Query 032292
Match_columns 143
No_of_seqs 203 out of 1773
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 12:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 100.0 2.2E-37 4.8E-42 228.6 14.4 136 1-142 27-205 (205)
2 PLN02589 caffeoyl-CoA O-methyl 100.0 1.3E-34 2.9E-39 218.9 15.6 142 1-142 61-246 (247)
3 PLN02476 O-methyltransferase 100.0 1E-33 2.3E-38 216.7 16.3 136 1-142 100-278 (278)
4 PLN02781 Probable caffeoyl-CoA 100.0 5E-33 1.1E-37 209.3 16.0 141 1-142 50-233 (234)
5 COG4122 Predicted O-methyltran 100.0 2.9E-33 6.3E-38 207.4 14.3 135 4-142 44-218 (219)
6 KOG1663 O-methyltransferase [S 100.0 4.7E-32 1E-36 199.9 13.9 137 1-142 55-237 (237)
7 PRK13942 protein-L-isoaspartat 99.2 5.2E-11 1.1E-15 88.4 8.9 80 3-85 60-175 (212)
8 PLN03075 nicotianamine synthas 99.2 8.4E-11 1.8E-15 91.2 9.0 83 3-86 108-233 (296)
9 PRK08287 cobalt-precorrin-6Y C 99.2 6.1E-10 1.3E-14 80.9 12.4 78 9-87 21-132 (187)
10 TIGR02469 CbiT precorrin-6Y C5 99.2 2.1E-10 4.4E-15 77.1 9.1 77 8-85 8-121 (124)
11 PF12847 Methyltransf_18: Meth 99.2 5.6E-11 1.2E-15 78.8 5.8 66 19-85 1-110 (112)
12 TIGR00080 pimt protein-L-isoas 99.2 1.9E-10 4.1E-15 85.4 8.7 78 5-85 63-176 (215)
13 COG2518 Pcm Protein-L-isoaspar 99.2 1E-10 2.2E-15 86.3 7.1 79 4-85 57-168 (209)
14 COG2226 UbiE Methylase involve 99.2 2.8E-10 6E-15 85.9 9.3 79 10-89 42-159 (238)
15 PRK13944 protein-L-isoaspartat 99.2 2.6E-10 5.7E-15 84.2 9.0 74 9-85 62-172 (205)
16 PF01209 Ubie_methyltran: ubiE 99.1 1.3E-10 2.9E-15 87.6 7.3 77 11-87 39-154 (233)
17 PRK00107 gidB 16S rRNA methylt 99.1 3.7E-10 8E-15 82.5 9.0 66 18-85 44-144 (187)
18 PF01135 PCMT: Protein-L-isoas 99.1 1.2E-10 2.5E-15 86.5 6.2 79 4-85 57-171 (209)
19 COG4106 Tam Trans-aconitate me 99.1 2.2E-10 4.8E-15 84.7 7.3 69 17-85 28-128 (257)
20 TIGR02752 MenG_heptapren 2-hep 99.1 9.6E-10 2.1E-14 82.0 10.0 73 14-86 40-151 (231)
21 TIGR00138 gidB 16S rRNA methyl 99.1 4.1E-10 8.9E-15 81.8 7.5 66 18-85 41-141 (181)
22 PRK04457 spermidine synthase; 99.1 3.6E-09 7.8E-14 81.0 13.0 75 10-85 57-176 (262)
23 PRK00377 cbiT cobalt-precorrin 99.1 1.2E-09 2.6E-14 80.2 9.7 72 16-87 37-146 (198)
24 COG2242 CobL Precorrin-6B meth 99.1 2E-09 4.2E-14 78.1 10.4 72 16-89 31-138 (187)
25 PLN02233 ubiquinone biosynthes 99.1 1.1E-09 2.4E-14 83.7 9.7 74 15-88 69-184 (261)
26 COG2230 Cfa Cyclopropane fatty 99.1 7.7E-10 1.7E-14 85.1 8.1 82 9-90 62-180 (283)
27 PF07279 DUF1442: Protein of u 99.1 1.9E-09 4.1E-14 79.6 9.7 119 3-140 25-185 (218)
28 COG2519 GCD14 tRNA(1-methylade 99.0 8.2E-10 1.8E-14 83.4 7.7 81 3-85 78-194 (256)
29 PF13578 Methyltransf_24: Meth 99.0 7.5E-11 1.6E-15 78.1 1.3 64 24-87 1-106 (106)
30 PF08241 Methyltransf_11: Meth 99.0 8.5E-10 1.8E-14 70.4 5.8 59 24-84 1-95 (95)
31 PF02353 CMAS: Mycolic acid cy 99.0 7.4E-10 1.6E-14 85.3 6.0 81 10-90 53-170 (273)
32 PRK15068 tRNA mo(5)U34 methylt 99.0 2.4E-09 5.2E-14 84.3 8.2 72 18-90 121-230 (322)
33 PRK01683 trans-aconitate 2-met 99.0 3.5E-09 7.5E-14 80.3 8.8 69 16-85 28-129 (258)
34 PF08704 GCD14: tRNA methyltra 99.0 1.7E-09 3.8E-14 82.1 7.0 80 3-84 24-144 (247)
35 PRK00517 prmA ribosomal protei 99.0 2.8E-08 6E-13 75.5 13.5 82 7-88 106-215 (250)
36 PRK08317 hypothetical protein; 99.0 8.9E-09 1.9E-13 76.2 10.6 83 8-90 8-128 (241)
37 PRK14103 trans-aconitate 2-met 99.0 3.2E-09 6.9E-14 80.7 8.2 67 18-85 28-125 (255)
38 PRK14901 16S rRNA methyltransf 99.0 1.7E-08 3.7E-13 82.3 13.0 121 5-142 238-431 (434)
39 PF13489 Methyltransf_23: Meth 99.0 2.8E-09 6E-14 74.5 7.3 81 8-88 10-117 (161)
40 PRK11873 arsM arsenite S-adeno 99.0 4E-09 8.7E-14 80.7 8.6 76 15-90 73-187 (272)
41 PRK00312 pcm protein-L-isoaspa 99.0 3.4E-09 7.4E-14 78.4 7.9 80 3-85 62-174 (212)
42 PTZ00098 phosphoethanolamine N 99.0 3.6E-09 7.9E-14 81.0 8.2 74 16-89 49-159 (263)
43 PRK07402 precorrin-6B methylas 98.9 1.9E-08 4.2E-13 73.5 11.4 81 5-87 26-143 (196)
44 PLN02244 tocopherol O-methyltr 98.9 4.5E-09 9.9E-14 83.2 8.4 70 18-87 117-224 (340)
45 TIGR00406 prmA ribosomal prote 98.9 8.4E-09 1.8E-13 79.9 9.0 71 18-88 158-261 (288)
46 PRK10258 biotin biosynthesis p 98.9 8.5E-09 1.8E-13 78.0 8.6 69 18-86 41-140 (251)
47 PRK00121 trmB tRNA (guanine-N( 98.9 3.1E-09 6.8E-14 78.3 6.0 81 3-85 26-155 (202)
48 PRK04266 fibrillarin; Provisio 98.9 9.5E-09 2.1E-13 77.2 8.4 77 8-85 59-175 (226)
49 PF05175 MTS: Methyltransferas 98.9 8.6E-09 1.9E-13 73.9 7.4 75 10-84 22-138 (170)
50 PF08003 Methyltransf_9: Prote 98.9 7E-09 1.5E-13 80.4 7.3 81 9-91 106-224 (315)
51 PF13847 Methyltransf_31: Meth 98.9 7.5E-09 1.6E-13 72.6 6.8 71 18-88 2-112 (152)
52 TIGR02072 BioC biotin biosynth 98.9 2.3E-08 4.9E-13 74.2 9.6 69 19-87 34-136 (240)
53 PRK11188 rrmJ 23S rRNA methylt 98.9 1.3E-08 2.8E-13 75.5 8.1 68 18-85 50-164 (209)
54 PRK14902 16S rRNA methyltransf 98.9 7.7E-08 1.7E-12 78.7 13.2 84 4-87 235-380 (444)
55 PRK10901 16S rRNA methyltransf 98.9 7.8E-08 1.7E-12 78.3 13.0 81 5-86 230-372 (427)
56 TIGR00477 tehB tellurite resis 98.8 1.4E-08 3E-13 74.4 7.8 72 13-84 24-131 (195)
57 TIGR00452 methyltransferase, p 98.8 1.2E-08 2.5E-13 80.1 7.8 73 18-90 120-229 (314)
58 PLN02336 phosphoethanolamine N 98.8 2.1E-08 4.6E-13 82.4 9.1 73 17-89 264-372 (475)
59 TIGR00563 rsmB ribosomal RNA s 98.8 1.3E-07 2.8E-12 77.0 13.3 82 5-87 224-369 (426)
60 COG2264 PrmA Ribosomal protein 98.8 1.7E-08 3.7E-13 78.3 7.7 79 8-88 153-265 (300)
61 PRK11036 putative S-adenosyl-L 98.8 1.8E-08 4E-13 76.5 7.5 68 18-85 43-148 (255)
62 PRK14903 16S rRNA methyltransf 98.8 1.2E-07 2.6E-12 77.3 12.8 83 5-87 223-367 (431)
63 TIGR00537 hemK_rel_arch HemK-r 98.8 1.9E-08 4.2E-13 72.5 7.1 78 7-85 7-139 (179)
64 PF06325 PrmA: Ribosomal prote 98.8 1.4E-08 3.1E-13 79.0 6.6 80 10-89 151-262 (295)
65 PRK11207 tellurite resistance 98.8 2.4E-08 5.2E-13 73.3 7.2 68 17-84 28-132 (197)
66 PRK11705 cyclopropane fatty ac 98.8 3.8E-08 8.2E-13 79.2 8.8 74 15-88 163-269 (383)
67 PRK13943 protein-L-isoaspartat 98.8 4.9E-08 1.1E-12 76.9 9.1 69 14-85 75-179 (322)
68 PRK14904 16S rRNA methyltransf 98.8 3E-07 6.6E-12 75.3 13.9 81 7-87 238-378 (445)
69 PRK11088 rrmA 23S rRNA methylt 98.8 2.6E-08 5.6E-13 76.5 7.1 63 19-85 85-180 (272)
70 smart00828 PKS_MT Methyltransf 98.8 2.4E-08 5.2E-13 74.1 6.7 68 21-88 1-106 (224)
71 COG2227 UbiG 2-polyprenyl-3-me 98.7 4.6E-08 1E-12 73.5 7.8 81 10-90 47-165 (243)
72 TIGR00438 rrmJ cell division p 98.7 6.5E-08 1.4E-12 70.3 7.9 75 11-85 24-145 (188)
73 PLN02396 hexaprenyldihydroxybe 98.7 4.5E-08 9.8E-13 77.1 7.5 70 19-88 131-237 (322)
74 PRK00811 spermidine synthase; 98.7 2.5E-07 5.4E-12 71.6 11.4 68 18-85 75-190 (283)
75 PRK12335 tellurite resistance 98.7 6.4E-08 1.4E-12 74.9 7.7 68 17-84 118-221 (287)
76 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 1.7E-07 3.7E-12 68.9 9.4 71 17-87 37-144 (223)
77 TIGR02716 C20_methyl_CrtF C-20 98.7 1.1E-07 2.3E-12 74.1 8.6 77 13-90 143-258 (306)
78 PRK00216 ubiE ubiquinone/menaq 98.7 2.2E-07 4.8E-12 69.0 9.9 70 18-87 50-159 (239)
79 PF08242 Methyltransf_12: Meth 98.7 1.1E-08 2.4E-13 66.6 2.5 59 24-82 1-99 (99)
80 TIGR00740 methyltransferase, p 98.7 2E-07 4.2E-12 70.1 9.5 71 19-89 53-164 (239)
81 TIGR00417 speE spermidine synt 98.7 3.5E-07 7.6E-12 70.2 10.9 68 18-85 71-185 (270)
82 PRK09489 rsmC 16S ribosomal RN 98.7 1.2E-07 2.7E-12 75.2 8.6 75 8-84 186-301 (342)
83 PTZ00146 fibrillarin; Provisio 98.7 1E-07 2.3E-12 73.9 7.8 68 18-85 131-236 (293)
84 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1.6E-07 3.5E-12 71.9 8.8 79 8-86 60-199 (264)
85 PRK15001 SAM-dependent 23S rib 98.7 1.4E-07 3.1E-12 75.7 8.7 65 20-85 229-339 (378)
86 PLN02336 phosphoethanolamine N 98.6 1.8E-07 3.8E-12 76.9 9.2 72 18-89 36-145 (475)
87 PRK15451 tRNA cmo(5)U34 methyl 98.6 1.6E-07 3.6E-12 71.1 8.3 71 18-88 55-166 (247)
88 TIGR03533 L3_gln_methyl protei 98.6 1.5E-07 3.3E-12 72.9 8.2 80 5-85 103-250 (284)
89 TIGR00091 tRNA (guanine-N(7)-) 98.6 2E-07 4.3E-12 68.2 8.1 67 19-85 16-131 (194)
90 PLN02366 spermidine synthase 98.6 4.3E-07 9.4E-12 71.1 10.4 68 18-85 90-205 (308)
91 PRK06922 hypothetical protein; 98.6 1.8E-07 4E-12 79.2 8.8 75 12-87 411-538 (677)
92 PRK01581 speE spermidine synth 98.6 1.7E-07 3.6E-12 74.7 7.7 69 16-85 147-267 (374)
93 PLN02490 MPBQ/MSBQ methyltrans 98.6 2.7E-07 5.8E-12 73.2 8.8 66 19-85 113-214 (340)
94 TIGR03587 Pse_Me-ase pseudamin 98.6 3.5E-07 7.6E-12 67.6 8.9 72 14-88 38-144 (204)
95 COG2813 RsmC 16S RNA G1207 met 98.6 2.7E-07 5.8E-12 71.6 7.9 75 7-83 147-263 (300)
96 TIGR03534 RF_mod_PrmC protein- 98.6 6E-07 1.3E-11 67.4 9.5 80 6-85 72-216 (251)
97 PF03848 TehB: Tellurite resis 98.6 3.6E-07 7.8E-12 67.0 7.6 79 6-85 18-132 (192)
98 PRK05785 hypothetical protein; 98.5 7.7E-07 1.7E-11 66.7 9.3 71 10-80 41-141 (226)
99 COG4123 Predicted O-methyltran 98.5 6E-07 1.3E-11 68.1 8.2 77 7-84 32-168 (248)
100 KOG1661 Protein-L-isoaspartate 98.5 7.4E-07 1.6E-11 65.9 8.0 76 7-85 69-192 (237)
101 PF13659 Methyltransf_26: Meth 98.5 6E-07 1.3E-11 59.8 6.9 65 20-84 1-113 (117)
102 PRK05134 bifunctional 3-demeth 98.5 6.8E-07 1.5E-11 66.7 7.9 82 5-86 34-151 (233)
103 PRK14968 putative methyltransf 98.5 1.2E-06 2.6E-11 62.9 8.9 75 9-84 13-146 (188)
104 PRK14967 putative methyltransf 98.5 1E-06 2.2E-11 65.7 8.7 67 18-84 35-157 (223)
105 PRK11805 N5-glutamine S-adenos 98.5 7E-07 1.5E-11 69.9 8.1 64 21-85 135-262 (307)
106 PF05401 NodS: Nodulation prot 98.5 3.1E-07 6.7E-12 67.3 5.5 113 19-140 43-193 (201)
107 TIGR00536 hemK_fam HemK family 98.5 7.9E-07 1.7E-11 68.7 7.9 79 6-85 97-243 (284)
108 PF06080 DUF938: Protein of un 98.5 2.3E-06 4.9E-11 63.2 9.7 87 7-94 11-150 (204)
109 PRK06202 hypothetical protein; 98.4 7.2E-07 1.6E-11 66.8 7.0 69 18-88 59-168 (232)
110 PRK14121 tRNA (guanine-N(7)-)- 98.4 1.7E-06 3.6E-11 69.7 9.2 66 19-84 122-233 (390)
111 PRK09328 N5-glutamine S-adenos 98.4 9.5E-07 2.1E-11 67.4 7.6 67 18-85 107-237 (275)
112 PF13649 Methyltransf_25: Meth 98.4 1.9E-07 4.1E-12 61.1 3.0 58 23-80 1-101 (101)
113 KOG1270 Methyltransferases [Co 98.4 3.6E-07 7.7E-12 69.5 4.2 69 21-89 91-198 (282)
114 TIGR01177 conserved hypothetic 98.4 2.7E-06 5.9E-11 67.1 9.3 82 3-84 166-292 (329)
115 KOG2899 Predicted methyltransf 98.4 2.9E-06 6.4E-11 64.1 8.6 74 17-90 56-213 (288)
116 PRK15128 23S rRNA m(5)C1962 me 98.4 8.6E-07 1.9E-11 71.7 6.2 70 16-85 217-338 (396)
117 PF04989 CmcI: Cephalosporin h 98.4 5.2E-06 1.1E-10 61.4 9.6 87 4-90 17-151 (206)
118 PRK01544 bifunctional N5-gluta 98.4 1.7E-06 3.6E-11 72.0 7.8 24 20-43 139-162 (506)
119 COG4976 Predicted methyltransf 98.3 2E-06 4.2E-11 64.6 6.9 113 20-142 126-286 (287)
120 TIGR01983 UbiG ubiquinone bios 98.3 4E-06 8.7E-11 62.0 8.6 81 6-86 28-149 (224)
121 KOG2361 Predicted methyltransf 98.3 9.9E-07 2.1E-11 66.4 4.9 70 19-88 71-185 (264)
122 PRK10909 rsmD 16S rRNA m(2)G96 98.3 6.3E-06 1.4E-10 60.8 9.1 76 10-85 44-158 (199)
123 PRK11783 rlmL 23S rRNA m(2)G24 98.3 2.2E-06 4.9E-11 73.8 7.7 73 14-86 533-656 (702)
124 PLN02823 spermine synthase 98.3 3.1E-06 6.8E-11 67.1 7.8 68 18-85 102-219 (336)
125 PRK03612 spermidine synthase; 98.3 2.9E-06 6.3E-11 70.8 7.7 69 17-85 295-414 (521)
126 TIGR03704 PrmC_rel_meth putati 98.2 8E-06 1.7E-10 62.2 8.8 23 20-42 87-109 (251)
127 cd02440 AdoMet_MTases S-adenos 98.2 7.2E-06 1.6E-10 51.7 6.9 64 22-85 1-103 (107)
128 smart00138 MeTrc Methyltransfe 98.2 4.8E-06 1.1E-10 63.8 7.1 36 50-85 201-241 (264)
129 PRK14966 unknown domain/N5-glu 98.2 1.4E-05 3E-10 64.9 9.2 38 5-42 236-274 (423)
130 PF03141 Methyltransf_29: Puta 98.1 3.6E-06 7.8E-11 69.1 5.4 68 20-87 118-220 (506)
131 PF02527 GidB: rRNA small subu 98.1 6.4E-06 1.4E-10 60.1 5.6 62 22-84 51-146 (184)
132 COG2890 HemK Methylase of poly 98.1 1.9E-05 4.1E-10 61.1 8.5 81 5-85 94-237 (280)
133 PF10294 Methyltransf_16: Puta 98.1 8.3E-06 1.8E-10 58.8 6.1 68 17-84 43-154 (173)
134 KOG4300 Predicted methyltransf 98.1 4.8E-06 1E-10 61.6 4.6 37 48-84 141-180 (252)
135 TIGR03438 probable methyltrans 98.1 2.8E-05 6.2E-10 60.6 9.1 24 19-42 63-86 (301)
136 TIGR03840 TMPT_Se_Te thiopurin 98.1 1.5E-05 3.3E-10 59.3 7.1 67 19-85 34-151 (213)
137 PF07021 MetW: Methionine bios 98.1 1.1E-05 2.3E-10 59.1 6.1 100 18-120 12-156 (193)
138 PF05711 TylF: Macrocin-O-meth 98.1 1.9E-05 4E-10 60.1 7.2 64 50-133 175-239 (248)
139 KOG1540 Ubiquinone biosynthesi 98.0 2.3E-05 4.9E-10 59.7 7.5 66 19-84 100-212 (296)
140 PRK07580 Mg-protoporphyrin IX 98.0 3E-05 6.6E-10 57.5 8.2 24 18-41 62-85 (230)
141 COG0421 SpeE Spermidine syntha 98.0 7.8E-05 1.7E-09 57.8 10.5 68 18-85 75-189 (282)
142 smart00650 rADc Ribosomal RNA 98.0 4.1E-05 9E-10 54.6 8.4 72 16-87 10-114 (169)
143 TIGR02021 BchM-ChlM magnesium 98.0 3.5E-05 7.7E-10 57.1 7.8 69 17-85 53-157 (219)
144 KOG2915 tRNA(1-methyladenosine 98.0 3.1E-05 6.7E-10 59.5 7.1 75 8-84 94-207 (314)
145 PF05148 Methyltransf_8: Hypot 98.0 1.6E-05 3.6E-10 58.9 5.3 101 9-128 62-181 (219)
146 COG0357 GidB Predicted S-adeno 98.0 4.6E-05 9.9E-10 56.9 7.7 64 20-84 68-166 (215)
147 TIGR02081 metW methionine bios 98.0 2.5E-05 5.4E-10 57.0 6.2 61 18-78 12-104 (194)
148 PRK13255 thiopurine S-methyltr 97.9 4E-05 8.8E-10 57.2 7.1 65 19-83 37-152 (218)
149 PF01728 FtsJ: FtsJ-like methy 97.9 5.5E-05 1.2E-09 54.5 7.6 78 8-85 7-138 (181)
150 PF00891 Methyltransf_2: O-met 97.9 5.1E-05 1.1E-09 57.0 7.6 73 16-90 97-203 (241)
151 PF05219 DREV: DREV methyltran 97.9 0.00032 7E-09 53.6 11.5 108 19-128 94-236 (265)
152 PF05891 Methyltransf_PK: AdoM 97.9 6.8E-06 1.5E-10 61.2 2.3 93 7-99 38-176 (218)
153 PHA03412 putative methyltransf 97.9 0.00023 4.9E-09 53.9 10.1 65 19-83 49-160 (241)
154 KOG2904 Predicted methyltransf 97.9 8.9E-05 1.9E-09 57.1 7.9 39 5-43 128-172 (328)
155 KOG3010 Methyltransferase [Gen 97.8 5.1E-05 1.1E-09 57.3 6.2 76 9-84 22-135 (261)
156 PRK11933 yebU rRNA (cytosine-C 97.8 0.00013 2.7E-09 60.4 8.6 83 6-88 98-244 (470)
157 PF02390 Methyltransf_4: Putat 97.8 6E-05 1.3E-09 55.4 6.0 64 21-84 19-131 (195)
158 TIGR00095 RNA methyltransferas 97.8 0.00021 4.6E-09 52.2 8.9 75 11-85 41-158 (189)
159 COG0220 Predicted S-adenosylme 97.7 0.00028 6E-09 53.1 8.9 65 21-85 50-163 (227)
160 PRK13168 rumA 23S rRNA m(5)U19 97.7 0.0002 4.3E-09 58.7 8.9 67 18-85 296-399 (443)
161 PRK00536 speE spermidine synth 97.7 0.00014 2.9E-09 55.9 7.1 65 18-85 71-170 (262)
162 KOG1271 Methyltransferases [Ge 97.7 0.00051 1.1E-08 50.2 9.4 71 19-89 67-184 (227)
163 KOG1541 Predicted protein carb 97.7 0.00012 2.7E-09 54.8 6.0 67 19-85 50-159 (270)
164 COG3963 Phospholipid N-methylt 97.6 0.00043 9.3E-09 49.8 7.9 82 3-84 32-154 (194)
165 PRK03522 rumB 23S rRNA methylu 97.6 0.00036 7.9E-09 54.7 8.4 68 18-85 172-273 (315)
166 PF01564 Spermine_synth: Sperm 97.6 0.00019 4.1E-09 54.6 6.5 69 18-86 75-191 (246)
167 TIGR00479 rumA 23S rRNA (uraci 97.6 0.00032 7E-09 57.2 7.6 66 18-84 291-394 (431)
168 KOG1499 Protein arginine N-met 97.5 0.00014 3.1E-09 57.4 5.0 26 17-42 58-83 (346)
169 PHA03411 putative methyltransf 97.5 0.00087 1.9E-08 51.8 8.5 24 18-41 63-86 (279)
170 PF03602 Cons_hypoth95: Conser 97.5 0.00027 5.9E-09 51.4 5.4 78 9-86 31-153 (183)
171 COG1092 Predicted SAM-dependen 97.5 0.0012 2.6E-08 53.5 9.5 74 15-88 213-338 (393)
172 TIGR00478 tly hemolysin TlyA f 97.4 0.00022 4.9E-09 53.7 4.7 22 19-40 75-96 (228)
173 PF05724 TPMT: Thiopurine S-me 97.4 0.0015 3.3E-08 48.8 9.1 80 4-84 23-153 (218)
174 PRK04338 N(2),N(2)-dimethylgua 97.4 0.0012 2.7E-08 53.2 8.9 64 21-85 59-157 (382)
175 PLN02585 magnesium protoporphy 97.4 0.00097 2.1E-08 52.5 7.8 22 19-40 144-165 (315)
176 COG0293 FtsJ 23S rRNA methylas 97.4 0.00088 1.9E-08 49.6 6.9 68 18-85 44-158 (205)
177 COG2521 Predicted archaeal met 97.4 0.0017 3.7E-08 49.2 8.4 66 18-83 133-242 (287)
178 TIGR02085 meth_trns_rumB 23S r 97.3 0.0015 3.3E-08 52.5 8.4 67 18-85 232-333 (374)
179 PRK01544 bifunctional N5-gluta 97.3 0.0011 2.4E-08 55.4 7.8 66 19-84 347-460 (506)
180 KOG3045 Predicted RNA methylas 97.2 0.0014 3E-08 50.3 6.7 80 9-88 170-266 (325)
181 PF03141 Methyltransf_29: Puta 97.2 0.0029 6.4E-08 52.4 8.9 103 17-141 363-506 (506)
182 PRK00274 ksgA 16S ribosomal RN 97.2 0.00062 1.3E-08 52.4 4.8 39 4-42 27-65 (272)
183 PRK14896 ksgA 16S ribosomal RN 97.1 0.00087 1.9E-08 51.1 4.6 39 3-41 13-51 (258)
184 PF05185 PRMT5: PRMT5 arginine 97.1 0.00065 1.4E-08 56.0 4.1 64 20-83 187-294 (448)
185 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.0029 6.2E-08 51.0 7.7 64 21-85 46-146 (374)
186 PF01739 CheR: CheR methyltran 97.1 0.0014 3.1E-08 48.2 5.4 37 49-85 133-174 (196)
187 TIGR00755 ksgA dimethyladenosi 97.0 0.0012 2.5E-08 50.2 4.7 39 4-42 14-52 (253)
188 KOG4589 Cell division protein 97.0 0.0062 1.3E-07 44.7 7.9 72 18-91 68-187 (232)
189 COG3510 CmcI Cephalosporin hyd 97.0 0.014 3E-07 43.1 9.7 113 4-119 54-210 (237)
190 COG1352 CheR Methylase of chem 97.0 0.0045 9.8E-08 47.7 7.6 37 49-85 199-240 (268)
191 PRK13256 thiopurine S-methyltr 97.0 0.018 3.9E-07 43.4 10.6 69 19-87 43-164 (226)
192 PF07942 N2227: N2227-like pro 96.8 0.0051 1.1E-07 47.5 7.0 35 50-85 163-201 (270)
193 PF10672 Methyltrans_SAM: S-ad 96.8 0.0022 4.8E-08 49.9 4.8 70 16-85 120-237 (286)
194 PF01269 Fibrillarin: Fibrilla 96.8 0.0058 1.3E-07 45.9 6.6 67 18-84 72-176 (229)
195 KOG1709 Guanidinoacetate methy 96.7 0.014 3.1E-07 43.8 8.3 70 18-88 100-208 (271)
196 PF13679 Methyltransf_32: Meth 96.7 0.01 2.2E-07 41.1 7.1 50 8-62 10-63 (141)
197 KOG3191 Predicted N6-DNA-methy 96.7 0.0081 1.8E-07 43.9 6.6 25 19-43 43-67 (209)
198 COG0742 N6-adenine-specific me 96.7 0.011 2.4E-07 43.2 7.3 77 9-85 32-153 (187)
199 COG0144 Sun tRNA and rRNA cyto 96.6 0.015 3.2E-07 46.6 8.3 85 4-88 141-290 (355)
200 COG1041 Predicted DNA modifica 96.6 0.016 3.4E-07 46.2 8.0 83 2-85 180-309 (347)
201 PTZ00338 dimethyladenosine tra 96.5 0.0038 8.2E-08 48.7 4.5 38 4-41 21-58 (294)
202 PLN02232 ubiquinone biosynthes 96.4 0.0082 1.8E-07 42.5 5.2 40 48-87 40-82 (160)
203 COG4798 Predicted methyltransf 96.4 0.0088 1.9E-07 44.2 5.2 71 16-86 45-166 (238)
204 COG1189 Predicted rRNA methyla 96.3 0.013 2.8E-07 44.4 6.1 67 18-84 78-176 (245)
205 COG0030 KsgA Dimethyladenosine 96.3 0.017 3.7E-07 44.3 6.8 34 10-43 21-54 (259)
206 KOG2798 Putative trehalase [Ca 96.3 0.026 5.6E-07 44.5 7.7 34 50-84 257-294 (369)
207 PF03291 Pox_MCEL: mRNA cappin 96.3 0.011 2.4E-07 46.9 5.9 34 51-84 144-184 (331)
208 PRK10611 chemotaxis methyltran 96.3 0.023 5.1E-07 44.2 7.4 36 50-85 221-261 (287)
209 KOG1269 SAM-dependent methyltr 96.2 0.016 3.4E-07 46.7 6.3 73 16-88 107-217 (364)
210 KOG2940 Predicted methyltransf 96.1 0.0036 7.7E-08 47.5 2.0 66 20-85 73-173 (325)
211 KOG1975 mRNA cap methyltransfe 96.0 0.025 5.3E-07 44.9 6.3 34 51-84 195-235 (389)
212 TIGR02987 met_A_Alw26 type II 95.9 0.11 2.4E-06 43.5 10.5 38 5-42 10-54 (524)
213 PRK04148 hypothetical protein; 95.9 0.014 3.1E-07 40.4 4.2 64 7-88 4-68 (134)
214 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.9 0.034 7.3E-07 43.1 6.6 80 7-86 73-219 (283)
215 PF02384 N6_Mtase: N-6 DNA Met 95.9 0.022 4.7E-07 44.3 5.6 37 4-40 31-67 (311)
216 PF12147 Methyltransf_20: Puta 95.8 0.093 2E-06 41.0 8.8 82 11-92 127-255 (311)
217 PF08123 DOT1: Histone methyla 95.8 0.031 6.8E-07 41.4 5.8 72 14-85 37-157 (205)
218 KOG3201 Uncharacterized conser 95.7 0.0096 2.1E-07 42.8 2.7 66 19-84 29-138 (201)
219 PF01170 UPF0020: Putative RNA 95.5 0.069 1.5E-06 38.6 6.6 82 3-84 12-149 (179)
220 COG5459 Predicted rRNA methyla 95.3 0.024 5.2E-07 45.5 3.8 67 18-84 112-223 (484)
221 KOG1500 Protein arginine N-met 95.3 0.05 1.1E-06 43.6 5.6 65 19-83 177-279 (517)
222 PRK11760 putative 23S rRNA C24 95.2 0.064 1.4E-06 42.9 6.2 61 18-79 210-296 (357)
223 COG2263 Predicted RNA methylas 95.2 0.042 9.2E-07 40.3 4.7 37 4-40 27-66 (198)
224 KOG2793 Putative N2,N2-dimethy 95.1 0.072 1.6E-06 40.7 5.9 23 19-41 86-108 (248)
225 COG1889 NOP1 Fibrillarin-like 94.8 0.13 2.9E-06 38.3 6.4 67 17-84 74-178 (231)
226 PF00398 RrnaAD: Ribosomal RNA 94.8 0.031 6.7E-07 42.7 3.3 38 4-41 15-52 (262)
227 COG3897 Predicted methyltransf 94.8 0.12 2.6E-06 38.3 6.0 24 18-41 78-101 (218)
228 PF02475 Met_10: Met-10+ like- 94.7 0.067 1.5E-06 39.5 4.8 65 17-83 99-199 (200)
229 PHA01634 hypothetical protein 94.4 0.075 1.6E-06 36.8 4.0 44 19-62 28-102 (156)
230 PF09243 Rsm22: Mitochondrial 94.3 0.35 7.6E-06 37.3 8.1 34 9-42 20-56 (274)
231 PLN02672 methionine S-methyltr 94.1 0.088 1.9E-06 47.8 4.9 38 5-42 100-141 (1082)
232 PF03059 NAS: Nicotianamine sy 94.1 0.16 3.4E-06 39.4 5.7 67 19-85 120-229 (276)
233 TIGR01444 fkbM_fam methyltrans 94.1 0.042 9E-07 37.5 2.3 21 22-42 1-21 (143)
234 KOG1596 Fibrillarin and relate 94.0 0.31 6.6E-06 37.4 7.0 68 18-85 155-260 (317)
235 TIGR02143 trmA_only tRNA (urac 93.8 0.14 2.9E-06 41.0 5.1 23 20-42 198-220 (353)
236 KOG0820 Ribosomal RNA adenine 93.8 0.1 2.2E-06 40.6 4.0 38 5-42 44-81 (315)
237 KOG1562 Spermidine synthase [A 93.6 0.38 8.3E-06 37.8 7.1 110 16-140 118-281 (337)
238 KOG3178 Hydroxyindole-O-methyl 93.5 0.44 9.4E-06 38.0 7.4 70 20-89 178-279 (342)
239 PRK11727 23S rRNA mA1618 methy 93.4 0.13 2.7E-06 40.8 4.2 24 19-42 114-137 (321)
240 KOG1122 tRNA and rRNA cytosine 93.2 0.21 4.6E-06 40.9 5.3 69 18-86 240-371 (460)
241 PRK00050 16S rRNA m(4)C1402 me 93.0 0.17 3.7E-06 39.6 4.4 37 9-46 10-46 (296)
242 KOG3987 Uncharacterized conser 92.7 0.043 9.3E-07 41.1 0.7 70 19-88 112-209 (288)
243 PF12242 Eno-Rase_NADH_b: NAD( 92.7 0.19 4.2E-06 31.4 3.4 26 17-42 36-62 (78)
244 PRK01747 mnmC bifunctional tRN 92.6 0.33 7.2E-06 41.8 6.1 34 51-84 165-204 (662)
245 PRK05031 tRNA (uracil-5-)-meth 92.5 0.25 5.3E-06 39.7 4.8 22 21-42 208-229 (362)
246 KOG1099 SAM-dependent methyltr 92.1 0.14 3.1E-06 38.9 2.7 66 19-84 41-161 (294)
247 TIGR03439 methyl_EasF probable 91.9 0.88 1.9E-05 36.0 7.1 24 19-42 76-99 (319)
248 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.8 0.2 4.3E-06 38.5 3.3 37 52-88 158-201 (256)
249 PF06859 Bin3: Bicoid-interact 91.5 0.16 3.4E-06 34.1 2.2 39 52-90 1-48 (110)
250 COG4262 Predicted spermidine s 91.5 0.92 2E-05 36.9 6.8 67 18-85 288-406 (508)
251 PF05206 TRM13: Methyltransfer 91.4 0.58 1.3E-05 36.0 5.5 37 7-43 3-42 (259)
252 KOG1331 Predicted methyltransf 91.1 0.25 5.4E-06 38.4 3.2 76 6-84 35-141 (293)
253 COG1063 Tdh Threonine dehydrog 90.8 1.5 3.3E-05 34.9 7.6 66 19-87 168-270 (350)
254 PF06962 rRNA_methylase: Putat 89.3 0.47 1E-05 33.1 3.1 67 51-130 45-123 (140)
255 KOG1253 tRNA methyltransferase 89.0 0.32 6.9E-06 40.6 2.4 75 12-87 102-217 (525)
256 KOG3115 Methyltransferase-like 88.7 0.3 6.5E-06 36.5 1.9 24 21-44 62-85 (249)
257 PF08351 DUF1726: Domain of un 87.0 0.96 2.1E-05 29.2 3.3 37 48-84 7-43 (92)
258 PF12692 Methyltransf_17: S-ad 86.8 4.6 9.9E-05 28.7 6.8 81 9-89 16-137 (160)
259 COG2265 TrmA SAM-dependent met 86.5 4.1 8.8E-05 33.7 7.5 81 3-84 273-394 (432)
260 PRK15001 SAM-dependent 23S rib 86.2 4.9 0.00011 32.6 7.6 76 10-85 35-141 (378)
261 COG1064 AdhP Zn-dependent alco 86.1 1.9 4.2E-05 34.5 5.2 68 16-87 163-260 (339)
262 PF11968 DUF3321: Putative met 86.1 0.72 1.6E-05 34.6 2.6 61 21-81 53-139 (219)
263 COG2520 Predicted methyltransf 85.3 4.1 8.8E-05 32.7 6.7 69 18-88 187-291 (341)
264 PF14314 Methyltrans_Mon: Viru 84.5 4.9 0.00011 35.1 7.2 68 19-87 322-457 (675)
265 cd08283 FDH_like_1 Glutathione 84.4 8.6 0.00019 30.7 8.4 30 14-43 179-209 (386)
266 PRK11524 putative methyltransf 83.7 2.1 4.5E-05 33.1 4.4 36 50-85 25-79 (284)
267 KOG2198 tRNA cytosine-5-methyl 83.4 3.3 7.1E-05 33.5 5.4 27 16-42 152-178 (375)
268 KOG0024 Sorbitol dehydrogenase 83.2 5.2 0.00011 32.0 6.4 80 3-85 144-272 (354)
269 cd08254 hydroxyacyl_CoA_DH 6-h 82.9 5.8 0.00013 30.4 6.7 65 17-84 163-261 (338)
270 KOG1098 Putative SAM-dependent 82.6 1.9 4.1E-05 37.3 3.9 66 18-83 43-155 (780)
271 cd08237 ribitol-5-phosphate_DH 82.3 7.4 0.00016 30.5 7.1 67 18-85 162-255 (341)
272 PF07757 AdoMet_MTase: Predict 82.1 1.4 2.9E-05 29.6 2.4 22 19-40 58-79 (112)
273 KOG2651 rRNA adenine N-6-methy 81.9 2.2 4.7E-05 34.9 3.9 35 8-42 142-176 (476)
274 KOG3420 Predicted RNA methylas 81.4 1.5 3.2E-05 31.3 2.4 30 9-38 35-67 (185)
275 PF00107 ADH_zinc_N: Zinc-bind 81.3 5 0.00011 26.5 5.1 74 8-87 3-90 (130)
276 KOG4058 Uncharacterized conser 81.3 10 0.00022 27.1 6.7 79 6-84 59-170 (199)
277 TIGR01202 bchC 2-desacetyl-2-h 81.2 7.9 0.00017 29.9 6.8 64 19-85 144-230 (308)
278 PRK09424 pntA NAD(P) transhydr 81.0 4.5 9.8E-05 34.2 5.7 70 18-87 163-286 (509)
279 cd05188 MDR Medium chain reduc 80.6 9.5 0.00021 27.9 6.9 64 18-84 133-230 (271)
280 PRK06249 2-dehydropantoate 2-r 80.4 6.5 0.00014 30.6 6.1 34 51-84 71-104 (313)
281 PLN02668 indole-3-acetate carb 80.3 1.3 2.8E-05 36.1 2.2 19 20-38 64-82 (386)
282 PRK09880 L-idonate 5-dehydroge 80.1 9.5 0.00021 29.8 7.0 64 19-85 169-265 (343)
283 TIGR00853 pts-lac PTS system, 79.9 1.7 3.6E-05 28.1 2.3 56 20-79 3-74 (95)
284 KOG1501 Arginine N-methyltrans 79.5 1.7 3.7E-05 36.2 2.6 22 22-43 69-90 (636)
285 PF05430 Methyltransf_30: S-ad 79.5 2.6 5.7E-05 28.7 3.2 35 50-84 48-88 (124)
286 PRK10309 galactitol-1-phosphat 78.5 12 0.00026 29.2 7.1 67 18-86 159-260 (347)
287 COG1893 ApbA Ketopantoate redu 78.4 8.9 0.00019 30.1 6.3 35 50-84 65-99 (307)
288 TIGR02822 adh_fam_2 zinc-bindi 78.1 17 0.00037 28.3 7.9 68 16-86 162-254 (329)
289 PRK10742 putative methyltransf 78.0 4.1 8.9E-05 31.2 4.2 33 8-40 75-109 (250)
290 PF07091 FmrO: Ribosomal RNA m 77.8 11 0.00024 29.0 6.4 62 19-90 105-166 (251)
291 COG0604 Qor NADPH:quinone redu 77.1 19 0.00041 28.4 7.9 67 15-85 138-240 (326)
292 cd08294 leukotriene_B4_DH_like 77.0 13 0.00029 28.3 6.9 67 14-84 138-239 (329)
293 PRK13699 putative methylase; P 76.7 4.4 9.6E-05 30.4 4.0 36 49-84 17-70 (227)
294 PF02005 TRM: N2,N2-dimethylgu 76.7 3.9 8.4E-05 33.2 3.9 68 19-87 49-155 (377)
295 PF04816 DUF633: Family of unk 76.0 8.5 0.00019 28.5 5.3 20 23-42 1-20 (205)
296 PF02636 Methyltransf_28: Puta 75.8 4.2 9.2E-05 30.7 3.8 24 20-43 19-42 (252)
297 PF05958 tRNA_U5-meth_tr: tRNA 75.3 3.8 8.2E-05 32.8 3.5 41 2-42 176-219 (352)
298 PRK10499 PTS system N,N'-diace 74.3 5.1 0.00011 26.4 3.4 66 21-90 4-85 (106)
299 TIGR02825 B4_12hDH leukotriene 73.6 26 0.00056 26.9 7.8 66 15-84 134-235 (325)
300 PF02558 ApbA: Ketopantoate re 73.5 6 0.00013 27.0 3.8 35 50-84 65-99 (151)
301 KOG2920 Predicted methyltransf 73.1 1.9 4.2E-05 33.5 1.3 23 18-40 115-137 (282)
302 PF04672 Methyltransf_19: S-ad 72.7 26 0.00056 27.2 7.3 26 63-88 167-192 (267)
303 TIGR03451 mycoS_dep_FDH mycoth 72.5 21 0.00047 28.0 7.2 66 17-85 174-275 (358)
304 PRK05708 2-dehydropantoate 2-r 71.9 15 0.00032 28.6 6.0 35 50-84 68-102 (305)
305 KOG1371 UDP-glucose 4-epimeras 71.6 21 0.00047 28.5 6.8 62 20-89 2-63 (343)
306 PRK09590 celB cellobiose phosp 71.4 3.4 7.4E-05 27.3 2.0 64 21-88 2-85 (104)
307 PF06460 NSP13: Coronavirus NS 70.8 13 0.00028 28.9 5.3 67 19-85 61-168 (299)
308 PRK06274 indolepyruvate oxidor 70.6 12 0.00026 27.0 5.0 34 50-88 65-98 (197)
309 COG0287 TyrA Prephenate dehydr 69.5 10 0.00023 29.4 4.6 33 51-83 63-95 (279)
310 PF03492 Methyltransf_7: SAM d 69.4 4.3 9.2E-05 32.3 2.5 23 18-40 15-37 (334)
311 TIGR00561 pntA NAD(P) transhyd 69.2 8.8 0.00019 32.5 4.4 26 18-43 162-188 (511)
312 cd08255 2-desacetyl-2-hydroxye 68.4 41 0.00089 25.0 7.7 67 15-84 93-188 (277)
313 PF01558 POR: Pyruvate ferredo 68.3 7.9 0.00017 27.3 3.5 34 51-89 56-89 (173)
314 PF03721 UDPG_MGDP_dh_N: UDP-g 67.8 6.9 0.00015 28.3 3.2 42 51-92 75-126 (185)
315 cd05278 FDH_like Formaldehyde 67.4 27 0.00059 26.9 6.7 66 16-84 164-265 (347)
316 COG0500 SmtA SAM-dependent met 67.0 5.1 0.00011 25.6 2.2 38 52-89 119-158 (257)
317 cd08281 liver_ADH_like1 Zinc-d 66.8 29 0.00062 27.4 6.8 66 17-85 189-289 (371)
318 PRK11199 tyrA bifunctional cho 66.8 7.3 0.00016 31.4 3.4 63 21-86 99-174 (374)
319 cd08295 double_bond_reductase_ 66.7 31 0.00068 26.7 6.9 66 15-84 147-249 (338)
320 PRK05225 ketol-acid reductoiso 66.6 17 0.00037 30.5 5.5 73 17-91 33-139 (487)
321 cd08285 NADP_ADH NADP(H)-depen 66.6 40 0.00087 26.2 7.5 67 16-85 163-265 (351)
322 cd05564 PTS_IIB_chitobiose_lic 66.5 2.6 5.6E-05 27.2 0.6 51 26-79 4-70 (96)
323 COG3007 Uncharacterized paraqu 66.5 7.2 0.00016 30.9 3.1 26 18-43 39-65 (398)
324 cd08261 Zn_ADH7 Alcohol dehydr 66.3 47 0.001 25.5 7.9 67 15-84 155-256 (337)
325 COG4301 Uncharacterized conser 65.9 62 0.0013 25.3 9.2 38 6-43 61-102 (321)
326 PF09445 Methyltransf_15: RNA 65.4 5 0.00011 28.7 2.0 22 21-42 1-22 (163)
327 KOG2187 tRNA uracil-5-methyltr 65.3 5.2 0.00011 33.8 2.3 40 3-42 363-406 (534)
328 PLN03154 putative allyl alcoho 65.2 40 0.00087 26.5 7.3 66 15-84 154-256 (348)
329 cd05565 PTS_IIB_lactose PTS_II 63.0 2.6 5.6E-05 27.6 0.1 55 23-81 3-73 (99)
330 PF14740 DUF4471: Domain of un 62.2 7.3 0.00016 30.5 2.5 38 48-87 218-255 (289)
331 PLN02256 arogenate dehydrogena 62.0 27 0.00059 27.3 5.8 63 18-82 34-123 (304)
332 PF07991 IlvN: Acetohydroxy ac 61.7 7 0.00015 28.1 2.2 65 19-85 3-94 (165)
333 TIGR03201 dearomat_had 6-hydro 61.2 33 0.00071 26.8 6.2 26 17-42 164-190 (349)
334 PRK09489 rsmC 16S ribosomal RN 61.1 83 0.0018 25.1 8.4 88 2-90 3-116 (342)
335 PRK08655 prephenate dehydrogen 60.9 16 0.00034 30.2 4.4 33 51-83 57-89 (437)
336 TIGR03366 HpnZ_proposed putati 59.9 73 0.0016 24.0 8.1 65 19-86 120-218 (280)
337 COG2384 Predicted SAM-dependen 59.4 75 0.0016 24.0 9.1 25 19-43 16-40 (226)
338 PF01210 NAD_Gly3P_dh_N: NAD-d 59.4 5.8 0.00013 27.7 1.5 34 51-84 68-101 (157)
339 COG1565 Uncharacterized conser 59.1 17 0.00037 29.4 4.2 22 20-41 78-99 (370)
340 cd08232 idonate-5-DH L-idonate 58.5 54 0.0012 25.2 6.9 63 19-84 165-260 (339)
341 PF03269 DUF268: Caenorhabditi 57.2 10 0.00022 27.4 2.3 37 49-85 60-110 (177)
342 cd08292 ETR_like_2 2-enoyl thi 57.1 80 0.0017 23.9 7.6 65 16-84 136-236 (324)
343 COG1867 TRM1 N2,N2-dimethylgua 56.6 40 0.00087 27.5 5.8 64 20-85 53-153 (380)
344 PLN02586 probable cinnamyl alc 56.5 62 0.0013 25.5 7.0 64 18-84 182-276 (360)
345 PRK07502 cyclohexadienyl dehyd 56.0 30 0.00066 26.7 5.1 33 51-83 65-97 (307)
346 PRK08818 prephenate dehydrogen 55.3 26 0.00057 28.4 4.7 62 20-82 4-84 (370)
347 KOG1209 1-Acyl dihydroxyaceton 54.9 22 0.00049 27.1 3.9 27 18-44 5-31 (289)
348 PRK06444 prephenate dehydrogen 54.2 14 0.0003 27.2 2.7 49 22-71 2-50 (197)
349 cd08293 PTGR2 Prostaglandin re 54.2 76 0.0017 24.4 7.1 60 21-84 156-252 (345)
350 PRK05479 ketol-acid reductoiso 53.9 27 0.00059 27.9 4.5 34 51-84 72-106 (330)
351 PRK06853 indolepyruvate oxidor 53.5 21 0.00046 25.8 3.7 31 52-87 68-98 (197)
352 KOG0781 Signal recognition par 53.3 76 0.0016 27.1 7.0 60 49-123 463-527 (587)
353 PF13604 AAA_30: AAA domain; P 53.1 84 0.0018 22.7 7.0 33 3-35 2-34 (196)
354 TIGR00745 apbA_panE 2-dehydrop 52.7 23 0.0005 26.7 3.9 35 50-84 57-91 (293)
355 PLN02827 Alcohol dehydrogenase 52.2 91 0.002 24.8 7.4 30 52-84 263-293 (378)
356 COG0059 IlvC Ketol-acid reduct 51.9 43 0.00093 26.7 5.2 71 18-90 16-116 (338)
357 cd08263 Zn_ADH10 Alcohol dehyd 51.5 65 0.0014 25.2 6.4 64 18-84 186-285 (367)
358 TIGR00006 S-adenosyl-methyltra 51.5 49 0.0011 26.1 5.6 36 9-46 11-46 (305)
359 PRK11064 wecC UDP-N-acetyl-D-m 51.5 61 0.0013 26.5 6.3 40 52-91 75-124 (415)
360 cd05213 NAD_bind_Glutamyl_tRNA 50.9 80 0.0017 24.6 6.7 38 51-88 237-274 (311)
361 PF08800 VirE_N: VirE N-termin 50.9 78 0.0017 21.6 6.1 51 73-141 25-76 (136)
362 PF08484 Methyltransf_14: C-me 50.8 87 0.0019 22.1 6.7 74 9-84 56-157 (160)
363 COG0677 WecC UDP-N-acetyl-D-ma 50.4 72 0.0016 26.5 6.4 26 67-92 109-134 (436)
364 PHA03108 poly(A) polymerase sm 49.7 1.3E+02 0.0028 23.7 7.9 77 7-88 46-140 (300)
365 cd05285 sorbitol_DH Sorbitol d 49.6 1.1E+02 0.0024 23.6 7.4 67 15-84 158-263 (343)
366 cd08236 sugar_DH NAD(P)-depend 49.6 1.2E+02 0.0025 23.3 7.9 67 15-84 155-256 (343)
367 KOG2352 Predicted spermine/spe 49.5 71 0.0015 27.0 6.4 38 47-84 109-159 (482)
368 cd08278 benzyl_alcohol_DH Benz 49.5 95 0.0021 24.4 7.1 66 16-84 183-283 (365)
369 cd08166 MPP_Cdc1_like_1 unchar 49.4 57 0.0012 24.0 5.3 25 68-92 33-57 (195)
370 PF07101 DUF1363: Protein of u 49.4 5.4 0.00012 26.1 -0.1 16 20-35 3-18 (124)
371 cd08279 Zn_ADH_class_III Class 49.1 1.1E+02 0.0024 24.0 7.3 67 15-84 178-280 (363)
372 PF01053 Cys_Met_Meta_PP: Cys/ 49.1 74 0.0016 25.9 6.4 87 4-90 54-182 (386)
373 COG4627 Uncharacterized protei 48.5 19 0.00042 25.9 2.6 39 47-85 42-85 (185)
374 COG4096 HsdR Type I site-speci 48.2 24 0.00052 31.7 3.6 17 48-64 281-297 (875)
375 KOG2811 Uncharacterized conser 47.8 21 0.00045 29.2 2.9 23 21-43 184-206 (420)
376 PF12500 TRSP: TRSP domain C t 47.2 55 0.0012 23.2 4.8 26 18-43 55-81 (155)
377 PF07090 DUF1355: Protein of u 47.0 24 0.00052 25.6 3.0 34 51-84 66-106 (177)
378 cd08234 threonine_DH_like L-th 46.9 95 0.0021 23.7 6.6 67 15-84 155-255 (334)
379 cd00401 AdoHcyase S-adenosyl-L 46.7 65 0.0014 26.6 5.8 63 19-84 201-287 (413)
380 PRK12439 NAD(P)H-dependent gly 46.7 29 0.00062 27.5 3.7 32 52-83 77-108 (341)
381 cd03143 A4_beta-galactosidase_ 46.4 26 0.00057 24.0 3.1 35 51-85 52-86 (154)
382 cd08298 CAD2 Cinnamyl alcohol 46.4 1.3E+02 0.0028 22.9 7.9 33 51-86 224-256 (329)
383 KOG0822 Protein kinase inhibit 46.3 23 0.0005 30.4 3.1 34 51-84 438-476 (649)
384 PLN02740 Alcohol dehydrogenase 46.1 1.2E+02 0.0026 24.1 7.1 28 15-42 194-222 (381)
385 COG0275 Predicted S-adenosylme 46.0 17 0.00037 28.8 2.2 22 63-84 221-242 (314)
386 PRK07417 arogenate dehydrogena 45.3 48 0.001 25.3 4.7 32 51-82 56-87 (279)
387 PRK11783 rlmL 23S rRNA m(2)G24 45.0 32 0.00069 30.2 4.0 35 6-40 176-211 (702)
388 PRK13403 ketol-acid reductoiso 44.8 50 0.0011 26.5 4.7 70 19-90 15-113 (335)
389 PF13602 ADH_zinc_N_2: Zinc-bi 44.5 8.7 0.00019 25.2 0.4 34 50-85 17-50 (127)
390 PRK07764 DNA polymerase III su 43.8 2.5E+02 0.0054 25.5 12.5 105 9-130 25-155 (824)
