIGSYSKPELL-PTAQKLSKLGYKLY 30 (116)
T ss_pred EEecCcccchhHH-HHHHHHHHCCCEEE
Confidence 4566667887665 88888988988873
No 148
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=26.93 E-value=52 Score=22.33 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCceEE
Q 032291 104 ALLDTMNALKNLGLNVV 120 (143)
Q Consensus 104 LLldivqaL~dLgL~I~ 120 (143)
=||||+.+|..+|+--.
T Consensus 45 RlYDI~NVLealgli~K 61 (71)
T PF02319_consen 45 RLYDIINVLEALGLIEK 61 (71)
T ss_dssp HHHHHHHHHHHCTSEEE
T ss_pred hhhHHHHHHHHhCceee
Confidence 38999999999998544
No 149
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.69 E-value=1.5e+02 Score=19.08 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecccC
Q 032291 105 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAYV 142 (143)
Q Consensus 105 LldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d~ 142 (143)
+-++.+.|.+.|..+.+.- .+..+ ...||+.|.+-
T Consensus 78 i~~~~~~l~~~g~~~~~~~--~~~~~-~~~~~~~DP~G 112 (119)
T cd07263 78 IDATYEELKARGVEFSEEP--REMPY-GTVAVFRDPDG 112 (119)
T ss_pred HHHHHHHHHhCCCEEeecc--ccCCC-ceEEEEECCCC
Confidence 7889999999999888755 23333 46899999763
No 150
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=25.97 E-value=1.4e+02 Score=19.61 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 103 GALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 103 GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
--+.++.+.|++.|+.+..... ...+....||+.|.+
T Consensus 69 ~~v~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~DP~ 105 (117)
T cd07240 69 EDLEALAAHLEAAGVAPEEASD--PEPGVGRGLRFQDPD 105 (117)
T ss_pred HHHHHHHHHHHHcCCceEEcCc--cCCCCceEEEEECCC
Confidence 3567788889999998866433 333445788999876
No 151
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.92 E-value=2e+02 Score=18.80 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCC-CcceEEEEEeccc
Q 032291 105 LLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITKAY 141 (143)
Q Consensus 105 LldivqaL~dLgL~I~KA~ISTdG-~~~~DVFyVTD~d 141 (143)
+-++.+.|.+.|+.+..+-....| .+....||+.|.+
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPd 116 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPD 116 (125)
T ss_pred HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCC
Confidence 777889999999998766554333 3445789999986
No 152
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=25.35 E-value=1.4e+02 Score=21.26 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=25.5
Q ss_pred HHHHHHHhcCceEEEEEEEeCCCcc--eEEEEE
Q 032291 107 DTMNALKNLGLNVVKANVFLDSSGK--HNKFAI 137 (143)
Q Consensus 107 divqaL~dLgL~I~KA~ISTdG~~~--~DVFyV 137 (143)
+|.+.|+++|+.+..++--..++|. ++-|+|
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~v 35 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEV 35 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEE
Confidence 6889999999999999887766644 777776
No 153
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.31 E-value=2e+02 Score=18.62 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 103 GALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 103 GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
--+-++.+.|.++|..+...-..... -+-.||+.|.+
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~DPd 101 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRDDPW--GQRSFYFIDPD 101 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEEETT--SEEEEEEE-TT
T ss_pred cCHHHHHHHHHHCCCeEeeCCEEcCC--CeEEEEEECCC
Confidence 34677788999999998876665444 35689999976
No 154
>PRK09224 threonine dehydratase; Reviewed
Probab=25.15 E-value=2.7e+02 Score=25.38 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032291 89 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 135 (143)
Q Consensus 89 ~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVF 135 (143)
.+--.+.|...||||.|.+..+.|. +-||..-+-.-.+.....+|
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~ 370 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIF 370 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEE
Confidence 3566899999999999999999999 56666543333333334444
No 155
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.35 E-value=1.7e+02 Score=19.41 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHhcCceEEEEEEEeC-C-CcceEEEEEeccc
Q 032291 103 GALLDTMNALKNLGLNVVKANVFLD-S-SGKHNKFAITKAY 141 (143)
Q Consensus 103 GLLldivqaL~dLgL~I~KA~ISTd-G-~~~~DVFyVTD~d 141 (143)
.-|-++.+-|++.|+.+...-.... | .+....||+.|.+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPd 116 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPS 116 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCC
Confidence 4688999999999999886544322 1 2345779999976
No 156
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=23.57 E-value=2.7e+02 Score=29.76 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc-----ceEEEEEeccc
Q 032291 86 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG-----KHNKFAITKAY 141 (143)
Q Consensus 86 dss~~aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~-----~~DVFyVTD~d 141 (143)
+..+...-++++...++..|.+++.+|.+|||.|...+=..-... .+..|++...+
T Consensus 484 ~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~ 544 (1528)
T PF05088_consen 484 GAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPD 544 (1528)
T ss_pred CCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCC
No 157
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=22.98 E-value=1.4e+02 Score=25.82 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=47.8
Q ss_pred ccCCCEEEEcCCCCCCceEEEEEeCCcc-------cHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEec
Q 032291 75 TIPTPKVIIDLDSDPDATIVEITFGDRL-------GALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 139 (143)
Q Consensus 75 ~~~~PrV~IDNdss~~aTIVeV~s~DR~-------GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD 139 (143)
.++.--|+|-+.++++..+..+.+.+.. .||..+.++=+++|+.++.+.+-+ .|.||=.|
T Consensus 98 ~v~l~DvVia~~A~tds~~~~~~f~~~df~~~ad~~Ll~~a~~~A~e~gi~~hvgnv~s-----sD~FY~~~ 164 (236)
T COG0813 98 DVKLRDVVIAQGASTDSNVNRIRFKPHDFAPIADFELLEKAYETAKELGIDTHVGNVFS-----SDLFYNPD 164 (236)
T ss_pred CcccceEEEeccccCcchhhhcccCcccccccCCHHHHHHHHHHHHHhCCceeeeeeee-----eecccCCC
Confidence 3445558888888888888877776654 789999999999999999988863 68898654
No 158
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=22.06 E-value=2.2e+02 Score=20.06 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032291 101 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 140 (143)
Q Consensus 101 R~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~ 140 (143)
.+|.+|-+.+-|.+-|+....-. ..+++.-.-.|+||+.
