BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032292
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 186 bits (473), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 118/182 (64%), Gaps = 45/182 (24%)
Query: 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------- 46
+ GQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+
Sbjct: 57 LAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR 116
Query: 47 -------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 81
E+EGS+D+ FVDADK NY YHERLMKL+KVGGI
Sbjct: 117 KAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGI 176
Query: 82 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
YDNTLWGGTVA PE +VPD F +R+A+++LN+ LA DPR+++ H+ LGDGIT CRR
Sbjct: 177 VAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRR 235
Query: 142 IF 143
++
Sbjct: 236 LY 237
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 105/179 (58%), Gaps = 44/179 (24%)
Query: 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+
Sbjct: 68 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA 127
Query: 47 -----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
+N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+
Sbjct: 128 GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG 187
Query: 84 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
YDNTLW G+V P + + R +L+LN++LA DPR+++ + +GDGITICRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 92.4 bits (228), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 83/179 (46%), Gaps = 49/179 (27%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----SENEG----------- 51
Q M ML+RL AKK +E+G FTGYS L +L +P+DGQ NEG
Sbjct: 48 QAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE 107
Query: 52 ----------------------------SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
FD+ F+DADK NY NY+E +KL+ G+
Sbjct: 108 AKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIA 167
Query: 84 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
DN W G V P + G +R+ I LN+ + +D RV +S +A+ DG+ + + I
Sbjct: 168 IDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 78/178 (43%), Gaps = 53/178 (29%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------- 46
Q + +L+ L AK+ +EIGVF GYS L AL +P DGQ
Sbjct: 60 QAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK 119
Query: 47 -----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
+ FD F+DADK NY Y+E + LL+ GG+ V
Sbjct: 120 AGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMV 179
Query: 84 YDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 139
DN LW G V P+E + Q + NR LA D RV++S + LGDG+T+
Sbjct: 180 IDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDLAQDERVRISVIPLGDGMTLA 229
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 83/179 (46%), Gaps = 49/179 (27%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------------------Q 46
QL+A L RL+ AKK +++G FTGYS L AL +P DG Q
Sbjct: 57 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ 116
Query: 47 SENE-----------------------GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
+E E G+FD A VDADK+N Y+ER ++LL+ GGI
Sbjct: 117 AEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILA 176
Query: 84 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
LW G V P + + + + +LN + D RV +S + LGDG+T+ +I
Sbjct: 177 VLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 49/178 (27%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------SEN 49
QL+A+L++L AKK I+IG FTGYS + L +P+DG E
Sbjct: 52 QAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEK 111
Query: 50 EG--------------------------SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
G +D ++DADK N Y+E +KLL+ GG+
Sbjct: 112 AGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIA 171
Query: 84 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
DN L G VA E Q + Q I N+ + D RV + +GDG+T+ R+
Sbjct: 172 VDNVLRRGQVADEENQ------SENNQLIRLFNQKVYKDERVDXILIPIGDGLTLARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 60/189 (31%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE----------------------- 43
GQ + +L ++ AK+ IEIG FTGYS L A +PE
Sbjct: 48 EGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE 107
Query: 44 ----------------------DGQSENEGSFDYAF---------VDADKDNYCNYHERL 72
D +S + D+AF +DADK+NY NY+ +
Sbjct: 108 NGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLI 167
Query: 73 MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL 132
+KLLK GG+ + DN LW G+VA Q P S I N + +D V +S V +
Sbjct: 168 LKLLKPGGLLIADNVLWDGSVADLSHQEP------STVGIRKFNELVYNDSLVDVSLVPI 221
Query: 133 GDGITICRR 141
DG+++ R+
Sbjct: 222 ADGVSLVRK 230
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 40/131 (30%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------SEN--- 49
GQ +A+L+RL AK+ +EIG GYS + A +P DGQ EN
Sbjct: 51 QGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARENLQL 110
Query: 50 ----------EG-------------SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 86
EG +FD F+DADK N +Y ++ + G + + DN
Sbjct: 111 AGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDN 170
Query: 87 TLWGGTVAVPE 97
+ G V P+
Sbjct: 171 VVRDGEVVNPQ 181
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 61/162 (37%), Gaps = 50/162 (30%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------------------- 45
G+ + +L+++ A+ +EIG GYS + A + G
Sbjct: 46 QGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER 105
Query: 46 -------------------QSENEG--SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84
Q ENE FD+ F+DADK N Y E +KL + G + +
Sbjct: 106 ANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIG 165
Query: 85 DNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRSLADDPRV 125
DN V E +V D+ R Q I +A +PRV
Sbjct: 166 DNV-------VREGEVIDNTSNDPRVQGIRRFYELIAAEPRV 200
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI 112
FD F+DA K Y + + ++ GG+ + DN L+ G VA E +H R
Sbjct: 127 FDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLFRGLVA---ETDIEHKRHKQLATK 183
Query: 113 LD-LNRSLADDPRVQLSHVALGDGITIC 139