391 PF13709 DUF4159: Domain of un 43.7 49 0.0011 24.4 4.3 36 52-87 53-90 (207)
392 cd08239 THR_DH_like L-threonin 43.3 1.5E+02 0.0033 22.7 8.2 30 52-84 231-260 (339)
393 cd08245 CAD Cinnamyl alcohol d 43.2 1.5E+02 0.0032 22.6 7.2 66 16-84 159-254 (330)
394 PF02153 PDH: Prephenate dehyd 42.7 25 0.00054 26.6 2.7 33 51-83 44-76 (258)
395 KOG0069 Glyoxylate/hydroxypyru 42.2 80 0.0017 25.4 5.5 63 19-83 161-250 (336)
396 cd08243 quinone_oxidoreductase 42.0 1.4E+02 0.003 22.3 6.7 64 16-84 139-236 (320)
397 TIGR02764 spore_ybaN_pdaB poly 41.8 1.1E+02 0.0025 21.6 5.9 49 66-130 139-187 (191)
398 PF01555 N6_N4_Mtase: DNA meth 41.7 21 0.00045 25.6 2.0 19 67-85 37-55 (231)
399 TIGR02818 adh_III_F_hyde S-(hy 41.6 1.4E+02 0.0031 23.5 7.0 27 16-42 182-209 (368)
400 PF10237 N6-adenineMlase: Prob 41.5 1.3E+02 0.0028 21.4 8.2 81 4-84 8-121 (162)
401 PRK13512 coenzyme A disulfide 41.5 1.4E+02 0.0031 24.3 7.1 23 18-42 146-168 (438)
402 PRK14619 NAD(P)H-dependent gly 41.1 50 0.0011 25.6 4.2 64 19-85 3-80 (308)
403 COG4017 Uncharacterized protei 41.0 75 0.0016 23.8 4.7 72 8-86 33-129 (254)
404 TIGR03420 DnaA_homol_Hda DnaA 40.9 1E+02 0.0022 22.2 5.7 28 9-36 27-55 (226)
405 cd08240 6_hydroxyhexanoate_dh_ 40.7 1.4E+02 0.003 23.1 6.7 30 52-84 243-272 (350)
406 cd08231 MDR_TM0436_like Hypoth 40.4 1.5E+02 0.0033 23.0 6.9 30 52-84 249-278 (361)
407 cd05286 QOR2 Quinone oxidoredu 40.2 1.5E+02 0.0033 21.9 6.9 66 15-84 132-233 (320)
408 KOG2978 Dolichol-phosphate man 39.8 63 0.0014 24.1 4.2 43 48-91 86-128 (238)
409 cd05125 Mth938_2P1-like Mth938 39.6 59 0.0013 21.7 3.8 63 50-133 52-114 (114)
410 PF14258 DUF4350: Domain of un 39.6 48 0.001 19.5 3.1 19 66-84 50-68 (70)
411 COG1658 Small primase-like pro 39.6 74 0.0016 21.8 4.3 39 54-92 31-69 (127)
412 PRK05537 bifunctional sulfate 39.2 2.5E+02 0.0055 24.2 11.4 80 3-88 373-474 (568)
413 COG4076 Predicted RNA methylas 39.0 40 0.00086 25.2 3.1 21 20-40 33-53 (252)
414 cd08277 liver_alcohol_DH_like 39.0 1.7E+02 0.0037 22.9 7.0 27 16-42 181-208 (365)
415 TIGR00518 alaDH alanine dehydr 38.9 40 0.00087 27.1 3.4 24 19-42 166-190 (370)
416 cd08300 alcohol_DH_class_III c 38.7 1.9E+02 0.0041 22.7 7.3 27 16-42 183-210 (368)
417 PLN02712 arogenate dehydrogena 38.6 63 0.0014 28.3 4.8 33 52-85 108-141 (667)
418 PF02951 GSH-S_N: Prokaryotic 38.5 21 0.00046 24.1 1.5 36 50-86 76-114 (119)
419 PRK12921 2-dehydropantoate 2-r 38.2 55 0.0012 25.0 4.0 34 51-84 67-100 (305)
420 TIGR02884 spore_pdaA delta-lac 37.3 1.7E+02 0.0037 21.6 6.9 47 66-130 174-220 (224)
421 PF10727 Rossmann-like: Rossma 37.1 14 0.00029 25.3 0.4 35 50-85 66-102 (127)
422 cd08266 Zn_ADH_like1 Alcohol d 37.0 1.7E+02 0.0037 22.0 6.6 30 51-84 234-263 (342)
423 PRK06545 prephenate dehydrogen 36.3 83 0.0018 25.1 4.9 34 51-85 59-93 (359)
424 KOG2352 Predicted spermine/spe 36.2 68 0.0015 27.1 4.3 72 19-90 295-420 (482)
425 PF03686 UPF0146: Uncharacteri 36.1 43 0.00093 23.0 2.7 43 10-62 4-46 (127)
426 PRK08441 oorC 2-oxoglutarate-a 35.9 59 0.0013 23.3 3.6 31 51-86 67-97 (183)
427 COG1255 Uncharacterized protei 35.6 37 0.00081 23.1 2.3 58 10-88 4-61 (129)
428 COG1444 Predicted P-loop ATPas 35.5 45 0.00098 29.7 3.4 38 48-85 88-125 (758)
429 PF03720 UDPG_MGDP_dh_C: UDP-g 35.4 43 0.00094 21.6 2.6 34 51-85 65-99 (106)
430 TIGR02175 PorC_KorC 2-oxoacid: 35.2 77 0.0017 22.5 4.1 31 51-86 65-97 (177)
431 PF05971 Methyltransf_10: Prot 35.1 35 0.00077 26.9 2.5 12 21-32 104-115 (299)
432 cd08164 MPP_Ted1 Saccharomyces 34.6 1.4E+02 0.0031 21.9 5.5 47 64-120 30-77 (193)
433 PLN02514 cinnamyl-alcohol dehy 34.4 1.9E+02 0.0042 22.6 6.7 65 18-85 179-274 (357)
434 PF04445 SAM_MT: Putative SAM- 34.4 38 0.00082 25.7 2.5 32 9-40 63-96 (234)
435 TIGR02717 AcCoA-syn-alpha acet 34.2 1E+02 0.0022 25.5 5.1 68 16-84 3-95 (447)
436 PRK14029 pyruvate/ketoisovaler 33.9 98 0.0021 22.2 4.5 33 50-87 64-98 (185)
437 cd08233 butanediol_DH_like (2R 33.7 2.2E+02 0.0048 22.0 6.8 30 52-84 241-270 (351)
438 PRK08537 2-oxoglutarate ferred 33.7 85 0.0019 22.2 4.1 31 52-87 67-97 (177)
439 COG0373 HemA Glutamyl-tRNA red 33.5 1.1E+02 0.0025 25.2 5.2 36 50-85 236-272 (414)
440 PRK08306 dipicolinate synthase 33.0 2.3E+02 0.005 22.0 6.8 30 51-83 209-238 (296)
441 TIGR00006 S-adenosyl-methyltra 32.9 16 0.00034 28.9 0.2 18 67-84 221-238 (305)
442 TIGR02817 adh_fam_1 zinc-bindi 32.3 2E+02 0.0043 21.9 6.3 62 20-84 149-245 (336)
443 PF10100 DUF2338: Uncharacteri 32.2 2.6E+02 0.0057 23.3 7.0 36 49-84 80-117 (429)
444 TIGR00692 tdh L-threonine 3-de 31.8 2.4E+02 0.0052 21.7 8.3 31 51-84 229-259 (340)
445 PRK10444 UMP phosphatase; Prov 31.7 2.3E+02 0.0049 21.4 7.4 38 52-89 108-145 (248)
446 cd08242 MDR_like Medium chain 31.2 2.3E+02 0.0051 21.4 7.3 31 51-84 213-243 (319)
447 PRK06522 2-dehydropantoate 2-r 31.2 85 0.0018 23.8 4.0 34 51-84 65-98 (304)
448 PF09857 DUF2084: Uncharacteri 31.1 93 0.002 19.8 3.4 30 1-30 1-37 (85)
449 PRK08338 2-oxoglutarate ferred 31.0 1.4E+02 0.003 21.0 4.9 32 50-86 62-93 (170)
450 PF05728 UPF0227: Uncharacteri 30.6 2.1E+02 0.0045 20.7 7.2 34 9-42 47-81 (187)
451 PRK13687 hypothetical protein; 30.4 97 0.0021 19.7 3.4 30 1-30 1-37 (85)
452 PF08532 Glyco_hydro_42M: Beta 30.4 56 0.0012 23.8 2.8 35 51-85 56-90 (207)
453 TIGR00465 ilvC ketol-acid redu 30.2 1.1E+02 0.0025 24.0 4.6 34 51-84 58-92 (314)
454 PF03807 F420_oxidored: NADP o 30.2 69 0.0015 19.7 2.9 63 20-83 25-91 (96)
455 PRK08114 cystathionine beta-ly 30.2 3.1E+02 0.0066 22.4 7.3 33 5-37 62-94 (395)
456 COG0399 WecE Predicted pyridox 30.0 2.4E+02 0.0052 23.0 6.5 79 4-84 33-129 (374)
457 TIGR03334 IOR_beta indolepyruv 29.6 1.2E+02 0.0026 21.8 4.3 33 51-88 63-95 (189)
458 cd05282 ETR_like 2-enoyl thioe 29.5 2.4E+02 0.0053 21.1 6.4 64 17-84 136-235 (323)
459 PRK14958 DNA polymerase III su 29.4 3.5E+02 0.0076 22.9 8.8 105 9-130 26-154 (509)
460 cd04480 RPA1_DBD_A_like RPA1_D 29.2 1.2E+02 0.0025 18.7 3.8 37 50-86 18-59 (86)
461 smart00489 DEXDc3 DEAD-like he 29.1 93 0.002 24.1 3.9 37 4-40 10-48 (289)
462 smart00488 DEXDc2 DEAD-like he 29.1 93 0.002 24.1 3.9 37 4-40 10-48 (289)
463 PLN02702 L-idonate 5-dehydroge 29.1 2.8E+02 0.006 21.6 7.0 30 52-84 254-283 (364)
464 PRK12480 D-lactate dehydrogena 28.4 1.3E+02 0.0028 23.8 4.7 33 51-83 197-231 (330)
465 PF03446 NAD_binding_2: NAD bi 28.0 76 0.0016 22.0 3.0 34 51-84 56-92 (163)
466 cd08297 CAD3 Cinnamyl alcohol 27.8 2.8E+02 0.006 21.2 6.8 66 16-84 162-263 (341)
467 PRK06234 methionine gamma-lyas 27.6 3E+02 0.0066 22.2 6.8 33 5-37 64-96 (400)
468 PF06258 Mito_fiss_Elm1: Mitoc 27.3 1.2E+02 0.0025 23.9 4.2 40 20-59 58-104 (311)
469 cd08250 Mgc45594_like Mgc45594 27.1 2.8E+02 0.006 21.0 6.4 65 16-84 136-235 (329)
470 COG1440 CelA Phosphotransferas 26.9 14 0.00031 24.3 -0.8 59 27-88 7-83 (102)
471 PRK14192 bifunctional 5,10-met 26.8 1.1E+02 0.0024 23.8 3.9 61 18-85 157-229 (283)
472 TIGR00872 gnd_rel 6-phosphoglu 26.7 1.1E+02 0.0025 23.5 4.1 32 52-83 59-90 (298)
473 PTZ00354 alcohol dehydrogenase 26.6 2.8E+02 0.0061 20.8 6.8 65 16-84 137-238 (334)
474 PF12740 Chlorophyllase2: Chlo 26.2 3.1E+02 0.0066 21.2 6.2 39 47-85 11-49 (259)
475 PF04189 Gcd10p: Gcd10p family 26.2 1.9E+02 0.0041 22.8 5.2 45 2-46 184-228 (299)
476 cd05288 PGDH Prostaglandin deh 25.9 2.8E+02 0.0061 20.9 6.2 64 17-84 143-242 (329)
477 cd08301 alcohol_DH_plants Plan 25.3 3.3E+02 0.0072 21.2 7.0 28 15-42 183-211 (369)
478 PRK08534 pyruvate ferredoxin o 25.2 1.6E+02 0.0034 20.9 4.3 16 71-86 82-97 (181)
479 TIGR02873 spore_ylxY probable 25.0 3.1E+02 0.0068 21.0 6.2 46 66-130 218-263 (268)
480 cd05279 Zn_ADH1 Liver alcohol 25.0 3.4E+02 0.0073 21.2 7.0 30 52-84 253-283 (365)
481 PRK10558 alpha-dehydro-beta-de 24.8 58 0.0013 24.9 2.1 29 52-80 40-69 (256)
482 PRK11747 dinG ATP-dependent DN 24.8 1E+02 0.0023 27.1 3.9 37 4-40 27-70 (697)
483 cd08241 QOR1 Quinone oxidoredu 24.7 2.9E+02 0.0063 20.4 6.9 65 16-84 136-236 (323)
484 TIGR02819 fdhA_non_GSH formald 24.5 3.7E+02 0.0081 21.6 8.0 21 67-87 280-300 (393)
485 smart00859 Semialdhyde_dh Semi 24.5 1.3E+02 0.0027 19.6 3.5 34 51-85 64-97 (122)
486 KOG0780 Signal recognition par 24.4 4E+02 0.0088 22.3 6.8 59 47-120 178-241 (483)
487 COG0541 Ffh Signal recognition 24.4 2.8E+02 0.0061 23.3 6.0 56 50-120 180-240 (451)
488 PRK04296 thymidine kinase; Pro 24.4 73 0.0016 22.8 2.5 33 50-82 76-108 (190)
489 PF09848 DUF2075: Uncharacteri 24.3 2.8E+02 0.0062 21.9 6.0 14 50-63 81-94 (352)
490 PF11899 DUF3419: Protein of u 24.0 1.2E+02 0.0027 24.6 3.9 41 49-89 292-337 (380)
491 TIGR03239 GarL 2-dehydro-3-deo 23.9 61 0.0013 24.7 2.0 29 52-80 33-62 (249)
492 cd08235 iditol_2_DH_like L-idi 23.9 3.3E+02 0.0072 20.7 7.7 65 17-84 163-263 (343)
493 KOG1367 3-phosphoglycerate kin 23.7 3.7E+02 0.0081 21.8 6.3 67 53-125 90-158 (416)
494 KOG1429 dTDP-glucose 4-6-dehyd 23.6 2.4E+02 0.0052 22.6 5.2 42 18-60 25-84 (350)
495 PHA03297 envelope glycoprotein 23.6 19 0.00041 25.6 -0.7 15 19-33 39-53 (185)
496 PF01358 PARP_regulatory: Poly 23.1 3.8E+02 0.0083 21.2 6.6 37 7-43 43-82 (294)
497 COG0240 GpsA Glycerol-3-phosph 23.1 1.6E+02 0.0034 23.7 4.2 31 53-83 72-102 (329)
498 PF00109 ketoacyl-synt: Beta-k 23.1 1.6E+02 0.0034 21.7 4.1 48 7-61 155-203 (254)
499 PRK14954 DNA polymerase III su 22.8 5.2E+02 0.011 22.6 8.5 64 50-130 93-162 (620)
500 PRK11658 UDP-4-amino-4-deoxy-L 22.7 3.5E+02 0.0076 21.5 6.3 33 4-38 32-64 (379)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=2.2e-37 Score=228.56 Aligned_cols=136 Identities=45% Similarity=0.834 Sum_probs=120.8
Q ss_pred CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------- 46 (143)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------- 46 (143)
|++++++|+||..+++..+|++||||||++||||+|||++++++++
T Consensus 27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 5789999999999999999999999999999999999999997766
Q ss_pred ---------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292 47 ---------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR 117 (143)
Q Consensus 47 ---------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~ 117 (143)
....++||+||+|+++.+|..+++.+.++|++||+|++||++|+|.+.++..+.+ ...++++|++
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~------~~~~ir~f~~ 180 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDP------KTVAIREFNE 180 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSH------HHHHHHHHHH
T ss_pred HhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhh------hHHHHHHHHH
Confidence 1124689999999999999999999999999999999999999999998843322 4556999999
Q ss_pred HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292 118 SLADDPRVQLSHVALGDGITICRRI 142 (143)
Q Consensus 118 ~l~~~~~~~~~~lp~~~Gl~~~~k~ 142 (143)
+|.++|+|+++++|+|||+++++||
T Consensus 181 ~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 181 YIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred HHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 9999999999999999999999996
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=1.3e-34 Score=218.90 Aligned_cols=142 Identities=54% Similarity=0.978 Sum_probs=122.8
Q ss_pred CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------- 46 (143)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------- 46 (143)
|++++++|+||..+++..+|++||||||++||||+|||++++++++
T Consensus 61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a 140 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
T ss_pred CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence 5689999999999999999999999999999999999999987665
Q ss_pred ----cC------CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHH
Q 032292 47 ----SE------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 116 (143)
Q Consensus 47 ----~~------~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~ 116 (143)
+. ..++||+||+|+++.+|..+++.++++|++||+|++||++|+|.+.++....++...+...+++++|+
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn 220 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELN 220 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHH
Confidence 11 13689999999999999999999999999999999999999999988753322221111233689999
Q ss_pred HHhhcCCCeeEEEeecCCeeEEEEEc
Q 032292 117 RSLADDPRVQLSHVALGDGITICRRI 142 (143)
Q Consensus 117 ~~l~~~~~~~~~~lp~~~Gl~~~~k~ 142 (143)
+.|.++|+|+++++|+|||+++++|+
T Consensus 221 ~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 221 KALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 99999999999999999999999987
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=1e-33 Score=216.72 Aligned_cols=136 Identities=46% Similarity=0.798 Sum_probs=122.2
Q ss_pred CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------- 46 (143)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------- 46 (143)
|++++++|+||..+++..++++||||||++||||+|+|+.++++++
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 5789999999999999999999999999999999999999887654
Q ss_pred ----cC-----CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292 47 ----SE-----NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR 117 (143)
Q Consensus 47 ----~~-----~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~ 117 (143)
+. ..++||+||+|+++.+|..+++.+.++|+|||+|++||++|+|.+.++....+ ...++++|++
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~------~t~~ir~fn~ 253 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDA------KTISIRNFNK 253 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCH------HHHHHHHHHH
Confidence 11 13689999999999999999999999999999999999999999988753221 3468999999
Q ss_pred HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292 118 SLADDPRVQLSHVALGDGITICRRI 142 (143)
Q Consensus 118 ~l~~~~~~~~~~lp~~~Gl~~~~k~ 142 (143)
.+.++|+|+++++|+|||+++++|+
T Consensus 254 ~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 254 KLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 9999999999999999999999986
No 4
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=5e-33 Score=209.31 Aligned_cols=141 Identities=55% Similarity=1.012 Sum_probs=125.6
Q ss_pred CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------- 46 (143)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------- 46 (143)
|++++++|+||..+++..++++|||||||+|+++++||++++++++
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 5789999999999999999999999999999999999999876554
Q ss_pred ----c-----CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292 47 ----S-----ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR 117 (143)
Q Consensus 47 ----~-----~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~ 117 (143)
+ ...++||+||+|+++..|..+++.+.++|+|||+|++||++|+|.+.++....+++.++ ..+++++|++
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~~ 208 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFNK 208 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHHH
Confidence 0 01368999999999999999999999999999999999999999999886544444444 5678999999
Q ss_pred HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292 118 SLADDPRVQLSHVALGDGITICRRI 142 (143)
Q Consensus 118 ~l~~~~~~~~~~lp~~~Gl~~~~k~ 142 (143)
++.++|+++++++|+|||+++++|+
T Consensus 209 ~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 209 LLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHhhCCCeEEEEEEeCCccEEEEEe
Confidence 9999999999999999999999986
No 5
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=207.41 Aligned_cols=135 Identities=41% Similarity=0.691 Sum_probs=122.0
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------- 46 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------- 46 (143)
.|++|+||..|++..++++||||||++||||+|||..++++++
T Consensus 44 ~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~ 123 (219)
T COG4122 44 DPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD 123 (219)
T ss_pred ChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence 4999999999999999999999999999999999999997665
Q ss_pred ---cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 032292 47 ---SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 123 (143)
Q Consensus 47 ---~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~ 123 (143)
....++||+||+|++|.+|+.+++.+.++|+|||++++||++++|.+..+.. +..++ ...+++.|++.+.++|
T Consensus 124 ~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 199 (219)
T COG4122 124 VLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYLLEDP 199 (219)
T ss_pred HHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHHhhCc
Confidence 1246899999999999999999999999999999999999999999888743 23333 5566999999999999
Q ss_pred CeeEEEeecCCeeEEEEEc
Q 032292 124 RVQLSHVALGDGITICRRI 142 (143)
Q Consensus 124 ~~~~~~lp~~~Gl~~~~k~ 142 (143)
+++++++|+|||+.+++|+
T Consensus 200 ~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 200 RYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred CceeEEEecCCceEEEeec
Confidence 9999999999999999986
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-32 Score=199.93 Aligned_cols=137 Identities=58% Similarity=0.983 Sum_probs=124.5
Q ss_pred CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------- 46 (143)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------- 46 (143)
|+++|++|+|++.++++.+|+++||||+.||||++.+|.++|++|+
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 7899999999999999999999999999999999999999999876
Q ss_pred ---------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHH---H
Q 032292 47 ---------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL---D 114 (143)
Q Consensus 47 ---------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~ 114 (143)
....+.|||+|+|++|.+|..+++++.+++|+||+|++||++|.|.+.+|+...+.+.+ .++ +
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~-----~~r~~~~ 209 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGR-----SIREALN 209 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchh-----hhhhhhh
Confidence 23468899999999999999999999999999999999999999988877665554433 356 9
Q ss_pred HHHHhhcCCCeeEEEeecCCeeEEEEEc
Q 032292 115 LNRSLADDPRVQLSHVALGDGITICRRI 142 (143)
Q Consensus 115 f~~~l~~~~~~~~~~lp~~~Gl~~~~k~ 142 (143)
||..|..||+++.+++|+|+|+++|+|+
T Consensus 210 ~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 210 LNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhhHhccCcceeeEeeeccCceeeeccC
Confidence 9999999999999999999999999985
No 7
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=5.2e-11 Score=88.44 Aligned_cols=80 Identities=29% Similarity=0.389 Sum_probs=60.5
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------ 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------ 46 (143)
..|.....+...+...+..+|||||||+|+.|..+++..++.++
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 45566666666667778899999999999999999988754332
Q ss_pred cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 47 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 ~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
....++||.|++++...+.+ +.+.+.|+|||.+++.
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence 11246899999998765544 4567899999999874
No 8
>PLN03075 nicotianamine synthase; Provisional
Probab=99.21 E-value=8.4e-11 Score=91.16 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=64.7
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEecc-ccHHHHHHHhhCCCCCc-----------------------------------
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ----------------------------------- 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g-~G~~t~~la~~~~~~~~----------------------------------- 46 (143)
+++.++++|..+... +|++|+||||| .|+++++++....++++
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da 186 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV 186 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch
Confidence 456788888888776 89999999999 55777777765443333
Q ss_pred -c-C-CCCceeEEEEcC----CccchHHHHHHHHhcccCCeEEEEec
Q 032292 47 -S-E-NEGSFDYAFVDA----DKDNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 47 -~-~-~~~~fD~v~~d~----~~~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
. . ..++||+||+++ ++.++..+++.+.+.|+|||++++..
T Consensus 187 ~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 187 MDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 1 1 236899999996 35688999999999999999998864
No 9
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.19 E-value=6.1e-10 Score=80.85 Aligned_cols=78 Identities=28% Similarity=0.283 Sum_probs=60.0
Q ss_pred HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCcee
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFD 54 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD 54 (143)
.++...+...+..+|||+|||+|..++.+++..+. ++ ....++||
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D 99 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKAD 99 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCC
Confidence 33334445567889999999999999999987653 22 01235799
Q ss_pred EEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292 55 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 55 ~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
+|++++....+...++.+.+.|+|||++++..+
T Consensus 100 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 100 AIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 999987666677889999999999999998654
No 10
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.19 E-value=2.1e-10 Score=77.08 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=59.1
Q ss_pred HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c----CCC
Q 032292 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S----ENE 50 (143)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~----~~~ 50 (143)
...+.......+..+|||+|||+|..+..+++..+. ++ . ...
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 333444444455689999999999999999998764 22 0 123
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
++||.|+++.....+...++.+.+.|+|||.+++.
T Consensus 87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 57999999876667778899999999999999875
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.18 E-value=5.6e-11 Score=78.85 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=50.4
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC-
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA- 60 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~- 60 (143)
+..+|||||||+|..++++++..+. .+ ....++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPG-ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 4689999999999999999995442 21 12346799999988
Q ss_pred Cccch------HHHHHHHHhcccCCeEEEEe
Q 032292 61 DKDNY------CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 61 ~~~~~------~~~~~~~~~~L~~gG~li~d 85 (143)
....+ ..+++.+.+.|+|||+++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 32222 34688999999999999986
No 12
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.16 E-value=1.9e-10 Score=85.40 Aligned_cols=78 Identities=32% Similarity=0.387 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cC
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SE 48 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~ 48 (143)
|.....+..++...+..+|||||||+|+.++.+++..+++++ ..
T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 444455555566778899999999999999999998765332 11
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 49 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 49 ~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
..++||+|++++....++ +.+.+.|+|||++++.
T Consensus 143 ~~~~fD~Ii~~~~~~~~~---~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIP---EALIDQLKEGGILVMP 176 (215)
T ss_pred ccCCCCEEEEcCCccccc---HHHHHhcCcCcEEEEE
Confidence 235799999987654443 4567899999999874
No 13
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1e-10 Score=86.27 Aligned_cols=79 Identities=25% Similarity=0.276 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCC------------Cc---------------------cCCC
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED------------GQ---------------------SENE 50 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~------------~~---------------------~~~~ 50 (143)
.|.....|..++...+..+|||||||+||.|+.||+....- ++ ....
T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 34444455555567788999999999999999999987520 00 1235
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.+||.|++.+.....+. .+++.|++||++++-
T Consensus 137 aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P 168 (209)
T COG2518 137 APYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP 168 (209)
T ss_pred CCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence 79999999988766554 457899999999873
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.15 E-value=2.8e-10 Score=85.88 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=62.8
Q ss_pred HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCce
Q 032292 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSF 53 (143)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~f 53 (143)
.+.......++.+|||+|||||-.|+.+++..+ .+. |+.+++|
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF 120 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF 120 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence 333344444789999999999999999999987 333 6678999
Q ss_pred eEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 54 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 54 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
|+|.+.-. ..++..+++++.|+|||||.+++-+...
T Consensus 121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 99998753 4578899999999999999888765543
No 15
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.15 E-value=2.6e-10 Score=84.17 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=53.8
Q ss_pred HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCC
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEG 51 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~ 51 (143)
..+..++...+..+|||||||+|+.+..+++.+++.++ ....+
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 33333444456689999999999999999988753332 01235
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
+||.|++++....++ +.+.+.|+|||++++.
T Consensus 142 ~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP---SALVRQLKDGGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh---HHHHHhcCcCcEEEEE
Confidence 899999998654443 5778999999999875
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.15 E-value=1.3e-10 Score=87.55 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=53.1
Q ss_pred HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCcee
Q 032292 11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFD 54 (143)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD 54 (143)
+..+....++.+|||+|||||.++..+++..++.++ +..+++||
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EE
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCcee
Confidence 334445567889999999999999999998765443 45678999
Q ss_pred EEEEcCCc---cchHHHHHHHHhcccCCeEEEEecc
Q 032292 55 YAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 55 ~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
.|++.-.. .+....++++.++|||||.+++-+.
T Consensus 119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 99987533 4677899999999999998876443
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.13 E-value=3.7e-10 Score=82.52 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=52.9
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADK 62 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~ 62 (143)
.++.+|||+|||+|..++.+++..+. ++ ....++||+|++++.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 34789999999999999999986653 22 111568999999874
Q ss_pred cchHHHHHHHHhcccCCeEEEEe
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.++...++.+.++|+|||++++-
T Consensus 122 ~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 122 ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEE
Confidence 56788899999999999999874
No 18
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.13 E-value=1.2e-10 Score=86.54 Aligned_cols=79 Identities=28% Similarity=0.282 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S 47 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~ 47 (143)
.|..-..+..++.+.+..+|||||||+||.|..+|..+.+.++ .
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 3444444445555788899999999999999999998776442 1
Q ss_pred CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
....+||.|++.+.....+. .+.+.|++||++|+-
T Consensus 137 ~~~apfD~I~v~~a~~~ip~---~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIPE---ALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGG-SEEEEEESSBBSS--H---HHHHTEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHHH---HHHHhcCCCcEEEEE
Confidence 23468999999987665443 467889999999973
No 19
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.12 E-value=2.2e-10 Score=84.74 Aligned_cols=69 Identities=23% Similarity=0.270 Sum_probs=57.5
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCCCC---c--------------------------cCCCCceeEEEEcCC---ccc
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDG---Q--------------------------SENEGSFDYAFVDAD---KDN 64 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~---~--------------------------~~~~~~fD~v~~d~~---~~~ 64 (143)
..++.+|.|+|||+|.+|..|+++.|..- . ...+.++|++|.++. ..+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlqWlpd 107 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQWLPD 107 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhhhccc
Confidence 45789999999999999999999998521 1 234568999999984 467
Q ss_pred hHHHHHHHHhcccCCeEEEEe
Q 032292 65 YCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 65 ~~~~~~~~~~~L~~gG~li~d 85 (143)
+.+.|..+...|+|||+|.++
T Consensus 108 H~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 108 HPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred cHHHHHHHHHhhCCCceEEEE
Confidence 788999999999999999986
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.10 E-value=9.6e-10 Score=81.99 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=55.8
Q ss_pred HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEE
Q 032292 14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAF 57 (143)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~ 57 (143)
.+...+.++|||+|||+|..+..+++..++.+. +...++||+|+
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 119 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVT 119 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEE
Confidence 334456789999999999999999988654332 22357899999
Q ss_pred EcCC---ccchHHHHHHHHhcccCCeEEEEec
Q 032292 58 VDAD---KDNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 58 ~d~~---~~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
+... ..++...++++.+.|+|||.+++.+
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 120 IGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 8642 3467788999999999999998643
No 21
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.09 E-value=4.1e-10 Score=81.81 Aligned_cols=66 Identities=30% Similarity=0.376 Sum_probs=52.9
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c-CCCCceeEEEEcCCc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S-ENEGSFDYAFVDADK 62 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~-~~~~~fD~v~~d~~~ 62 (143)
.++.+|||+|||+|+.++.++...+. ++ . ...++||+|++++ .
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-L 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-h
Confidence 45899999999999999999876543 22 1 1246899999987 5
Q ss_pred cchHHHHHHHHhcccCCeEEEEe
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.++...++.+.++|+|||++++.
T Consensus 119 ~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 119 ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hCHHHHHHHHHHhcCCCCEEEEE
Confidence 66788888999999999999863
No 22
>PRK04457 spermidine synthase; Provisional
Probab=99.09 E-value=3.6e-09 Score=81.03 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=56.9
Q ss_pred HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCC
Q 032292 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEG 51 (143)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~ 51 (143)
++..+....++++|||||||+|.++.++++..+. .+ ....+
T Consensus 57 m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~ 135 (262)
T PRK04457 57 MMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRH 135 (262)
T ss_pred HHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCC
Confidence 4444444457899999999999999999988763 21 12246
Q ss_pred ceeEEEEcCCccc-------hHHHHHHHHhcccCCeEEEEe
Q 032292 52 SFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 52 ~fD~v~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d 85 (143)
+||+|++|+.... ..++++.+.+.|+|||++++.
T Consensus 136 ~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 136 STDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 8999999974322 257899999999999999984
No 23
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.08 E-value=1.2e-09 Score=80.17 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEE
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAF 57 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~ 57 (143)
...+..+|||+|||+|..++.+++..++.++ +...++||.||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 3456789999999999999999887643222 11236799999
Q ss_pred EcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292 58 VDADKDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
+.+....+...++.+.++|+|||.++++..