T Consensus 38 ~~gtlY~~L~rLe~~GlI~~~~~-~~~~~~~rk~y~iT~~ 76 (100)
T TIGR03433 38 EEGSLYPALHRLERRGWIAAEWG-ESENNRRAKFYRLTAA 76 (100)
T ss_pred CCCcHHHHHHHHHHCCCeEEEee-ecCCCCCceEEEECHH
Confidence 46889999999999998766433 3444555578999975
No 159
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=21.83 E-value=1.6e+02 Score=19.49 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 105 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 105 LldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
+-++.+.|+..|+.+...-.. ..|..-.|||.|.+
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~DP~ 102 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTD--EPWGVRRFFVRDPF 102 (112)
T ss_pred HHHHHHHHHhcCCeEecCCcc--CCCceEEEEEECCC
Confidence 457788899999998764332 33556789999976
No 160
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=21.46 E-value=1.6e+02 Score=25.23 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=28.0
Q ss_pred CCceEEEEE---eCCcccHHHHHHHHHHhcCceEEEE
Q 032291 89 PDATIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 122 (143)
Q Consensus 89 ~~aTIVeV~---s~DR~GLLldivqaL~dLgL~I~KA 122 (143)
++..+|.|. -.+++|.+..+.++|.+.|++|.--
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i 294 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLI 294 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 356677777 5688999999999999999999743
No 161
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.09 E-value=1.8e+02 Score=19.28 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=29.7
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032291 91 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 141 (143)
Q Consensus 91 aTIVeV~s~DR~GLLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVTD~d 141 (143)
.+-+-+...|+.. +-.+.+.+.++|..|...-.....++ .||++|.+
T Consensus 60 ~~~~~~~v~~~~~-~~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPd 106 (114)
T cd07261 60 GSELAFMVDDGAA-VDALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPD 106 (114)
T ss_pred ceEEEEEcCCHHH-HHHHHHHHHHCCCeEecCccccCCcc---EEEEECCC
Confidence 3445555555333 46677788899999876543333232 68999976
No 162
>PRK08210 aspartate kinase I; Reviewed
Probab=20.62 E-value=2.6e+02 Score=24.19 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=30.6
Q ss_pred CCceEEEEEeCCc-ccHHHHHHHHHHhcCceEEEEEEE
Q 032291 89 PDATIVEITFGDR-LGALLDTMNALKNLGLNVVKANVF 125 (143)
Q Consensus 89 ~~aTIVeV~s~DR-~GLLldivqaL~dLgL~I~KA~IS 125 (143)
++-+.++|...+. +|.|..+..+|.+.|++|.--..+
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 4567778876665 999999999999999999987544
No 163
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=20.52 E-value=27 Score=26.37 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCce
Q 032291 105 LLDTMNALKNLGLN 118 (143)
Q Consensus 105 LldivqaL~dLgL~ 118 (143)
-|||+++|++|||.
T Consensus 57 kydIT~~l~~l~l~ 70 (103)
T PF14830_consen 57 KYDITDALKKLGLH 70 (103)
T ss_dssp EEE-HHHHHHCT--
T ss_pred hhhHHHHHHHcCCC
Confidence 47999999999998
No 164
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=20.13 E-value=1.1e+02 Score=22.76 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032291 104 ALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 138 (143)
Q Consensus 104 LLldivqaL~dLgL~I~KA~ISTdG~~~~DVFyVT 138 (143)
-+.|+.++|.++|+.+..-. +|++-.+-+|-.
T Consensus 37 T~Qd~i~aL~~~~I~~~Fvq---~G~R~~~GyY~i 68 (90)
T PF09904_consen 37 TIQDTIKALPELGIECEFVQ---DGERNNAGYYRI 68 (90)
T ss_dssp HHHHHHHGGGGGT-EEEEE-----TTS-S--EEEE
T ss_pred HHHHHHHHhhcCCeEEEEEe---cCccCCCCcEEe
Confidence 47899999999998887655 899888888853
Done!