+D N+ L + P+ +GDGI I
Sbjct: 184 IDTYNQWLLEHPQYDTRIFPVGDGIAIS 211
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 43 EDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPD 102
E ++ N+ +D F+DA K + E LLK G+ + DN L+ G V+
Sbjct: 133 EQFENVNDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSR 192
Query: 103 HFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 139
+ R ++ + D N L P + + + DG+ I
Sbjct: 193 NVRQXVKK-VQDYNEWLIKQPGYTTNFLNIDDGLAIS 228
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTAL-------TIPEDGQSENEGSFDYAFVDAD 61
Q+ A ++R++ +KT+ G++LL++ L P D + E D +++ D
Sbjct: 695 QIDAAIVRIMKMRKTL------GHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERD 748
Query: 62 KDNYCNYH 69
KDN YH
Sbjct: 749 KDNPNQYH 756
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTAL-------TIPEDGQSENEGSFDYAFVDAD 61
Q+ A ++R++ +KT+ G++LL++ L P D + E D +++ D
Sbjct: 678 QIDAAIVRIMKMRKTL------GHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERD 731
Query: 62 KDNYCNYH 69
KDN YH
Sbjct: 732 KDNPNQYH 739
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 109 RQAILDLNRSLADDPRVQLSHV 130
RQA+LDL + DP + +SHV
Sbjct: 101 RQALLDLEQEFLGDPHLSISHV 122
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYC 66
HG L NA T + G + +TAL+I G + + + D +KD Y
Sbjct: 48 HGDASTYAHYLFNAFDTTQTGS-VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYI 106
Query: 67 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVP 101
N E +M ++K A+YD + T V +E P
Sbjct: 107 N-KEEMMDIVK----AIYD-MMGKYTYPVLKEDTP 135
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYC 66
HG L NA T + G + +TAL+I G + + + D +KD Y
Sbjct: 51 HGDASTYAHYLFNAFDTTQTGS-VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYI 109
Query: 67 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVP 101
N E +M ++K A+YD + T V +E P
Sbjct: 110 N-KEEMMDIVK----AIYD-MMGKYTYPVLKEDTP 138
>pdb|3V4E|A Chain A, Crystal Structure Of The Galactoside O-Acetyltransferase
In Complex With Coa
pdb|3V4E|B Chain B, Crystal Structure Of The Galactoside O-Acetyltransferase
In Complex With Coa
pdb|3V4E|C Chain C, Crystal Structure Of The Galactoside O-Acetyltransferase
In Complex With Coa
Length = 202
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 67 NYHERLMKLLKVGGIAVYDNTLWGGTVAV 95
N+H R K G I + NT +GG VAV
Sbjct: 120 NFHHRNEGFEKAGPIHIGSNTWFGGHVAV 148
>pdb|3FTT|A Chain A, Crystal Structure Of The Galactoside O-Acetyltransferase
From Staphylococcus Aureus
Length = 199
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 67 NYHERLMKLLKVGGIAVYDNTLWGGTVAV 95
N+H R K G I + NT +GG VAV
Sbjct: 117 NFHHRNEGFEKAGPIHIGSNTWFGGHVAV 145
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG 45
+M LL L K +EIG GY +TA + EDG
Sbjct: 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDG 103
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYC 66
HG L NA T + G + +TAL+I G + + + D +KD Y
Sbjct: 48 HGDASTYAHYLFNAFDTTQTGS-VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYI 106
Query: 67 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVP 101
N E +M ++K A+YD + T V E P
Sbjct: 107 N-KEEMMDIVK----AIYD-MMGAYTYPVLAEDTP 135
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 45 GQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 79
GQ + S +A VD D DNY Y+ R L +G
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG 74
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYC 66
HG L NA T + G + +TAL+I G + + + D +KD Y
Sbjct: 84 HGDASTYAHYLFNAFDTTQTGS-VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYI 142
Query: 67 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVP 101
N E +M ++K A+YD + T V +E P
Sbjct: 143 N-KEEMMDIVK----AIYD-MMGKYTYPVLKEDTP 171
>pdb|4DCL|A Chain A, Computationally Designed Self-Assembling Tetrahedron
Protein, T308, Crystallized In Space Group F23
Length = 207
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 67 NYHERLMKLLKVGGIAVYDNTLWGGTVAV 95
N+H R K G I + NT +GG VAV
Sbjct: 117 NFHHRNEGFEKAGPIHIGSNTWFGGHVAV 145
>pdb|4EGG|A Chain A, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|B Chain B, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|C Chain C, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|D Chain D, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|E Chain E, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|F Chain F, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
Length = 207
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 67 NYHERLMKLLKVGGIAVYDNTLWGGTVAV 95
N+H R K G I + NT +GG VAV
Sbjct: 117 NFHHRNEGFEKAGPIHIGSNTWFGGHVAV 145
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 82 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 122
A YD V PEE P+ F G +A+ + SL D+
Sbjct: 221 AAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDE 261
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 70 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ--VPDHFRGSSRQAILDLNRSLADDPRV 125
E+ ++ K+ ++D L GG+ +P+ Q + D+F G DLN+S+ D V
Sbjct: 342 EKALRDAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGR------DLNKSINPDEAV 393
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 82 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 122
A YD V PEE P+ F G +A+ + SL D+
Sbjct: 221 AAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDE 261
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 82 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 122
A YD V PEE P+ F G +A+ + SL D+
Sbjct: 221 AAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDE 261
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 45 GQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 79
GQ + S +A VD D DNY Y+ R L G
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXG 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,346,225
Number of Sequences: 62578
Number of extensions: 179348
Number of successful extensions: 417
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 58
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)