T Consensus 117 ~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 117 IGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 987667788899999999999999998654
No 24
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.07 E-value=2e-09 Score=78.11 Aligned_cols=72 Identities=26% Similarity=0.234 Sum_probs=58.0
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c--CCC-CceeEEEEc
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S--ENE-GSFDYAFVD 59 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~--~~~-~~fD~v~~d 59 (143)
+..+.++++|||||||..|+.+|...| .++ + ..+ .+||.||+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIG 109 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIG 109 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEEC
Confidence 456788999999999999999995444 344 1 112 279999999
Q ss_pred CCccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 60 ADKDNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 60 ~~~~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
+. .+....++.+...|+|||.||++-+..
T Consensus 110 Gg-~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 110 GG-GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CC-CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 98 788999999999999999999976543
No 25
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.07 E-value=1.1e-09 Score=83.71 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=55.8
Q ss_pred HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cCCCCceeE
Q 032292 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SENEGSFDY 55 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~~~~~fD~ 55 (143)
+...+..+|||+|||+|..+..+++..++.++ +..+++||+
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeE
Confidence 34456789999999999999999886542211 234578999
Q ss_pred EEEcCC---ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 56 AFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 56 v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
|++... ..+....++++.+.|||||.+++-+..
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 998643 245678899999999999999876544
No 26
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=7.7e-10 Score=85.15 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEE
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYA 56 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v 56 (143)
+.+...+.+.++.+|||||||.|..++++|+....... +...++||-|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrI 141 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRI 141 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccccee
Confidence 44555556778999999999999999999999743111 3446779999
Q ss_pred EEcC-----CccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 57 FVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 57 ~~d~-----~~~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
++-+ .+.+|..+|+.+.++|+|||.++.+.+...
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 9754 345799999999999999999999877643
No 27
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.05 E-value=1.9e-09 Score=79.63 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=85.2
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccH--HHHHHHhhCCC-CCc---------------------------------
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTIPE-DGQ--------------------------------- 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~--~t~~la~~~~~-~~~--------------------------------- 46 (143)
-+|...+||+.||+..+++.|+|+.|+-|. +|+.||-+... .|+
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 367889999999999999999999877543 56666655332 122
Q ss_pred -----cCCCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 032292 47 -----SENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 120 (143)
Q Consensus 47 -----~~~~~~fD~v~~d~~~~~~~-~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~ 120 (143)
...-...||+++|+...+|. ..|+. .++-+.|.+++..|.+..+. ..-.|...++
T Consensus 105 ~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~-~~~~~~GaVVV~~Na~~r~~------------------~~~~w~~~~~ 165 (218)
T PF07279_consen 105 APEEVMPGLKGIDFVVVDCKREDFAARVLRA-AKLSPRGAVVVCYNAFSRST------------------NGFSWRSVLR 165 (218)
T ss_pred CHHHHHhhccCCCEEEEeCCchhHHHHHHHH-hccCCCceEEEEeccccCCc------------------CCccHHHhcC
Confidence 01124689999999988888 66664 44445677888888764321 0123445566
Q ss_pred cCCCeeEEEeecCCeeEEEE
Q 032292 121 DDPRVQLSHVALGDGITICR 140 (143)
Q Consensus 121 ~~~~~~~~~lp~~~Gl~~~~ 140 (143)
..+.+.+++||+|.||.+++
T Consensus 166 ~~r~Vrsv~LPIG~GleVt~ 185 (218)
T PF07279_consen 166 GRRVVRSVFLPIGKGLEVTR 185 (218)
T ss_pred CCCceeEEEeccCCCeEEEE
Confidence 67779999999999999987
No 28
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=8.2e-10 Score=83.40 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=68.5
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------ 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------ 46 (143)
+.|+...++...+.+.+..+|||.|+|+|..|..||.++.+.|+
T Consensus 78 IyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 78 IYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred ecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 45666777888888899999999999999999999998877665
Q ss_pred cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 47 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 ~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
....+.||.||+|- .+.+++++.+.+.|+|||.+++-
T Consensus 158 ~~~~~~vDav~LDm--p~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 158 GIDEEDVDAVFLDL--PDPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred cccccccCEEEEcC--CChHHHHHHHHHHhCCCcEEEEE
Confidence 12345899999995 57799999999999999999874
No 29
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.02 E-value=7.5e-11 Score=78.08 Aligned_cols=64 Identities=31% Similarity=0.606 Sum_probs=28.2
Q ss_pred EEEeccccHHHHHHHhhCCCCC--c-------------------------------------cCC-CCceeEEEEcCCcc
Q 032292 24 IEIGVFTGYSLLLTALTIPEDG--Q-------------------------------------SEN-EGSFDYAFVDADKD 63 (143)
Q Consensus 24 LeiG~g~G~~t~~la~~~~~~~--~-------------------------------------~~~-~~~fD~v~~d~~~~ 63 (143)
|||||..|++|+++++++++.+ + +.. .++||++|+|+++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 7999999999999998876533 1 111 47999999999863
Q ss_pred --chHHHHHHHHhcccCCeEEEEecc
Q 032292 64 --NYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 64 --~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
.....++.+.++|+|||+|++||+
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 456688899999999999999984
No 30
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.01 E-value=8.5e-10 Score=70.40 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=45.8
Q ss_pred EEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCc---cchHH
Q 032292 24 IEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADK---DNYCN 67 (143)
Q Consensus 24 LeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~---~~~~~ 67 (143)
||+|||+|..+..+++. +. .. +..+++||+|++.... .+...
T Consensus 1 LdiG~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GG-ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TT-CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHH
T ss_pred CEecCcCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHH
Confidence 89999999999999988 22 11 4567899999987632 46678
Q ss_pred HHHHHHhcccCCeEEEE
Q 032292 68 YHERLMKLLKVGGIAVY 84 (143)
Q Consensus 68 ~~~~~~~~L~~gG~li~ 84 (143)
+++++.++|||||++++
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 89999999999999985
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.00 E-value=7.4e-10 Score=85.32 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=54.9
Q ss_pred HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEEE
Q 032292 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYAF 57 (143)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v~ 57 (143)
.+...+.+.+..+|||||||.|..++++|+..+.... .....+||.|+
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~Iv 132 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIV 132 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEE
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEE
Confidence 3444445678899999999999999999998542111 23456999998
Q ss_pred EcC-----CccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 58 VDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 58 ~d~-----~~~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
+-. ...+|..+|+.+.++|+|||.++++.+...
T Consensus 133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred EEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 753 235788999999999999999999877654
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.98 E-value=2.4e-09 Score=84.25 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=55.0
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADK 62 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~ 62 (143)
.++++|||||||+|+.+..++...+.... +. .++||+|++.+..
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 35689999999999999999876432100 11 5789999986532
Q ss_pred ---cchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 63 ---DNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 63 ---~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
.+....++++.+.|+|||.++++.....
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~ 230 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVID 230 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEec
Confidence 4567889999999999999999865443
No 33
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.97 E-value=3.5e-09 Score=80.34 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=54.2
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------cCCCCceeEEEEcCCc---
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------SENEGSFDYAFVDADK--- 62 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------~~~~~~fD~v~~d~~~--- 62 (143)
...++.+|||||||+|..+..+++..+. ++ ....++||+|++....
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQWL 106 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhhC
Confidence 3456789999999999999999988753 11 1124589999987642
Q ss_pred cchHHHHHHHHhcccCCeEEEEe
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.+....++++.+.|+|||.+++.
T Consensus 107 ~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 107 PDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEE
Confidence 35678899999999999999885
No 34
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.97 E-value=1.7e-09 Score=82.05 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=61.0
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------ 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------ 46 (143)
+-|....++...+.+.++.+|||.|+|+|..|.+|++.+.+.|+
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 45677778888888999999999999999999999999887776
Q ss_pred c----CCCCceeEEEEcCCccchHHHHHHHHhcc-cCCeEEEE
Q 032292 47 S----ENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVY 84 (143)
Q Consensus 47 ~----~~~~~fD~v~~d~~~~~~~~~~~~~~~~L-~~gG~li~ 84 (143)
. ..+..+|.||+|- .+.+.+++.+.+.| ++||+|++
T Consensus 104 ~g~~~~~~~~~DavfLDl--p~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDL--PDPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp G--STT-TTSEEEEEEES--SSGGGGHHHHHHHE-EEEEEEEE
T ss_pred ccccccccCcccEEEEeC--CCHHHHHHHHHHHHhcCCceEEE
Confidence 0 1236799999996 45677889999999 89999976
No 35
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.97 E-value=2.8e-08 Score=75.47 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=57.6
Q ss_pred HHHHHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------cCCCCceeEEEE
Q 032292 7 HGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------SENEGSFDYAFV 58 (143)
Q Consensus 7 ~~~~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------~~~~~~fD~v~~ 58 (143)
+...+..+... .++.+|||+|||+|+.++.+++....... ...+.+||+|++
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVA 185 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEE
Confidence 33444455443 46789999999999999987764322111 011127999998
Q ss_pred cCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 59 DADKDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 59 d~~~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
+.....+...++.+.++|+|||++++..+.
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 876555667888999999999999987654
No 36
>PRK08317 hypothetical protein; Provisional
Probab=98.97 E-value=8.9e-09 Score=76.24 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCc
Q 032292 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGS 52 (143)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~ 52 (143)
...+.......++.+|||+|||+|..+..+++.+++.++ +...++
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 344445556667889999999999999999987632211 123468
Q ss_pred eeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 53 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 53 fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
||+|++... ..+....++.+.+.|+|||.+++.+..+.
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 128 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWD 128 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 999998743 24567789999999999999988765544
No 37
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.96 E-value=3.2e-09 Score=80.65 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=53.3
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------cCCCCceeEEEEcCC---ccchH
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------SENEGSFDYAFVDAD---KDNYC 66 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------~~~~~~fD~v~~d~~---~~~~~ 66 (143)
.++.+|||||||+|..+..+++..+. ++ ....++||+|++... ..+..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~ 106 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAALQWVPEHA 106 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhhhhCCCHH
Confidence 46789999999999999999988653 22 123468999999763 24567
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 032292 67 NYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 67 ~~~~~~~~~L~~gG~li~d 85 (143)
..++++.+.|+|||.+++.
T Consensus 107 ~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 107 DLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred HHHHHHHHhCCCCcEEEEE
Confidence 7899999999999999874
No 38
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=1.7e-08 Score=82.32 Aligned_cols=121 Identities=26% Similarity=0.283 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c-
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S- 47 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~- 47 (143)
.....++..++...+..+|||+|||+|..|..+++.+.+.++ +
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE 317 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence 344556666666667789999999999999999988754333 1
Q ss_pred ---CCCCceeEEEEcCCc---------cc----------------hHHHHHHHHhcccCCeEEEEeccCCCccccCCCCC
Q 032292 48 ---ENEGSFDYAFVDADK---------DN----------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ 99 (143)
Q Consensus 48 ---~~~~~fD~v~~d~~~---------~~----------------~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~ 99 (143)
...++||.|++|+.- .+ ....++.+.++|||||.+++...... +++
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~-----~~E- 391 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH-----PAE- 391 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-----hhh-
Confidence 113579999998521 00 13457788899999999987643321 111
Q ss_pred CCCCcccchHHHHHHHHHHhhcCCCeeEE-----Eeec---CCeeEEEEEc
Q 032292 100 VPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRI 142 (143)
Q Consensus 100 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~-----~lp~---~~Gl~~~~k~ 142 (143)
-...+..|+ ...|+|+.. ++|- .||+.+|+-+
T Consensus 392 --------ne~~v~~~l---~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~ 431 (434)
T PRK14901 392 --------NEAQIEQFL---ARHPDWKLEPPKQKIWPHRQDGDGFFMAVLR 431 (434)
T ss_pred --------HHHHHHHHH---HhCCCcEecCCCCccCCCCCCCCcEEEEEEE
Confidence 112356665 345666533 3453 4999998743
No 39
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.96 E-value=2.8e-09 Score=74.53 Aligned_cols=81 Identities=30% Similarity=0.339 Sum_probs=60.4
Q ss_pred HHHHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCC-CCc----------------------cCCCCceeEEEEcCCc-
Q 032292 8 GQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ----------------------SENEGSFDYAFVDADK- 62 (143)
Q Consensus 8 ~~~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~----------------------~~~~~~fD~v~~d~~~- 62 (143)
.+++..+.. ..+..+|||||||+|..+..+++.... .+. ...+++||+|++....
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 355666664 567899999999999999999765321 000 1346899999987643
Q ss_pred --cchHHHHHHHHhcccCCeEEEEeccC
Q 032292 63 --DNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 63 --~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
.+....++.+.++|+|||++++....
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 35677899999999999999987655
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.95 E-value=4e-09 Score=80.70 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=57.6
Q ss_pred HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEE
Q 032292 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFV 58 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~ 58 (143)
+...+.++|||||||+|..++.+++...+.++ +..+++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 34557789999999999999888877654322 123468999998
Q ss_pred cCC---ccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 59 DAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 59 d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
+.. ..+....++++.++|+|||.+++.++...
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~ 187 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR 187 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 763 23556789999999999999998776543
No 41
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.95 E-value=3.4e-09 Score=78.36 Aligned_cols=80 Identities=28% Similarity=0.312 Sum_probs=57.8
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC------C--------------Cc--------c-----CC
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------D--------------GQ--------S-----EN 49 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~------~--------------~~--------~-----~~ 49 (143)
..|.....+..++...+..+|||+|||+|+.+..+++.... + +. . ..
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc
Confidence 45666666666667777899999999999999988876321 0 00 0 11
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.++||+|++++....+ .+.+.+.|+|||.+++.
T Consensus 142 ~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 142 YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 3689999999865544 34667999999999874
No 42
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.95 E-value=3.6e-09 Score=80.97 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=54.3
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCC---------------------c-----------cCCCCceeEEEEcC-C-
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------Q-----------SENEGSFDYAFVDA-D- 61 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~---------------------~-----------~~~~~~fD~v~~d~-~- 61 (143)
...+..+|||||||+|..+..+++...... . +..+++||+|++.. -
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 455678999999999999999887542100 0 23357899999842 1
Q ss_pred c---cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 62 K---DNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 62 ~---~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
+ .+....++++.++|+|||.+++.+...
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 1 255678999999999999999876643
No 43
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.94 E-value=1.9e-08 Score=73.53 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S 47 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~ 47 (143)
++...++...+...+..+|||+|||+|..++++++..+. ++ .
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh
Confidence 344555566666667789999999999999999876543 22 0
Q ss_pred CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292 48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
.....+|.+++++. ......++.+.++|+|||.+++...
T Consensus 105 ~~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 105 QLAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred hCCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 11234678888754 3456789999999999999988643
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=98.93 E-value=4.5e-09 Score=83.19 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=53.2
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADK 62 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~ 62 (143)
.++.+|||||||+|..+..+++....... +..+++||+|++....
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 45689999999999999999987531100 2345789999985432
Q ss_pred ---cchHHHHHHHHhcccCCeEEEEecc
Q 032292 63 ---DNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 63 ---~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
.+...+++++.++|+|||.+++.+.
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3556789999999999999988543
No 45
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.91 E-value=8.4e-09 Score=79.94 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=53.9
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCccc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADKDN 64 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~~~ 64 (143)
.+.++|||+|||+|..++.+++....... ....++||+|+++.....
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~ 237 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV 237 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH
Confidence 35689999999999999988764221100 112468999999876556
Q ss_pred hHHHHHHHHhcccCCeEEEEeccC
Q 032292 65 YCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 65 ~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
+...++.+.++|+|||.+++..+.
T Consensus 238 l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 238 IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 667888999999999999987654
No 46
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.90 E-value=8.5e-09 Score=77.97 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=51.4
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC----C------------C---c---------cCCCCceeEEEEcCC---ccchH
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE----D------------G---Q---------SENEGSFDYAFVDAD---KDNYC 66 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~----~------------~---~---------~~~~~~fD~v~~d~~---~~~~~ 66 (143)
.++.+|||+|||+|..+..+++.... + . . +..+++||+|++... ..+..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~ 120 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLS 120 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHH
Confidence 35689999999999999888754211 0 0 0 234568999998753 24567
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 032292 67 NYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 67 ~~~~~~~~~L~~gG~li~d~ 86 (143)
..+.++.++|+|||++++..
T Consensus 121 ~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 121 TALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred HHHHHHHHHcCCCeEEEEEe
Confidence 78999999999999999864
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.90 E-value=3.1e-09 Score=78.30 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=60.4
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------ 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------ 46 (143)
+++.++.+...+.. +..+|||+|||+|..+..+++..+....
T Consensus 26 ~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l 103 (202)
T PRK00121 26 LSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL 103 (202)
T ss_pred hcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH
Confidence 45667777777776 6789999999999999999987653100
Q ss_pred c--CCCCceeEEEEcCCc---c--------chHHHHHHHHhcccCCeEEEEe
Q 032292 47 S--ENEGSFDYAFVDADK---D--------NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 ~--~~~~~fD~v~~d~~~---~--------~~~~~~~~~~~~L~~gG~li~d 85 (143)
+ ...++||.|++.... . .+...++.+.++|+|||++++.
T Consensus 104 ~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 104 LDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 1 235679999985311 0 1467899999999999999874
No 48
>PRK04266 fibrillarin; Provisional
Probab=98.89 E-value=9.5e-09 Score=77.17 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHHHHH--HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cC------
Q 032292 8 GQLMAML--LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SE------ 48 (143)
Q Consensus 8 ~~~l~~l--~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~------ 48 (143)
..++..+ +...+..+|||+|||+|+.+..+++.++ .++ ..
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~ 137 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAH 137 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhh
Confidence 3444434 4556778999999999999999999875 232 00
Q ss_pred CCCceeEEEEcCCcc-chHHHHHHHHhcccCCeEEEEe
Q 032292 49 NEGSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 49 ~~~~fD~v~~d~~~~-~~~~~~~~~~~~L~~gG~li~d 85 (143)
..++||+||++.... .....++.+.+.|||||.+++.
T Consensus 138 l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 138 VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 135699999886532 2234578899999999999884
No 49
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.88 E-value=8.6e-09 Score=73.95 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=53.1
Q ss_pred HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeE
Q 032292 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDY 55 (143)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~ 55 (143)
+|...+...+.++|||+|||+|..++.+++..+.... ....++||+
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~ 101 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDL 101 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEE
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeE
Confidence 4444444447899999999999999999998775101 123578999
Q ss_pred EEEcCCc----c----chHHHHHHHHhcccCCeEEEE
Q 032292 56 AFVDADK----D----NYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 56 v~~d~~~----~----~~~~~~~~~~~~L~~gG~li~ 84 (143)
|+++-.. . .....++.+.++|+|||.+++
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 9997421 1 235678888899999998854
No 50
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.87 E-value=7e-09 Score=80.41 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=61.8
Q ss_pred HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCce
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSF 53 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~f 53 (143)
++...+.. ...++|||||||.||.+..|+.+-+.... +. .+.|
T Consensus 106 rl~p~l~~-L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~F 183 (315)
T PF08003_consen 106 RLLPHLPD-LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAF 183 (315)
T ss_pred HHHhhhCC-cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCc
Confidence 34444443 36799999999999999999887543100 22 5789
Q ss_pred eEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccCCCc
Q 032292 54 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 91 (143)
Q Consensus 54 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~~g 91 (143)
|.||+-+- ..+....++++...|++||.+|++.....|
T Consensus 184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 99999873 356778899999999999999998776654
No 51
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.87 E-value=7.5e-09 Score=72.64 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=53.0
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c-C--CCCceeEEEEcC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S-E--NEGSFDYAFVDA 60 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~-~--~~~~fD~v~~d~ 60 (143)
.+..+|||+|||+|..+..+++...+.++ . . ..++||+|++.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 35789999999999999999965443332 1 1 126899999986
Q ss_pred Cc---cchHHHHHHHHhcccCCeEEEEeccC
Q 032292 61 DK---DNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 61 ~~---~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
.. .+....++.+.+.|++||++++.+..
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 42 34557899999999999999886654
No 52
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.86 E-value=2.3e-08 Score=74.19 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=53.1
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cCCCCceeEEEEcCCc---cc
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SENEGSFDYAFVDADK---DN 64 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~~~~~fD~v~~d~~~---~~ 64 (143)
++.+|||+|||+|..+..+++..+.... +..+++||+|++.... .+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 4579999999999999999887653100 2245789999987532 35
Q ss_pred hHHHHHHHHhcccCCeEEEEecc
Q 032292 65 YCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 65 ~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
....++.+.++|+|||.+++...
T Consensus 114 ~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 114 LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeC
Confidence 66789999999999999998643
No 53
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.86 E-value=1.3e-08 Score=75.55 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=50.8
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCcc-
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADKD- 63 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~~- 63 (143)
.+..+|||||||+|.++..+++..++.+. +...++||+|+++....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~ 129 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNM 129 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCcc
Confidence 46679999999999999999988653222 02356799999986321
Q ss_pred ------ch-------HHHHHHHHhcccCCeEEEEe
Q 032292 64 ------NY-------CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 64 ------~~-------~~~~~~~~~~L~~gG~li~d 85 (143)
+. ...++.+.++|+|||.+++.
T Consensus 130 ~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 130 SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 11 34678888999999999984
No 54
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=7.7e-08 Score=78.66 Aligned_cols=84 Identities=23% Similarity=0.230 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cC-
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SE- 48 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~- 48 (143)
..+...++..++...+.++|||+|||+|..|+.+++.+++.++ ..
T Consensus 235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~ 314 (444)
T PRK14902 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH 314 (444)
T ss_pred EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence 3455566766776677789999999999999999988743332 00
Q ss_pred --CCCceeEEEEcCCcc------------------c-------hHHHHHHHHhcccCCeEEEEecc
Q 032292 49 --NEGSFDYAFVDADKD------------------N-------YCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 49 --~~~~fD~v~~d~~~~------------------~-------~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
..++||+|++|+.-. + ....++.+.++|+|||.+++...
T Consensus 315 ~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 315 EKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred chhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 126799999986310 0 12467788899999999987543
No 55
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=7.8e-08 Score=78.33 Aligned_cols=81 Identities=25% Similarity=0.284 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------c-----
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------S----- 47 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~----- 47 (143)
.....++..++...+..+|||+|||+|..|..+++..+. ++ .
T Consensus 230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQW 308 (427)
T ss_pred CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhh
Confidence 344455555666667889999999999999999988753 22 0
Q ss_pred CCCCceeEEEEcCCcc---------------c----------hHHHHHHHHhcccCCeEEEEec
Q 032292 48 ENEGSFDYAFVDADKD---------------N----------YCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~~---------------~----------~~~~~~~~~~~L~~gG~li~d~ 86 (143)
...++||.|++|+.-. . ....++.+.++|+|||.+++..
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1135799999886311 0 1246778889999999998764
No 56
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.85 E-value=1.4e-08 Score=74.45 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=50.5
Q ss_pred HHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEEEcCC
Q 032292 13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~~d~~ 61 (143)
......++.+|||+|||+|..+.++|+.... .+. ....++||+|++...
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 103 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVV 103 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecc
Confidence 3344556899999999999999999975321 000 112357999987642
Q ss_pred c-----cchHHHHHHHHhcccCCeEEEE
Q 032292 62 K-----DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 62 ~-----~~~~~~~~~~~~~L~~gG~li~ 84 (143)
. .....+++.+.++|+|||++++
T Consensus 104 ~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 104 FMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1 2345788999999999998544
No 57
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.84 E-value=1.2e-08 Score=80.10 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=54.0
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCC--Cc--------------------------------cCCCCceeEEEEcCC--
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPED--GQ--------------------------------SENEGSFDYAFVDAD-- 61 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~--~~--------------------------------~~~~~~fD~v~~d~~-- 61 (143)
.+.++|||||||+|+.+..++...... |. .....+||+||+.+.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY 199 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence 456899999999999999887664320 00 012358999998763
Q ss_pred -ccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 62 -KDNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 62 -~~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
..+....++++.+.|+|||.+++......
T Consensus 200 H~~dp~~~L~el~r~LkpGG~Lvletl~i~ 229 (314)
T TIGR00452 200 HRKSPLEHLKQLKHQLVIKGELVLETLVID 229 (314)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEEEEEec
Confidence 24566789999999999999998765443
No 58
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.83 E-value=2.1e-08 Score=82.36 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=55.4
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCC--
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDAD-- 61 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~-- 61 (143)
..++.+|||||||+|..++.+++....... +..+++||+|++...
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 456789999999999999999986532100 223568999998643
Q ss_pred -ccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 62 -KDNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 62 -~~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
..+....++++.+.|+|||.+++.+...
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 2456788999999999999999876543
No 59
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.82 E-value=1.3e-07 Score=76.99 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c---
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S--- 47 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~--- 47 (143)
.....++..++...+..+|||+|||+|..|..+++.++ .++ .
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 34455666666666789999999999999999999876 333 0
Q ss_pred C--CCCceeEEEEcCCc---------cc----------------hHHHHHHHHhcccCCeEEEEecc
Q 032292 48 E--NEGSFDYAFVDADK---------DN----------------YCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 48 ~--~~~~fD~v~~d~~~---------~~----------------~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
. ..++||.|++|+.- .+ ....++.+.++|+|||.+++...
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 0 23569999998520 00 13467788899999999998644
No 60
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.7e-08 Score=78.34 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCC-CCce
Q 032292 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SEN-EGSF 53 (143)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~-~~~f 53 (143)
-++|..+.. ++++|||+|||+|..++..++.-..... ... .++|
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~ 230 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPF 230 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcc
Confidence 345555544 7899999999999999987765332110 112 3699
Q ss_pred eEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 54 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 54 D~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
|+|+.+.-..-.....+.+.++++|||+++++.++
T Consensus 231 DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 231 DVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred cEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 99999874444556788889999999999998876
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.81 E-value=1.8e-08 Score=76.53 Aligned_cols=68 Identities=15% Similarity=0.040 Sum_probs=50.9
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC-CCc----------------------------------cCCCCceeEEEEcCC-
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ----------------------------------SENEGSFDYAFVDAD- 61 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~----------------------------------~~~~~~fD~v~~d~~- 61 (143)
.++.+|||+|||+|..+..+++.... .+. +...++||+|++...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 35689999999999999999886321 000 123568999998753
Q ss_pred --ccchHHHHHHHHhcccCCeEEEEe
Q 032292 62 --KDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 62 --~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
..+...+++++.++|+|||++++-
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 235567899999999999999763
No 62
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=1.2e-07 Score=77.34 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c-
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S- 47 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~- 47 (143)
.....++..++...++.+|||+|||+|..|..+++.+++.+. +
T Consensus 223 d~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 223 GESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE 302 (431)
T ss_pred CHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh
Confidence 345566666777777889999999999999999998754433 1
Q ss_pred CCCCceeEEEEcCCc---------c----------------chHHHHHHHHhcccCCeEEEEecc
Q 032292 48 ENEGSFDYAFVDADK---------D----------------NYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~---------~----------------~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
...++||.|++|+.- . ...+.++.+.++|+|||++++...
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 124679999998521 0 013357788899999999988644
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.80 E-value=1.9e-08 Score=72.49 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cCCCCceeE
Q 032292 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SENEGSFDY 55 (143)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~~~~~fD~ 55 (143)
...+|.......++++|||+|||+|+.+..+++..+. .. ....++||+
T Consensus 7 d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 85 (179)
T TIGR00537 7 DSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKC-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDV 85 (179)
T ss_pred cHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccE
Confidence 3456656556667899999999999999999886541 11 112468999
Q ss_pred EEEcCCcc------------------------chHHHHHHHHhcccCCeEEEEe
Q 032292 56 AFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 56 v~~d~~~~------------------------~~~~~~~~~~~~L~~gG~li~d 85 (143)
|+++.... .+..+++.+.++|+|||.+++-
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 99874210 0345688888999999998763
No 64
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.79 E-value=1.4e-08 Score=78.97 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=55.7
Q ss_pred HHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cCCCCceeEEE
Q 032292 10 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SENEGSFDYAF 57 (143)
Q Consensus 10 ~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~~~~~fD~v~ 57 (143)
-|..|... .+.++|||+|||||..++..++.-..... ....++||+|+
T Consensus 151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvv 230 (295)
T PF06325_consen 151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVV 230 (295)
T ss_dssp HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEE
T ss_pred HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEE
Confidence 34444443 45689999999999999987664221100 22358999999
Q ss_pred EcCCccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 58 VDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
.+.-..-.....+.+.++|+|||+++++.++-
T Consensus 231 ANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 231 ANILADVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp EES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 98766556677778889999999999988763
No 65
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.78 E-value=2.4e-08 Score=73.31 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=49.0
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------------cCCCCceeEEEEcCCc--
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-------------------------------SENEGSFDYAFVDADK-- 62 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-------------------------------~~~~~~fD~v~~d~~~-- 62 (143)
..++.+|||+|||+|..+++||+.... .+. ....++||+|++....
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 456789999999999999999986321 000 1124679999976432
Q ss_pred ---cchHHHHHHHHhcccCCeEEEE
Q 032292 63 ---DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 63 ---~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.....+++.+.++|+|||++++
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1345788999999999998543
No 66
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.78 E-value=3.8e-08 Score=79.20 Aligned_cols=74 Identities=22% Similarity=0.206 Sum_probs=54.7
Q ss_pred HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------cCCCCceeEEEEcCC-----
Q 032292 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------SENEGSFDYAFVDAD----- 61 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------~~~~~~fD~v~~d~~----- 61 (143)
+...++.+|||||||+|..+..+++..+.... ....++||.|++...
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCC
Confidence 34456789999999999999999987542110 112468999986532
Q ss_pred ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 62 KDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 62 ~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
..++..+++.+.++|+|||++++..+.
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 234678899999999999999987654
No 67
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=4.9e-08 Score=76.85 Aligned_cols=69 Identities=26% Similarity=0.355 Sum_probs=50.0
Q ss_pred HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEE
Q 032292 14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAF 57 (143)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~ 57 (143)
.+...+..+|||||||+|+.++.+++..+..+. ....++||+|+
T Consensus 75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii 154 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIF 154 (322)
T ss_pred hcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEE
Confidence 334556789999999999999999987753221 11125799999
Q ss_pred EcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 58 VDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
++....+.+ +.+.+.|+|||.+++.
T Consensus 155 ~~~g~~~ip---~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 155 VTVGVDEVP---ETWFTQLKEGGRVIVP 179 (322)
T ss_pred ECCchHHhH---HHHHHhcCCCCEEEEE
Confidence 987544433 3567899999998774
No 68
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=3e-07 Score=75.26 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCC
Q 032292 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEG 51 (143)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~ 51 (143)
...+...++...+.++|||+|||+|..|..+++.++..++ ....+
T Consensus 238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~ 317 (445)
T PRK14904 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEE 317 (445)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCC
Confidence 3444445555556789999999999999999987654333 01235
Q ss_pred ceeEEEEcCCc---------c----------------chHHHHHHHHhcccCCeEEEEecc
Q 032292 52 SFDYAFVDADK---------D----------------NYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 52 ~fD~v~~d~~~---------~----------------~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
+||.|++|+.- . .....+..+.++|+|||++++...
T Consensus 318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 79999998420 0 012367788899999999998643
No 69
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.76 E-value=2.6e-08 Score=76.45 Aligned_cols=63 Identities=27% Similarity=0.276 Sum_probs=47.3
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCC-C-c-------------------------------cCCCCceeEEEEcCCccch
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPED-G-Q-------------------------------SENEGSFDYAFVDADKDNY 65 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~-~-~-------------------------------~~~~~~fD~v~~d~~~~~~ 65 (143)
+..+|||+|||+|+.+..+++.++.. + . +..+++||+|+.....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 45789999999999999998876531 1 1 3346789999975432
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 032292 66 CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~d 85 (143)
..++++.+.|+|||++++-
T Consensus 162 -~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 162 -CKAEELARVVKPGGIVITV 180 (272)
T ss_pred -CCHHHHHhhccCCCEEEEE
Confidence 2356788999999999863
No 70
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.76 E-value=2.4e-08 Score=74.11 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=51.4
Q ss_pred CEEEEEeccccHHHHHHHhhCCCCC---c--------------------------------cCCCCceeEEEEcC---Cc
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPEDG---Q--------------------------------SENEGSFDYAFVDA---DK 62 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~~~---~--------------------------------~~~~~~fD~v~~d~---~~ 62 (143)
++|||||||+|..+..+++..+... . ....++||+|++.. ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999998764210 0 01245799999753 22
Q ss_pred cchHHHHHHHHhcccCCeEEEEeccC
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
.+...+++.+.++|+|||.+++.+..
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 45678999999999999999987764
No 71
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.75 E-value=4.6e-08 Score=73.50 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=59.0
Q ss_pred HHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCCC----CCc----------------------------cCCCCcee
Q 032292 10 LMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPE----DGQ----------------------------SENEGSFD 54 (143)
Q Consensus 10 ~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~~----~~~----------------------------~~~~~~fD 54 (143)
++...+.. ....+|||||||-|..+.+||+.-.. +.. ....++||
T Consensus 47 ~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 47 YIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFD 126 (243)
T ss_pred hhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCcc
Confidence 44444443 36789999999999999999986421 100 12237999
Q ss_pred EEEEcC---CccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 55 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 55 ~v~~d~---~~~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
+|.+-- +..+....+..+.+++||||++++..+.+.
T Consensus 127 vV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 127 VVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred EEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 999864 335666788999999999999999877643
No 72
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.72 E-value=6.5e-08 Score=70.30 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=52.9
Q ss_pred HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------c-------------CCCCceeEEE
Q 032292 11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------S-------------ENEGSFDYAF 57 (143)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------~-------------~~~~~fD~v~ 57 (143)
...+....+.++|||+|||+|..+..+++...+.++ . ...++||+|+
T Consensus 24 ~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 24 NQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred HHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 333444467889999999999999988877633211 0 1235799999
Q ss_pred EcCCc-------cc-------hHHHHHHHHhcccCCeEEEEe
Q 032292 58 VDADK-------DN-------YCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 58 ~d~~~-------~~-------~~~~~~~~~~~L~~gG~li~d 85 (143)
+++.. .+ ....++.+.+.|+|||++++.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 97531 11 145788889999999999884
No 73
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.72 E-value=4.5e-08 Score=77.07 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=51.6
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------cCCCCceeEEEEcCC---
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------SENEGSFDYAFVDAD--- 61 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~~~~~~fD~v~~d~~--- 61 (143)
+..+|||||||+|..+..+++.... .|. +...++||+|++...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 4469999999999999999864211 000 122468999998652
Q ss_pred ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 62 KDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 62 ~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
..+...+++.+.++|||||.+++..+.
T Consensus 211 v~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 211 VANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 346678899999999999999987543
No 74
>PRK00811 spermidine synthase; Provisional
Probab=98.72 E-value=2.5e-07 Score=71.62 Aligned_cols=68 Identities=28% Similarity=0.290 Sum_probs=50.0
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeEE
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDYA 56 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~v 56 (143)
.+|++||+||||+|..+.++++..+.... ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 47899999999999999998875321100 1225689999
Q ss_pred EEcCCccc------h-HHHHHHHHhcccCCeEEEEe
Q 032292 57 FVDADKDN------Y-CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 57 ~~d~~~~~------~-~~~~~~~~~~L~~gG~li~d 85 (143)
++|..... | .++++.+.+.|+|||++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99963221 1 45678899999999999874
No 75
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.70 E-value=6.4e-08 Score=74.89 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=49.5
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEEEcCCc---
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAFVDADK--- 62 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~~d~~~--- 62 (143)
..++++|||+|||+|..++++++.... .+. ...+++||+|++....
T Consensus 118 ~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 118 TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 346789999999999999999875211 000 1135789999986531
Q ss_pred --cchHHHHHHHHhcccCCeEEEE
Q 032292 63 --DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 63 --~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+....++.+.++|+|||++++
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2456788999999999998654
No 76
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.69 E-value=1.7e-07 Score=68.91 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=53.7
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCC-
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDAD- 61 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~- 61 (143)
..++.+|||+|||+|..+..+++..+..++ +...++||+|++...
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 346789999999999999999988763111 123467999987542
Q ss_pred --ccchHHHHHHHHhcccCCeEEEEecc
Q 032292 62 --KDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 62 --~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
..+....++.+.+.|+|||.+++.+.
T Consensus 117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 34567789999999999999987543
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.69 E-value=1.1e-07 Score=74.14 Aligned_cols=77 Identities=16% Similarity=0.050 Sum_probs=55.1
Q ss_pred HHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------c---CCCCceeEEEE
Q 032292 13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------S---ENEGSFDYAFV 58 (143)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~---~~~~~fD~v~~ 58 (143)
..+...+..+|||||||+|..++.+++..|. .+ . .....+|+|++
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~ 221 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLF 221 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEe
Confidence 3334456789999999999999999999874 21 1 11234798876
Q ss_pred cCCcc-----chHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 59 DADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 59 d~~~~-----~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
..... .....++++.+.|+|||.+++.+..+.
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 54221 124578999999999999988776653
No 78
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.68 E-value=2.2e-07 Score=68.97 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=52.3
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~ 60 (143)
.+..+|||+|||+|..+..+++..+...+ +...++||+|++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 35689999999999999999888752111 11246799998764
Q ss_pred C---ccchHHHHHHHHhcccCCeEEEEecc
Q 032292 61 D---KDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 61 ~---~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
. ..+....++.+.++|+|||.+++-+.
T Consensus 130 ~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 130 GLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 2 24567789999999999999876543
No 79
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.68 E-value=1.1e-08 Score=66.58 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=36.3
Q ss_pred EEEeccccHHHHHHHhhCCCC--------------Cc-----------------------cCCCCceeEEEEcCCc---c
Q 032292 24 IEIGVFTGYSLLLTALTIPED--------------GQ-----------------------SENEGSFDYAFVDADK---D 63 (143)
Q Consensus 24 LeiG~g~G~~t~~la~~~~~~--------------~~-----------------------~~~~~~fD~v~~d~~~---~ 63 (143)
||||||+|..+..+++..+.. ++ ....++||+|++.... .
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999999999886420 00 0112599999987532 3
Q ss_pred chHHHHHHHHhcccCCeEE
Q 032292 64 NYCNYHERLMKLLKVGGIA 82 (143)
Q Consensus 64 ~~~~~~~~~~~~L~~gG~l 82 (143)
+....++.+.++|+|||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 5567889999999999986
No 80
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.68 E-value=2e-07 Score=70.14 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=50.7
Q ss_pred CCCEEEEEeccccHHHHHHHhhCC-CCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIP-EDGQ-----------------------------------SENEGSFDYAFVDADK 62 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~-----------------------------------~~~~~~fD~v~~d~~~ 62 (143)
+..+|||+|||+|..+..+++.+. +.++ .....++|+|++....
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 567999999999999999988753 1222 0122457888765421
Q ss_pred -----cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 63 -----DNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 63 -----~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
.+....++++.+.|+|||.+++.+...
T Consensus 133 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 133 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 123568899999999999999876543
No 81
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.67 E-value=3.5e-07 Score=70.24 Aligned_cols=68 Identities=26% Similarity=0.259 Sum_probs=49.7
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEEE
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYAF 57 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v~ 57 (143)
.+|++||+||||+|..+..+++..+.... ....++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 46889999999999999888765421000 01146899999
Q ss_pred EcCCcc-----c--hHHHHHHHHhcccCCeEEEEe
Q 032292 58 VDADKD-----N--YCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 58 ~d~~~~-----~--~~~~~~~~~~~L~~gG~li~d 85 (143)
+|.... . ..++++.+.+.|+|||++++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 987421 1 246788999999999999875
No 82
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.67 E-value=1.2e-07 Score=75.20 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCcee
Q 032292 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFD 54 (143)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD 54 (143)
..++..+.. ....+|||+|||+|..++.+++..+. .+ ....++||
T Consensus 186 ~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fD 263 (342)
T PRK09489 186 QLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFD 263 (342)
T ss_pred HHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCcc
Confidence 344444432 34568999999999999999988663 11 12357899
Q ss_pred EEEEcCCc--------cchHHHHHHHHhcccCCeEEEE
Q 032292 55 YAFVDADK--------DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 55 ~v~~d~~~--------~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+|+++-.. ......++.+.++|+|||.+++
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 99997422 1235678888999999998854
No 83
>PTZ00146 fibrillarin; Provisional
Probab=98.66 E-value=1e-07 Score=73.86 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=51.5
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c----CCCCceeEEEEcC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S----ENEGSFDYAFVDA 60 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~----~~~~~fD~v~~d~ 60 (143)
.+..+|||+|||+|+++..+|+.+.+.++ + ...++||+||+|.
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 45679999999999999999999864332 1 0235799999998
Q ss_pred CccchH-HHHHHHHhcccCCeEEEEe
Q 032292 61 DKDNYC-NYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 61 ~~~~~~-~~~~~~~~~L~~gG~li~d 85 (143)
...+.. ..+..+.++|||||.+++.
T Consensus 211 a~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 211 AQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCcchHHHHHHHHHHhccCCCEEEEE
Confidence 654433 3455778999999999883
No 84
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.66 E-value=1.6e-07 Score=71.91 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCC
Q 032292 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEG 51 (143)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~ 51 (143)
..+...++...+..+|||+|||+|..|..+++.+.+.+. +...+
T Consensus 60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~ 139 (264)
T TIGR00446 60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVP 139 (264)
T ss_pred HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhcc
Confidence 344444555567789999999999999999998764333 11235
Q ss_pred ceeEEEEcCCcc-------------------------chHHHHHHHHhcccCCeEEEEec
Q 032292 52 SFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 52 ~fD~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
+||.|++|+.-. ...+.++.+.++|+|||+|++..
T Consensus 140 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 140 KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 699999985210 01246777889999999998763
No 85
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.66 E-value=1.4e-07 Score=75.68 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=47.9
Q ss_pred CCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEEcCC
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~d~~ 61 (143)
..+|||+|||+|..++.+++..|. .+ ....++||+|+++-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcC
Confidence 469999999999999999988764 21 011347999999742
Q ss_pred cc--------chHHHHHHHHhcccCCeEEEEe
Q 032292 62 KD--------NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 62 ~~--------~~~~~~~~~~~~L~~gG~li~d 85 (143)
.. .....+..+.++|+|||.+.+-
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 11 1235678888999999988763
No 86
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.65 E-value=1.8e-07 Score=76.95 Aligned_cols=72 Identities=25% Similarity=0.268 Sum_probs=52.6
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------------cCCCCceeEEEEcCCcc-
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------------SENEGSFDYAFVDADKD- 63 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------------~~~~~~fD~v~~d~~~~- 63 (143)
.+.++|||||||+|..+..+++.... .+. +...++||+|++.....
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 35679999999999999999986431 000 12346899999875321
Q ss_pred ----chHHHHHHHHhcccCCeEEEEeccCC
Q 032292 64 ----NYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 64 ----~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
.....++++.++|+|||++++.+..+
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 23567889999999999999876554
No 87
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.64 E-value=1.6e-07 Score=71.09 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=49.7
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCC-CCCc-----------------------------------cCCCCceeEEEEcCC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQ-----------------------------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~-~~~~-----------------------------------~~~~~~fD~v~~d~~ 61 (143)
.+..+|||+|||+|..+..+++.+. +.++ ....+++|+|++...
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 3568999999999999999987542 2222 011245888886532
Q ss_pred c-----cchHHHHHHHHhcccCCeEEEEeccC
Q 032292 62 K-----DNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 62 ~-----~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
. ......++++.+.|+|||.+++.+..
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 1 12346789999999999999886643
No 88
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.64 E-value=1.5e-07 Score=72.88 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHh----hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292 5 TIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------- 46 (143)
Q Consensus 5 ~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------- 46 (143)
+++..++...+. ..++.+|||+|||+|..++.+++..+. .+
T Consensus 103 ~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~ 181 (284)
T TIGR03533 103 SPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL 181 (284)
T ss_pred CchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 345555554433 134679999999999999999987653 11
Q ss_pred --cCCCCceeEEEEcCCc----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292 47 --SENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 --~~~~~~fD~v~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~li~d 85 (143)
....++||+|+++-.- ..|...++.+.++|+|||+++++
T Consensus 182 ~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 182 FAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred hhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1123479999986210 11345577778999999999875
No 89
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.63 E-value=2e-07 Score=68.24 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=50.1
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c---CCCCceeEEEEcC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S---ENEGSFDYAFVDA 60 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~---~~~~~fD~v~~d~ 60 (143)
+..++||||||+|..+..+|+..+.... . ...+++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 5679999999999999999998764211 1 2245899999874
Q ss_pred Ccc-----------chHHHHHHHHhcccCCeEEEEe
Q 032292 61 DKD-----------NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 61 ~~~-----------~~~~~~~~~~~~L~~gG~li~d 85 (143)
... .....++.+.++|+|||.+++.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 211 1246789999999999999763
No 90
>PLN02366 spermidine synthase
Probab=98.63 E-value=4.3e-07 Score=71.14 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=50.8
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cC-CCCceeEE
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SE-NEGSFDYA 56 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~-~~~~fD~v 56 (143)
.+|++||+||||.|..+.++++.-+.... .. ..++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 57899999999999999999876321100 11 14579999
Q ss_pred EEcCCccc-------hHHHHHHHHhcccCCeEEEEe
Q 032292 57 FVDADKDN-------YCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 57 ~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d 85 (143)
++|+.... ..++++.+.+.|+|||+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99975421 245788999999999999764
No 91
>PRK06922 hypothetical protein; Provisional
Probab=98.62 E-value=1.8e-07 Score=79.19 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=54.6
Q ss_pred HHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c--CCCCcee
Q 032292 12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S--ENEGSFD 54 (143)
Q Consensus 12 ~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~--~~~~~fD 54 (143)
..+....++.+|||+|||+|..+..+++..+. +. + ..+++||
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEE
Confidence 34455567899999999999999888876652 11 1 2357899
Q ss_pred EEEEcCCc----------------cchHHHHHHHHhcccCCeEEEEecc
Q 032292 55 YAFVDADK----------------DNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 55 ~v~~d~~~----------------~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
+|++.... .+....++.+.+.|+|||.+++.+.
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99875311 2345678899999999999988654
No 92
>PRK01581 speE spermidine synthase; Validated
Probab=98.61 E-value=1.7e-07 Score=74.75 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=51.2
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------------cCCCC
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------------SENEG 51 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------------~~~~~ 51 (143)
...+|++||+||||+|+.+..+++..+. .+ ....+
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~v-~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYETV-LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 3468999999999999988888765321 11 22356
Q ss_pred ceeEEEEcCCcc-------ch-HHHHHHHHhcccCCeEEEEe
Q 032292 52 SFDYAFVDADKD-------NY-CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 52 ~fD~v~~d~~~~-------~~-~~~~~~~~~~L~~gG~li~d 85 (143)
+||+|++|.... -| .++++.+.+.|+|||++++.
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 899999996422 12 45788999999999999875
No 93
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.60 E-value=2.7e-07 Score=73.18 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=50.3
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCc---
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADK--- 62 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~--- 62 (143)
+..+|||||||+|..+..+++..+. .. +...++||+|++....
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 4579999999999999998887642 11 1235689999986532
Q ss_pred cchHHHHHHHHhcccCCeEEEEe
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.+....++++.+.|+|||.+++-
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEE
Confidence 34567899999999999998763
No 94
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.60 E-value=3.5e-07 Score=67.62 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=49.7
Q ss_pred HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------cCCCCceeEEEEcCCcc
Q 032292 14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------SENEGSFDYAFVDADKD 63 (143)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------~~~~~~fD~v~~d~~~~ 63 (143)
+....++.+|||+|||+|+.+..+++..+. .. +..+++||+|++.+...
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLI 116 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhh
Confidence 334456789999999999999999887542 11 23466899999876421
Q ss_pred -----chHHHHHHHHhcccCCeEEEEeccC
Q 032292 64 -----NYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 64 -----~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
.....++++.+.+ ++++++.+..
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 2345677777776 4567666554
No 95
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.7e-07 Score=71.58 Aligned_cols=75 Identities=21% Similarity=0.206 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCc
Q 032292 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGS 52 (143)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~ 52 (143)
+--++..+..... .+|||+|||.|+.++.+|+..|. .+ ....++
T Consensus 147 S~lLl~~l~~~~~-~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 147 SRLLLETLPPDLG-GKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHHHhCCccCC-CcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 3345555554434 49999999999999999999883 22 122458
Q ss_pred eeEEEEcCCcc----ch----HHHHHHHHhcccCCeEEE
Q 032292 53 FDYAFVDADKD----NY----CNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 53 fD~v~~d~~~~----~~----~~~~~~~~~~L~~gG~li 83 (143)
||+|+++-..+ -. .+.+..+.++|++||-|-
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 99999875321 12 257788889999999774
No 96
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.57 E-value=6e-07 Score=67.41 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhc--CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCC
Q 032292 6 IHGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SEN 49 (143)
Q Consensus 6 ~~~~~l~~l~~~~--~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~ 49 (143)
++-.++..+.... ++.+|||+|||+|..+..+++..+.... ...
T Consensus 72 ~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 72 DTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP 151 (251)
T ss_pred ChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc
Confidence 3344544444432 4569999999999999999988653100 122
Q ss_pred CCceeEEEEcCCc-----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292 50 EGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 50 ~~~fD~v~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.++||+|+++..- ..|...++.+.++|+|||.+++.
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 5789999985310 01235677888999999999885
No 97
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.55 E-value=3.6e-07 Score=67.00 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCcee
Q 032292 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFD 54 (143)
Q Consensus 6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD 54 (143)
..-+++.. +...++.++||+|||.|..+++||+.--+ .+. ...++.||
T Consensus 18 ~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 18 THSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp --HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred CcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 33344433 45567899999999999999999987321 000 12357899
Q ss_pred EEEEcC-----CccchHHHHHHHHhcccCCeEEEEe
Q 032292 55 YAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 55 ~v~~d~-----~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
+|++.. .....+..++.+...++|||++++.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 998743 2234456788889999999998874
No 98
>PRK05785 hypothetical protein; Provisional
Probab=98.54 E-value=7.7e-07 Score=66.72 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=50.9
Q ss_pred HHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCC--Cc------------------------cCCCCceeEEEEcCC-
Q 032292 10 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPED--GQ------------------------SENEGSFDYAFVDAD- 61 (143)
Q Consensus 10 ~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~--~~------------------------~~~~~~fD~v~~d~~- 61 (143)
++..+... .++.+|||+|||||..+..+++..... |. +..+++||+|++...
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l 120 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFAL 120 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChh
Confidence 34444332 357899999999999999998874210 00 455789999998653
Q ss_pred --ccchHHHHHHHHhcccCCe
Q 032292 62 --KDNYCNYHERLMKLLKVGG 80 (143)
Q Consensus 62 --~~~~~~~~~~~~~~L~~gG 80 (143)
..+....++++.++|||..
T Consensus 121 ~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 121 HASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hccCCHHHHHHHHHHHhcCce
Confidence 2456778999999999954
No 99
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.51 E-value=6e-07 Score=68.10 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------c
Q 032292 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------S 47 (143)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~ 47 (143)
.+-+|...+.....++|||+|||+|..++.+|++.++ ++ .
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 4567888888878999999999999999999998664 22 2
Q ss_pred CCCCceeEEEEcCC-----c----------------cchHHHHHHHHhcccCCeEEEE
Q 032292 48 ENEGSFDYAFVDAD-----K----------------DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 48 ~~~~~fD~v~~d~~-----~----------------~~~~~~~~~~~~~L~~gG~li~ 84 (143)
....+||+|+++-. . .+..++++.+..+||+||.+.+
T Consensus 111 ~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 111 LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 23457999998631 0 1233467777899999999976
No 100
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=7.4e-07 Score=65.87 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=55.3
Q ss_pred HHHHHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------
Q 032292 7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------- 46 (143)
Q Consensus 7 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------- 46 (143)
....+..|-. +.+..+.||+|+|+||.|.+++..+...+.
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 3445555543 557789999999999999999977654322
Q ss_pred --------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 47 --------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 --------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.....+||.|++.+.....+ +.+...|++||.+++-
T Consensus 149 vvGDgr~g~~e~a~YDaIhvGAaa~~~p---q~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 149 VVGDGRKGYAEQAPYDAIHVGAAASELP---QELLDQLKPGGRLLIP 192 (237)
T ss_pred EeCCccccCCccCCcceEEEccCccccH---HHHHHhhccCCeEEEe
Confidence 23467899999987655433 4677899999998763
No 101
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.49 E-value=6e-07 Score=59.80 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=47.2
Q ss_pred CCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcCCc
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDADK 62 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~~~ 62 (143)
+.+|||+|||+|..++.+++....... ....++||+|+.+...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 358999999999999999988721100 2457899999997522
Q ss_pred c-----------chHHHHHHHHhcccCCeEEEE
Q 032292 63 D-----------NYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 63 ~-----------~~~~~~~~~~~~L~~gG~li~ 84 (143)
. .+...++.+.++|+|||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 1 245678999999999999976
No 102
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.49 E-value=6.8e-07 Score=66.72 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC------C--------------Cc------------c-CCCC
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------D--------------GQ------------S-ENEG 51 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~------~--------------~~------------~-~~~~ 51 (143)
+...+++.......+..+|||||||+|..+..+++.... + +. + ...+
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCC
Confidence 334455555555556789999999999999888765211 0 00 1 1347
Q ss_pred ceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEec
Q 032292 52 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 52 ~fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
+||+|++... ..+....++.+.+.|+|||.+++..
T Consensus 114 ~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 114 QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 8999988532 2355677899999999999998864
No 103
>PRK14968 putative methyltransferase; Provisional
Probab=98.49 E-value=1.2e-06 Score=62.89 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=50.6
Q ss_pred HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCce
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSF 53 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~f 53 (143)
.++.......+.++|||+|||+|+.+..+++. ..... ...+++|
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 91 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKF 91 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCc
Confidence 34444444467789999999999999999876 21100 0112379
Q ss_pred eEEEEcCCc------------------------cchHHHHHHHHhcccCCeEEEE
Q 032292 54 DYAFVDADK------------------------DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 54 D~v~~d~~~------------------------~~~~~~~~~~~~~L~~gG~li~ 84 (143)
|+|+.+... ..+...++.+.++|+|||.+++
T Consensus 92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999876321 0124468888899999998876
No 104
>PRK14967 putative methyltransferase; Provisional
Probab=98.49 E-value=1e-06 Score=65.74 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=46.9
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEEEEcCCcc--
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYAFVDADKD-- 63 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v~~d~~~~-- 63 (143)
.+..+|||+|||+|..++.+++....... ....++||+|+++....
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCCC
Confidence 34579999999999999998875221110 12346899999973100
Q ss_pred ----------------------chHHHHHHHHhcccCCeEEEE
Q 032292 64 ----------------------NYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 64 ----------------------~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+...++.+.++|++||.+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 023467778899999999986
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.48 E-value=7e-07 Score=69.91 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=47.3
Q ss_pred CEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEEcCCc--
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFVDADK-- 62 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~d~~~-- 62 (143)
.+|||+|||+|..++.+++..+. .+ ....++||+|+++-.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 79999999999999999988653 11 1123479999986200
Q ss_pred --------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292 63 --------------------------DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 --------------------------~~~~~~~~~~~~~L~~gG~li~d 85 (143)
..|...++.+.++|+|||.++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11345677888999999999885
No 106
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.48 E-value=3.1e-07 Score=67.34 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=63.1
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC----CCc--------------------------cCCCCceeEEEEcCCc------
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE----DGQ--------------------------SENEGSFDYAFVDADK------ 62 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~----~~~--------------------------~~~~~~fD~v~~d~~~------ 62 (143)
.-.++||+|||.|..|..||..... +.. ..+.++||+|++..-.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~ 122 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDDA 122 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSSSH
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCCH
Confidence 3479999999999999999988532 000 2357899999987521
Q ss_pred cchHHHHHHHHhcccCCeEEEEeccCC--CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEeecCCeeEEEE
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYDNTLW--GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICR 140 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~lp~~~Gl~~~~ 140 (143)
.+...+++.+...|+|||.+|+-..-- .-.+..+. . ...-.+-|++++.+-+.+++.--..+..-.+++
T Consensus 123 ~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~--------g-a~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 123 EDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAA--------G-AETVLEMLQEHLTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S-----------HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCccc--------c-hHHHHHHHHHHhhheeEEEEcCCCCCCceEeee
Confidence 223446788889999999998743210 00111111 0 233456677777655555554333334344443
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.46 E-value=7.9e-07 Score=68.73 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhh---cCC-CEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------
Q 032292 6 IHGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------- 46 (143)
Q Consensus 6 ~~~~~l~~l~~~---~~~-~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------- 46 (143)
++..++...... .++ .+|||+|||+|..++.++...+. .+
T Consensus 97 ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 97 ETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred ccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh
Confidence 444455544322 233 69999999999999999988753 11
Q ss_pred -cCCCCceeEEEEcCC---------------c-------------cchHHHHHHHHhcccCCeEEEEe
Q 032292 47 -SENEGSFDYAFVDAD---------------K-------------DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 -~~~~~~fD~v~~d~~---------------~-------------~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.....+||+|+++-. + ..|...++.+.++|+|||++++.
T Consensus 176 ~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 176 EPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred ccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 111237999998620 0 02445677888999999999875
No 108
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.45 E-value=2.3e-06 Score=63.22 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhc-CCC-EEEEEeccccHHHHHHHhhCCCCCc------------------------------------c-
Q 032292 7 HGQLMAMLLRLV-NAK-KTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S- 47 (143)
Q Consensus 7 ~~~~l~~l~~~~-~~~-~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~- 47 (143)
..-++..|.+.. ... +|||||||||--+.++|+.+|. -. +
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP 89 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence 344555555543 334 5999999999999999999984 11 1
Q ss_pred --------CCCCceeEEEEcC-Cc----cchHHHHHHHHhcccCCeEEEEeccCC-Ccccc
Q 032292 48 --------ENEGSFDYAFVDA-DK----DNYCNYHERLMKLLKVGGIAVYDNTLW-GGTVA 94 (143)
Q Consensus 48 --------~~~~~fD~v~~d~-~~----~~~~~~~~~~~~~L~~gG~li~d~~~~-~g~~~ 94 (143)
...++||.||+-- -| ......|+.+.++|++||.+++-..+. .|...
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t 150 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT 150 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC
Confidence 1245899999642 11 223457888889999999998876554 34443
No 109
>PRK06202 hypothetical protein; Provisional
Probab=98.44 E-value=7.2e-07 Score=66.77 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=46.5
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC---CCc---------------------------------cCCCCceeEEEEcCC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE---DGQ---------------------------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~---~~~---------------------------------~~~~~~fD~v~~d~~ 61 (143)
.++.+|||+|||+|..+..+++..+. +.+ +..+++||+|++...
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46789999999999999988764321 111 123568999998753
Q ss_pred cc---c--hHHHHHHHHhcccCCeEEEEeccC
Q 032292 62 KD---N--YCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 62 ~~---~--~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
.. + ....++++.++++ |.+++.+..
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 22 1 2457888888887 555555544
No 110
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.43 E-value=1.7e-06 Score=69.69 Aligned_cols=66 Identities=26% Similarity=0.264 Sum_probs=50.0
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcCC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~~ 61 (143)
....+||||||+|..++.+|+..|.... ...++++|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 3468999999999999999999864211 134678999998642
Q ss_pred cc----c-----hHHHHHHHHhcccCCeEEEE
Q 032292 62 KD----N-----YCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 62 ~~----~-----~~~~~~~~~~~L~~gG~li~ 84 (143)
.. . ....++.+.+.|+|||.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 11 1 14678899999999998876
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.43 E-value=9.5e-07 Score=67.39 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=48.4
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADK 62 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~ 62 (143)
.++.+|||+|||+|..++.+++..+. .. +...++||+|+++..-
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 46789999999999999999988753 11 1112689999985210
Q ss_pred -----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292 63 -----------------------------DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 -----------------------------~~~~~~~~~~~~~L~~gG~li~d 85 (143)
..|...++.+.++|+|||++++.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 11345667777999999999883
No 112
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.42 E-value=1.9e-07 Score=61.10 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=40.7
Q ss_pred EEEEeccccHHHHHHHhhCCCC--Cc-----------------------------------cCCCCceeEEEEcCC---c
Q 032292 23 TIEIGVFTGYSLLLTALTIPED--GQ-----------------------------------SENEGSFDYAFVDAD---K 62 (143)
Q Consensus 23 vLeiG~g~G~~t~~la~~~~~~--~~-----------------------------------~~~~~~fD~v~~d~~---~ 62 (143)
|||+|||+|..+..+++.++.. .. +...++||+|++.+. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999887211 11 223579999999443 1
Q ss_pred ---cchHHHHHHHHhcccCCe
Q 032292 63 ---DNYCNYHERLMKLLKVGG 80 (143)
Q Consensus 63 ---~~~~~~~~~~~~~L~~gG 80 (143)
.+....++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 234568899999999998
No 113
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.39 E-value=3.6e-07 Score=69.53 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=51.4
Q ss_pred CEEEEEeccccHHHHHHHhhCCC----CCc--------------------------------cCCCCceeEEEEcCCc--
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPE----DGQ--------------------------------SENEGSFDYAFVDADK-- 62 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~----~~~--------------------------------~~~~~~fD~v~~d~~~-- 62 (143)
++|||+|||+|..+..||+.... +.. ....++||.|++.-..
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevleH 170 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLEH 170 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHHH
Confidence 67999999999999999986432 100 2235679999986432
Q ss_pred -cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 63 -DNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 63 -~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
.+..+.++.+.++|+|||.+++..+..
T Consensus 171 V~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 171 VKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 345667888889999999999876643
No 114
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.39 E-value=2.7e-06 Score=67.06 Aligned_cols=82 Identities=22% Similarity=0.184 Sum_probs=58.1
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC----C--Cc---------------------------cCC
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE----D--GQ---------------------------SEN 49 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~----~--~~---------------------------~~~ 49 (143)
+.|.....+..++...+..+|||+|||+|..++..+..... + .. +..
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~ 245 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS 245 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc
Confidence 45566677777777777789999999999998876553211 0 00 122
Q ss_pred CCceeEEEEcCC-------c-----cchHHHHHHHHhcccCCeEEEE
Q 032292 50 EGSFDYAFVDAD-------K-----DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 50 ~~~fD~v~~d~~-------~-----~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.++||.|++|.. . ..|...++.+.+.|+|||.+++
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 468999999731 1 1256788899999999999876
No 115
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.37 E-value=2.9e-06 Score=64.06 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=55.3
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------------------
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------------------- 46 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------------------- 46 (143)
...++.+|||||.+|..|+.+|+.+.+.-.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 346899999999999999999999865211
Q ss_pred -------------------------cCCCCceeEEEEcC-------Cc--cchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 47 -------------------------SENEGSFDYAFVDA-------DK--DNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 47 -------------------------~~~~~~fD~v~~d~-------~~--~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
......||.|++-. +. ......|..+.++|.|||++|+.-=-|.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWk 213 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWK 213 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchH
Confidence 12356799998643 11 2356789999999999999998654443
No 116
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.37 E-value=8.6e-07 Score=71.68 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=48.4
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c---CCCCceeE
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S---ENEGSFDY 55 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~---~~~~~fD~ 55 (143)
...++++|||+|||+|..++..+..-..... . ...++||+
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 3456799999999999998876543110000 0 11358999
Q ss_pred EEEcCCc------------cchHHHHHHHHhcccCCeEEEEe
Q 032292 56 AFVDADK------------DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 56 v~~d~~~------------~~~~~~~~~~~~~L~~gG~li~d 85 (143)
|++|... ..|..++..+.++|+|||+++.-
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999532 23666677788999999999853
No 117
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.36 E-value=5.2e-06 Score=61.41 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC---CCCCc----------------------------------
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQ---------------------------------- 46 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~---~~~~~---------------------------------- 46 (143)
.|..--.++.|+-..+|+.|+|+|+..|-|++++|..+ ...++
T Consensus 17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID 96 (206)
T ss_dssp -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence 46666778888888899999999999999999998643 22222
Q ss_pred -------cC--CCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 47 -------SE--NEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 47 -------~~--~~~~fD~v~~d~~~--~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
.. ......+|+.|++| .+....++...+++++|+++|+.|....
T Consensus 97 ~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 97 PEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp THHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred HHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecccc
Confidence 11 12455699999876 4567778888899999999999887654
No 118
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.35 E-value=1.7e-06 Score=72.04 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.1
Q ss_pred CCEEEEEeccccHHHHHHHhhCCC
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
+.+|||+|||+|..++.+++..+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~ 162 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN 162 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC
Confidence 468999999999999999987653
No 119
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.33 E-value=2e-06 Score=64.62 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=65.6
Q ss_pred CCEEEEEeccccHHHHHHHhhCCC-CCc-----------------------------cCCCCceeEEEEcCCccchHH--
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------------------------SENEGSFDYAFVDADKDNYCN-- 67 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------------------------~~~~~~fD~v~~d~~~~~~~~-- 67 (143)
-+++||+|||||..+..+-..... .|. ...+++||+|.. ++.-.|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~A-aDVl~YlG~L 204 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVA-ADVLPYLGAL 204 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhh-hhHHHhhcch
Confidence 579999999999887765333211 111 245789999874 33334443
Q ss_pred --HHHHHHhcccCCeEEEEeccCC---CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEe-----------e
Q 032292 68 --YHERLMKLLKVGGIAVYDNTLW---GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV-----------A 131 (143)
Q Consensus 68 --~~~~~~~~L~~gG~li~d~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~l-----------p 131 (143)
.|--+..+|+|||.++|+--.. .+.+..|..+ +..-+.|........+++.+-+ |
T Consensus 205 e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R---------yAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~p 275 (287)
T COG4976 205 EGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR---------YAHSESYVRALLAASGLEVIAIEDTTIRRDAGEP 275 (287)
T ss_pred hhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhh---------hccchHHHHHHHHhcCceEEEeecccchhhcCCC
Confidence 4445569999999999872221 1222222211 1223455555445556655322 4
Q ss_pred cCCeeEEEEEc
Q 032292 132 LGDGITICRRI 142 (143)
Q Consensus 132 ~~~Gl~~~~k~ 142 (143)
+..++.+++|+
T Consensus 276 v~G~L~iark~ 286 (287)
T COG4976 276 VPGILVIARKK 286 (287)
T ss_pred CCCceEEEecC
Confidence 66777777775
No 120
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.33 E-value=4e-06 Score=62.03 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhh----cCCCEEEEEeccccHHHHHHHhhCCC------C---------------C-c-----------c-
Q 032292 6 IHGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPE------D---------------G-Q-----------S- 47 (143)
Q Consensus 6 ~~~~~l~~l~~~----~~~~~vLeiG~g~G~~t~~la~~~~~------~---------------~-~-----------~- 47 (143)
...+++...+.. .++.+|||+|||+|..+..+++.... + . . +
T Consensus 28 ~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 107 (224)
T TIGR01983 28 LRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE 107 (224)
T ss_pred HHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc
Confidence 334555555543 24789999999999999988764321 0 0 0 1
Q ss_pred CCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEEEec
Q 032292 48 ENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 48 ~~~~~fD~v~~d~---~~~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
...++||+|++.. ...+....++.+.+.|++||.+++..
T Consensus 108 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 108 KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 1136899999864 23456678899999999999988754
No 121
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.31 E-value=9.9e-07 Score=66.41 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=52.3
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEEEE
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYAFV 58 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v~~ 58 (143)
.+.+|||||||.|.+...+.+-.+.... +...+++|.|.+
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 3458999999999999999887664211 234577887742
Q ss_pred ----cC-CccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 59 ----DA-DKDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 59 ----d~-~~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
.+ .......+++.+.++|||||.|++-|.-
T Consensus 151 IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 151 IFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 23 3346778899999999999999997754
No 122
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.31 E-value=6.3e-06 Score=60.82 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=48.3
Q ss_pred HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCcee
Q 032292 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFD 54 (143)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD 54 (143)
++..+....+..+|||+|||+|..++.++........ +...++||
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fD 123 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHN 123 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCce
Confidence 4555554456789999999999999964433221100 11234699
Q ss_pred EEEEcCC-ccc-hHHHHHHHH--hcccCCeEEEEe
Q 032292 55 YAFVDAD-KDN-YCNYHERLM--KLLKVGGIAVYD 85 (143)
Q Consensus 55 ~v~~d~~-~~~-~~~~~~~~~--~~L~~gG~li~d 85 (143)
+||+|-. ... +...++.+. .+|+++++++++
T Consensus 124 lV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 124 VVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred EEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 9999975 222 344455554 347899988876
No 123
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.31 E-value=2.2e-06 Score=73.82 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=53.0
Q ss_pred HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEE
Q 032292 14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYA 56 (143)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v 56 (143)
++...++++|||+|||+|..++++++.-..... ....++||+|
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlI 612 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLI 612 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEE
Confidence 444556899999999999999999875221000 0124689999
Q ss_pred EEcCCc--------------cchHHHHHHHHhcccCCeEEEEec
Q 032292 57 FVDADK--------------DNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 57 ~~d~~~--------------~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
++|... .+|...+..+.++|+|||++++..
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 998531 235667888889999999998764
No 124
>PLN02823 spermine synthase
Probab=98.30 E-value=3.1e-06 Score=67.05 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=49.5
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEEE
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYAF 57 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v~ 57 (143)
.+|++||.||+|.|.++.++++..+.... ....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 46899999999999999988775332100 12346899999
Q ss_pred EcCCcc--------c-hHHHHH-HHHhcccCCeEEEEe
Q 032292 58 VDADKD--------N-YCNYHE-RLMKLLKVGGIAVYD 85 (143)
Q Consensus 58 ~d~~~~--------~-~~~~~~-~~~~~L~~gG~li~d 85 (143)
+|.... - -.++++ .+.+.|+|||++++.
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 996321 1 135677 789999999999874
No 125
>PRK03612 spermidine synthase; Provisional
Probab=98.28 E-value=2.9e-06 Score=70.85 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=50.4
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCC-CC------------------------------Cc------------cCCCCce
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIP-ED------------------------------GQ------------SENEGSF 53 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~-~~------------------------------~~------------~~~~~~f 53 (143)
..++++|||||||+|..+..+++.-+ .. .+ ....++|
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 35789999999999999998876522 00 00 1234689
Q ss_pred eEEEEcCCccc--------hHHHHHHHHhcccCCeEEEEe
Q 032292 54 DYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 54 D~v~~d~~~~~--------~~~~~~~~~~~L~~gG~li~d 85 (143)
|+|++|..... ..+.++.+.++|+|||+++++
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99999964221 135788999999999999875
No 126
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.25 E-value=8e-06 Score=62.20 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=20.3
Q ss_pred CCEEEEEeccccHHHHHHHhhCC
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
+.+|||+|||+|..++.+++..+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~ 109 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD 109 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC
Confidence 45899999999999999998765
No 127
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.22 E-value=7.2e-06 Score=51.75 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=46.1
Q ss_pred EEEEEeccccHHHHHHHhhCCCCCc---------------------------------cC--CCCceeEEEEcCCcc---
Q 032292 22 KTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SE--NEGSFDYAFVDADKD--- 63 (143)
Q Consensus 22 ~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~--~~~~fD~v~~d~~~~--- 63 (143)
+++|+|||+|..+..+++....... .. ..++||+|+++....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999988872110000 11 356799999986432
Q ss_pred -chHHHHHHHHhcccCCeEEEEe
Q 032292 64 -NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 64 -~~~~~~~~~~~~L~~gG~li~d 85 (143)
.....++.+.+.+++||++++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 3466788889999999999875
No 128
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.22 E-value=4.8e-06 Score=63.84 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=27.5
Q ss_pred CCceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292 50 EGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 50 ~~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.++||+|++.... ......++.+.+.|+|||++++.
T Consensus 201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5679999986421 22346889999999999999875
No 129
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.18 E-value=1.4e-05 Score=64.95 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCC
Q 032292 5 TIHGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 5 ~~~~~~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
|++-.++..+.. ..+..+|||+|||+|..++.+++..+
T Consensus 236 peTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p 274 (423)
T PRK14966 236 PETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP 274 (423)
T ss_pred ccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC
Confidence 345555555544 33457999999999999999987655
No 130
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.15 E-value=3.6e-06 Score=69.15 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=47.9
Q ss_pred CCEEEEEeccccHHHHHHHhhC-------CCCCc------------------------cCCCCceeEEEEcCCccch---
Q 032292 20 AKKTIEIGVFTGYSLLLTALTI-------PEDGQ------------------------SENEGSFDYAFVDADKDNY--- 65 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~-------~~~~~------------------------~~~~~~fD~v~~d~~~~~~--- 65 (143)
...+||+|||+|..+.+|.+.- +.+.. +..++.||+|++......+
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred eEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhc
Confidence 4678999999999999987661 11111 5678999999876432222
Q ss_pred -HHHHHHHHhcccCCeEEEEecc
Q 032292 66 -CNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 66 -~~~~~~~~~~L~~gG~li~d~~ 87 (143)
-.++-++-|+|||||+++.+..
T Consensus 198 ~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 198 DGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccceeehhhhhhccCceEEecCC
Confidence 1245567799999999987643
No 131
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.12 E-value=6.4e-06 Score=60.08 Aligned_cols=62 Identities=27% Similarity=0.276 Sum_probs=50.1
Q ss_pred EEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCccchHH
Q 032292 22 KTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKDNYCN 67 (143)
Q Consensus 22 ~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~~~~~ 67 (143)
+++|||||.|.-++.+|-..|+... ....++||+|++.|- .....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv-~~l~~ 129 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV-APLDK 129 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS-SSHHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh-cCHHH
Confidence 8999999999999999998875211 246789999999985 45678
Q ss_pred HHHHHHhcccCCeEEEE
Q 032292 68 YHERLMKLLKVGGIAVY 84 (143)
Q Consensus 68 ~~~~~~~~L~~gG~li~ 84 (143)
.++.+.+++++||.+++
T Consensus 130 l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 130 LLELARPLLKPGGRLLA 146 (184)
T ss_dssp HHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 88999999999999965
No 132
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1.9e-05 Score=61.15 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=53.2
Q ss_pred hHHHHHHHHHH-hhcC-CCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCC
Q 032292 5 TIHGQLMAMLL-RLVN-AKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SEN 49 (143)
Q Consensus 5 ~~~~~~l~~l~-~~~~-~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~ 49 (143)
+++-.++..+. .... +.+|||+|||+|..++.+|+..+.... ...
T Consensus 94 ~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~ 173 (280)
T COG2890 94 PDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL 173 (280)
T ss_pred CchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc
Confidence 34555555533 2222 227999999999999999999874111 123
Q ss_pred CCceeEEEEcC-----C----------c-------------cchHHHHHHHHhcccCCeEEEEe
Q 032292 50 EGSFDYAFVDA-----D----------K-------------DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 50 ~~~fD~v~~d~-----~----------~-------------~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.++||+|+++- . + .-|...++.+..+|+|||++++.
T Consensus 174 ~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 174 RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 45899999753 1 0 01233556677999999999875
No 133
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.11 E-value=8.3e-06 Score=58.76 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=45.0
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeE
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDY 55 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~ 55 (143)
..++++|||+|||+|..++.+|+..+.... .....+||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 457899999999999999999887332100 012357999
Q ss_pred EEEc-C--CccchHHHHHHHHhcccCCeEEEE
Q 032292 56 AFVD-A--DKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 56 v~~d-~--~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
|+.. . ....+...++.+..+|+++|.+++
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence 9853 3 234566778888899999887554
No 134
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=4.8e-06 Score=61.62 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=31.4
Q ss_pred CCCCceeEEEEc---CCccchHHHHHHHHhcccCCeEEEE
Q 032292 48 ENEGSFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 48 ~~~~~fD~v~~d---~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
..++++|.|+.. +.+.+..+.+.++.++|||||++++
T Consensus 141 l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 141 LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 357899999754 5677889999999999999999986
No 135
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.09 E-value=2.8e-05 Score=60.62 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=21.4
Q ss_pred CCCEEEEEeccccHHHHHHHhhCC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
++.+|||+|||+|..|..++++++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~ 86 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALR 86 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhc
Confidence 558999999999999999998864
No 136
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.08 E-value=1.5e-05 Score=59.35 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=45.6
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC-CC---------------------------------c---------c-C--CCCc
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE-DG---------------------------------Q---------S-E--NEGS 52 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~---------------------------------~---------~-~--~~~~ 52 (143)
+..+|||+|||.|..+++||+.--. .| . . . ..++
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 5579999999999999999976211 00 0 0 0 1245
Q ss_pred eeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 032292 53 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 53 fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
||.|+-.+. ......+++.+.++|+|||++++.
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 888874432 123456889999999999976554
No 137
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.08 E-value=1.1e-05 Score=59.08 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=56.6
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------cCCCCceeEEEEcCCcc---ch
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------SENEGSFDYAFVDADKD---NY 65 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------~~~~~~fD~v~~d~~~~---~~ 65 (143)
.+..+|||+|||.|....+|.+.-...+. ...+++||.|++.-... +.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P 91 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRP 91 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHH
Confidence 35689999999999999988775322221 35689999999864322 22
Q ss_pred HHHHHHHHhcccCCe--EEEEecc---------CCCccccCCCCCCCCCcccc--hHHHHHHHHHHhh
Q 032292 66 CNYHERLMKLLKVGG--IAVYDNT---------LWGGTVAVPEEQVPDHFRGS--SRQAILDLNRSLA 120 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG--~li~d~~---------~~~g~~~~~~~~~~~~~~~~--~~~~~~~f~~~l~ 120 (143)
...+++ +||-|. ++-|.|. ++.|++.....=.-+|+.+| ..-.++.|.+-..
T Consensus 92 ~~vL~E---mlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 92 DEVLEE---MLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred HHHHHH---HHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 334444 455554 4445454 22566554421112333331 1123777766544
No 138
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.05 E-value=1.9e-05 Score=60.15 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=39.3
Q ss_pred CCceeEEEEcCCc-cchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 032292 50 EGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS 128 (143)
Q Consensus 50 ~~~fD~v~~d~~~-~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 128 (143)
.+++-++.+|++. ......++.+.+.|.|||+|++||....| ..+|+.+|.+.-. +..-
T Consensus 175 ~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~g----------------cr~AvdeF~~~~g----i~~~ 234 (248)
T PF05711_consen 175 IERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPG----------------CRKAVDEFRAEHG----ITDP 234 (248)
T ss_dssp T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHH----------------HHHHHHHHHHHTT------S-
T ss_pred CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChH----------------HHHHHHHHHHHcC----CCCc
Confidence 4678888888875 23346788899999999999999976532 5567888865543 3334
Q ss_pred EeecC
Q 032292 129 HVALG 133 (143)
Q Consensus 129 ~lp~~ 133 (143)
+.++.
T Consensus 235 l~~id 239 (248)
T PF05711_consen 235 LHPID 239 (248)
T ss_dssp -EE-S
T ss_pred cEEec
Confidence 45554
No 139
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.05 E-value=2.3e-05 Score=59.73 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=52.7
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCC-----Cc---------------------------------------cCCCCcee
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPED-----GQ---------------------------------------SENEGSFD 54 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~-----~~---------------------------------------~~~~~~fD 54 (143)
+..++||++||||-.|..+.+.++.. ++ ++.+++||
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 34799999999999999999887641 11 56678899
Q ss_pred EEEEcCCc---cchHHHHHHHHhcccCCeEEEE
Q 032292 55 YAFVDADK---DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 55 ~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~ 84 (143)
...+.... .+..+.++++.|+|||||++.+
T Consensus 180 ~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 180 AYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred eEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 88876543 4567889999999999998874
No 140
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.04 E-value=3e-05 Score=57.46 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=20.5
Q ss_pred cCCCEEEEEeccccHHHHHHHhhC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTI 41 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~ 41 (143)
.++.+|||+|||+|..+..+++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~ 85 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG 85 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC
Confidence 456899999999999999998653
No 141
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.04 E-value=7.8e-05 Score=57.83 Aligned_cols=68 Identities=26% Similarity=0.287 Sum_probs=52.5
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCC-c---------------------------------------cCCCCceeEEE
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDG-Q---------------------------------------SENEGSFDYAF 57 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~-~---------------------------------------~~~~~~fD~v~ 57 (143)
.+|++||-||-|.|..+..+.+..+... . ....++||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4568999999999999999988764211 0 22345899999
Q ss_pred EcCCcc-ch------HHHHHHHHhcccCCeEEEEe
Q 032292 58 VDADKD-NY------CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 58 ~d~~~~-~~------~~~~~~~~~~L~~gG~li~d 85 (143)
+|+... .+ .++++.+.+.|+++|++++.
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 997432 22 57899999999999999986
No 142
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.03 E-value=4.1e-05 Score=54.62 Aligned_cols=72 Identities=8% Similarity=-0.102 Sum_probs=46.1
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEEEcCCccc
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAFVDADKDN 64 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~~d~~~~~ 64 (143)
...+..+|||||||+|..+..+++.... .+. +....+||.|+.+..-..
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 3445679999999999999999887321 000 112235899988754332
Q ss_pred hHHHHHHHHh--cccCCeEEEEecc
Q 032292 65 YCNYHERLMK--LLKVGGIAVYDNT 87 (143)
Q Consensus 65 ~~~~~~~~~~--~L~~gG~li~d~~ 87 (143)
....+..+.+ .+.++|+++++.-
T Consensus 90 ~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 90 STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 2345555553 3458899988754
No 143
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.00 E-value=3.5e-05 Score=57.07 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=45.5
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEEEcCCc---
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAFVDADK--- 62 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~~d~~~--- 62 (143)
..+.++|||+|||+|..+.++++.... .|. ....++||+|++....
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 345789999999999999999875221 000 1113679999864321
Q ss_pred --cchHHHHHHHHhcccCCeEEEEe
Q 032292 63 --DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 --~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.+....+..+.+.+++++++.+.
T Consensus 133 ~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 133 PASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 12335677788888887777664
No 144
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=3.1e-05 Score=59.46 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=57.9
Q ss_pred HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cC
Q 032292 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SE 48 (143)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~ 48 (143)
..++..+....+..+|+|-|||+|..+..+++++.+.|+ ..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 445566667888999999999999999999999987665 12
Q ss_pred CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 49 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 49 ~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+..+|.||+|-. ..+.++.-+.+.|+.+|.-++
T Consensus 174 ks~~aDaVFLDlP--aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 174 KSLKADAVFLDLP--APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccceEEEcCC--ChhhhhhhhHHHhhhcCceEE
Confidence 3678999999964 456667777778888774433
No 145
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.96 E-value=1.6e-05 Score=58.87 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=60.9
Q ss_pred HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC--------CC-Cc--------cCCCCceeEEEEcCC--ccchHHHH
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP--------ED-GQ--------SENEGSFDYAFVDAD--KDNYCNYH 69 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~--------~~-~~--------~~~~~~fD~v~~d~~--~~~~~~~~ 69 (143)
.++..|....+...|-|+|||.+-.+..+..... .+ .. |..+++.|+++..-. ..+|..++
T Consensus 62 ~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi 141 (219)
T PF05148_consen 62 VIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFI 141 (219)
T ss_dssp HHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHH
Confidence 4455555554557999999999988765532210 00 00 667899999987654 36899999
Q ss_pred HHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 032292 70 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS 128 (143)
Q Consensus 70 ~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 128 (143)
.++.|.||+||.+.+-++-.+- ...+.|.+.+..- +|...
T Consensus 142 ~EA~RvLK~~G~L~IAEV~SRf------------------~~~~~F~~~~~~~-GF~~~ 181 (219)
T PF05148_consen 142 REANRVLKPGGILKIAEVKSRF------------------ENVKQFIKALKKL-GFKLK 181 (219)
T ss_dssp HHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHHHCT-TEEEE
T ss_pred HHHHheeccCcEEEEEEecccC------------------cCHHHHHHHHHHC-CCeEE
Confidence 9999999999999887765321 1368888887643 55544
No 146
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=4.6e-05 Score=56.86 Aligned_cols=64 Identities=27% Similarity=0.302 Sum_probs=48.9
Q ss_pred CCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCC-CCc-eeEEEEcCCccc
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SEN-EGS-FDYAFVDADKDN 64 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~-~~~-fD~v~~d~~~~~ 64 (143)
+++++|||+|.|.-++.+|-..|+... ... ..+ ||+|.+.|- ..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-a~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-AS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc-cc
Confidence 689999999999999999966664211 111 123 999999984 45
Q ss_pred hHHHHHHHHhcccCCeEEEE
Q 032292 65 YCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 65 ~~~~~~~~~~~L~~gG~li~ 84 (143)
....++.+.+++++||.+++
T Consensus 147 L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 147 LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hHHHHHHHHHhcccCCcchh
Confidence 66778889999999998853
No 147
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.96 E-value=2.5e-05 Score=56.96 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=40.4
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------c----CCCCceeEEEEcCCc---cch
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------S----ENEGSFDYAFVDADK---DNY 65 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------~----~~~~~fD~v~~d~~~---~~~ 65 (143)
.+..+|||+|||+|..+..+++....... . ..+++||+|++.... .+.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 35679999999999999988765321100 1 224689999987532 344
Q ss_pred HHHHHHHHhcccC
Q 032292 66 CNYHERLMKLLKV 78 (143)
Q Consensus 66 ~~~~~~~~~~L~~ 78 (143)
...++++.+.+++
T Consensus 92 ~~~l~e~~r~~~~ 104 (194)
T TIGR02081 92 EEILDEMLRVGRH 104 (194)
T ss_pred HHHHHHHHHhCCe
Confidence 5567777666554
No 148
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.93 E-value=4e-05 Score=57.24 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=44.3
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------------------c---CCCCc
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------------------S---ENEGS 52 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------------------~---~~~~~ 52 (143)
+..+|||+|||.|..+++||+.--. .|. . ...+.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 4579999999999999999976210 000 0 01246
Q ss_pred eeEEEEcC-----CccchHHHHHHHHhcccCCeEEE
Q 032292 53 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 53 fD~v~~d~-----~~~~~~~~~~~~~~~L~~gG~li 83 (143)
||+|+-.+ .......+++.+.++|+|||+++
T Consensus 117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 88888433 22334678999999999998644
No 149
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.93 E-value=5.5e-05 Score=54.45 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=48.4
Q ss_pred HHHHHHHHhhc-----CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c
Q 032292 8 GQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S 47 (143)
Q Consensus 8 ~~~l~~l~~~~-----~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~ 47 (143)
-++...+.+.. ++.+|||+||++|.++-++++...+.++ .
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhcc
Confidence 34444444433 3489999999999999999988722111 1
Q ss_pred CCCCceeEEEEcCCc--------cch------HHHHHHHHhcccCCeEEEEe
Q 032292 48 ENEGSFDYAFVDADK--------DNY------CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~--------~~~------~~~~~~~~~~L~~gG~li~d 85 (143)
...++||+|++|+.. ..+ ...+..+.++|++||.+++-
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 123689999999831 111 12445556899999988763
No 150
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.93 E-value=5.1e-05 Score=57.03 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=54.2
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------cCCCCceeEEEEcCCccch---
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------SENEGSFDYAFVDADKDNY--- 65 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------~~~~~~fD~v~~d~~~~~~--- 65 (143)
...+.++|||||.|+|..+..++++.|. .+ ...+. +|++++..-.+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~-~D~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV-ADVYLLRHVLHDWSDE 174 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS-ESEEEEESSGGGS-HH
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCC-CcceeeccHhhhhccccccccccccccHHhhhcc-ccceeeehhhhhcchH
Confidence 3456789999999999999999999885 22 11233 9999987644443
Q ss_pred --HHHHHHHHhcccCC--eEEEEeccCCC
Q 032292 66 --CNYHERLMKLLKVG--GIAVYDNTLWG 90 (143)
Q Consensus 66 --~~~~~~~~~~L~~g--G~li~d~~~~~ 90 (143)
...++++.+.|+|| |.|++.+.+..
T Consensus 175 ~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 175 DCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp HHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 34788999999999 98887766643
No 151
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.91 E-value=0.00032 Score=53.61 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=68.4
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCC-Cc-----------------------cCCCCceeEEEEcC---CccchHHHHHH
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPED-GQ-----------------------SENEGSFDYAFVDA---DKDNYCNYHER 71 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~-~~-----------------------~~~~~~fD~v~~d~---~~~~~~~~~~~ 71 (143)
+..++||||.|-|..|..|+..+.+- +. ...+.+||+|-+-- ........++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~ 173 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRD 173 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHHH
Confidence 56789999999999999999887641 00 22346899997632 12356778999
Q ss_pred HHhcccCCeEEEEeccC-CCcccc-------CCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 032292 72 LMKLLKVGGIAVYDNTL-WGGTVA-------VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS 128 (143)
Q Consensus 72 ~~~~L~~gG~li~d~~~-~~g~~~-------~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 128 (143)
+.+.|+|+|++++.=++ |+-.|. .|.+..+-.-.+ ....+..|. .+-.--+|+..
T Consensus 174 i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~-~E~~v~~l~-~v~~p~GF~v~ 236 (265)
T PF05219_consen 174 IRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGAT-FEEQVSSLV-NVFEPAGFEVE 236 (265)
T ss_pred HHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCc-HHHHHHHHH-HHHHhcCCEEE
Confidence 99999999999876443 222222 222112222222 555677777 44444466653
No 152
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.90 E-value=6.8e-06 Score=61.17 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhc-----CCCEEEEEeccccHHHHHHHhhCCCC----------------------Cc------------c
Q 032292 7 HGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPED----------------------GQ------------S 47 (143)
Q Consensus 7 ~~~~l~~l~~~~-----~~~~vLeiG~g~G~~t~~la~~~~~~----------------------~~------------~ 47 (143)
+-.||..+.... +..+.||.|+|.|-.|-.+....-+. .+ .
T Consensus 38 S~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~ 117 (218)
T PF05891_consen 38 SRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT 117 (218)
T ss_dssp HHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--
T ss_pred HHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc
Confidence 345666655442 45799999999999998653322110 00 1
Q ss_pred CCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe-ccCCCcc-ccCCCCC
Q 032292 48 ENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD-NTLWGGT-VAVPEEQ 99 (143)
Q Consensus 48 ~~~~~fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d-~~~~~g~-~~~~~~~ 99 (143)
....+||+||+-=. -.+...+++++...|+|||+|++- |+.-.|. +.++++.
T Consensus 118 P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds 176 (218)
T PF05891_consen 118 PEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS 176 (218)
T ss_dssp --TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT
T ss_pred CCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC
Confidence 22468999997421 135678999999999999999885 6666664 6665543
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=97.87 E-value=0.00023 Score=53.92 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=43.8
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC--CCc------------------------------cCCCCceeEEEEcCCc----
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE--DGQ------------------------------SENEGSFDYAFVDADK---- 62 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~--~~~------------------------------~~~~~~fD~v~~d~~~---- 62 (143)
...+|||+|||+|..++.+++.++. ... ....++||+|+++-.-
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 4689999999999999999876431 111 1124689999986310
Q ss_pred -----c------chHHHHHHHHhcccCCeEEE
Q 032292 63 -----D------NYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 63 -----~------~~~~~~~~~~~~L~~gG~li 83 (143)
. .....++.+.+++++|+.|+
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 0 12346777778777777644
No 154
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.86 E-value=8.9e-05 Score=57.10 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhh------cCCCEEEEEeccccHHHHHHHhhCCC
Q 032292 5 TIHGQLMAMLLRL------VNAKKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 5 ~~~~~~l~~l~~~------~~~~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
|++-+++...... .++..+||+|||+|..++.++..+++
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~ 172 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQ 172 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCC
Confidence 4555555555432 24568999999999999999999885
No 155
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.84 E-value=5.1e-05 Score=57.28 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCC-EEEEEeccccHHHHHHHhhCCCC-Cc-------------------------------cC--CCCce
Q 032292 9 QLMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPED-GQ-------------------------------SE--NEGSF 53 (143)
Q Consensus 9 ~~l~~l~~~~~~~-~vLeiG~g~G~~t~~la~~~~~~-~~-------------------------------~~--~~~~f 53 (143)
.++..++...... .++|+|||+|..++.+|....+- +. +. .+++.
T Consensus 22 dw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 22 DWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESV 101 (261)
T ss_pred HHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcce
Confidence 4666777766655 78999999998888888775420 00 22 26889
Q ss_pred eEEEEcCCc--cchHHHHHHHHhcccCCe-EEEE
Q 032292 54 DYAFVDADK--DNYCNYHERLMKLLKVGG-IAVY 84 (143)
Q Consensus 54 D~v~~d~~~--~~~~~~~~~~~~~L~~gG-~li~ 84 (143)
|+|.+--.. -+..++++.+.++||+.| ++.+
T Consensus 102 DlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 102 DLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 999864322 355778899999999977 6655
No 156
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.81 E-value=0.00013 Score=60.42 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=57.9
Q ss_pred HHHHHHHHHH--hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292 6 IHGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------- 46 (143)
Q Consensus 6 ~~~~~l~~l~--~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------- 46 (143)
....+...++ ...++.+|||++++.|.=|..+|..+...|.
T Consensus 98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~ 177 (470)
T PRK11933 98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG 177 (470)
T ss_pred HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh
Confidence 3344444444 4467789999999999999999998865443
Q ss_pred cCCCCceeEEEEcCCc-------cc------h------------HHHHHHHHhcccCCeEEEEeccC
Q 032292 47 SENEGSFDYAFVDADK-------DN------Y------------CNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 47 ~~~~~~fD~v~~d~~~-------~~------~------------~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
....+.||.|++|+.= .+ + .+.++.+.++|||||+||.....
T Consensus 178 ~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 178 AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 0123579999999620 00 0 23566778999999999886443
No 157
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.80 E-value=6e-05 Score=55.38 Aligned_cols=64 Identities=27% Similarity=0.283 Sum_probs=47.8
Q ss_pred CEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEEcCC-
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFVDAD- 61 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~d~~- 61 (143)
..+||||||.|...+.+|+..|+... ...++++|.|++.-.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38899999999999999999886311 134689999998642
Q ss_pred ---cc-------chHHHHHHHHhcccCCeEEEE
Q 032292 62 ---KD-------NYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 62 ---~~-------~~~~~~~~~~~~L~~gG~li~ 84 (143)
+. -....++.+.+.|+|||.|.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 11 124688899999999998865
No 158
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.80 E-value=0.00021 Score=52.19 Aligned_cols=75 Identities=8% Similarity=-0.072 Sum_probs=49.6
Q ss_pred HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c-C-C-CC
Q 032292 11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S-E-N-EG 51 (143)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~-~-~-~~ 51 (143)
...+.......++||++||+|..++.++.+...... . . . ..
T Consensus 41 f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~ 120 (189)
T TIGR00095 41 FNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPT 120 (189)
T ss_pred HHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCC
Confidence 333333346789999999999999998876432111 1 1 1 12
Q ss_pred ceeEEEEcCCc--cchHHHHHHHH--hcccCCeEEEEe
Q 032292 52 SFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD 85 (143)
Q Consensus 52 ~fD~v~~d~~~--~~~~~~~~~~~--~~L~~gG~li~d 85 (143)
.||+||.|-.. ..+...++.+. .+|+++|++++.
T Consensus 121 ~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 121 FDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred CceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 48999998643 33455565554 579999999886
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.75 E-value=0.00028 Score=53.15 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=49.3
Q ss_pred CEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEEcC--
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFVDA-- 60 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~d~-- 60 (143)
..+||||||.|-+.+.+|+..|+... -..+++.|-|++.-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999999886321 12345888888753
Q ss_pred -Cc------c--chHHHHHHHHhcccCCeEEEEe
Q 032292 61 -DK------D--NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 61 -~~------~--~~~~~~~~~~~~L~~gG~li~d 85 (143)
|+ . -+...++.+.+.|+|||.|-+-
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 32 1 1356889999999999999763
No 160
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.75 E-value=0.0002 Score=58.71 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=45.4
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------c------CCCCceeEEEEcC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------S------ENEGSFDYAFVDA 60 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~------~~~~~fD~v~~d~ 60 (143)
.+..+|||+|||+|..++.+|+.... -+. . ...++||+|++|.
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 35579999999999999999987531 000 0 1135799999986
Q ss_pred CccchHHHHHHHHhcccCCeEEEEe
Q 032292 61 DKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 61 ~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.-....+.++.+.+ +++++++.++
T Consensus 376 Pr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 376 PRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred CCcChHHHHHHHHh-cCCCeEEEEE
Confidence 54334455554444 6888888764
No 161
>PRK00536 speE spermidine synthase; Provisional
Probab=97.73 E-value=0.00014 Score=55.91 Aligned_cols=65 Identities=11% Similarity=-0.010 Sum_probs=51.0
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c-CCCCceeEEEEcCCc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S-ENEGSFDYAFVDADK 62 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~-~~~~~fD~v~~d~~~ 62 (143)
.+|++||-||.|-|..+..+.+.-. ... . ...++||+|++|...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~ 149 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEP 149 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCC
Confidence 5799999999999999999988732 111 1 123789999999642
Q ss_pred cchHHHHHHHHhcccCCeEEEEe
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d 85 (143)
-.+.++.+.+.|+|||+++.+
T Consensus 150 --~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 150 --DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred --ChHHHHHHHHhcCCCcEEEEC
Confidence 256778899999999999875
No 162
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.71 E-value=0.00051 Score=50.17 Aligned_cols=71 Identities=28% Similarity=0.367 Sum_probs=47.4
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCC---Cc---------------------------------cCCCCceeEEEE----
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPED---GQ---------------------------------SENEGSFDYAFV---- 58 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~---~~---------------------------------~~~~~~fD~v~~---- 58 (143)
++.+|||+|||.|.....|++.--++ |. ....++||+|.=
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 45699999999999988887652211 11 133567888762
Q ss_pred cC-----Cc--cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 59 DA-----DK--DNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 59 d~-----~~--~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
|+ +. .....|++.+.++|+|||++++-...|
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 22 11 222346778889999999999865554
No 163
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.68 E-value=0.00012 Score=54.78 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=46.9
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC----CC-------------------------ccCCCCceeEEEE--------cCC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE----DG-------------------------QSENEGSFDYAFV--------DAD 61 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~----~~-------------------------~~~~~~~fD~v~~--------d~~ 61 (143)
.+.-|||||||+|.|+..+...--. +. .++.+++||-+++ +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~ 129 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD 129 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence 3789999999999998876543110 00 0677899999874 333
Q ss_pred cc------chHHHHHHHHhcccCCeEEEEe
Q 032292 62 KD------NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 62 ~~------~~~~~~~~~~~~L~~gG~li~d 85 (143)
+. ....+|..++.+|++|+..++.
T Consensus 130 ~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 130 KSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 32 1234677888999999998875
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.63 E-value=0.00043 Score=49.79 Aligned_cols=82 Identities=20% Similarity=0.094 Sum_probs=58.0
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC-CCCCc-----------------------------------
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI-PEDGQ----------------------------------- 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~----------------------------------- 46 (143)
.|+-.++-|...+.-.++.-|||+|.|||..|..+.+.. +++..
T Consensus 32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 345556666666666678899999999999999977654 32211
Q ss_pred cCCCCceeEEEEcCCccc-----hHHHHHHHHhcccCCeEEEE
Q 032292 47 SENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 47 ~~~~~~fD~v~~d~~~~~-----~~~~~~~~~~~L~~gG~li~ 84 (143)
......||.|++.-...+ -.+.++.+...|+.||.++-
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 223456999998654322 34678899999999998874
No 165
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.63 E-value=0.00036 Score=54.72 Aligned_cols=68 Identities=10% Similarity=-0.040 Sum_probs=43.2
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------cCCCCceeEEEEcCCcc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------SENEGSFDYAFVDADKD 63 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~~~~~~fD~v~~d~~~~ 63 (143)
.++.+|||+|||+|..++.+|+.... -+. ....++||+|++|-...
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 35789999999999999999975321 000 11234799999996533
Q ss_pred chHHHHHHHHhcccCCeEEEEe
Q 032292 64 NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 64 ~~~~~~~~~~~~L~~gG~li~d 85 (143)
.....+...+..++|++++.+.
T Consensus 252 G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 252 GIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred CccHHHHHHHHHcCCCeEEEEE
Confidence 3322333334456787777653
No 166
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.62 E-value=0.00019 Score=54.56 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=49.6
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCC-ceeEE
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEG-SFDYA 56 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~-~fD~v 56 (143)
.+|++||-||-|.|..+..+.+.-+.... ....+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 36999999999999999998766432100 22344 89999
Q ss_pred EEcCCccc-------hHHHHHHHHhcccCCeEEEEec
Q 032292 57 FVDADKDN-------YCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 57 ~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d~ 86 (143)
++|..... -.+.++.+.+.|+|||+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99975321 1478999999999999998753
No 167
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.57 E-value=0.00032 Score=57.21 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=45.1
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------c---CCCCceeEEEEcC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------S---ENEGSFDYAFVDA 60 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~---~~~~~fD~v~~d~ 60 (143)
.+..+|||+|||+|..++++|+.... -+. + ...++||+|++|.
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 35589999999999999999986431 000 0 1134699999997
Q ss_pred Cccc-hHHHHHHHHhcccCCeEEEE
Q 032292 61 DKDN-YCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 ~~~~-~~~~~~~~~~~L~~gG~li~ 84 (143)
.... ....++.+. .+++++++.+
T Consensus 371 Pr~G~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 371 PRKGCAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred CCCCCCHHHHHHHH-hcCCCEEEEE
Confidence 5433 455566544 4789887765
No 168
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.54 E-value=0.00014 Score=57.42 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.7
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCC
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
+.+.+.|||+|||||..++.-|++..
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA 83 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA 83 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc
Confidence 45789999999999999999888753
No 169
>PHA03411 putative methyltransferase; Provisional
Probab=97.48 E-value=0.00087 Score=51.83 Aligned_cols=24 Identities=8% Similarity=-0.058 Sum_probs=20.3
Q ss_pred cCCCEEEEEeccccHHHHHHHhhC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTI 41 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~ 41 (143)
....+|||+|||+|..++.+++..
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~ 86 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRC 86 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhC
Confidence 346799999999999999887764
No 170
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.47 E-value=0.00027 Score=51.43 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=50.7
Q ss_pred HHHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cC
Q 032292 9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SE 48 (143)
Q Consensus 9 ~~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~ 48 (143)
.+...|... ....++||+=||||..++..+.+-..... ..
T Consensus 31 alFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~ 110 (183)
T PF03602_consen 31 ALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK 110 (183)
T ss_dssp HHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc
Confidence 455555555 67899999999999999986655322111 12
Q ss_pred CCCceeEEEEcCCc--cc-hHHHHHHHH--hcccCCeEEEEec
Q 032292 49 NEGSFDYAFVDADK--DN-YCNYHERLM--KLLKVGGIAVYDN 86 (143)
Q Consensus 49 ~~~~fD~v~~d~~~--~~-~~~~~~~~~--~~L~~gG~li~d~ 86 (143)
...+||+||+|-.- .. +...++.+. ++|+++|+|++..
T Consensus 111 ~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 111 KGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp CTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 46899999999632 23 366777776 8999999999863
No 171
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.47 E-value=0.0012 Score=53.45 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=54.3
Q ss_pred HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCcee
Q 032292 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFD 54 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD 54 (143)
....+.++||++=|+||..|+..|..-..... .....+||
T Consensus 213 ~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 213 GELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred hhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 33345899999999999999998876431111 12345999
Q ss_pred EEEEcCC------------ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 55 YAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 55 ~v~~d~~------------~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
+|++|-. ..+|.+.+..+.++|+|||++++.+..
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9999952 135777788889999999999886543
No 172
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.44 E-value=0.00022 Score=53.67 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=20.0
Q ss_pred CCCEEEEEeccccHHHHHHHhh
Q 032292 19 NAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~ 40 (143)
+.++|||+|||||..|.++++.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ 96 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK 96 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc
Confidence 5679999999999999999886
No 173
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.44 E-value=0.0015 Score=48.85 Aligned_cols=80 Identities=24% Similarity=0.311 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------------
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------------ 46 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------------ 46 (143)
.|.--+++..+ ...++.+||..|||.|+-..|||+.--+ -|.
T Consensus 23 ~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 23 NPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp THHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred CHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 34444555552 3455679999999999999999986211 000
Q ss_pred ---------cCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEE
Q 032292 47 ---------SENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 47 ---------~~~~~~fD~v~~d~-----~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+...++||+|+=.+ ......++.+.+.++|+|||.++.
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred EEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 11224799998433 224456788999999999999443
No 174
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.41 E-value=0.0012 Score=53.23 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=48.5
Q ss_pred CEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c-CC-CCceeEEEEcCCccch
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S-EN-EGSFDYAFVDADKDNY 65 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~-~~-~~~fD~v~~d~~~~~~ 65 (143)
.+|||++||+|..++.+|...+.... . .. .++||+|++|.- ...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-Gs~ 137 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-GSP 137 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC-CCc
Confidence 58999999999999999877552100 0 11 467999999964 344
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 032292 66 CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~d 85 (143)
..+++.+...+++||++.+.
T Consensus 138 ~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 138 APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEE
Confidence 56778878889999999886
No 175
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.38 E-value=0.00097 Score=52.53 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.8
Q ss_pred CCCEEEEEeccccHHHHHHHhh
Q 032292 19 NAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~ 40 (143)
++.+|||+|||+|..++.+++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~ 165 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE 165 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC
Confidence 4679999999999999999875
No 176
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00088 Score=49.59 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=50.8
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCc--
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADK-- 62 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~-- 62 (143)
.+..+|+|+|+..|.|+..+++.+.+.++ .....++|+|.+|...
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~ 123 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNT 123 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCc
Confidence 35799999999999999999999876432 1234457999999753
Q ss_pred ------cchH------HHHHHHHhcccCCeEEEEe
Q 032292 63 ------DNYC------NYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 ------~~~~------~~~~~~~~~L~~gG~li~d 85 (143)
+++. ..++.+..+|++||.+++-
T Consensus 124 ~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 124 SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 1221 2456667999999999885
No 177
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.35 E-value=0.0017 Score=49.15 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=48.6
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC-------C------Cc-------------------------cCCCCceeEEEEc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE-------D------GQ-------------------------SENEGSFDYAFVD 59 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~-------~------~~-------------------------~~~~~~fD~v~~d 59 (143)
.+..+|||.-+|-||.++..+++-.. + ++ .+.+++||+|+-|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 35789999999999999997766320 0 00 4567889999987
Q ss_pred CCc-----cch-HHHHHHHHhcccCCeEEE
Q 032292 60 ADK-----DNY-CNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 60 ~~~-----~~~-~~~~~~~~~~L~~gG~li 83 (143)
-.- +-| .++++++.+.|+|||.+.
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 421 223 357889999999999985
No 178
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.31 E-value=0.0015 Score=52.48 Aligned_cols=67 Identities=10% Similarity=-0.025 Sum_probs=43.3
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------cCCCCceeEEEEcCCcc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------SENEGSFDYAFVDADKD 63 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~~~~~~fD~v~~d~~~~ 63 (143)
.++.+|||+|||+|..++.+|..... -+. ....++||+|++|-.-.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 35689999999999999999865321 000 01124699999996432
Q ss_pred c-hHHHHHHHHhcccCCeEEEEe
Q 032292 64 N-YCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 64 ~-~~~~~~~~~~~L~~gG~li~d 85 (143)
. ....++.+. .++|++++.+.
T Consensus 312 G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 312 GIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCcHHHHHHHH-hcCCCeEEEEE
Confidence 2 234444443 57898888764
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.31 E-value=0.0011 Score=55.41 Aligned_cols=66 Identities=21% Similarity=0.100 Sum_probs=50.0
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC-
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA- 60 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~- 60 (143)
....+||||||.|-.++.+|+..|+... ...++++|-|++.-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4578899999999999999999886321 23467899998854
Q ss_pred --Cc--c------chHHHHHHHHhcccCCeEEEE
Q 032292 61 --DK--D------NYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 --~~--~------~~~~~~~~~~~~L~~gG~li~ 84 (143)
|. . -....++.+.+.|+|||.|-+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 21 1 124578899999999998865
No 180
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.21 E-value=0.0014 Score=50.31 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC------CCCc---------cCCCCceeEEEEcCC--ccchHHHHHH
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP------EDGQ---------SENEGSFDYAFVDAD--KDNYCNYHER 71 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~------~~~~---------~~~~~~fD~v~~d~~--~~~~~~~~~~ 71 (143)
.++..+-...+...|-|+|||.+-.+..--..+. .+.+ |..+++.|+++.... ..++...+.+
T Consensus 170 ~ii~~ik~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kE 249 (325)
T KOG3045|consen 170 VIIRKIKRRPKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKE 249 (325)
T ss_pred HHHHHHHhCcCceEEEecccchhhhhhccccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHH
Confidence 4555555555567889999998876641111100 0000 567889999876643 2578889999
Q ss_pred HHhcccCCeEEEEeccC
Q 032292 72 LMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 72 ~~~~L~~gG~li~d~~~ 88 (143)
+.+.|++||.+-+..+-
T Consensus 250 a~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 250 ANRILKPGGLLYIAEVK 266 (325)
T ss_pred HHHHhccCceEEEEehh
Confidence 99999999999887664
No 181
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.20 E-value=0.0029 Score=52.38 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=67.7
Q ss_pred hcCCCEEEEEeccccHHHHHHHhh-------CCCCCc----------------------cCCCCceeEEEEcCCccc---
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALT-------IPEDGQ----------------------SENEGSFDYAFVDADKDN--- 64 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~-------~~~~~~----------------------~~~~~~fD~v~~d~~~~~--- 64 (143)
...-.+|+|..+|.|-.++.|.+. +|..+. +..+.+||+|+.++-.+.
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~ 442 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKD 442 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcc
Confidence 345689999999999999988654 111111 456789999998864333
Q ss_pred ---hHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEeecC------Ce
Q 032292 65 ---YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG------DG 135 (143)
Q Consensus 65 ---~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~lp~~------~G 135 (143)
....+-++-|.|||||.+++.|... ....++.....+ ++++.+.-.. ..
T Consensus 443 rC~~~~illEmDRILRP~G~~iiRD~~~------------------vl~~v~~i~~~l----rW~~~~~d~e~g~~~~Ek 500 (506)
T PF03141_consen 443 RCEMEDILLEMDRILRPGGWVIIRDTVD------------------VLEKVKKIAKSL----RWEVRIHDTEDGPDGPEK 500 (506)
T ss_pred cccHHHHHHHhHhhcCCCceEEEeccHH------------------HHHHHHHHHHhC----cceEEEEecCCCCCCCce
Confidence 3345666679999999999865431 333456655554 4555554333 56
Q ss_pred eEEEEE
Q 032292 136 ITICRR 141 (143)
Q Consensus 136 l~~~~k 141 (143)
+++|+|
T Consensus 501 iL~~~K 506 (506)
T PF03141_consen 501 ILICQK 506 (506)
T ss_pred EEEEEC
Confidence 788776
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.19 E-value=0.00062 Score=52.37 Aligned_cols=39 Identities=10% Similarity=-0.192 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
++...+.+...+...+..+|||||||+|..|..+++..+
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~ 65 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA 65 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC
Confidence 444444444445556778999999999999999998754
No 183
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.08 E-value=0.00087 Score=51.14 Aligned_cols=39 Identities=13% Similarity=-0.078 Sum_probs=31.3
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI 41 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~ 41 (143)
+++...+.+...+...+..+|||||||+|..|..+++..
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~ 51 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA 51 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC
Confidence 455666666666666678899999999999999999873
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.08 E-value=0.00065 Score=55.95 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=41.6
Q ss_pred CCEEEEEeccccHHHHHHHhhCCC---CCc------------------------------------cCCCCceeEEEEcC
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPE---DGQ------------------------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~---~~~------------------------------------~~~~~~fD~v~~d~ 60 (143)
.+.|+|+|||+|..+...+++... ..+ -...++.|+|++.-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 468999999999998776665411 000 12356899998742
Q ss_pred -----CccchHHHHHHHHhcccCCeEEE
Q 032292 61 -----DKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 61 -----~~~~~~~~~~~~~~~L~~gG~li 83 (143)
+.+-.++.++...+.|+|||+++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 23345677877789999999986
No 185
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.08 E-value=0.0029 Score=51.04 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=49.3
Q ss_pred CEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcCCcc
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDADKD 63 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~~~~ 63 (143)
-+|||.-||+|..++.+++..+.... .....+||+|++|. ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 48999999999999999987531001 11235799999998 34
Q ss_pred chHHHHHHHHhcccCCeEEEEe
Q 032292 64 NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 64 ~~~~~~~~~~~~L~~gG~li~d 85 (143)
....+++.+.+.+++||+|.+.
T Consensus 125 s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CcHHHHHHHHHhcccCCEEEEE
Confidence 4467889999999999999876
No 186
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.05 E-value=0.0014 Score=48.19 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=24.5
Q ss_pred CCCceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292 49 NEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 49 ~~~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d 85 (143)
..++||+||+.--. ..-...++.+.+.|+|||+|++-
T Consensus 133 ~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 133 PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp ----EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 35789999997632 22345788889999999999874
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.01 E-value=0.0012 Score=50.23 Aligned_cols=39 Identities=13% Similarity=-0.092 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
++...+-+...+...+..+|||||||+|..|..+++..+
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~ 52 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK 52 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC
Confidence 344444444444556778999999999999999998764
No 188
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.0062 Score=44.74 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=51.5
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCc-
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADK- 62 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~- 62 (143)
.+..+|||+||..|.|+....+...+.|. ..++.+.|.|++|..+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapn 147 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPN 147 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCC
Confidence 35789999999999999988888755443 2345789999998532
Q ss_pred ------cchHHHHHH-------HHhcccCCeEEEEeccCCCc
Q 032292 63 ------DNYCNYHER-------LMKLLKVGGIAVYDNTLWGG 91 (143)
Q Consensus 63 ------~~~~~~~~~-------~~~~L~~gG~li~d~~~~~g 91 (143)
.++...++. ....++|+|.+++. +|.|
T Consensus 148 aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g 187 (232)
T KOG4589|consen 148 ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG 187 (232)
T ss_pred CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence 122333333 34788999999984 5665
No 189
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.98 E-value=0.014 Score=43.06 Aligned_cols=113 Identities=23% Similarity=0.206 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------- 46 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------- 46 (143)
+|..-..++.|+-..+|..|+|+|+-.|-|++++|..+-.-|+
T Consensus 54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~ 133 (237)
T COG3510 54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIA 133 (237)
T ss_pred CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHH
Confidence 3445556777777789999999999999999999876432221
Q ss_pred ---c--CCCCceeEEEEcCCcc--chHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHh
Q 032292 47 ---S--ENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL 119 (143)
Q Consensus 47 ---~--~~~~~fD~v~~d~~~~--~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l 119 (143)
. ...-+-=||..|++|+ +.+..++...++|.-|-++++.|..-.+.-. + ..|.+....-..++++|++.-
T Consensus 134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~-~--~~p~~~g~gP~~AVe~ylr~~ 210 (237)
T COG3510 134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG-P--VLPWRFGGGPYEAVEAYLREF 210 (237)
T ss_pred HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC-c--ccchhcCCChHHHHHHHHHhC
Confidence 0 1111122556677664 3455677777999999999888776554321 1 112211111345778776543
No 190
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.96 E-value=0.0045 Score=47.73 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=28.2
Q ss_pred CCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 032292 49 NEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 49 ~~~~fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
..+.||+|||.-- ...-...++.+.+.|+|||+|++-
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4567999998742 233356788889999999999874
No 191
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.95 E-value=0.018 Score=43.37 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=48.0
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC-CC--------------------------------c------------c---CCC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE-DG--------------------------------Q------------S---ENE 50 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~--------------------------------~------------~---~~~ 50 (143)
+..+||..|||.|.-+.|||..--. .| . + ...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4579999999999999999976211 00 0 0 112
Q ss_pred CceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 032292 51 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 51 ~~fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
++||+|+-.+. .....++.+.+.++|+|||.++.-..
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 57999885542 22345688899999999998876433
No 192
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.84 E-value=0.0051 Score=47.47 Aligned_cols=35 Identities=40% Similarity=0.641 Sum_probs=28.2
Q ss_pred CCceeEE----EEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 50 EGSFDYA----FVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 50 ~~~fD~v----~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.++||.| |+|.. .+..++++.+.++|||||+.|=-
T Consensus 163 ~~~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 163 KGSFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred CCcccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEEec
Confidence 4689998 46663 56788999999999999988743
No 193
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.81 E-value=0.0022 Score=49.88 Aligned_cols=70 Identities=24% Similarity=0.362 Sum_probs=47.3
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c--CCCCceeEE
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S--ENEGSFDYA 56 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~--~~~~~fD~v 56 (143)
...+.++||++=|.||..++..+..-..... . ...++||+|
T Consensus 120 ~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 120 KYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp HHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred HHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 3446799999999999999986654221100 0 124689999
Q ss_pred EEcCCc---------cchHHHHHHHHhcccCCeEEEEe
Q 032292 57 FVDADK---------DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 57 ~~d~~~---------~~~~~~~~~~~~~L~~gG~li~d 85 (143)
++|-.. .+|.+.+..+.++|+|||+|++-
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999531 35777888899999999998753
No 194
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.78 E-value=0.0058 Score=45.87 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=49.6
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~ 60 (143)
.+..+||-+|..+|..-..++...+++|. ...-+..|+||.|-
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV 151 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDV 151 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecC
Confidence 45689999999999999999999886665 22346999999997
Q ss_pred CccchH-HHHHHHHhcccCCeEEEE
Q 032292 61 DKDNYC-NYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 ~~~~~~-~~~~~~~~~L~~gG~li~ 84 (143)
...+-. -....+...||+||.+++
T Consensus 152 aQp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 152 AQPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred CChHHHHHHHHHHHhhccCCcEEEE
Confidence 765444 355667789999998875
No 195
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.73 E-value=0.014 Score=43.75 Aligned_cols=70 Identities=21% Similarity=0.383 Sum_probs=51.9
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEEcCC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~d~~ 61 (143)
.+..+||++|-|-|...-.+-++-|. -. ...++.||=|+-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 57899999999999988877555332 11 245678999999986
Q ss_pred ccch---HHHHHHHHhcccCCeEEEEeccC
Q 032292 62 KDNY---CNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 62 ~~~~---~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
...| .+..+.+.++|||+|++-+-|-+
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 5444 45677888999999999665443
No 196
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.69 E-value=0.01 Score=41.12 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=35.4
Q ss_pred HHHHHHHHhh----cCCCEEEEEeccccHHHHHHHhhCCCCCccCCCCceeEEEEcCCc
Q 032292 8 GQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADK 62 (143)
Q Consensus 8 ~~~l~~l~~~----~~~~~vLeiG~g~G~~t~~la~~~~~~~~~~~~~~fD~v~~d~~~ 62 (143)
.+++..+... .++..|+|+|||.||.+..++..+++ ......++-+|.+.
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~-----~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCN-----SSPNLRVLGIDCNE 63 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHh-----cCCCCeEEEEECCc
Confidence 3455555444 67889999999999999999996653 12345666677654
No 197
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0081 Score=43.86 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
+++.++|||||+|+.+..+++...+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~ 67 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGP 67 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCC
Confidence 4899999999999999999998764
No 198
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.011 Score=43.22 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=50.3
Q ss_pred HHHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCC-
Q 032292 9 QLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENE- 50 (143)
Q Consensus 9 ~~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~- 50 (143)
.+...+.. .....++||+=+|+|..++..+.+-...+. +...
T Consensus 32 alFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~ 111 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT 111 (187)
T ss_pred HHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC
Confidence 45555555 367899999999999999987766322111 1223
Q ss_pred -CceeEEEEcCCcc--chHHHHHHH----HhcccCCeEEEEe
Q 032292 51 -GSFDYAFVDADKD--NYCNYHERL----MKLLKVGGIAVYD 85 (143)
Q Consensus 51 -~~fD~v~~d~~~~--~~~~~~~~~----~~~L~~gG~li~d 85 (143)
++||+||+|-.-. -+....... ..+|+|+|.+++.
T Consensus 112 ~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 112 REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 3599999996432 222222222 2789999999986
No 199
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.015 Score=46.58 Aligned_cols=85 Identities=22% Similarity=0.292 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------- 46 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------- 46 (143)
+.....+...++...+..+|||+-++.|-=|..+|..+.+.+.
T Consensus 141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 3455566666777778899999999999999999999875222
Q ss_pred c---CCCCceeEEEEcCC---------ccc----------------hHHHHHHHHhcccCCeEEEEeccC
Q 032292 47 S---ENEGSFDYAFVDAD---------KDN----------------YCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 47 ~---~~~~~fD~v~~d~~---------~~~----------------~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
+ ...++||.|++|+. +.+ -.+.++.+.++|||||+|+++..-
T Consensus 221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 0 11225999999962 000 013566778999999999987543
No 200
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.016 Score=46.18 Aligned_cols=83 Identities=23% Similarity=0.223 Sum_probs=63.4
Q ss_pred CcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-----C--------Cc----------------------
Q 032292 2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----D--------GQ---------------------- 46 (143)
Q Consensus 2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-----~--------~~---------------------- 46 (143)
+++|..++.+..|++..+++.|||==||||...+.... ++. + ++
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 47899999999999999999999999999998887543 221 1 00
Q ss_pred cCCCCceeEEEEcCC-------cc-c----hHHHHHHHHhcccCCeEEEEe
Q 032292 47 SENEGSFDYAFVDAD-------KD-N----YCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 ~~~~~~fD~v~~d~~-------~~-~----~~~~~~~~~~~L~~gG~li~d 85 (143)
+..+.++|.|..|-. +. . |.+.++.+.+.|++||+++|-
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 333446999999842 11 1 667888999999999999873
No 201
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.54 E-value=0.0038 Score=48.74 Aligned_cols=38 Identities=13% Similarity=-0.053 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI 41 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~ 41 (143)
++.....+...+...+..+|||||||+|..|..+++..
T Consensus 21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~ 58 (294)
T PTZ00338 21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA 58 (294)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC
Confidence 44445555555556677899999999999999998764
No 202
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.41 E-value=0.0082 Score=42.50 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=31.8
Q ss_pred CCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 032292 48 ENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 48 ~~~~~fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
..+++||+|++... ..+....++++.++|||||.+++.+.
T Consensus 40 ~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 45678999998653 24567889999999999999987654
No 203
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.37 E-value=0.0088 Score=44.20 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=49.5
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCcee
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFD 54 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD 54 (143)
.+.+...|+|+=-|.||+|..++..+.+.|+ .......|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 3456789999999999999999999876554 12345566
Q ss_pred EEEEcCC---------ccch-HHHHHHHHhcccCCeEEEEec
Q 032292 55 YAFVDAD---------KDNY-CNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 55 ~v~~d~~---------~~~~-~~~~~~~~~~L~~gG~li~d~ 86 (143)
+++.... +..+ ...+..+.+.|||||++++.+
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 6664211 1122 346778889999999887643
No 204
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.013 Score=44.41 Aligned_cols=67 Identities=24% Similarity=0.160 Sum_probs=51.3
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCC------Cc--------------------------cCCCCceeEEEEcCCccch
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPED------GQ--------------------------SENEGSFDYAFVDADKDNY 65 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~------~~--------------------------~~~~~~fD~v~~d~~~~~~ 65 (143)
.+.+.+||||+.||-.|-.+.+.-... |. ....+..|++++|...-..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFISL 157 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFISL 157 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhhH
Confidence 367899999999999999988762210 11 1123478999999887777
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 032292 66 CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~ 84 (143)
...+..+..++++++-++.
T Consensus 158 ~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 158 KLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HHHHHHHHHhcCCCceEEE
Confidence 7888999999999998764
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.017 Score=44.32 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=26.3
Q ss_pred HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC
Q 032292 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
-+-..+...+..+|||||+|.|..|..|++....
T Consensus 21 kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~ 54 (259)
T COG0030 21 KIVEAANISPGDNVLEIGPGLGALTEPLLERAAR 54 (259)
T ss_pred HHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCe
Confidence 3344444556789999999999999999988653
No 206
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.026 Score=44.55 Aligned_cols=34 Identities=35% Similarity=0.707 Sum_probs=27.4
Q ss_pred CCceeEE----EEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 50 EGSFDYA----FVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 50 ~~~fD~v----~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+.||.| |||.. .+..++++.+...|+|||+.+=
T Consensus 257 ~~~~d~VvTcfFIDTa-~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 257 AGSYDVVVTCFFIDTA-HNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred CCccceEEEEEEeech-HHHHHHHHHHHHhccCCcEEEe
Confidence 3579988 46664 4678899999999999999984
No 207
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.30 E-value=0.011 Score=46.89 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=24.2
Q ss_pred CceeEEEEcCCc-------cchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~-------~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+||+|-+--.. ......++.+..+|+|||++|.
T Consensus 144 ~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp S-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 589999765432 1234578889999999999986
No 208
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.28 E-value=0.023 Score=44.24 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=27.5
Q ss_pred CCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 032292 50 EGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 50 ~~~fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.++||+||+..- .......++.+.+.|+|||+|++-
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 468999998542 223456888999999999999764
No 209
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.20 E-value=0.016 Score=46.66 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=54.3
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCC--Cc---------------------------------cCCCCceeEEEE-c
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPED--GQ---------------------------------SENEGSFDYAFV-D 59 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~--~~---------------------------------~~~~~~fD~v~~-d 59 (143)
...++..++++|||.|-.+..++..-... |. +..+..||.+.. +
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34466789999999999999988664321 11 466788999854 4
Q ss_pred C--CccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 60 A--DKDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 60 ~--~~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
. ...+....++++.+.++|||+.+..+..
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 3 3456778899999999999999976543
No 210
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.11 E-value=0.0036 Score=47.47 Aligned_cols=66 Identities=17% Similarity=0.052 Sum_probs=48.3
Q ss_pred CCEEEEEeccccHHHHHHHhhC-CC---------------CCc----------------cCCCCceeEEEEcC---Cccc
Q 032292 20 AKKTIEIGVFTGYSLLLTALTI-PE---------------DGQ----------------SENEGSFDYAFVDA---DKDN 64 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~-~~---------------~~~----------------~~~~~~fD~v~~d~---~~~~ 64 (143)
-..++||||+-|+.+..+.... .. ++. ++.++++|+|+..- |..+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 4688999999999988865432 11 000 45578999998764 3345
Q ss_pred hHHHHHHHHhcccCCeEEEEe
Q 032292 65 YCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 65 ~~~~~~~~~~~L~~gG~li~d 85 (143)
.+..+.++...|||.|.++..
T Consensus 153 LPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 153 LPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred CchHHHHHHHhcCCCccchhH
Confidence 677888999999999999863
No 211
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.01 E-value=0.025 Score=44.86 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=22.8
Q ss_pred CceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~-------~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+||+|-+--. ......++..+.++|+|||++|-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 33888854311 11223467888999999999985
No 212
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.94 E-value=0.11 Score=43.49 Aligned_cols=38 Identities=13% Similarity=-0.105 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhhc-------CCCEEEEEeccccHHHHHHHhhCC
Q 032292 5 TIHGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 5 ~~~~~~l~~l~~~~-------~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
+...++|..++... ...+|||.+||+|...+.+++.++
T Consensus 10 ~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~ 54 (524)
T TIGR02987 10 PDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNE 54 (524)
T ss_pred HHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHH
Confidence 44555665544221 346999999999999988877653
No 213
>PRK04148 hypothetical protein; Provisional
Probab=95.91 E-value=0.014 Score=40.43 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCCCEEEEEeccccH-HHHHHHhhCCCCCccCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 7 HGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~-~t~~la~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
-+++|.......+..+|||||||+|. .+..|++. .+|++.+|.+.. ..+.+.+. +-..+.+
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-----------G~~ViaIDi~~~----aV~~a~~~---~~~~v~d 65 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-----------GFDVIVIDINEK----AVEKAKKL---GLNAFVD 65 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-----------CCEEEEEECCHH----HHHHHHHh---CCeEEEC
Confidence 34555554444456899999999997 66666632 268999887643 23333221 3345666
Q ss_pred ccC
Q 032292 86 NTL 88 (143)
Q Consensus 86 ~~~ 88 (143)
|++
T Consensus 66 Dlf 68 (134)
T PRK04148 66 DLF 68 (134)
T ss_pred cCC
Confidence 665
No 214
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.87 E-value=0.034 Score=43.15 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c-C
Q 032292 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S-E 48 (143)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~-~ 48 (143)
...+...++...+..+|||+.++.|.=|..+|..+...+. + .
T Consensus 73 sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~ 152 (283)
T PF01189_consen 73 SSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK 152 (283)
T ss_dssp HHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH
T ss_pred ccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc
Confidence 3445555556667789999999999999999999885454 1 1
Q ss_pred CCCceeEEEEcCC---------ccc--h--------------HHHHHHHHhcc----cCCeEEEEec
Q 032292 49 NEGSFDYAFVDAD---------KDN--Y--------------CNYHERLMKLL----KVGGIAVYDN 86 (143)
Q Consensus 49 ~~~~fD~v~~d~~---------~~~--~--------------~~~~~~~~~~L----~~gG~li~d~ 86 (143)
....||.|++|+. +.+ + .+.++.+.+.+ +|||++++..
T Consensus 153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 2346999999962 000 0 12566778999 9999999863
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.87 E-value=0.022 Score=44.31 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~ 40 (143)
+....+++..++...+..+|+|-.||+|...+.+.+.
T Consensus 31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~ 67 (311)
T PF02384_consen 31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEY 67 (311)
T ss_dssp -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHh
Confidence 3456688888887777789999999999988877664
No 216
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.84 E-value=0.093 Score=41.03 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=55.6
Q ss_pred HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC--CCc---------------------------------------cCC
Q 032292 11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE--DGQ---------------------------------------SEN 49 (143)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~--~~~---------------------------------------~~~ 49 (143)
+..|.....|-+||||.||.|..-+-.....+. ... ...
T Consensus 127 i~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l 206 (311)
T PF12147_consen 127 IARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL 206 (311)
T ss_pred HHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc
Confidence 334444457899999999999887777766664 111 122
Q ss_pred CCceeEEEEcCCccc------hHHHHHHHHhcccCCeEEEEeccCCCcc
Q 032292 50 EGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVYDNTLWGGT 92 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~------~~~~~~~~~~~L~~gG~li~d~~~~~g~ 92 (143)
....+++++.+-.+- ....+..+.+.+.|||++|.-+-.|+-.
T Consensus 207 ~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 207 DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 345688887764321 2235777789999999999987777643
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.77 E-value=0.031 Score=41.42 Aligned_cols=72 Identities=19% Similarity=0.155 Sum_probs=39.1
Q ss_pred HHhhcCCCEEEEEeccccHHHHHHHhhCCCC---Cc------------------------------------cCCC----
Q 032292 14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPED---GQ------------------------------------SENE---- 50 (143)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~---~~------------------------------------~~~~---- 50 (143)
.+.+.+....+|||||.|...+..|...+-. |. ...+
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 3455567889999999999888777554421 11 1111
Q ss_pred ----CceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEe
Q 032292 51 ----GSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 51 ----~~fD~v~~d~~~--~~~~~~~~~~~~~L~~gG~li~d 85 (143)
..-|+||++... ......+.+....||+|..||.-
T Consensus 117 ~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 234888887542 23334566677889999988764
No 218
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.0096 Score=42.79 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=45.9
Q ss_pred CCCEEEEEecc-ccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEEE
Q 032292 19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYAF 57 (143)
Q Consensus 19 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v~ 57 (143)
.+++|||+|.| +|.+++.+|...++... ......||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 56899999987 57788888877765322 12346899998
Q ss_pred E-cCCc-cc-hHHHHHHHHhcccCCeEEEE
Q 032292 58 V-DADK-DN-YCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 58 ~-d~~~-~~-~~~~~~~~~~~L~~gG~li~ 84 (143)
+ |+-. .+ .....+.+..+|+|.|.-++
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 6 4422 23 34567778899999997654
No 219
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.48 E-value=0.069 Score=38.59 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=54.4
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCC------------c------------------------
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG------------Q------------------------ 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~------------~------------------------ 46 (143)
+.|.-+..|..++...+...+||-=||+|...+..|....... .
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 5677888888999888889999999999999877654432211 1
Q ss_pred ---------cCCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEE
Q 032292 47 ---------SENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 47 ---------~~~~~~fD~v~~d~~~-----------~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+...+++|.|+.|-.- .-|...++.+.+++++..++++
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 2245789999998521 1255667788899999666655
No 220
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.024 Score=45.49 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=43.9
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC--CCc------------------------------------c-CCCCceeEEEE
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE--DGQ------------------------------------S-ENEGSFDYAFV 58 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~--~~~------------------------------------~-~~~~~fD~v~~ 58 (143)
..|++|||+|.|.|.....+-..+|. ++. + ...+.|+++++
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 36899999999999776655454543 111 1 22456777765
Q ss_pred cC------CccchHHHHHHHHhcccCCeEEEE
Q 032292 59 DA------DKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 59 d~------~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.. ........++.++.+++|||.||+
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 32 111223478889999999999876
No 221
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.26 E-value=0.05 Score=43.57 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=42.6
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCC-----c----------------------------cCCCCceeEEEEcCCc---
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDG-----Q----------------------------SENEGSFDYAFVDADK--- 62 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~-----~----------------------------~~~~~~fD~v~~d~~~--- 62 (143)
+.+.|||+|||+|..+...|.+-.... . -.++++.|+|++.--.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 678999999999999998777643210 0 1356788988875311
Q ss_pred --cchHHHHHHHHhcccCCeEEE
Q 032292 63 --DNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 63 --~~~~~~~~~~~~~L~~gG~li 83 (143)
+..++.+-.+.+.|+|.|-..
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCccc
Confidence 122232334459999999764
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.24 E-value=0.064 Score=42.88 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=43.6
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC-----CCc-------------------c-C-CCCceeEEEEcCCccchHHHHHH
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE-----DGQ-------------------S-E-NEGSFDYAFVDADKDNYCNYHER 71 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~-----~~~-------------------~-~-~~~~fD~v~~d~~~~~~~~~~~~ 71 (143)
.+..++|||||++|-+|-.+++.-.. .+. . . ..+++|++++|.. .......+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-e~P~rva~l 288 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-EKPARVAEL 288 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-cCHHHHHHH
Confidence 46789999999999999999876321 000 1 1 1668999999975 334566677
Q ss_pred HHhcccCC
Q 032292 72 LMKLLKVG 79 (143)
Q Consensus 72 ~~~~L~~g 79 (143)
+.++|..|
T Consensus 289 m~~Wl~~g 296 (357)
T PRK11760 289 MAQWLVNG 296 (357)
T ss_pred HHHHHhcC
Confidence 77888776
No 223
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.19 E-value=0.042 Score=40.31 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHhhc---CCCEEEEEeccccHHHHHHHhh
Q 032292 4 LTIHGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~---~~~~vLeiG~g~G~~t~~la~~ 40 (143)
.+..+..+...+.+. ..++|+|+|||||..++..+..
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l 66 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL 66 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc
Confidence 345555555566543 4678999999999999976544
No 224
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.09 E-value=0.072 Score=40.66 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=19.6
Q ss_pred CCCEEEEEeccccHHHHHHHhhC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTI 41 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~ 41 (143)
++.+|||+|+|+|..++.+|...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~ 108 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL 108 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh
Confidence 46789999999999999888754
No 225
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=0.13 Score=38.27 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=51.3
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEc
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVD 59 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d 59 (143)
+.+..+||=+|..+|.+...++...+ +|. ...-+..|+||.|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence 34678999999999999999999888 453 1234679999999
Q ss_pred CCccchHH-HHHHHHhcccCCeEEEE
Q 032292 60 ADKDNYCN-YHERLMKLLKVGGIAVY 84 (143)
Q Consensus 60 ~~~~~~~~-~~~~~~~~L~~gG~li~ 84 (143)
-...+-.+ ....+...|++||.+++
T Consensus 153 VAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 153 VAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred cCCchHHHHHHHHHHHhcccCCeEEE
Confidence 87665444 45567789999996554
No 226
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.81 E-value=0.031 Score=42.70 Aligned_cols=38 Identities=16% Similarity=-0.047 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI 41 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~ 41 (143)
++...+-+...+...+...|||||.|+|..|..|++..
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~ 52 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG 52 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc
Confidence 45566666666666788999999999999999999886
No 227
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.76 E-value=0.12 Score=38.28 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.4
Q ss_pred cCCCEEEEEeccccHHHHHHHhhC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTI 41 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~ 41 (143)
.+.++|||+|+|+|..++.-+++.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG 101 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG 101 (218)
T ss_pred cccceeeecccccChHHHHHHHhh
Confidence 467999999999999999877663
No 228
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=94.73 E-value=0.067 Score=39.54 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=42.4
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cC-CCCceeEEEEcC
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SE-NEGSFDYAFVDA 60 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~-~~~~fD~v~~d~ 60 (143)
..+...|+|.-||.|+.++.+|+..+. .+ .. ..+.||-|+++-
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 346789999999999999999985332 11 11 267899998876
Q ss_pred CccchHHHHHHHHhcccCCeEEE
Q 032292 61 DKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 61 ~~~~~~~~~~~~~~~L~~gG~li 83 (143)
.... ..+++.+.+++++||++-
T Consensus 178 p~~~-~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PESS-LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSSG-GGGHHHHHHHEEEEEEEE
T ss_pred hHHH-HHHHHHHHHHhcCCcEEE
Confidence 5432 357778889999999873
No 229
>PHA01634 hypothetical protein
Probab=94.42 E-value=0.075 Score=36.80 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=33.5
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCC-------Cc------------------------cCCCCceeEEEEcCCc
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPED-------GQ------------------------SENEGSFDYAFVDADK 62 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~-------~~------------------------~~~~~~fD~v~~d~~~ 62 (143)
+.++|+|||.+.|-|+++++..-... -+ +..-++||...+|+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~iDCeG 102 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVMDCEG 102 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEEEccc
Confidence 67999999999999999998653211 00 3345899999999864
No 230
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.33 E-value=0.35 Score=37.31 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=23.7
Q ss_pred HHHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCC
Q 032292 9 QLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 9 ~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
++|..+... .+|++|||+|||+|..+......++
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~ 56 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP 56 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc
Confidence 444445432 4789999999999987666655555
No 231
>PLN02672 methionine S-methyltransferase
Probab=94.08 E-value=0.088 Score=47.84 Aligned_cols=38 Identities=18% Similarity=0.066 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhhc----CCCEEEEEeccccHHHHHHHhhCC
Q 032292 5 TIHGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 5 ~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
|++-.++..|.... ++++|||+|||+|..++.+++..+
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~ 141 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL 141 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC
Confidence 34445555533221 246899999999999999998865
No 232
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.08 E-value=0.16 Score=39.44 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=37.5
Q ss_pred CCCEEEEEeccc-cHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEEc
Q 032292 19 NAKKTIEIGVFT-GYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFVD 59 (143)
Q Consensus 19 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~d 59 (143)
.|++|+=||||. -.++++|++....+.. ...-..||.||+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 467999999995 4677778765332211 1123589999998
Q ss_pred CCcc----chHHHHHHHHhcccCCeEEEEe
Q 032292 60 ADKD----NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 60 ~~~~----~~~~~~~~~~~~L~~gG~li~d 85 (143)
+-.. .-.+.++.+.+.++||..+++-
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7554 6678999999999999999875
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.07 E-value=0.042 Score=37.52 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=18.6
Q ss_pred EEEEEeccccHHHHHHHhhCC
Q 032292 22 KTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 22 ~vLeiG~g~G~~t~~la~~~~ 42 (143)
.++|||||.|+.+.++++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~ 21 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA 21 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC
Confidence 479999999999999998765
No 234
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.04 E-value=0.31 Score=37.41 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=50.3
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~ 60 (143)
.+..+||=+|.++|++-...+..+.+++. +.+-+-.|.||.|-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv 234 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV 234 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence 46789999999999998888888776543 12235789999998
Q ss_pred CccchHHHH-HHHHhcccCCeEEEEe
Q 032292 61 DKDNYCNYH-ERLMKLLKVGGIAVYD 85 (143)
Q Consensus 61 ~~~~~~~~~-~~~~~~L~~gG~li~d 85 (143)
...+....+ -.+.-.|++||-+++.
T Consensus 235 aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 235 AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 766544432 3455799999988764
No 235
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=93.81 E-value=0.14 Score=41.02 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=20.0
Q ss_pred CCEEEEEeccccHHHHHHHhhCC
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
+.+|||++||+|..++.+++...
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~ 220 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFR 220 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCC
Confidence 45799999999999999998753
No 236
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.75 E-value=0.1 Score=40.57 Aligned_cols=38 Identities=13% Similarity=-0.025 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
|....-+..-+...++..|||||-|||..|..|.++..
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k 81 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK 81 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC
Confidence 34444455555667889999999999999999988743
No 237
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.64 E-value=0.38 Score=37.80 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=72.4
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------------cCCCCce
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------------SENEGSF 53 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------------~~~~~~f 53 (143)
+..+|++||-||-|-|-.....+++ +.-+. ....++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 4568999999999988766655544 11000 2337899
Q ss_pred eEEEEcCCccc------h-HHHHHHHHhcccCCeEEEEe-ccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCe
Q 032292 54 DYAFVDADKDN------Y-CNYHERLMKLLKVGGIAVYD-NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV 125 (143)
Q Consensus 54 D~v~~d~~~~~------~-~~~~~~~~~~L~~gG~li~d-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~ 125 (143)
|+|..|.+... | ..+++.+.+.||++|+++.. +..|-.. .....+++|-..+...-.+
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~--------------~~i~e~r~~~~~~f~~t~y 262 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHL--------------DYIKEGRSFCYVIFDLTAY 262 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHH--------------HHHHHHHHhHHHhcCccce
Confidence 99999976432 2 34788889999999999764 3333210 0445678888777766667
Q ss_pred eEEEeecC----CeeEEEE
Q 032292 126 QLSHVALG----DGITICR 140 (143)
Q Consensus 126 ~~~~lp~~----~Gl~~~~ 140 (143)
-.+..|+- -|+.+|-
T Consensus 263 a~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 263 AITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred eeecCCCCccceEEEEEec
Confidence 77777742 4555554
No 238
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=93.54 E-value=0.44 Score=38.05 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=46.8
Q ss_pred CCEEEEEeccccHHHHHHHhhCCC-CCc-----------cCC--------------CCceeEEEEc---CCc--cchHHH
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------SEN--------------EGSFDYAFVD---ADK--DNYCNY 68 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------~~~--------------~~~fD~v~~d---~~~--~~~~~~ 68 (143)
-...+|+|.|.|..+-.+...+|. ++. +.. -.+-|+||+- ++. .+-.++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvki 257 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKI 257 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHH
Confidence 478899999999999998887663 111 111 1234577653 111 234578
Q ss_pred HHHHHhcccCCeEEEE-eccCC
Q 032292 69 HERLMKLLKVGGIAVY-DNTLW 89 (143)
Q Consensus 69 ~~~~~~~L~~gG~li~-d~~~~ 89 (143)
+++++.-|+|||.|++ +++.-
T Consensus 258 LknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 258 LKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred HHHHHHhCCCCCEEEEEeccCC
Confidence 9999999999987755 55454
No 239
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=93.41 E-value=0.13 Score=40.81 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=19.0
Q ss_pred CCCEEEEEeccccHHHHHHHhhCC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
...++||||||+|.....++...+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~ 137 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY 137 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC
Confidence 357999999999988777776543
No 240
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.23 E-value=0.21 Score=40.89 Aligned_cols=69 Identities=28% Similarity=0.427 Sum_probs=49.8
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c--CCCCceeEEEEc
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S--ENEGSFDYAFVD 59 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~--~~~~~fD~v~~d 59 (143)
++..+|||.-+..|-=|.++|..+...|. + ...++||-|++|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLD 319 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLD 319 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeeec
Confidence 45689999999999999999988876443 0 112379999999
Q ss_pred CC--------cc-------------ch----HHHHHHHHhcccCCeEEEEec
Q 032292 60 AD--------KD-------------NY----CNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 60 ~~--------~~-------------~~----~~~~~~~~~~L~~gG~li~d~ 86 (143)
+. +. .| .+.+..+..++++||+||...
T Consensus 320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 62 10 11 124566779999999999863
No 241
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=93.05 E-value=0.17 Score=39.65 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ 46 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~ 46 (143)
+++..|. ..+...+||.+||.|.-|..+++.+++.++
T Consensus 10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~ 46 (296)
T PRK00050 10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR 46 (296)
T ss_pred HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE
Confidence 4444443 235579999999999999999999875454
No 242
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=92.73 E-value=0.043 Score=41.13 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=47.6
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC------CCc------------------cCCCCceeEEEEcC---CccchHHHHHH
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE------DGQ------------------SENEGSFDYAFVDA---DKDNYCNYHER 71 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~------~~~------------------~~~~~~fD~v~~d~---~~~~~~~~~~~ 71 (143)
.|.++||+|.|-|-.|..|+..+.+ +.+ ...+-+||+|.+-. ...+....++.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~D 191 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLED 191 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHH
Confidence 4689999999999999988766542 000 12345688886421 11244567888
Q ss_pred HHhcccC-CeEEEEeccC
Q 032292 72 LMKLLKV-GGIAVYDNTL 88 (143)
Q Consensus 72 ~~~~L~~-gG~li~d~~~ 88 (143)
+...|+| +|.+|+.-++
T Consensus 192 i~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 192 IHLVLAPSNGRVIVALVL 209 (288)
T ss_pred HHHHhccCCCcEEEEEEe
Confidence 8999999 8887776443
No 243
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=92.65 E-value=0.19 Score=31.40 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=17.2
Q ss_pred hcCCCEEEEEeccccH-HHHHHHhhCC
Q 032292 17 LVNAKKTIEIGVFTGY-SLLLTALTIP 42 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~-~t~~la~~~~ 42 (143)
...|++||-||+.+|| .+..++.++.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg 62 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFG 62 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHC
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhc
Confidence 3568999999999998 4444666554
No 244
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.65 E-value=0.33 Score=41.83 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=26.3
Q ss_pred CceeEEEEcCCcc--c--h--HHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKD--N--Y--CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~--~--~--~~~~~~~~~~L~~gG~li~ 84 (143)
..||.+|.|+-.. + . .++|..+.+++++||+++-
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 5699999997321 1 1 4578999999999999984
No 245
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=92.54 E-value=0.25 Score=39.66 Aligned_cols=22 Identities=18% Similarity=0.033 Sum_probs=19.6
Q ss_pred CEEEEEeccccHHHHHHHhhCC
Q 032292 21 KKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~ 42 (143)
.++||++||+|..++.+++...
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~ 229 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR 229 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC
Confidence 5899999999999999998754
No 246
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.07 E-value=0.14 Score=38.87 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=47.9
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC----CCc-------------------------------------cCCCCceeEEE
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE----DGQ-------------------------------------SENEGSFDYAF 57 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~----~~~-------------------------------------~~~~~~fD~v~ 57 (143)
..++++|+-...|.|+-.+++.+-. ++. .+..++-|+|+
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVv 120 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVV 120 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEE
Confidence 4689999999999999999988643 111 23457899999
Q ss_pred EcCCc-----cc---hH------HHHHHHHhcccCCeEEEE
Q 032292 58 VDADK-----DN---YC------NYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 58 ~d~~~-----~~---~~------~~~~~~~~~L~~gG~li~ 84 (143)
+|+.. ++ |. .++......|+|||.+|.
T Consensus 121 cDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 121 CDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred eCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 99853 22 32 234444589999999986
No 247
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=91.86 E-value=0.88 Score=36.03 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=19.6
Q ss_pred CCCEEEEEeccccHHHHHHHhhCC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
+...++|+|||.|.=+..|.+++.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH
Confidence 455899999999998888777764
No 248
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.82 E-value=0.2 Score=38.47 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=30.1
Q ss_pred ceeEEEEcC-------CccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 52 SFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 52 ~fD~v~~d~-------~~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
+||.|++.. +...|..+++.+.++|||||.||+-.++
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 599998643 4467889999999999999999886554
No 249
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.54 E-value=0.16 Score=34.05 Aligned_cols=39 Identities=21% Similarity=0.500 Sum_probs=26.1
Q ss_pred ceeEEEEcCCc---------cchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 52 SFDYAFVDADK---------DNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 52 ~fD~v~~d~~~---------~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
+||+|++-.-. ......|+.+...|+|||++|+.-=-|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~ 48 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWK 48 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcH
Confidence 48999875421 1234589999999999999998744443
No 250
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.48 E-value=0.92 Score=36.92 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=48.7
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------------cCCCCce
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------------SENEGSF 53 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------------~~~~~~f 53 (143)
....+||-+|-|-|.....+.+ .|...+ ....+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4678999999999999988865 342111 2345789
Q ss_pred eEEEEcCCccc-------h-HHHHHHHHhcccCCeEEEEe
Q 032292 54 DYAFVDADKDN-------Y-CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 54 D~v~~d~~~~~-------~-~~~~~~~~~~L~~gG~li~d 85 (143)
|+|++|-...+ | .+++..+.++|+++|+++++
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 99999863221 2 24566777999999999886
No 251
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.36 E-value=0.58 Score=35.96 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=29.0
Q ss_pred HHHHHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCCC
Q 032292 7 HGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 7 ~~~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
+..++..+... .+...++|.|||.|..+.|++..++.
T Consensus 3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~ 42 (259)
T PF05206_consen 3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQE 42 (259)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhh
Confidence 45566666654 35678999999999999999999853
No 252
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=91.08 E-value=0.25 Score=38.45 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhcCCCEEEEEeccccHHHHH----------HHhhCCC-----CC--c--------cCCCCceeEEEEcC
Q 032292 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLL----------TALTIPE-----DG--Q--------SENEGSFDYAFVDA 60 (143)
Q Consensus 6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~----------la~~~~~-----~~--~--------~~~~~~fD~v~~d~ 60 (143)
.+.+|+..+. ....++|+|||.|-.+.. +...+-. ++ . +..+.+||.+..-+
T Consensus 35 ~v~qfl~~~~---~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsia 111 (293)
T KOG1331|consen 35 MVRQFLDSQP---TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIA 111 (293)
T ss_pred HHHHHHhccC---CcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhh
Confidence 4445555443 367889999999843321 0000000 11 0 45578899987655
Q ss_pred Cccc------hHHHHHHHHhcccCCeEEEE
Q 032292 61 DKDN------YCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 ~~~~------~~~~~~~~~~~L~~gG~li~ 84 (143)
..++ -..+++++.+.|+|||-..+
T Consensus 112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 112 VIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 3222 24578999999999997654
No 253
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.81 E-value=1.5 Score=34.88 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=46.7
Q ss_pred CCCEEEEEeccc-cHHHHHHHhhCCCCCc-----------------------cC-C------------CCceeEEEEcCC
Q 032292 19 NAKKTIEIGVFT-GYSLLLTALTIPEDGQ-----------------------SE-N------------EGSFDYAFVDAD 61 (143)
Q Consensus 19 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~-----------------------~~-~------------~~~fD~v~~d~~ 61 (143)
+..+|+-+|||+ |..++.+|+..+.... .. . ...+|++|-...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 445899999996 8888888888764211 00 0 125899886544
Q ss_pred ccchHHHHHHHHhcccCCeEEEEecc
Q 032292 62 KDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 62 ~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
....++.+.+.+++||.+++-.+
T Consensus 248 ---~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 248 ---SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred ---CHHHHHHHHHHhcCCCEEEEEec
Confidence 35578899999999999987543
No 254
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.28 E-value=0.47 Score=33.15 Aligned_cols=67 Identities=25% Similarity=0.341 Sum_probs=41.3
Q ss_pred CceeEEEEcC------Ccc------chHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHH
Q 032292 51 GSFDYAFVDA------DKD------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS 118 (143)
Q Consensus 51 ~~fD~v~~d~------~~~------~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~ 118 (143)
+++|+++.+- ++. .-..+++.++++|++||++++ +.|.|.-...+ ...++.+|...
T Consensus 45 ~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~i--v~Y~GH~gG~e----------E~~av~~~~~~ 112 (140)
T PF06962_consen 45 GPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITI--VVYPGHPGGKE----------ESEAVEEFLAS 112 (140)
T ss_dssp --EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEE--EE--STCHHHH----------HHHHHHHHHHT
T ss_pred CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEE--EEeCCCCCCHH----------HHHHHHHHHHh
Confidence 4899998752 331 224578899999999999988 67776422110 45678888888
Q ss_pred hhcCCCeeEEEe
Q 032292 119 LADDPRVQLSHV 130 (143)
Q Consensus 119 l~~~~~~~~~~l 130 (143)
|. ...|.+...
T Consensus 113 L~-~~~~~V~~~ 123 (140)
T PF06962_consen 113 LD-QKEFNVLKY 123 (140)
T ss_dssp S--TTTEEEEEE
T ss_pred CC-cceEEEEEE
Confidence 74 335666544
No 255
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.99 E-value=0.32 Score=40.62 Aligned_cols=75 Identities=21% Similarity=0.192 Sum_probs=56.7
Q ss_pred HHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCC
Q 032292 12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENE 50 (143)
Q Consensus 12 ~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~ 50 (143)
..+.+..++-+|||.=+++|.-++..|+.++.-.. +...
T Consensus 102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccc
Confidence 34455567889999999999999999998874111 2335
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
..||+|-+|--. ....+++.+.+.++.||++.+--+
T Consensus 182 ~~FDvIDLDPyG-s~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 182 KFFDVIDLDPYG-SPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred cccceEecCCCC-CccHHHHHHHHHhhcCCEEEEEec
Confidence 789999998642 345678889999999999987533
No 256
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=88.72 E-value=0.3 Score=36.52 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.8
Q ss_pred CEEEEEeccccHHHHHHHhhCCCC
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPED 44 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~~ 44 (143)
-.+.|||||.|-..+.++..+|+.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdt 85 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDT 85 (249)
T ss_pred ceEEeeccCccchhhhccccCccc
Confidence 457999999999999999888863
No 257
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=86.97 E-value=0.96 Score=29.21 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=25.3
Q ss_pred CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+...||++++|+...--++++-.+...++-||++++
T Consensus 7 ~LG~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllil 43 (92)
T PF08351_consen 7 LLGQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLIL 43 (92)
T ss_dssp TTT--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEE
T ss_pred hhCCccCEEEEEccCCCCHHHHHHHhcceecCeEEEE
Confidence 3456899999999877678889999999999999986
No 258
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=86.80 E-value=4.6 Score=28.67 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=40.9
Q ss_pred HHHHHHHhhc--CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------c---CCCCcee
Q 032292 9 QLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------S---ENEGSFD 54 (143)
Q Consensus 9 ~~l~~l~~~~--~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------~---~~~~~fD 54 (143)
..|...+... -+.-|||+|-|.|-.=-.|-+.+|+.-. + ....+.-
T Consensus 16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~ 95 (160)
T PF12692_consen 16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAA 95 (160)
T ss_dssp HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EE
T ss_pred HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceE
Confidence 3444444433 3578999999999988889888875211 0 1233445
Q ss_pred EEEEcCCccchH------HH-HHHHHhcccCCeEEEEeccCC
Q 032292 55 YAFVDADKDNYC------NY-HERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 55 ~v~~d~~~~~~~------~~-~~~~~~~L~~gG~li~d~~~~ 89 (143)
++..|-...+.. .+ -..+.++|++||+++.+.-+.
T Consensus 96 laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 96 LAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp EEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 666664322211 12 234569999999999876654
No 259
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=86.51 E-value=4.1 Score=33.68 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=49.3
Q ss_pred cChHHHHHHHHHHh----hcCCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------------
Q 032292 3 LLTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------- 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------- 46 (143)
..+...+-|...+. ..+..+++|+=||.|..++++|+.... .|.
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~ 352 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE 352 (432)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence 44455544444442 235679999999999999999966542 000
Q ss_pred --cC--CCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEE
Q 032292 47 --SE--NEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 47 --~~--~~~~fD~v~~d~~~~~~~-~~~~~~~~~L~~gG~li~ 84 (143)
.. ....+|.|++|-.-.--. ..++. +..++|..++.+
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~-l~~~~p~~IvYV 394 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGADREVLKQ-LAKLKPKRIVYV 394 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCCCHHHHHH-HHhcCCCcEEEE
Confidence 11 134789999996432222 34444 455567677755
No 260
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=86.15 E-value=4.9 Score=32.63 Aligned_cols=76 Identities=11% Similarity=-0.056 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------cCCCCceeEEEEcC
Q 032292 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------~~~~~~fD~v~~d~ 60 (143)
+|..++......+||-++=..|..|.+++..-+..-. +...+.+|+|++--
T Consensus 35 ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~~ 114 (378)
T PRK15001 35 LLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKV 114 (378)
T ss_pred HHHHHhhcccCCCEEEEcCchhHHHHHHHhCCCCeeehHHHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEEe
Confidence 4555555333348999999999999999954332110 22345799999877
Q ss_pred Ccc--chHHHHHHHHhcccCCeEEEEe
Q 032292 61 DKD--NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 61 ~~~--~~~~~~~~~~~~L~~gG~li~d 85 (143)
.|. .....+..+.++|.+|+.+++-
T Consensus 115 PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 115 PKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 654 2233566777999999998754
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.14 E-value=1.9 Score=34.47 Aligned_cols=68 Identities=18% Similarity=0.051 Sum_probs=45.9
Q ss_pred hhcCCCEEEEEecc-ccHHHHHHHhhCCCCCc-----------------------c------CCCCceeEEEEcCCccch
Q 032292 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-----------------------S------ENEGSFDYAFVDADKDNY 65 (143)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~~~~~-----------------------~------~~~~~fD~v~~d~~~~~~ 65 (143)
...+.++|+-+|+| .|..++.+|+++...-. . ...+.||+|+....
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---- 238 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---- 238 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence 34567889888877 34678888987753100 0 11223899887654
Q ss_pred HHHHHHHHhcccCCeEEEEecc
Q 032292 66 CNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~d~~ 87 (143)
...++...+.|++||.+++-..
T Consensus 239 ~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 239 PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred hhhHHHHHHHHhcCCEEEEECC
Confidence 4567788899999999987443
No 262
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=86.09 E-value=0.72 Score=34.58 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=38.1
Q ss_pred CEEEEEeccccHHHHHHHhhCCC---------CCc--------c---CCCCceeEEEEcCC------ccchHHHHHHHHh
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPE---------DGQ--------S---ENEGSFDYAFVDAD------KDNYCNYHERLMK 74 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~---------~~~--------~---~~~~~fD~v~~d~~------~~~~~~~~~~~~~ 74 (143)
-++|||||-+.+..+.-...+.- .+. | ...+.||+|.+.-- ....-+.+..+.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~ 132 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHK 132 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHH
Confidence 59999999866544432222210 111 2 24678999976531 1223457788889
Q ss_pred cccCCeE
Q 032292 75 LLKVGGI 81 (143)
Q Consensus 75 ~L~~gG~ 81 (143)
+|+++|.
T Consensus 133 fL~~~g~ 139 (219)
T PF11968_consen 133 FLKPPGL 139 (219)
T ss_pred HhCCCCc
Confidence 9999999
No 263
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=85.27 E-value=4.1 Score=32.66 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=51.2
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEEcCC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~d~~ 61 (143)
..+.+|||.=+|.|+.|+.+|+.-.+. . ....+.+|-|++..-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 358999999999999999999876542 1 011156888887764
Q ss_pred ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 62 KDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 62 ~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
+. -.+++..+.+.+++||++-++...
T Consensus 266 ~~-a~~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 266 KS-AHEFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred Cc-chhhHHHHHHHhhcCcEEEEEecc
Confidence 42 245777888999999999887654
No 264
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=84.48 E-value=4.9 Score=35.09 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------------------
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------------------- 46 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------------------- 46 (143)
++.-.|-.|=|+|-.|..+.+..|. ++
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~-sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~ 400 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPT-SRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPE 400 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcc-cceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCcc
Confidence 4577899999999999999888764 22
Q ss_pred ---------cCCCCceeEEEEcCCccchHH-------HHHHHHhcccCCeEEEEecc
Q 032292 47 ---------SENEGSFDYAFVDADKDNYCN-------YHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 47 ---------~~~~~~fD~v~~d~~~~~~~~-------~~~~~~~~L~~gG~li~d~~ 87 (143)
....-++|+|++|+...+... .-+.+..+|.++|.|||-..
T Consensus 401 TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTY 457 (675)
T PF14314_consen 401 TWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTY 457 (675)
T ss_pred HHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehh
Confidence 233568999999997654221 22234478899999998743
No 265
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.38 E-value=8.6 Score=30.67 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=23.6
Q ss_pred HHhhcCCCEEEEEeccc-cHHHHHHHhhCCC
Q 032292 14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPE 43 (143)
Q Consensus 14 l~~~~~~~~vLeiG~g~-G~~t~~la~~~~~ 43 (143)
++...+..+||.+|+|. |..++.+|++.+.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~ 209 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGA 209 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 33445678999999988 8899999988763
No 266
>PRK11524 putative methyltransferase; Provisional
Probab=83.69 E-value=2.1 Score=33.08 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=25.7
Q ss_pred CCceeEEEEcCCc---------------cchH----HHHHHHHhcccCCeEEEEe
Q 032292 50 EGSFDYAFVDADK---------------DNYC----NYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 50 ~~~fD~v~~d~~~---------------~~~~----~~~~~~~~~L~~gG~li~d 85 (143)
+++||+|++|-.- .+|. ..+..+.++|++||.+++.
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5789999997421 1122 4677888999999998763
No 267
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=83.42 E-value=3.3 Score=33.50 Aligned_cols=27 Identities=7% Similarity=0.026 Sum_probs=22.6
Q ss_pred hhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292 16 RLVNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
...+..+|||+-...|.-|+.+.+++-
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~ 178 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALH 178 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHh
Confidence 456778999999999999988877754
No 268
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.21 E-value=5.2 Score=31.99 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=53.2
Q ss_pred cChHHHHHHHHHH---------hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc--------------------------
Q 032292 3 LLTIHGQLMAMLL---------RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-------------------------- 46 (143)
Q Consensus 3 ~~~~~~~~l~~l~---------~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~-------------------------- 46 (143)
++-++|.++.-|. ......+||-+|+|. |..|...|++++..-.
T Consensus 144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~ 223 (354)
T KOG0024|consen 144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSH 223 (354)
T ss_pred CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccc
Confidence 5566666665544 335678999999995 8899989999874211
Q ss_pred ------------c-CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 47 ------------S-ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 ------------~-~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
. .....+|+.|-... ....++.+...+++||.++.-
T Consensus 224 ~~~~~~~~~~v~~~~g~~~~d~~~dCsG---~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 224 KSSPQELAELVEKALGKKQPDVTFDCSG---AEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred cccHHHHHHHHHhhccccCCCeEEEccC---chHHHHHHHHHhccCCEEEEe
Confidence 0 11234777774332 234566778899999997653
No 269
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=82.95 E-value=5.8 Score=30.39 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=42.1
Q ss_pred hcCCCEEEEEecc-ccHHHHHHHhhCCCCCc-----------------------c----------CCCCceeEEEEcCCc
Q 032292 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-----------------------S----------ENEGSFDYAFVDADK 62 (143)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~t~~la~~~~~~~~-----------------------~----------~~~~~fD~v~~d~~~ 62 (143)
..+..+||..|+| .|..++.+|+..+.... . .....+|+|+-....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~ 242 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT 242 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCC
Confidence 4456788888876 47888888887643100 0 113458876633221
Q ss_pred cchHHHHHHHHhcccCCeEEEE
Q 032292 63 DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~ 84 (143)
...++.+.+.|+++|.++.
T Consensus 243 ---~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 243 ---QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred ---HHHHHHHHHHhhcCCEEEE
Confidence 3467788899999999875
No 270
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=82.63 E-value=1.9 Score=37.31 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=47.4
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCcc-
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADKD- 63 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~~- 63 (143)
.+++.|||++|..|.|.-..++.+|.++. -...-+-|+|+.|+.+.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnV 122 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNV 122 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCcc
Confidence 46789999999999999998888886432 01123459999998642
Q ss_pred --ch-----------HHHHHHHHhcccCCeEEE
Q 032292 64 --NY-----------CNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 64 --~~-----------~~~~~~~~~~L~~gG~li 83 (143)
.+ ...++.+...|+.||.++
T Consensus 123 g~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 123 GGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 22 134566678999999954
No 271
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=82.30 E-value=7.4 Score=30.50 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=39.4
Q ss_pred cCCCEEEEEeccc-cHHHHHHHhh-CCCCCc-------------c---------CC-C-CceeEEEEcCCcc-chHHHHH
Q 032292 18 VNAKKTIEIGVFT-GYSLLLTALT-IPEDGQ-------------S---------EN-E-GSFDYAFVDADKD-NYCNYHE 70 (143)
Q Consensus 18 ~~~~~vLeiG~g~-G~~t~~la~~-~~~~~~-------------~---------~~-~-~~fD~v~~d~~~~-~~~~~~~ 70 (143)
.+.++||-+|+|. |..++.++++ .+.... . .. + ..+|+|| |+... .....++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~vi-D~~G~~~~~~~~~ 240 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAF-ECVGGRGSQSAIN 240 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEE-ECCCCCccHHHHH
Confidence 4568999999753 3345555664 321100 0 00 1 1378777 43322 1345788
Q ss_pred HHHhcccCCeEEEEe
Q 032292 71 RLMKLLKVGGIAVYD 85 (143)
Q Consensus 71 ~~~~~L~~gG~li~d 85 (143)
...++|++||.+++-
T Consensus 241 ~~~~~l~~~G~iv~~ 255 (341)
T cd08237 241 QIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHhCcCCcEEEEE
Confidence 889999999998753
No 272
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=82.12 E-value=1.4 Score=29.58 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=17.8
Q ss_pred CCCEEEEEeccccHHHHHHHhh
Q 032292 19 NAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~ 40 (143)
++..-+|||||.|...--|.+.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E 79 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE 79 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC
Confidence 4568999999999988776654
No 273
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=81.95 E-value=2.2 Score=34.91 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
+++++.+....+.+.++|+|.|.|+.+..|+-..+
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~ 176 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG 176 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC
Confidence 46667777777889999999999999999987654
No 274
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.35 E-value=1.5 Score=31.28 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=21.1
Q ss_pred HHHHHHHhh---cCCCEEEEEeccccHHHHHHH
Q 032292 9 QLMAMLLRL---VNAKKTIEIGVFTGYSLLLTA 38 (143)
Q Consensus 9 ~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la 38 (143)
.+++.+-.. ...+.++|+|||+|..++..+
T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s 67 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS 67 (185)
T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhh
Confidence 455555443 357899999999999985443
No 275
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.31 E-value=5 Score=26.46 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------c-CCCCceeEEEEcCCccchHHHHHHHH
Q 032292 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------S-ENEGSFDYAFVDADKDNYCNYHERLM 73 (143)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------~-~~~~~fD~v~~d~~~~~~~~~~~~~~ 73 (143)
|.+...+++... .+|+-+.. .-.-..+++.++.+.. . .....+|.||-.... ...++...
T Consensus 3 G~~a~q~ak~~G-~~vi~~~~--~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---~~~~~~~~ 76 (130)
T PF00107_consen 3 GLMAIQLAKAMG-AKVIATDR--SEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---GDTLQEAI 76 (130)
T ss_dssp HHHHHHHHHHTT-SEEEEEES--SHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---HHHHHHHH
T ss_pred HHHHHHHHHHcC-CEEEEEEC--CHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc---HHHHHHHH
Confidence 555666666655 66554443 3445566676652111 1 223579999865442 45788899
Q ss_pred hcccCCeEEEEecc
Q 032292 74 KLLKVGGIAVYDNT 87 (143)
Q Consensus 74 ~~L~~gG~li~d~~ 87 (143)
.+|+++|.+++-..
T Consensus 77 ~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 77 KLLRPGGRIVVVGV 90 (130)
T ss_dssp HHEEEEEEEEEESS
T ss_pred HHhccCCEEEEEEc
Confidence 99999999987443
No 276
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.27 E-value=10 Score=27.14 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC--CCCCc-------------------------------cCCCCc
Q 032292 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI--PEDGQ-------------------------------SENEGS 52 (143)
Q Consensus 6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~--~~~~~-------------------------------~~~~~~ 52 (143)
++-+=...++..++..+.+|+|+|-|..-+..++.. +..|. ...-.+
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 333333344444566899999999998777766553 22222 122356
Q ss_pred eeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 53 fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
|..|.+-+...-....-+++..-+..|..++.
T Consensus 139 y~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 139 YRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred cceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 66777666544344444455556677777764
No 277
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=81.18 E-value=7.9 Score=29.85 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=41.2
Q ss_pred CCCEEEEEecc-ccHHHHHHHhhCCCCCc-------------------c-C--CCCceeEEEEcCCccchHHHHHHHHhc
Q 032292 19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQ-------------------S-E--NEGSFDYAFVDADKDNYCNYHERLMKL 75 (143)
Q Consensus 19 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~-------------------~-~--~~~~fD~v~~d~~~~~~~~~~~~~~~~ 75 (143)
+.+++|-+|+| .|..++.+|++.+..-. . . ....+|+|| |+... ...++.+.+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvi-d~~G~--~~~~~~~~~~ 220 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIY-DASGD--PSLIDTLVRR 220 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEE-ECCCC--HHHHHHHHHh
Confidence 45789999975 36677778887653210 0 0 123578777 44322 3456788899
Q ss_pred ccCCeEEEEe
Q 032292 76 LKVGGIAVYD 85 (143)
Q Consensus 76 L~~gG~li~d 85 (143)
|+++|.+++-
T Consensus 221 l~~~G~iv~~ 230 (308)
T TIGR01202 221 LAKGGEIVLA 230 (308)
T ss_pred hhcCcEEEEE
Confidence 9999999853
No 278
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.03 E-value=4.5 Score=34.16 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=46.8
Q ss_pred cCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------cC-C--------------C---------
Q 032292 18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------SE-N--------------E--------- 50 (143)
Q Consensus 18 ~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------~~-~--------------~--------- 50 (143)
.++.+|+-+|+|. |..++..|+.++..-. .. . +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 4689999999986 7788888888764100 00 0 0
Q ss_pred ----CceeEEEEcCCccc--hHHH-HHHHHhcccCCeEEEEecc
Q 032292 51 ----GSFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 51 ----~~fD~v~~d~~~~~--~~~~-~~~~~~~L~~gG~li~d~~ 87 (143)
..+|+|+-.+.... .+.. .++..+.+||||+++.=.+
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 34899887654322 2334 4889999999999875333
No 279
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=80.58 E-value=9.5 Score=27.89 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=42.1
Q ss_pred cCCCEEEEEeccc-cHHHHHHHhhCCCCCc---------------------c------------CCCCceeEEEEcCCcc
Q 032292 18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQ---------------------S------------ENEGSFDYAFVDADKD 63 (143)
Q Consensus 18 ~~~~~vLeiG~g~-G~~t~~la~~~~~~~~---------------------~------------~~~~~fD~v~~d~~~~ 63 (143)
.+.++||..|+|. |..++.+++.....-. . ...+.+|+++.....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~- 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG- 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC-
Confidence 5678999999985 7777777776542100 0 013568888854432
Q ss_pred chHHHHHHHHhcccCCeEEEE
Q 032292 64 NYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 64 ~~~~~~~~~~~~L~~gG~li~ 84 (143)
...++.+.+.|+++|.++.
T Consensus 212 --~~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 212 --PETLAQALRLLRPGGRIVV 230 (271)
T ss_pred --HHHHHHHHHhcccCCEEEE
Confidence 1346677889999999875
No 280
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=80.41 E-value=6.5 Score=30.63 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=25.5
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
++||+|++..-..+....++.+.+++++++.++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 5799999876444456677888888999987753
No 281
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=80.28 E-value=1.3 Score=36.07 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=15.7
Q ss_pred CCEEEEEeccccHHHHHHH
Q 032292 20 AKKTIEIGVFTGYSLLLTA 38 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la 38 (143)
+-+|+|+|||+|..|+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 5589999999998887653
No 282
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.12 E-value=9.5 Score=29.79 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=39.8
Q ss_pred CCCEEEEEecc-ccHHHHHHHhhCCCCCc----------------------c----------CCCCceeEEEEcCCccch
Q 032292 19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQ----------------------S----------ENEGSFDYAFVDADKDNY 65 (143)
Q Consensus 19 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~----------------------~----------~~~~~fD~v~~d~~~~~~ 65 (143)
+.++||-+|+| .|..++.+|+..+..-. . ...+.+|+||-....
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~--- 245 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH--- 245 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC---
Confidence 56789988875 25566677777653100 0 011347887743321
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 032292 66 CNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~d 85 (143)
...++.+.+.|++||.++.-
T Consensus 246 ~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 246 PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred HHHHHHHHHHhhcCCEEEEE
Confidence 23567788999999998864
No 283
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=79.93 E-value=1.7 Score=28.14 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=33.9
Q ss_pred CCEEEEEeccccHHHHHHHhhCCC----CCc------------cCCCCceeEEEEcCCccchHHHHHHHHhcccCC
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPE----DGQ------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 79 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~----~~~------------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~g 79 (143)
.++|| +=||+|.+|-.++..+.+ .+. ......+|+|++..... ..++++.+...+-
T Consensus 3 ~~~IL-l~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~---~~~~~i~~~~~~~ 74 (95)
T TIGR00853 3 ETNIL-LLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA---YMLPDLKKETDKK 74 (95)
T ss_pred ccEEE-EECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH---HHHHHHHHHhhhc
Confidence 35676 459999988888877643 111 12345789999865433 3445555555443
No 284
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=79.55 E-value=1.7 Score=36.25 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.4
Q ss_pred EEEEEeccccHHHHHHHhhCCC
Q 032292 22 KTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 22 ~vLeiG~g~G~~t~~la~~~~~ 43 (143)
.|||||||||..++..+++..+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD 90 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD 90 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC
Confidence 5799999999999987777643
No 285
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=79.53 E-value=2.6 Score=28.70 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCceeEEEEcCCc--cch----HHHHHHHHhcccCCeEEEE
Q 032292 50 EGSFDYAFVDADK--DNY----CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 50 ~~~fD~v~~d~~~--~~~----~~~~~~~~~~L~~gG~li~ 84 (143)
...||.||.|+-. .+. .++++.+.+++++||++..
T Consensus 48 ~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 48 DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp -T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 3689999999732 121 4689999999999999964
No 286
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.48 E-value=12 Score=29.16 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=41.1
Q ss_pred cCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------c------------CCCCceeEEEEcCCc
Q 032292 18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------S------------ENEGSFDYAFVDADK 62 (143)
Q Consensus 18 ~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------~------------~~~~~fD~v~~d~~~ 62 (143)
.+.++||-.|+|. |..++.+|+..+.... . .....+|-+++|+..
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G 238 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence 4567999888743 4555666766543110 0 011357755666543
Q ss_pred cchHHHHHHHHhcccCCeEEEEec
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
. ...++...+.|++||.+++-.
T Consensus 239 ~--~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 239 V--PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred C--HHHHHHHHHHhhcCCEEEEEc
Confidence 2 346778889999999988643
No 287
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=78.39 E-value=8.9 Score=30.10 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=28.5
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
..++|+|++..-.-+..+.++.+.+.+++...+++
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence 45799999987555667889999999999987764
No 288
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=78.06 E-value=17 Score=28.31 Aligned_cols=68 Identities=15% Similarity=0.038 Sum_probs=41.2
Q ss_pred hhcCCCEEEEEecc-ccHHHHHHHhhCCCCC--------c-------------c---CCCCceeEEEEcCCccchHHHHH
Q 032292 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG--------Q-------------S---ENEGSFDYAFVDADKDNYCNYHE 70 (143)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~~~~--------~-------------~---~~~~~fD~v~~d~~~~~~~~~~~ 70 (143)
...+.++||-.|+| .|..++.+|+..+..- + . ...+.+|.++..... ...++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~---~~~~~ 238 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPA---GGLVP 238 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCc---HHHHH
Confidence 34567899999964 3445566777654210 0 0 112347876543222 24677
Q ss_pred HHHhcccCCeEEEEec
Q 032292 71 RLMKLLKVGGIAVYDN 86 (143)
Q Consensus 71 ~~~~~L~~gG~li~d~ 86 (143)
...+.|++||.+++-.
T Consensus 239 ~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 239 PALEALDRGGVLAVAG 254 (329)
T ss_pred HHHHhhCCCcEEEEEe
Confidence 8889999999997643
No 289
>PRK10742 putative methyltransferase; Provisional
Probab=78.05 E-value=4.1 Score=31.22 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCCC--EEEEEeccccHHHHHHHhh
Q 032292 8 GQLMAMLLRLVNAK--KTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 8 ~~~l~~l~~~~~~~--~vLeiG~g~G~~t~~la~~ 40 (143)
++.|...+.+.+.. +|||.=+|+|.-++.+|..
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~ 109 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV 109 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc
Confidence 35555566555655 8999999999999999876
No 290
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=77.84 E-value=11 Score=28.96 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=36.8
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCccCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
.|.+|+|||||.=-.++.+....+ ..-.+=+|.+. ...+.+..+...|++.+-+.+.|.+-.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~---------~a~Y~a~DID~-~~ve~l~~~l~~l~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAP---------GATYIAYDIDS-QLVEFLNAFLAVLGVPHDARVRDLLSD 166 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSST---------T-EEEEEESBH-HHHHHHHHHHHHTT-CEEEEEE-TTTS
T ss_pred CCchhhhhhccCCceehhhcccCC---------CcEEEEEeCCH-HHHHHHHHHHHhhCCCcceeEeeeecc
Confidence 489999999987666665432211 12233345443 356678888899999998888777643
No 291
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=77.12 E-value=19 Score=28.42 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=43.4
Q ss_pred HhhcCCCEEEEEecc--ccHHHHHHHhhCCCC-----Cc----------------------------cCC-CCceeEEEE
Q 032292 15 LRLVNAKKTIEIGVF--TGYSLLLTALTIPED-----GQ----------------------------SEN-EGSFDYAFV 58 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g--~G~~t~~la~~~~~~-----~~----------------------------~~~-~~~fD~v~~ 58 (143)
..+...++||-.|.. .|..++.||++.... +. ... ...+|+|+-
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 335567899999954 456777789888621 00 111 235898884
Q ss_pred cCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 59 DADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 59 d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.-. ...+......|+++|.++.-
T Consensus 218 ~vG----~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 218 TVG----GDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred CCC----HHHHHHHHHHhccCCEEEEE
Confidence 322 34556778999999988763
No 292
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=77.03 E-value=13 Score=28.33 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=42.5
Q ss_pred HHhhcCCCEEEEEe--ccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEE
Q 032292 14 LLRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFV 58 (143)
Q Consensus 14 l~~~~~~~~vLeiG--~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~ 58 (143)
.+...+.++||-.| .+.|..++.+|+..+..-. ....+.+|+|+
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vl- 216 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYF- 216 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEE-
Confidence 34455678998888 4667777888887653100 01123478776
Q ss_pred cCCccchHHHHHHHHhcccCCeEEEE
Q 032292 59 DADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 59 d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
|+... ..++...+.|+++|.++.
T Consensus 217 d~~g~---~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 217 DNVGG---EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred ECCCH---HHHHHHHHhhccCCEEEE
Confidence 43222 456788899999999874
No 293
>PRK13699 putative methylase; Provisional
Probab=76.69 E-value=4.4 Score=30.35 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCCceeEEEEcCC--------------ccch----HHHHHHHHhcccCCeEEEE
Q 032292 49 NEGSFDYAFVDAD--------------KDNY----CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 49 ~~~~fD~v~~d~~--------------~~~~----~~~~~~~~~~L~~gG~li~ 84 (143)
.++++|+|+.|-. ...| ...+.++.++|||||.+++
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3577888888721 0112 3467788899999998874
No 294
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=76.65 E-value=3.9 Score=33.18 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cCCCCceeEEEEc
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SENEGSFDYAFVD 59 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~~~~~fD~v~~d 59 (143)
++-+|||.=+|+|.=++..++.++.... ......||+|=+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3459999999999999999988653111 1146789999999
Q ss_pred CCccchHHHHHHHHhcccCCeEEEEecc
Q 032292 60 ADKDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 60 ~~~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
.- .....+++.+.+.++.||+|.+..+
T Consensus 129 Pf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 129 PF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 74 3457789999999999999987644
No 295
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=75.95 E-value=8.5 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.6
Q ss_pred EEEEeccccHHHHHHHhhCC
Q 032292 23 TIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 23 vLeiG~g~G~~t~~la~~~~ 42 (143)
|.||||-.||.+++|.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~ 20 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK 20 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS
T ss_pred CceeccchhHHHHHHHhcCC
Confidence 68999999999999988743
No 296
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=75.77 E-value=4.2 Score=30.69 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=19.7
Q ss_pred CCEEEEEeccccHHHHHHHhhCCC
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
+-+|+|+|.|+|..+.-+.+.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~ 42 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRK 42 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHH
Confidence 469999999999999999888764
No 297
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=75.25 E-value=3.8 Score=32.78 Aligned_cols=41 Identities=7% Similarity=-0.068 Sum_probs=25.9
Q ss_pred CcChHHHHHHHHHH-hhc--CCCEEEEEeccccHHHHHHHhhCC
Q 032292 2 LLLTIHGQLMAMLL-RLV--NAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 2 ~~~~~~~~~l~~l~-~~~--~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
|+.+.+.+-|...+ ... .+..+||+=||+|..|+.+|+...
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~ 219 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK 219 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC
Confidence 34455554444433 222 234899999999999999998764
No 298
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=74.34 E-value=5.1 Score=26.41 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=39.1
Q ss_pred CEEEEEeccccHHHHHHHhhCCC----CCc------------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPE----DGQ------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~----~~~------------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
++||=+ ||.|.+|-.|++.+.. .+. ......+|+|++.-. ....++.+.+...+-=++++
T Consensus 4 kkIllv-C~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~Pq---i~~~~~~i~~~~~~~pV~~I 79 (106)
T PRK10499 4 KHIYLF-CSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQ---IAYMLPEIQRLLPNKPVEVI 79 (106)
T ss_pred CEEEEE-CCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEECHH---HHHHHHHHHhhcCCCCEEEE
Confidence 456655 9999999888855432 111 122457899887532 33344455444444467788
Q ss_pred eccCCC
Q 032292 85 DNTLWG 90 (143)
Q Consensus 85 d~~~~~ 90 (143)
++..|.
T Consensus 80 ~~~~Yg 85 (106)
T PRK10499 80 DSLLYG 85 (106)
T ss_pred ChHhhh
Confidence 877664
No 299
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=73.65 E-value=26 Score=26.92 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=42.2
Q ss_pred HhhcCCCEEEEEec--cccHHHHHHHhhCCCCCc-----------------------c-----------CCCCceeEEEE
Q 032292 15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ-----------------------S-----------ENEGSFDYAFV 58 (143)
Q Consensus 15 ~~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~-----------------------~-----------~~~~~fD~v~~ 58 (143)
+...+.++||-.|. +.|..++.+|+..+.... . ...+.+|+||
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~- 212 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYF- 212 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEE-
Confidence 44456789998884 567788888887643100 0 0113478777
Q ss_pred cCCccchHHHHHHHHhcccCCeEEEE
Q 032292 59 DADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 59 d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
|+... ..++..+++|+++|.++.
T Consensus 213 d~~G~---~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 213 DNVGG---EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred ECCCH---HHHHHHHHHhCcCcEEEE
Confidence 43322 245778899999999985
No 300
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=73.47 E-value=6 Score=26.96 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=27.7
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.++||+||+..-..+....++.+.+++.++..+++
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 57899999987555667889999999999976654
No 301
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=73.14 E-value=1.9 Score=33.51 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=18.6
Q ss_pred cCCCEEEEEeccccHHHHHHHhh
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~ 40 (143)
...++|||+|||+|.-.+.....
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~ 137 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVK 137 (282)
T ss_pred ecCceeEecCCcccccchhhhhh
Confidence 36799999999999888775544
No 302
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=72.66 E-value=26 Score=27.17 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=18.8
Q ss_pred cchHHHHHHHHhcccCCeEEEEeccC
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
.+....+..+.+.|.||.+|++....
T Consensus 167 ~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 167 DDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp CTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred cCHHHHHHHHHHhCCCCceEEEEecC
Confidence 34567888899999999999986554
No 303
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=72.46 E-value=21 Score=27.96 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=40.4
Q ss_pred hcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------------------cC-CCCceeEEEEcC
Q 032292 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------------------SE-NEGSFDYAFVDA 60 (143)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------------------~~-~~~~fD~v~~d~ 60 (143)
..+.++||-.|+|. |..++.+|++.+..-. .. ....+|+|+ |+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vi-d~ 252 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVI-DA 252 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEE-EC
Confidence 45678999998753 5566667776543100 00 112478776 44
Q ss_pred CccchHHHHHHHHhcccCCeEEEEe
Q 032292 61 DKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 61 ~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
... ...++...+.+++||.+++-
T Consensus 253 ~g~--~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 253 VGR--PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCC--HHHHHHHHHHhccCCEEEEE
Confidence 321 23566778999999998864
No 304
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=71.86 E-value=15 Score=28.61 Aligned_cols=35 Identities=9% Similarity=-0.002 Sum_probs=26.3
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.++||+|++..-..+-...++.+.+++.++..++.
T Consensus 68 ~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 68 AEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred ccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 35799999876444456778888899999987753
No 305
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=71.61 E-value=21 Score=28.55 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCEEEEEeccccHHHHHHHhhCCCCCccCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
+.+||-.| |.||.+-.-+.++.. ..|+++.+|--...+...++.+...+.++.-+.|++...
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~-------~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl 63 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLK-------RGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDL 63 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHh-------CCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEecc
Confidence 57888887 568877766655543 568888888766667778888888888777777765543
No 306
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=71.37 E-value=3.4 Score=27.25 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=36.1
Q ss_pred CEEEEEeccccHHHHHHHhhCCC----CCc------------cC--CCCceeEEEEcCCccchHHHHHHHHhcccCCe--
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPE----DGQ------------SE--NEGSFDYAFVDADKDNYCNYHERLMKLLKVGG-- 80 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~----~~~------------~~--~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG-- 80 (143)
++|| +=||+|.+|-.+++.+.+ .+. .. ....||+|++..... -.++.+.....+.+
T Consensus 2 kkIL-lvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~---~~~~~i~~~~~~~~ip 77 (104)
T PRK09590 2 KKAL-IICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTK---MYFKQFEEAGAKVGKP 77 (104)
T ss_pred cEEE-EECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHH---HHHHHHHHHhhhcCCC
Confidence 3565 449999998888887643 111 11 234699999864433 23445555555544
Q ss_pred EEEEeccC
Q 032292 81 IAVYDNTL 88 (143)
Q Consensus 81 ~li~d~~~ 88 (143)
+.+++...
T Consensus 78 v~~I~~~~ 85 (104)
T PRK09590 78 VVQIPPQA 85 (104)
T ss_pred EEEeCHHH
Confidence 34444333
No 307
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=70.80 E-value=13 Score=28.91 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=36.6
Q ss_pred CCCEEEEEecccc----HHHHHHHhhCCCCCc-----------------------cCCCCceeEEEEcCC----------
Q 032292 19 NAKKTIEIGVFTG----YSLLLTALTIPEDGQ-----------------------SENEGSFDYAFVDAD---------- 61 (143)
Q Consensus 19 ~~~~vLeiG~g~G----~~t~~la~~~~~~~~-----------------------~~~~~~fD~v~~d~~---------- 61 (143)
...+||-+|.|+= --+..|.+-+|+++. -..+.+||+|++|--
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~ 140 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMPPDKFDLIISDMYDGRTKNCDGE 140 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEESS-EEEEEE----TTS-SS-S-
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCCCCcccEEEEecccccccccccc
Confidence 3479999998753 345667777776543 123689999999852
Q ss_pred ---ccchHHHH-HHHHhcccCCeEEEEe
Q 032292 62 ---KDNYCNYH-ERLMKLLKVGGIAVYD 85 (143)
Q Consensus 62 ---~~~~~~~~-~~~~~~L~~gG~li~d 85 (143)
+..+-.++ .-+...|+-||-+++.
T Consensus 141 n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 141 NNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp -----THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 11222232 3345899999999875
No 308
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=70.62 E-value=12 Score=27.05 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=22.4
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
.+..|++++-- ...+....+.|+|||++++|...
T Consensus 65 ~~~~D~lva~d-----~~~~~~~~~~l~~gg~ii~ns~~ 98 (197)
T PRK06274 65 EGQADLLLALE-----PAEVARNLHFLKKGGKIIVNAYA 98 (197)
T ss_pred CCCCCEEEEcC-----HHHHHHHHhhcCCCcEEEEECCC
Confidence 34667777532 12234567889999999998543
No 309
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=69.51 E-value=10 Score=29.40 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=24.8
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li 83 (143)
...|+|++......-...++++.+.|++|.++.
T Consensus 63 ~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 63 AEADLVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ccCCEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 347999988766666778888888888876663
No 310
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=69.42 E-value=4.3 Score=32.31 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=16.4
Q ss_pred cCCCEEEEEeccccHHHHHHHhh
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~ 40 (143)
.++-+|+|+||.+|..|+.+...
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHHH
Confidence 34568999999999999876544
No 311
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=69.24 E-value=8.8 Score=32.48 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=19.5
Q ss_pred cCCCEEEEEeccc-cHHHHHHHhhCCC
Q 032292 18 VNAKKTIEIGVFT-GYSLLLTALTIPE 43 (143)
Q Consensus 18 ~~~~~vLeiG~g~-G~~t~~la~~~~~ 43 (143)
.++.+|+-+|+|. |..++.+++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA 188 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA 188 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 3578999999975 5777777777653
No 312
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=68.35 E-value=41 Score=24.98 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=42.6
Q ss_pred HhhcCCCEEEEEeccc-cHHHHHHHhhCCCC-Cc----------------------cC-----CCCceeEEEEcCCccch
Q 032292 15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPED-GQ----------------------SE-----NEGSFDYAFVDADKDNY 65 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~-~~----------------------~~-----~~~~fD~v~~d~~~~~~ 65 (143)
+...+.++||-.|+|. |..++.+|++.+.. .. .. ....+|+|+-....
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~--- 169 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGS--- 169 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCC---
Confidence 3445678898888865 67777788776532 10 00 12358887744332
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 032292 66 CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~ 84 (143)
...++...+.|+++|.++.
T Consensus 170 ~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 170 PSALETALRLLRDRGRVVL 188 (277)
T ss_pred hHHHHHHHHHhcCCcEEEE
Confidence 2356677899999998864
No 313
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=68.25 E-value=7.9 Score=27.34 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=24.3
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
+.+|++++-- ...+....+.|+|||++++|....
T Consensus 56 ~~~Dilv~l~-----~~~~~~~~~~l~~~g~vi~ns~~~ 89 (173)
T PF01558_consen 56 GEADILVALD-----PEALERHLKGLKPGGVVIINSSLV 89 (173)
T ss_dssp SSESEEEESS-----HHHHHHCGTTCETTEEEEEETTT-
T ss_pred CCCCEEEEcC-----HHHHHHHhcCcCcCeEEEEECCCC
Confidence 6788887642 234457778999999999987543
No 314
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=67.78 E-value=6.9 Score=28.33 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=28.1
Q ss_pred CceeEEEEcCC----------ccchHHHHHHHHhcccCCeEEEEeccCCCcc
Q 032292 51 GSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT 92 (143)
Q Consensus 51 ~~fD~v~~d~~----------~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~ 92 (143)
...|++|+.-. ........+.+.+.++++-++++......|+
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt 126 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT 126 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence 35788887532 1123457788889999999999988877664
No 315
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=67.37 E-value=27 Score=26.86 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=40.7
Q ss_pred hhcCCCEEEEEecc-ccHHHHHHHhhCCC-CC-----c-----------------------------cCCCCceeEEEEc
Q 032292 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPE-DG-----Q-----------------------------SENEGSFDYAFVD 59 (143)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~~-~~-----~-----------------------------~~~~~~fD~v~~d 59 (143)
...+.++||..|+| .|..++.+|++.+. .. . ....+.+|+++-
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld- 242 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIE- 242 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE-
Confidence 34456788887765 46777778887652 10 0 011245887773
Q ss_pred CCccchHHHHHHHHhcccCCeEEEE
Q 032292 60 ADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 60 ~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+... ...++...+.|+++|.++.
T Consensus 243 ~~g~--~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 243 AVGF--EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred ccCC--HHHHHHHHHHhhcCCEEEE
Confidence 3211 2356778899999998874
No 316
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=67.03 E-value=5.1 Score=25.57 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=24.9
Q ss_pred ceeEEEEcCCcc--chHHHHHHHHhcccCCeEEEEeccCC
Q 032292 52 SFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 52 ~fD~v~~d~~~~--~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
.||++....... .....+..+.+.++++|.+++.....
T Consensus 119 ~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 119 SFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 577773222111 13567888899999999998875543
No 317
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=66.81 E-value=29 Score=27.44 Aligned_cols=66 Identities=24% Similarity=0.283 Sum_probs=39.5
Q ss_pred hcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------c------------CCCCceeEEEEcCC
Q 032292 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------S------------ENEGSFDYAFVDAD 61 (143)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------~------------~~~~~fD~v~~d~~ 61 (143)
..+.++||-.|+|. |..++.+|+.....-. . ...+.+|+||-...
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 44567888888753 4566667776543100 0 01125787763322
Q ss_pred ccchHHHHHHHHhcccCCeEEEEe
Q 032292 62 KDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 62 ~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
....++.+.+.|+++|.++.-
T Consensus 269 ---~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 269 ---SVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred ---ChHHHHHHHHHHhcCCEEEEE
Confidence 134567788999999988753
No 318
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=66.77 E-value=7.3 Score=31.40 Aligned_cols=63 Identities=16% Similarity=0.001 Sum_probs=40.2
Q ss_pred CEEEEEeccccHHHHHHHhhCCCCCc--------cC-----CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPEDGQ--------SE-----NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~~~~--------~~-----~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
++|.-|| |.|..+.++|..+...|. .. .-...|+|++..........++.+.+ ++| |.+++|.
T Consensus 99 ~~I~IiG-G~GlmG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~-~~iv~Dv 174 (374)
T PRK11199 99 RPVVIVG-GKGQLGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPE-DCILVDL 174 (374)
T ss_pred ceEEEEc-CCChhhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCC-CcEEEEC
Confidence 6788888 347777778777654332 10 12357999988765555667777667 665 5555553
No 319
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=66.70 E-value=31 Score=26.66 Aligned_cols=66 Identities=9% Similarity=-0.035 Sum_probs=40.8
Q ss_pred HhhcCCCEEEEEec--cccHHHHHHHhhCCCCCc-------------c----------C------------CCCceeEEE
Q 032292 15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ-------------S----------E------------NEGSFDYAF 57 (143)
Q Consensus 15 ~~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~-------------~----------~------------~~~~fD~v~ 57 (143)
+...+.++||-.|+ +.|..++.+|+..+..-. . . ..+.+|+|+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEE
Confidence 34556789999986 566777778877543100 0 0 012456665
Q ss_pred EcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 58 VDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 58 ~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
|+... ..++.+.+.|+++|.++.
T Consensus 227 -d~~g~---~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 227 -DNVGG---KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred -ECCCH---HHHHHHHHHhccCcEEEE
Confidence 33221 356788899999999875
No 320
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=66.59 E-value=17 Score=30.51 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=45.7
Q ss_pred hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------c------------------------CCCCceeEEEEcCCccch
Q 032292 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------S------------------------ENEGSFDYAFVDADKDNY 65 (143)
Q Consensus 17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------~------------------------~~~~~fD~v~~d~~~~~~ 65 (143)
..+.++|+-|||| ..+...|..+...|. + ..-..-|+|++-......
T Consensus 33 ~LkgKtIaIIGyG--SqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q 110 (487)
T PRK05225 33 YLKGKKIVIVGCG--AQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQH 110 (487)
T ss_pred HhCCCEEEEEccC--HHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHH
Confidence 3467999999996 555555555543322 0 012456777765433334
Q ss_pred HHHHHHHHhcccCCeEEEEe---ccCCCc
Q 032292 66 CNYHERLMKLLKVGGIAVYD---NTLWGG 91 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~d---~~~~~g 91 (143)
....+.+.++|++|..|.|. |+.+.+
T Consensus 111 ~~v~~~i~p~LK~Ga~L~fsHGFni~~~~ 139 (487)
T PRK05225 111 SDVVRAVQPLMKQGAALGYSHGFNIVEVG 139 (487)
T ss_pred HHHHHHHHhhCCCCCEEEecCCceeeeCc
Confidence 44568899999999999875 555544
No 321
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.55 E-value=40 Score=26.18 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=41.4
Q ss_pred hhcCCCEEEEEecc-ccHHHHHHHhhCCCCCc----------------------------------c-CCCCceeEEEEc
Q 032292 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ----------------------------------S-ENEGSFDYAFVD 59 (143)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~~~~~----------------------------------~-~~~~~fD~v~~d 59 (143)
...+.++||-.|+| .|..++.+|+..+..-. . .....+|+|+-.
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~ 242 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIA 242 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEEC
Confidence 34567888888875 45666777777643100 0 012357877743
Q ss_pred CCccchHHHHHHHHhcccCCeEEEEe
Q 032292 60 ADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 60 ~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
... ...+..+.+.|+++|.++.-
T Consensus 243 ~g~---~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 243 GGG---QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCC---HHHHHHHHHHhhcCCEEEEe
Confidence 321 24567888999999988753
No 322
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=66.49 E-value=2.6 Score=27.23 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=30.2
Q ss_pred EeccccHHHHHHHhhCCC----CCc------------cCCCCceeEEEEcCCccchHHHHHHHHhcccCC
Q 032292 26 IGVFTGYSLLLTALTIPE----DGQ------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 79 (143)
Q Consensus 26 iG~g~G~~t~~la~~~~~----~~~------------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~g 79 (143)
+=||+|.+|-.+++.+.+ .+. ....+.||+|++.-.. ...++++.+...+.
T Consensus 4 ~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv---~~~~~~i~~~~~~~ 70 (96)
T cd05564 4 LVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQV---RYMLDEVKKKAAEY 70 (96)
T ss_pred EEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhH---HHHHHHHHHHhccC
Confidence 348888888888877543 111 2234679999986443 33455555544333
No 323
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=66.48 E-value=7.2 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=20.6
Q ss_pred cCCCEEEEEeccccH-HHHHHHhhCCC
Q 032292 18 VNAKKTIEIGVFTGY-SLLLTALTIPE 43 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~-~t~~la~~~~~ 43 (143)
+.|++||-||+.+|| .+..++.+++.
T Consensus 39 ngPKkVLviGaSsGyGLa~RIsaaFG~ 65 (398)
T COG3007 39 NGPKKVLVIGASSGYGLAARISAAFGP 65 (398)
T ss_pred CCCceEEEEecCCcccHHHHHHHHhCC
Confidence 368999999999998 55567777764
No 324
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=66.32 E-value=47 Score=25.52 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=42.3
Q ss_pred HhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEc
Q 032292 15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVD 59 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d 59 (143)
+...+.++||-.|+|. |..++.+|+....... ......+|+++-.
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~ 234 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDA 234 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEEC
Confidence 3445677999998764 7777888887543100 0012347887754
Q ss_pred CCccchHHHHHHHHhcccCCeEEEE
Q 032292 60 ADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 60 ~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
... ...+..+.+.|+++|.++.
T Consensus 235 ~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 235 TGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCC---HHHHHHHHHHHhcCCEEEE
Confidence 321 2346677889999998874
No 325
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=65.89 E-value=62 Score=25.26 Aligned_cols=38 Identities=8% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHHHHHHH----HHhhcCCCEEEEEeccccHHHHHHHhhCCC
Q 032292 6 IHGQLMAM----LLRLVNAKKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 6 ~~~~~l~~----l~~~~~~~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
.+..+++. ++....+...+|+|+|+-.-|..+..++.+
T Consensus 61 tEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~ 102 (321)
T COG4301 61 TEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAH 102 (321)
T ss_pred hHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhh
Confidence 34444544 445568999999999999888888887755
No 326
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=65.38 E-value=5 Score=28.73 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=18.3
Q ss_pred CEEEEEeccccHHHHHHHhhCC
Q 032292 21 KKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~ 42 (143)
+.|+|+-||.|-.|+.+|+...
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~ 22 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD 22 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-
T ss_pred CEEEEeccCcCHHHHHHHHhCC
Confidence 4689999999999999999864
No 327
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=65.30 E-value=5.2 Score=33.77 Aligned_cols=40 Identities=15% Similarity=0.016 Sum_probs=30.4
Q ss_pred cChHHHHHHHHHHhh----cCCCEEEEEeccccHHHHHHHhhCC
Q 032292 3 LLTIHGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
+....++.|+..+.. ...+.+||+=||||.+++.+|+...
T Consensus 363 ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~ 406 (534)
T KOG2187|consen 363 TNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK 406 (534)
T ss_pred cCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc
Confidence 444566667666643 4557889999999999999998864
No 328
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=65.15 E-value=40 Score=26.49 Aligned_cols=66 Identities=11% Similarity=-0.054 Sum_probs=41.5
Q ss_pred HhhcCCCEEEEEec--cccHHHHHHHhhCCCCCc----------------------c-C------------CCCceeEEE
Q 032292 15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ----------------------S-E------------NEGSFDYAF 57 (143)
Q Consensus 15 ~~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~----------------------~-~------------~~~~fD~v~ 57 (143)
+...+.++||-.|+ +.|..++.+|++.+.... . . ..+.+|+||
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 33456789999987 467788888887653100 0 0 012366666
Q ss_pred EcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 58 VDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 58 ~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
|+.. ...++.+++.|++||.++.
T Consensus 234 -d~vG---~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 234 -DNVG---GDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred -ECCC---HHHHHHHHHHhccCCEEEE
Confidence 3322 1356788899999999875
No 329
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=62.98 E-value=2.6 Score=27.60 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=35.6
Q ss_pred EEEEeccccHHHHHHHhhCCC----CCc------------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeE
Q 032292 23 TIEIGVFTGYSLLLTALTIPE----DGQ------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 81 (143)
Q Consensus 23 vLeiG~g~G~~t~~la~~~~~----~~~------------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~ 81 (143)
|| +=||.|.+|-.+++.+.+ .+. +...+.+|+|++... ..-.++.+.+.+.+-|+
T Consensus 3 Il-l~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQ---v~~~~~~i~~~~~~~~i 73 (99)
T cd05565 3 VL-VLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQ---MASYYDELKKDTDRLGI 73 (99)
T ss_pred EE-EECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcCh---HHHHHHHHHHHhhhcCC
Confidence 44 458999999988888653 121 234567899888654 34445666666666664
No 330
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=62.21 E-value=7.3 Score=30.51 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=28.1
Q ss_pred CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292 48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
...+.||+||+.+...+++. +.+.+.++|+++|+++..
T Consensus 218 ky~~~Fd~ifvs~s~vh~L~--p~l~~~~a~~A~LvvEta 255 (289)
T PF14740_consen 218 KYQNFFDLIFVSCSMVHFLK--PELFQALAPDAVLVVETA 255 (289)
T ss_pred hhcCCCCEEEEhhhhHhhcc--hHHHHHhCCCCEEEEEcc
Confidence 34688999999876433322 246789999999999875
No 331
>PLN02256 arogenate dehydrogenase
Probab=62.00 E-value=27 Score=27.32 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=37.7
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------cC----CCCceeEEEEcCCccchHHHHHH
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------SE----NEGSFDYAFVDADKDNYCNYHER 71 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------~~----~~~~fD~v~~d~~~~~~~~~~~~ 71 (143)
.+..+|.=||+ |..+-.+++.+...+. .. .....|+|++..........+++
T Consensus 34 ~~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~ 111 (304)
T PLN02256 34 SRKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRS 111 (304)
T ss_pred CCCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHh
Confidence 35568888886 5566666655432221 00 12357999987655555666777
Q ss_pred H-HhcccCCeEE
Q 032292 72 L-MKLLKVGGIA 82 (143)
Q Consensus 72 ~-~~~L~~gG~l 82 (143)
+ ...++++.++
T Consensus 112 l~~~~l~~~~iv 123 (304)
T PLN02256 112 LPLQRLKRSTLF 123 (304)
T ss_pred hhhhccCCCCEE
Confidence 6 5667777644
No 332
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=61.69 E-value=7 Score=28.08 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=36.0
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------cCCCCceeEEEEcCCccchHHHH-HH
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------SENEGSFDYAFVDADKDNYCNYH-ER 71 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------~~~~~~fD~v~~d~~~~~~~~~~-~~ 71 (143)
+.++|.-||.| .-+...|..+++++. ...-..-|+|++-..-....+.+ ++
T Consensus 3 ~~k~IAViGyG--sQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~ 80 (165)
T PF07991_consen 3 KGKTIAVIGYG--SQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEE 80 (165)
T ss_dssp CTSEEEEES-S--HHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHH
T ss_pred CCCEEEEECCC--hHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHH
Confidence 45778888774 445556666554433 11123567887755333334444 78
Q ss_pred HHhcccCCeEEEEe
Q 032292 72 LMKLLKVGGIAVYD 85 (143)
Q Consensus 72 ~~~~L~~gG~li~d 85 (143)
+.+.|++|-.|+|.
T Consensus 81 I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 81 IAPNLKPGATLVFA 94 (165)
T ss_dssp HHHHS-TT-EEEES
T ss_pred HHhhCCCCCEEEeC
Confidence 88999999999885
No 333
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.24 E-value=33 Score=26.80 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=19.4
Q ss_pred hcCCCEEEEEeccc-cHHHHHHHhhCC
Q 032292 17 LVNAKKTIEIGVFT-GYSLLLTALTIP 42 (143)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~t~~la~~~~ 42 (143)
..+.++||-+|+|. |..++.+|++.+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G 190 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG 190 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 34578999999865 677777787764
No 334
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=61.15 E-value=83 Score=25.09 Aligned_cols=88 Identities=13% Similarity=0.012 Sum_probs=52.4
Q ss_pred CcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC--------------C-CCCc--------c-CCCCceeEEE
Q 032292 2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI--------------P-EDGQ--------S-ENEGSFDYAF 57 (143)
Q Consensus 2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~--------------~-~~~~--------~-~~~~~fD~v~ 57 (143)
++++.+ ++|.........++||=+|--.......++... . ..+. + ....+||.|+
T Consensus 3 ~~~~~s-~~~~r~~~~~~~~~~l~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~d~~~ 81 (342)
T PRK09489 3 ALTPAS-EVLLRHSDDFEQRRVLFAGDLQDDLPAQLDAASVRVHTQQFHHWQVLSRQMGDNARFSLVATAEDVADCDTLI 81 (342)
T ss_pred cCChHH-HHHHhhHHHhCCCcEEEEcCcchhhHHhhhccceEEehhhhHHHHHHHhhcCCceEeccccCCccCCCCCEEE
Confidence 355666 555555555677889988866555554443110 0 0010 1 1225799988
Q ss_pred EcCCcc--chHHHHHHHHhcccCCeEEEEeccCCC
Q 032292 58 VDADKD--NYCNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 58 ~d~~~~--~~~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
+--.+. ...-.+..+.+.|+|||.|++..-...
T Consensus 82 ~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~ 116 (342)
T PRK09489 82 YYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRS 116 (342)
T ss_pred EECCCCHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Confidence 876553 233457788899999999987654433
No 335
>PRK08655 prephenate dehydrogenase; Provisional
Probab=60.93 E-value=16 Score=30.21 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=23.5
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li 83 (143)
...|+|++..........++.+.+.+++|.+++
T Consensus 57 ~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 57 KDADIVIISVPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred ccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence 457999987655555667778888888877554
No 336
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=59.87 E-value=73 Score=24.01 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=39.5
Q ss_pred CCCEEEEEecc-ccHHHHHHHhhCCCCCc----------------------c-----------CCCCceeEEEEcCCccc
Q 032292 19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQ----------------------S-----------ENEGSFDYAFVDADKDN 64 (143)
Q Consensus 19 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~----------------------~-----------~~~~~fD~v~~d~~~~~ 64 (143)
+.++||-+|+| .|..++.+|++....-. . .....+|+|+-....
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~-- 197 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGA-- 197 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCC--
Confidence 56789988875 35566667776543100 0 011247776633221
Q ss_pred hHHHHHHHHhcccCCeEEEEec
Q 032292 65 YCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 65 ~~~~~~~~~~~L~~gG~li~d~ 86 (143)
...++.+.+.|+++|.++.-.
T Consensus 198 -~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 198 -TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -hHHHHHHHHHhcCCCEEEEec
Confidence 345778889999999998643
No 337
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=59.42 E-value=75 Score=24.04 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=20.9
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCC
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
+..++.||||-.+|.++++.+..+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~ 40 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPA 40 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCc
Confidence 4556999999999999999887653
No 338
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=59.41 E-value=5.8 Score=27.68 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=23.2
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+.-|+|++--........++++.++++++-.+++
T Consensus 68 ~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 68 EDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp TT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred CcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 3468888776555667789999999988877764
No 339
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=59.13 E-value=17 Score=29.44 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=18.8
Q ss_pred CCEEEEEeccccHHHHHHHhhC
Q 032292 20 AKKTIEIGVFTGYSLLLTALTI 41 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~ 41 (143)
+-.++|||.|+|..+.-|++.+
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHH
Confidence 4689999999999998887765
No 340
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=58.54 E-value=54 Score=25.19 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------cC----------CCCceeEEEEcCCccch
Q 032292 19 NAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------SE----------NEGSFDYAFVDADKDNY 65 (143)
Q Consensus 19 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------~~----------~~~~fD~v~~d~~~~~~ 65 (143)
+.++||-.|+|. |..++.+|++.+.... .. ..+.+|+++-....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA--- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence 567888888775 6677778877643100 00 01237777643321
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 032292 66 CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~ 84 (143)
...++.+.+.|+++|.++.
T Consensus 242 ~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 242 PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred HHHHHHHHHHHhcCCEEEE
Confidence 2346778899999999875
No 341
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=57.22 E-value=10 Score=27.39 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=25.5
Q ss_pred CCCceeEEEEcCC-----------c---cchHHHHHHHHhcccCCeEEEEe
Q 032292 49 NEGSFDYAFVDAD-----------K---DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 49 ~~~~fD~v~~d~~-----------~---~~~~~~~~~~~~~L~~gG~li~d 85 (143)
..++||++.+-+. . ......+.++..+||+||.+.+.
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 4678999865331 1 12345677788999999999875
No 342
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=57.08 E-value=80 Score=23.86 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=40.7
Q ss_pred hhcCCCEEEEEec--cccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEc
Q 032292 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVD 59 (143)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d 59 (143)
...+..+||-.|+ +.|..++.+|++.+.... ......+|+|+ |
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~-d 214 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVAL-D 214 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEE-E
Confidence 4456678888775 467888888888653100 00113588887 3
Q ss_pred CCccchHHHHHHHHhcccCCeEEEE
Q 032292 60 ADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 60 ~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+... .....+.+.|+++|.++.
T Consensus 215 ~~g~---~~~~~~~~~l~~~g~~v~ 236 (324)
T cd08292 215 SVGG---KLAGELLSLLGEGGTLVS 236 (324)
T ss_pred CCCC---hhHHHHHHhhcCCcEEEE
Confidence 3222 134677899999998874
No 343
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=56.64 E-value=40 Score=27.47 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=49.6
Q ss_pred CCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcCCc
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDADK 62 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~~~ 62 (143)
+.+|+|-=+|||.=++..|...+.. + ......||+|=+|--
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPF- 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPF- 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCC-
Confidence 8999999999999999999887642 1 122367887766643
Q ss_pred cchHHHHHHHHhcccCCeEEEEe
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.....+++.+.+.++.||++-+.
T Consensus 131 GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 131 GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCCchHHHHHHHHhhcCCEEEEE
Confidence 34567888999999999999764
No 344
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=56.49 E-value=62 Score=25.54 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=37.7
Q ss_pred cCCCEEEEEecc-ccHHHHHHHhhCCCCC--------c--------------cCC--------CCceeEEEEcCCccchH
Q 032292 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDG--------Q--------------SEN--------EGSFDYAFVDADKDNYC 66 (143)
Q Consensus 18 ~~~~~vLeiG~g-~G~~t~~la~~~~~~~--------~--------------~~~--------~~~fD~v~~d~~~~~~~ 66 (143)
.+.++||-.|+| .|..++.+|+.....- + ... .+.+|+|| |+.. -.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vi-d~~g--~~ 258 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYII-DTVS--AV 258 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEE-ECCC--CH
Confidence 356788888875 3556666777654210 0 000 01356666 3321 13
Q ss_pred HHHHHHHhcccCCeEEEE
Q 032292 67 NYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 67 ~~~~~~~~~L~~gG~li~ 84 (143)
..++.+.+.|++||.++.
T Consensus 259 ~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 259 HALGPLLGLLKVNGKLIT 276 (360)
T ss_pred HHHHHHHHHhcCCcEEEE
Confidence 357778899999999875
No 345
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=56.01 E-value=30 Score=26.74 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=23.0
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li 83 (143)
...|+|++..........++.+.+.+++|.+++
T Consensus 65 ~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 65 KGADLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 457998887654444556777778888887654
No 346
>PRK08818 prephenate dehydrogenase; Provisional
Probab=55.34 E-value=26 Score=28.37 Aligned_cols=62 Identities=13% Similarity=-0.032 Sum_probs=40.0
Q ss_pred CCEEEEEeccccHHHHHHHhhCCCC-Cc------c---------CCCCceeEEEEcCCccchHHHHHHHHhc---ccCCe
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPED-GQ------S---------ENEGSFDYAFVDADKDNYCNYHERLMKL---LKVGG 80 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~~-~~------~---------~~~~~fD~v~~d~~~~~~~~~~~~~~~~---L~~gG 80 (143)
..+|.-||. +|..+-++|+.+... +. + ..-...|+|++........+.++++.++ |+||.
T Consensus 4 ~~~I~IIGl-~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~ 82 (370)
T PRK08818 4 QPVVGIVGS-AGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ 82 (370)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe
Confidence 357788875 356777777666531 11 0 0123579999988777777888887765 67755
Q ss_pred EE
Q 032292 81 IA 82 (143)
Q Consensus 81 ~l 82 (143)
++
T Consensus 83 iV 84 (370)
T PRK08818 83 LW 84 (370)
T ss_pred EE
Confidence 44
No 347
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.89 E-value=22 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=22.8
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPED 44 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~ 44 (143)
.+++.||-.||..|-.+-.+|+.+...
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~ 31 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARN 31 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhC
Confidence 468999999999999999888886543
No 348
>PRK06444 prephenate dehydrogenase; Provisional
Probab=54.20 E-value=14 Score=27.19 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=33.0
Q ss_pred EEEEEeccccHHHHHHHhhCCCCCccCCCCceeEEEEcCCccchHHHHHH
Q 032292 22 KTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHER 71 (143)
Q Consensus 22 ~vLeiG~g~G~~t~~la~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~~~~ 71 (143)
+|.-|| |.|-.+.|++..+...|..-.-..+|+|++........+.+++
T Consensus 2 ~~~iiG-~~G~mG~~~~~~~~~~g~~v~~~~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 2 MEIIIG-KNGRLGRVLCSILDDNGLGVYIKKADHAFLSVPIDAALNYIES 50 (197)
T ss_pred EEEEEe-cCCcHHHHHHHHHHhCCCEEEECCCCEEEEeCCHHHHHHHHHH
Confidence 567788 7799999999888765553334567999987654444444433
No 349
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=54.18 E-value=76 Score=24.41 Aligned_cols=60 Identities=8% Similarity=0.007 Sum_probs=38.5
Q ss_pred CEEEEEec--cccHHHHHHHhhCCC-CCc----------------------------------cCCCCceeEEEEcCCcc
Q 032292 21 KKTIEIGV--FTGYSLLLTALTIPE-DGQ----------------------------------SENEGSFDYAFVDADKD 63 (143)
Q Consensus 21 ~~vLeiG~--g~G~~t~~la~~~~~-~~~----------------------------------~~~~~~fD~v~~d~~~~ 63 (143)
++||-.|. +.|..++.+|++.+. .-. ....+.+|+|+ |+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vi-d~~g~ 234 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYF-DNVGG 234 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEE-ECCCc
Confidence 78998885 577788888887653 100 00113477776 43222
Q ss_pred chHHHHHHHHhcccCCeEEEE
Q 032292 64 NYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 64 ~~~~~~~~~~~~L~~gG~li~ 84 (143)
..++.+.+.|+++|.++.
T Consensus 235 ---~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 235 ---EISDTVISQMNENSHIIL 252 (345)
T ss_pred ---HHHHHHHHHhccCCEEEE
Confidence 135678899999999875
No 350
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=53.91 E-value=27 Score=27.85 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=23.7
Q ss_pred CceeEEEEcCCccchHHHH-HHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~-~~~~~~L~~gG~li~ 84 (143)
..-|+|++-.........+ +.+.+.|++|.+|++
T Consensus 72 ~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~ 106 (330)
T PRK05479 72 KWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAF 106 (330)
T ss_pred hcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3468888876544445555 678889999988754
No 351
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=53.52 E-value=21 Score=25.82 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=21.6
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
+.|++++-.. . .+....+.|+|||++++|..
T Consensus 68 ~~D~lva~d~----~-~~~~~~~~lk~gg~ii~n~~ 98 (197)
T PRK06853 68 KADLLLAFEP----L-EALRYLPYLKKGGKVVVNTQ 98 (197)
T ss_pred CCCEEEEeCH----H-HHHHHHHhcCCCcEEEEECC
Confidence 6788776432 2 23456678999999999853
No 352
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.32 E-value=76 Score=27.08 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=42.8
Q ss_pred CCCceeEEEEcCCcc-----chHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 032292 49 NEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 123 (143)
Q Consensus 49 ~~~~fD~v~~d~~~~-----~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~ 123 (143)
....||+|++|...+ ..-..+..+.+.-+|.=+|.+-+.+-.. + ....+++|++.+...+
T Consensus 463 ~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~----d-----------sv~q~~~fn~al~~~~ 527 (587)
T KOG0781|consen 463 RNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN----D-----------SVDQLKKFNRALADHS 527 (587)
T ss_pred HhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc----H-----------HHHHHHHHHHHHhcCC
Confidence 367899999996432 2234577778899999988876665321 1 4456899999998665
No 353
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=53.12 E-value=84 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=22.3
Q ss_pred cChHHHHHHHHHHhhcCCCEEEEEeccccHHHH
Q 032292 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLL 35 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~ 35 (143)
+++++-+.+..+......-.+|.=..|||=++.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~ 34 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL 34 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH
Confidence 467777888877654444567777888896654
No 354
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=52.72 E-value=23 Score=26.75 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=27.3
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+++|+||+.....+....++.+.+++.+++.+++
T Consensus 57 ~~~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~ 91 (293)
T TIGR00745 57 LPPADLVIITVKAYQTEEAAALLLPLIGKNTKVLF 91 (293)
T ss_pred cCCCCEEEEeccchhHHHHHHHhHhhcCCCCEEEE
Confidence 35799999876545567788888899999887764
No 355
>PLN02827 Alcohol dehydrogenase-like
Probab=52.20 E-value=91 Score=24.81 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=19.7
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCC-eEEEE
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVY 84 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~g-G~li~ 84 (143)
.+|+|+ |+.. ....+...++.+++| |.++.
T Consensus 263 g~d~vi-d~~G--~~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 263 GADYSF-ECVG--DTGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCCEEE-ECCC--ChHHHHHHHHhhccCCCEEEE
Confidence 467666 3321 123567788999998 99875
No 356
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=51.89 E-value=43 Score=26.74 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=44.7
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------cCCCCceeEEEEcCCccchHHHHH-
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------SENEGSFDYAFVDADKDNYCNYHE- 70 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------~~~~~~fD~v~~d~~~~~~~~~~~- 70 (143)
.+.++|.-||||+ -+..-|..++++|. ...-..-|+|.+-..-....+.++
T Consensus 16 LkgK~iaIIGYGs--QG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy~~ 93 (338)
T COG0059 16 LKGKKVAIIGYGS--QGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKEVYEK 93 (338)
T ss_pred hcCCeEEEEecCh--HHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHHHHHH
Confidence 4678999999964 44444555555443 112345677776543333445555
Q ss_pred HHHhcccCCeEEEEe---ccCCC
Q 032292 71 RLMKLLKVGGIAVYD---NTLWG 90 (143)
Q Consensus 71 ~~~~~L~~gG~li~d---~~~~~ 90 (143)
.+.+.|+.|-.|.|. |+.+.
T Consensus 94 ~I~p~Lk~G~aL~FaHGfNihf~ 116 (338)
T COG0059 94 EIAPNLKEGAALGFAHGFNIHFG 116 (338)
T ss_pred HhhhhhcCCceEEeccccceecc
Confidence 888999999998875 55543
No 357
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=51.51 E-value=65 Score=25.25 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=38.7
Q ss_pred cCCCEEEEEecc-ccHHHHHHHhhCCCC-Cc----------------------------------cCCCCceeEEEEcCC
Q 032292 18 VNAKKTIEIGVF-TGYSLLLTALTIPED-GQ----------------------------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 18 ~~~~~vLeiG~g-~G~~t~~la~~~~~~-~~----------------------------------~~~~~~fD~v~~d~~ 61 (143)
.+..+||-.|+| .|..++.+|+..+.. -. ......+|+|+- +.
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld-~v 264 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVE-AL 264 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEE-eC
Confidence 456788777764 566667777765432 00 001245888773 32
Q ss_pred ccchHHHHHHHHhcccCCeEEEE
Q 032292 62 KDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 62 ~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
... ..++.+.++|+++|.++.
T Consensus 265 g~~--~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 265 GKP--ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCH--HHHHHHHHHHhcCCEEEE
Confidence 221 256778899999998874
No 358
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=51.49 E-value=49 Score=26.12 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ 46 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~ 46 (143)
+++..|. ..++..++|.-+|.|--|..+++.+++ ++
T Consensus 11 Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~ 46 (305)
T TIGR00006 11 EVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGT-GR 46 (305)
T ss_pred HHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCC-CE
Confidence 3444442 345679999999999999999998875 55
No 359
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=51.46 E-value=61 Score=26.50 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=26.5
Q ss_pred ceeEEEEcCCcc----------chHHHHHHHHhcccCCeEEEEeccCCCc
Q 032292 52 SFDYAFVDADKD----------NYCNYHERLMKLLKVGGIAVYDNTLWGG 91 (143)
Q Consensus 52 ~fD~v~~d~~~~----------~~~~~~~~~~~~L~~gG~li~d~~~~~g 91 (143)
..|+||+..... ......+.+.+.+++|.++|...+...|
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 468998765432 2334567778899998888776655443
No 360
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=50.90 E-value=80 Score=24.62 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=22.6
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
..+|+||.......+...++...+....++.+++|-..
T Consensus 237 ~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 237 NEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred hcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 35799887765555533344444444346788887544
No 361
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=50.87 E-value=78 Score=21.64 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=34.4
Q ss_pred HhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE-EeecCCeeEEEEE
Q 032292 73 MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-HVALGDGITICRR 141 (143)
Q Consensus 73 ~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~-~lp~~~Gl~~~~k 141 (143)
..+.+..|++++| +. ..+ ...+.++.+.+..+|.+... +-|-|.|+-+.++
T Consensus 25 ~~l~~~sglv~lD-iD----------~l~-------~ee~~~~r~~l~~~p~t~~~f~SpSG~GvKi~v~ 76 (136)
T PF08800_consen 25 DNLKAYSGLVVLD-ID----------HLD-------PEEAEELRQLLFEDPYTLAAFVSPSGRGVKIIVP 76 (136)
T ss_pred hhhhhCCCcEEEE-eC----------CCC-------HHHHHHHHHHHhcCCcEEEEEEcCCCCeEEEEEE
Confidence 4667888999886 11 000 12477777888899986554 4478899988765
No 362
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=50.81 E-value=87 Score=22.14 Aligned_cols=74 Identities=28% Similarity=0.342 Sum_probs=37.1
Q ss_pred HHHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCC-------------Cc-------------cCCCCceeEEEEcCC
Q 032292 9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPED-------------GQ-------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 9 ~~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~-------------~~-------------~~~~~~fD~v~~d~~ 61 (143)
++...|... .+.++|.=.|+|+...|..-.-.+..+ |+ .......|.|++-++
T Consensus 56 ~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~l~~~~pd~vivlaw 135 (160)
T PF08484_consen 56 ELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEELKERKPDYVIVLAW 135 (160)
T ss_dssp HHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG--SS--SEEEES-G
T ss_pred HHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHHHhhCCCCEEEEcCh
Confidence 344444333 256899999999887775433333211 11 123556899998765
Q ss_pred ccchH-HHHHHHHhcccCCeEEEE
Q 032292 62 KDNYC-NYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 62 ~~~~~-~~~~~~~~~L~~gG~li~ 84 (143)
+|. +..+.+...+..||.+|+
T Consensus 136 --~y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 136 --NYKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp --GGHHHHHHHTHHHHHTT-EEEE
T ss_pred --hhHHHHHHHHHHHHhcCCEEEE
Confidence 344 455666678889999987
No 363
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=50.36 E-value=72 Score=26.45 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.1
Q ss_pred HHHHHHHhcccCCeEEEEeccCCCcc
Q 032292 67 NYHERLMKLLKVGGIAVYDNTLWGGT 92 (143)
Q Consensus 67 ~~~~~~~~~L~~gG~li~d~~~~~g~ 92 (143)
...+.+.+.|++|-+++...+.+.|+
T Consensus 109 ~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 109 SAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 46677889999999999998888875
No 364
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=49.71 E-value=1.3e+02 Score=23.75 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=49.8
Q ss_pred HHHHHHHHHhh--cCCCEEEEEeccccHHHHHHHhhCCCCCccCCCCceeEEEEcCCccc----------------hHHH
Q 032292 7 HGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDN----------------YCNY 68 (143)
Q Consensus 7 ~~~~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~~~~~~~~~~~~~fD~v~~d~~~~~----------------~~~~ 68 (143)
+-+||..+.+. ..+..||=||++.|+--..|.+.++.-| -...++++|+...+ -.++
T Consensus 46 EI~FLs~~~~~~~l~g~~VVYiGSApG~HI~~L~~lf~~lg-----~~ikw~LiDp~~h~~~Le~l~nV~Li~~f~de~~ 120 (300)
T PHA03108 46 ELFFLSKLQRHGILDGSTIVYIGSAPGTHIRYLRDHFYSLG-----VVIKWMLIDGRKHDPILNGLRDVTLVTRFVDEAY 120 (300)
T ss_pred HHHHHHHHHhcccCCCceEEEecCCCCccHHHHHHHHHhcC-----CCeEEEEECCCcccHhhcCCCcEEeeHhhcCHHH
Confidence 44677776642 2345999999999999999988876522 12333444432110 1235
Q ss_pred HHHHHhcccCCeEEEEeccC
Q 032292 69 HERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 69 ~~~~~~~L~~gG~li~d~~~ 88 (143)
++.....+.+.-+|.+.|+-
T Consensus 121 i~~~r~~~~~~~illISDIR 140 (300)
T PHA03108 121 LRRLKKQLHPSKIILISDIR 140 (300)
T ss_pred HHHHHHhccCCCEEEEEeec
Confidence 66777888888899988874
No 365
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.64 E-value=1.1e+02 Score=23.61 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=41.0
Q ss_pred HhhcCCCEEEEEeccc-cHHHHHHHhhCCCC-Cc-----------------------c--C------------CCCceeE
Q 032292 15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPED-GQ-----------------------S--E------------NEGSFDY 55 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~-~~-----------------------~--~------------~~~~fD~ 55 (143)
+...+.++||-.|+|. |..++.+|+..+.. .. . . ....+|+
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~ 237 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDV 237 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCE
Confidence 3445678888877765 67777788876532 00 0 0 0123777
Q ss_pred EEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 56 AFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 56 v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
|+-.... ...++...+.|+++|.++.
T Consensus 238 vld~~g~---~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 238 VIECTGA---ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred EEECCCC---HHHHHHHHHHhhcCCEEEE
Confidence 7643221 1246677899999998875
No 366
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=49.63 E-value=1.2e+02 Score=23.32 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=41.0
Q ss_pred HhhcCCCEEEEEeccc-cHHHHHHHhhCCCC-Cc---------------------c-----------CC-CCceeEEEEc
Q 032292 15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPED-GQ---------------------S-----------EN-EGSFDYAFVD 59 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~-~~---------------------~-----------~~-~~~fD~v~~d 59 (143)
+...+..+||-.|+|. |..++.+|+..+.. .. . .. ...+|+++-.
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA 234 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC
Confidence 3344667888888765 67777788776532 10 0 00 1237777743
Q ss_pred CCccchHHHHHHHHhcccCCeEEEE
Q 032292 60 ADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 60 ~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
... ...+..+.+.|+++|.++.
T Consensus 235 ~g~---~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 235 AGS---PATIEQALALARPGGKVVL 256 (343)
T ss_pred CCC---HHHHHHHHHHhhcCCEEEE
Confidence 211 2346677899999998874
No 367
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=49.53 E-value=71 Score=26.96 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=24.8
Q ss_pred cCCCCceeEEEEcCCc-------------cchHHHHHHHHhcccCCeEEEE
Q 032292 47 SENEGSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 47 ~~~~~~fD~v~~d~~~-------------~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+.+++||.|+.-+.. ......+.++.++|++||..+.
T Consensus 109 ~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 109 VFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 3567888888742211 1123457788899999998654
No 368
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=49.47 E-value=95 Score=24.40 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=39.7
Q ss_pred hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcC
Q 032292 16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~ 60 (143)
...+.++||-.|+|. |..++.+|++.+..-. ......+|+|+-..
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~ 262 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTT 262 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECC
Confidence 344568888888753 6677777777653200 00023467666332
Q ss_pred CccchHHHHHHHHhcccCCeEEEE
Q 032292 61 DKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 ~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.. ...++.+.+.|+++|.++.
T Consensus 263 g~---~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 263 GV---PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CC---cHHHHHHHHHhccCCEEEE
Confidence 21 2346778899999998875
No 369
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=49.40 E-value=57 Score=24.03 Aligned_cols=25 Identities=4% Similarity=0.054 Sum_probs=15.8
Q ss_pred HHHHHHhcccCCeEEEEeccCCCcc
Q 032292 68 YHERLMKLLKVGGIAVYDNTLWGGT 92 (143)
Q Consensus 68 ~~~~~~~~L~~gG~li~d~~~~~g~ 92 (143)
.+..+...++|..+++.-|++-.|.
T Consensus 33 ~~~~a~~~l~PD~Vi~lGDL~D~G~ 57 (195)
T cd08166 33 TYHLALNFVQPDIVIFLGDLMDEGS 57 (195)
T ss_pred HHHHHHhccCCCEEEEeccccCCCC
Confidence 4455556677777777766665554
No 370
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=49.38 E-value=5.4 Score=26.13 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=11.4
Q ss_pred CCEEEEEeccccHHHH
Q 032292 20 AKKTIEIGVFTGYSLL 35 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~ 35 (143)
|.-=+|||||.|..--
T Consensus 3 ~~gNIDIGcG~GNTmd 18 (124)
T PF07101_consen 3 PDGNIDIGCGAGNTMD 18 (124)
T ss_pred CCCccccccCCCcchh
Confidence 3444899999997543
No 371
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=49.08 E-value=1.1e+02 Score=23.96 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=40.8
Q ss_pred HhhcCCCEEEEEecc-ccHHHHHHHhhCCCC-Cc---------------------------------cC-CCCceeEEEE
Q 032292 15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPED-GQ---------------------------------SE-NEGSFDYAFV 58 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g-~G~~t~~la~~~~~~-~~---------------------------------~~-~~~~fD~v~~ 58 (143)
+...+..+||-.|+| .|..++.+|+..+.. -. .. ....+|+++-
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEE
Confidence 344566788888874 466777788776532 00 00 1245786663
Q ss_pred cCCccchHHHHHHHHhcccCCeEEEE
Q 032292 59 DADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 59 d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
... . ...++.+.+.|+++|.++.
T Consensus 258 ~~~-~--~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 258 AVG-R--AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred cCC-C--hHHHHHHHHHhhcCCeEEE
Confidence 222 1 2356778899999998874
No 372
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=49.07 E-value=74 Score=25.86 Aligned_cols=87 Identities=15% Similarity=0.054 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------- 46 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------- 46 (143)
.|....+=..++.+.++..++=..+|.+..+..+...+.++..
T Consensus 54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l 133 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEAL 133 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHH
T ss_pred cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHH
Confidence 4556667777777778888888887777665555555554211
Q ss_pred -cCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCe--EEEEeccCCC
Q 032292 47 -SENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGG--IAVYDNTLWG 90 (143)
Q Consensus 47 -~~~~~~fD~v~~d~~~--~~~~~~~~~~~~~L~~gG--~li~d~~~~~ 90 (143)
....+.-++||+.... .-....++.+.+..+..| .+++||++-.
T Consensus 134 ~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 134 EAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp HHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred HhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 1123467888887532 112234556666665544 6678887643
No 373
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.53 E-value=19 Score=25.94 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=27.4
Q ss_pred cCCCCceeEEEEcCCcc-----chHHHHHHHHhcccCCeEEEEe
Q 032292 47 SENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 ~~~~~~fD~v~~d~~~~-----~~~~~~~~~~~~L~~gG~li~d 85 (143)
++.+++.|+|+...-.. .-..+++.+.+.|||||.|-+.
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 46678888887653211 2234788899999999999764
No 374
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=48.24 E-value=24 Score=31.73 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.2
Q ss_pred CCCCceeEEEEcCCccc
Q 032292 48 ENEGSFDYAFVDADKDN 64 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~~~ 64 (143)
...+.||+|++|-.|..
T Consensus 281 f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 281 FGPGFFDLIVIDEAHRG 297 (875)
T ss_pred CCCCceeEEEechhhhh
Confidence 45677999999977653
No 375
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.81 E-value=21 Score=29.19 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=21.0
Q ss_pred CEEEEEeccccHHHHHHHhhCCC
Q 032292 21 KKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 21 ~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
..++|.|||-|..+.|++..++.
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~ 206 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQI 206 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhcc
Confidence 68999999999999999998764
No 376
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=47.23 E-value=55 Score=23.24 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=20.1
Q ss_pred cCCCEEEEEecccc-HHHHHHHhhCCC
Q 032292 18 VNAKKTIEIGVFTG-YSLLLTALTIPE 43 (143)
Q Consensus 18 ~~~~~vLeiG~g~G-~~t~~la~~~~~ 43 (143)
.+.++||-||||.= |..+.+|+.+..
T Consensus 55 ~~~~~vLVLGTgEfMy~Pl~lA~~Le~ 81 (155)
T PF12500_consen 55 RPGERVLVLGTGEFMYLPLLLAEELEQ 81 (155)
T ss_pred cCCCcEEEEccchHHHHHHHHHHHHHh
Confidence 35689999999865 567778888765
No 377
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=47.01 E-value=24 Score=25.56 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=20.5
Q ss_pred CceeEEEEcCCcc-ch------HHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKD-NY------CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~-~~------~~~~~~~~~~L~~gG~li~ 84 (143)
.+||+|+++--.. .. ...++.+.+.++.||-+++
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlm 106 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLM 106 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEE
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEE
Confidence 6899999865332 33 3567777788888865543
No 378
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=46.88 E-value=95 Score=23.67 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=41.3
Q ss_pred HhhcCCCEEEEEecc-ccHHHHHHHhhCCCC-Cc-------------------------cC-------CCCceeEEEEcC
Q 032292 15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPED-GQ-------------------------SE-------NEGSFDYAFVDA 60 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g-~G~~t~~la~~~~~~-~~-------------------------~~-------~~~~fD~v~~d~ 60 (143)
+...+..+||-+|+| .|..++.+|++.+.. .. .. ..+.+|+++-..
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 344567899999875 366777777776532 00 00 123478877432
Q ss_pred CccchHHHHHHHHhcccCCeEEEE
Q 032292 61 DKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 ~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.. ...+..+.+.|+++|.++.
T Consensus 235 ~~---~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 235 GV---PKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred CC---hHHHHHHHHHHhcCCEEEE
Confidence 21 3456677899999998874
No 379
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=46.70 E-value=65 Score=26.55 Aligned_cols=63 Identities=13% Similarity=-0.008 Sum_probs=38.3
Q ss_pred CCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------cCCCCceeEEEEcCCccchHHHHHH-HHh
Q 032292 19 NAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------SENEGSFDYAFVDADKDNYCNYHER-LMK 74 (143)
Q Consensus 19 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------~~~~~~fD~v~~d~~~~~~~~~~~~-~~~ 74 (143)
..++|+-+|+|. |...+..++.++..-. ...-..+|+|+..... ...+.. .++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG~---~~~i~~~~l~ 277 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTGN---KDIITGEHFE 277 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCCC---HHHHHHHHHh
Confidence 578999999985 5555555665543100 0011346887754321 334554 479
Q ss_pred cccCCeEEEE
Q 032292 75 LLKVGGIAVY 84 (143)
Q Consensus 75 ~L~~gG~li~ 84 (143)
.+++||+++.
T Consensus 278 ~mk~Ggilvn 287 (413)
T cd00401 278 QMKDGAIVCN 287 (413)
T ss_pred cCCCCcEEEE
Confidence 9999999975
No 380
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.67 E-value=29 Score=27.50 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=22.2
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li 83 (143)
..|+|++..........++.+.+.++++..++
T Consensus 77 ~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 77 CADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 45777766544455677888888898887554
No 381
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=46.44 E-value=26 Score=24.04 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=25.8
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.+||+|++......-....+.+.+..+.||.+++.
T Consensus 52 ~~y~~vi~P~~~~~~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 52 SGYKLVVLPDLYLLSDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred ccCCEEEECchhcCCHHHHHHHHHHHHCCCEEEEe
Confidence 46999988654333355677888999999988873
No 382
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=46.40 E-value=1.3e+02 Score=22.89 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=22.7
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
+.+|.++..... ...++.+.+.|+++|.++.-.
T Consensus 224 ~~vD~vi~~~~~---~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 224 EPLDAAIIFAPV---GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred CcccEEEEcCCc---HHHHHHHHHHhhcCCEEEEEc
Confidence 457877653222 246778899999999988643
No 383
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=46.34 E-value=23 Score=30.40 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=23.7
Q ss_pred CceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d-----~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
++.|++++. ++.+--+++++-+.+.|+|.|+-|=
T Consensus 438 eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 438 EQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 567777643 2222236789999999999998863
No 384
>PLN02740 Alcohol dehydrogenase-like
Probab=46.11 E-value=1.2e+02 Score=24.09 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=18.6
Q ss_pred HhhcCCCEEEEEeccc-cHHHHHHHhhCC
Q 032292 15 LRLVNAKKTIEIGVFT-GYSLLLTALTIP 42 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~ 42 (143)
+...+.++||-+|+|. |..++.+|+..+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G 222 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARG 222 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC
Confidence 3445678999998752 455666777664
No 385
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=45.97 E-value=17 Score=28.78 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.9
Q ss_pred cchHHHHHHHHhcccCCeEEEE
Q 032292 63 DNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~ 84 (143)
......++.+.++|+|||.|++
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~V 242 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAV 242 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEE
Confidence 3455678888899999999987
No 386
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=45.34 E-value=48 Score=25.28 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=22.7
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 82 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~l 82 (143)
...|+|++........+.++.+.+.++++.++
T Consensus 56 ~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 56 KDCDLVILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 46799998776555566777888888776544
No 387
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=45.01 E-value=32 Score=30.22 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhh-cCCCEEEEEeccccHHHHHHHhh
Q 032292 6 IHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 6 ~~~~~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~ 40 (143)
.-+.-|-.++.. .+...++|-.||+|...+..|..
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~ 211 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMM 211 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHH
Confidence 334444455555 44679999999999999887654
No 388
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=44.84 E-value=50 Score=26.50 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=43.3
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------cCCCCceeEEEEcCCccchHHHH-HHH
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------SENEGSFDYAFVDADKDNYCNYH-ERL 72 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------~~~~~~fD~v~~d~~~~~~~~~~-~~~ 72 (143)
+.++|.-||. |..+..+|+.+...|. ...-..-|+|++......-...+ +.+
T Consensus 15 kgKtVGIIG~--GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~ei 92 (335)
T PRK13403 15 QGKTVAVIGY--GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAEV 92 (335)
T ss_pred CcCEEEEEeE--cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHHH
Confidence 5688888888 5666666666543222 00123468887765432223443 568
Q ss_pred HhcccCCeEEEEe---ccCCC
Q 032292 73 MKLLKVGGIAVYD---NTLWG 90 (143)
Q Consensus 73 ~~~L~~gG~li~d---~~~~~ 90 (143)
.+.|++|.+|+|. |+.|.
T Consensus 93 l~~MK~GaiL~f~hgfni~~~ 113 (335)
T PRK13403 93 EENLREGQMLLFSHGFNIHFG 113 (335)
T ss_pred HhcCCCCCEEEECCCcceecC
Confidence 8999999999885 55443
No 389
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=44.50 E-value=8.7 Score=25.17 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=21.4
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.+.||+||=... ......++.+.++| |||.++.-
T Consensus 17 ~~~~D~ViD~~g-~~~~~~~~~~~~~l-~~G~~v~i 50 (127)
T PF13602_consen 17 PGGVDVVIDTVG-QTGESLLDASRKLL-PGGRVVSI 50 (127)
T ss_dssp TS-EEEEEESS--CCHHHCGGGCCCTE-EEEEEEEE
T ss_pred CCCceEEEECCC-CccHHHHHHHHHHC-CCCEEEEE
Confidence 468999884433 32344446777888 99988653
No 390
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=43.85 E-value=2.5e+02 Score=25.46 Aligned_cols=105 Identities=15% Similarity=0.063 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCCCEE--EEE--eccccHHHHHHHhhCCCC--------Cc--------cCCCCceeEEEEcCCccchHHH
Q 032292 9 QLMAMLLRLVNAKKT--IEI--GVFTGYSLLLTALTIPED--------GQ--------SENEGSFDYAFVDADKDNYCNY 68 (143)
Q Consensus 9 ~~l~~l~~~~~~~~v--Lei--G~g~G~~t~~la~~~~~~--------~~--------~~~~~~fD~v~~d~~~~~~~~~ 68 (143)
+.|...+...+..+. +.= |||-=.++..||+.+... +. ....+.+|++.+|+....-.+.
T Consensus 25 ~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~ 104 (824)
T PRK07764 25 EPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDD 104 (824)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHH
Confidence 445555554444443 332 455446666688777420 11 1234678999998743222222
Q ss_pred HHHHH------hcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEe
Q 032292 69 HERLM------KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 130 (143)
Q Consensus 69 ~~~~~------~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~l 130 (143)
++++. +.....-++|+|++..- ...+.+.+++.|.+-|...++++
T Consensus 105 iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------------t~~a~NaLLK~LEEpP~~~~fIl 155 (824)
T PRK07764 105 ARELRERAFFAPAESRYKIFIIDEAHMV-----------------TPQGFNALLKIVEEPPEHLKFIF 155 (824)
T ss_pred HHHHHHHHHhchhcCCceEEEEechhhc-----------------CHHHHHHHHHHHhCCCCCeEEEE
Confidence 22221 23344457888876542 12346677777776666554444
No 391
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=43.74 E-value=49 Score=24.44 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=26.9
Q ss_pred ceeEEEEcCCccc--hHHHHHHHHhcccCCeEEEEecc
Q 032292 52 SFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 52 ~fD~v~~d~~~~~--~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
.|-+++..+...- -.+..+.+.+.|..||.|++|+.
T Consensus 53 ~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 53 FYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred hCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC
Confidence 5778887764321 23567788899999999999987
No 392
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=43.25 E-value=1.5e+02 Score=22.75 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=20.0
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+|+|+-... . ...+....+.|+++|.++.
T Consensus 231 ~~d~vid~~g-~--~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 231 GADVAIECSG-N--TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred CCCEEEECCC-C--HHHHHHHHHHhhcCCEEEE
Confidence 5787763322 1 2345677899999999875
No 393
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=43.24 E-value=1.5e+02 Score=22.60 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=40.8
Q ss_pred hhcCCCEEEEEecc-ccHHHHHHHhhCCCCCc---------------------cC--------CCCceeEEEEcCCccch
Q 032292 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ---------------------SE--------NEGSFDYAFVDADKDNY 65 (143)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~~~~~---------------------~~--------~~~~fD~v~~d~~~~~~ 65 (143)
...+..+||-.|+| .|..++.+|+..+..-. .. ..+.+|+++-....
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~--- 235 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVS--- 235 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCc---
Confidence 34456789888886 67777777777542100 00 11347877743221
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 032292 66 CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~ 84 (143)
......+.+.|+++|.++.
T Consensus 236 ~~~~~~~~~~l~~~G~~i~ 254 (330)
T cd08245 236 GAAAEAALGGLRRGGRIVL 254 (330)
T ss_pred HHHHHHHHHhcccCCEEEE
Confidence 2356777899999998875
No 394
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=42.68 E-value=25 Score=26.65 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=24.1
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li 83 (143)
..+|+|++..........++++.+.+++|.+++
T Consensus 44 ~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 44 EDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp GCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEE
T ss_pred cCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEE
Confidence 457999998877777888888889888887663
No 395
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=42.21 E-value=80 Score=25.37 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=43.3
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------cCCCCceeEEEEcCCccchH--HHHHH
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------SENEGSFDYAFVDADKDNYC--NYHER 71 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------~~~~~~fD~v~~d~~~~~~~--~~~~~ 71 (143)
..++|.-+|- |..+..+|+++.+-+. .....+.|+|++.+.-.... -+-++
T Consensus 161 ~gK~vgilG~--G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~ 238 (336)
T KOG0069|consen 161 EGKTVGILGL--GRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKK 238 (336)
T ss_pred cCCEEEEecC--cHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHH
Confidence 4578888877 6888888888765222 11235689999887544332 24567
Q ss_pred HHhcccCCeEEE
Q 032292 72 LMKLLKVGGIAV 83 (143)
Q Consensus 72 ~~~~L~~gG~li 83 (143)
++.++++|++||
T Consensus 239 ~~~~mk~g~vlV 250 (336)
T KOG0069|consen 239 FIEKMKDGAVLV 250 (336)
T ss_pred HHHhcCCCeEEE
Confidence 789999999997
No 396
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=41.99 E-value=1.4e+02 Score=22.34 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=41.2
Q ss_pred hhcCCCEEEEEec--cccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEEEEcCC
Q 032292 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYAFVDAD 61 (143)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v~~d~~ 61 (143)
...+.++||-.|+ +.|..++.+|+..+..-. .. ...+|+++- +.
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~-~~ 216 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLE-LV 216 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEE-CC
Confidence 3456789998885 577788888887643100 01 245777763 32
Q ss_pred ccchHHHHHHHHhcccCCeEEEE
Q 032292 62 KDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 62 ~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.. ..++.+.+.|+++|.++.
T Consensus 217 ~~---~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 217 GT---ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred Ch---HHHHHHHHHhccCCEEEE
Confidence 21 346777899999998874
No 397
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=41.80 E-value=1.1e+02 Score=21.62 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=32.6
Q ss_pred HHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEe
Q 032292 66 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 130 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~l 130 (143)
....+.+.+.+++|.+|++++.... + . ...+++.+...+.+ .+|+.+.+
T Consensus 139 ~~i~~~~~~~~~~g~Iil~Hd~~~~----------~----~-t~~~l~~~i~~l~~-~Gy~~vtl 187 (191)
T TIGR02764 139 ESIVDRVVKNTKPGDIILLHASDSA----------K----Q-TVKALPTIIKKLKE-KGYEFVTI 187 (191)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCc----------H----h-HHHHHHHHHHHHHH-CCCEEEEH
Confidence 4566778889999999998862100 0 0 45578889888874 46665543
No 398
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=41.69 E-value=21 Score=25.60 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.2
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 032292 67 NYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 67 ~~~~~~~~~L~~gG~li~d 85 (143)
..+.++.++|+|||.+++.
T Consensus 37 ~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 37 EWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCeeEEEE
Confidence 3566778999999998764
No 399
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=41.60 E-value=1.4e+02 Score=23.48 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=18.9
Q ss_pred hhcCCCEEEEEeccc-cHHHHHHHhhCC
Q 032292 16 RLVNAKKTIEIGVFT-GYSLLLTALTIP 42 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~ 42 (143)
.....++||-.|+|. |..++.+|+..+
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G 209 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK 209 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 345678999998753 556677787765
No 400
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=41.54 E-value=1.3e+02 Score=21.43 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHhh--cCCCEEEEEeccccHHHHHHHhhCCCCC-------c---------------------cCCCCce
Q 032292 4 LTIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDG-------Q---------------------SENEGSF 53 (143)
Q Consensus 4 ~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~~~~~~-------~---------------------~~~~~~f 53 (143)
+.++.+.|...+.. ....+|+=|||=+-+.++.-........ + ....++|
T Consensus 8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l~~~~ 87 (162)
T PF10237_consen 8 SDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEELKGKF 87 (162)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhcCCCc
Confidence 34566666655544 3457999999977666654300111000 0 1235799
Q ss_pred eEEEEcCCcc--ch-HHHHHHHHhcccCCeEEEE
Q 032292 54 DYAFVDADKD--NY-CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 54 D~v~~d~~~~--~~-~~~~~~~~~~L~~gG~li~ 84 (143)
|+|++|-..- +- ......+.-++++++-+++
T Consensus 88 d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 88 DVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence 9999996542 11 1223334445566676654
No 401
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=41.48 E-value=1.4e+02 Score=24.31 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=17.8
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIP 42 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~ 42 (143)
..+++|+-||. |+.++.+|..+.
T Consensus 146 ~~~~~vvViGg--G~ig~E~A~~l~ 168 (438)
T PRK13512 146 NQVDKALVVGA--GYISLEVLENLY 168 (438)
T ss_pred cCCCEEEEECC--CHHHHHHHHHHH
Confidence 45789999986 688888887654
No 402
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.08 E-value=50 Score=25.60 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=36.2
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc--------c-----CCCCceeEEEEcCCccchHHHHHHHHhc-ccCCeEEEE
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ--------S-----ENEGSFDYAFVDADKDNYCNYHERLMKL-LKVGGIAVY 84 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~--------~-----~~~~~fD~v~~d~~~~~~~~~~~~~~~~-L~~gG~li~ 84 (143)
...+|.-||+ |..+..+|..+...+. . ..-...|+|++..........++.+... ++++. +++
T Consensus 3 ~~m~I~iiG~--G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~-ivi 79 (308)
T PRK14619 3 QPKTIAILGA--GAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPET-IIV 79 (308)
T ss_pred CCCEEEEECc--cHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCc-EEE
Confidence 3457888877 5666666666543332 0 1124679999876544444555665553 55554 444
Q ss_pred e
Q 032292 85 D 85 (143)
Q Consensus 85 d 85 (143)
+
T Consensus 80 ~ 80 (308)
T PRK14619 80 T 80 (308)
T ss_pred E
Confidence 4
No 403
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.97 E-value=75 Score=23.84 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------cCCCCceeEEEEcCCc-
Q 032292 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------SENEGSFDYAFVDADK- 62 (143)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------~~~~~~fD~v~~d~~~- 62 (143)
.+-+........++++|-+|.. .++.+.|+.+.++.+ ....+.+|+|+=-...
T Consensus 33 ~~ai~~~~~~~E~~~vli~G~Y--ltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G~~DlivDlTGlG 110 (254)
T COG4017 33 YQAIRDFLEGEEFKEVLIFGVY--LTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFRNLLKFIRGEVDLIVDLTGLG 110 (254)
T ss_pred HHHhhhhhcccCcceEEEEEee--ehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHhhhcCCCCCceeEEEeccccC
Confidence 3333333334568999999986 333444444432221 3457889998732211
Q ss_pred cchHHHHHHHHhcccCCeEEEEec
Q 032292 63 DNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 63 ~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
.--+ +.++.+.|+ ++|+.|
T Consensus 111 G~~P----e~L~~fnp~-vfiVEd 129 (254)
T COG4017 111 GIEP----EFLAKFNPK-VFIVED 129 (254)
T ss_pred CCCH----HHHhccCCc-eEEEEC
Confidence 1112 344566664 455544
No 404
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=40.87 E-value=1e+02 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.044 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCCCEEEEEe-ccccHHHHH
Q 032292 9 QLMAMLLRLVNAKKTIEIG-VFTGYSLLL 36 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG-~g~G~~t~~ 36 (143)
+.+..++....+..++=.| .|+|=+++.
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 3444444444556666555 788866554
No 405
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=40.73 E-value=1.4e+02 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=19.8
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+|+++ |+... ...++.+.+.|+++|.++.
T Consensus 243 ~~d~vi-d~~g~--~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 243 GVDAVI-DFVNN--SATASLAFDILAKGGKLVL 272 (350)
T ss_pred CCcEEE-ECCCC--HHHHHHHHHHhhcCCeEEE
Confidence 467766 33211 2356778899999998874
No 406
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=40.36 E-value=1.5e+02 Score=23.03 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=20.3
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+|+|+-.... ...++...+.|+++|.++.
T Consensus 249 ~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 249 GADVVIEASGH---PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred CCcEEEECCCC---hHHHHHHHHHhccCCEEEE
Confidence 47777643221 2356677899999999875
No 407
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=40.20 E-value=1.5e+02 Score=21.87 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=41.2
Q ss_pred HhhcCCCEEEEEec--cccHHHHHHHhhCCCCCc---------------------------------c-CCCCceeEEEE
Q 032292 15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ---------------------------------S-ENEGSFDYAFV 58 (143)
Q Consensus 15 ~~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~---------------------------------~-~~~~~fD~v~~ 58 (143)
....+.++||-.|+ +.|..++.+|+..+..-. . .....+|+++-
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~ 211 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYD 211 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEE
Confidence 34456789999984 567777777777643100 0 11235888874
Q ss_pred cCCccchHHHHHHHHhcccCCeEEEE
Q 032292 59 DADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 59 d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
... . ...+.+.+.|+++|.++.
T Consensus 212 ~~~-~---~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 212 GVG-K---DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred CCC-c---HhHHHHHHhhccCcEEEE
Confidence 322 2 245677899999998873
No 408
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=39.83 E-value=63 Score=24.12 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=33.1
Q ss_pred CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCc
Q 032292 48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 91 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g 91 (143)
...++| +|++|++..+.+.++++..++.+.|-+=++...-+.|
T Consensus 86 ~a~g~f-iviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa~ 128 (238)
T KOG2978|consen 86 HATGDF-IVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYAG 128 (238)
T ss_pred hccCCe-EEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEcC
Confidence 345666 6778999999999999999999999766655555543
No 409
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=39.60 E-value=59 Score=21.73 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=38.3
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEE
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH 129 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~ 129 (143)
...+|++++..... ....-+++.+.|+.-|+-+- +. . ...+++.||.-+.+..++-+.+
T Consensus 52 ~~~peiliiGtG~~-~~~~~~~~~~~l~~~gi~ve--vm-~-----------------T~~AcrtyN~L~~EgR~VaaaL 110 (114)
T cd05125 52 EPRPEILVIGTGRK-SRPLSPELRKYFKKLGIAVE--VV-D-----------------TRNACATFNFLAEEGRRVAAAL 110 (114)
T ss_pred cCCCCEEEEccCCC-CCcCCHHHHHHHHHcCCEEE--EE-C-----------------HHHHHHHHHHHHhCCCeEEEEE
Confidence 44678888876543 22222233455555554432 01 0 4568999998887777888888
Q ss_pred eecC
Q 032292 130 VALG 133 (143)
Q Consensus 130 lp~~ 133 (143)
+|.+
T Consensus 111 ip~~ 114 (114)
T cd05125 111 IPPG 114 (114)
T ss_pred ecCC
Confidence 8863
No 410
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=39.60 E-value=48 Score=19.53 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=14.9
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 032292 66 CNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~ 84 (143)
...++.+.+++..||.+++
T Consensus 50 ~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 50 PEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred hHHHHHHHHHHHcCCEEEE
Confidence 3567788888899998875
No 411
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=39.56 E-value=74 Score=21.83 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=30.1
Q ss_pred eEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCcc
Q 032292 54 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT 92 (143)
Q Consensus 54 D~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~ 92 (143)
+.+...+....+...++.+.+.++..|++++-|..+.|.
T Consensus 31 ~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D~~Ge 69 (127)
T COG1658 31 GVIITNGSAINSLETIELIKKAQKYKGVIILTDPDRKGE 69 (127)
T ss_pred ceEEEcCCccchHHHHHHHHHhhccCCEEEEeCCCcchH
Confidence 445555555567888899999999999999988887763
No 412
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=39.18 E-value=2.5e+02 Score=24.15 Aligned_cols=80 Identities=15% Similarity=0.027 Sum_probs=45.7
Q ss_pred cChHHHHHHHHHHhh--cCCCEEEEEe-ccccHHHHH--HHhhCCCCCccCCCCceeEEEEcCCcc--------------
Q 032292 3 LLTIHGQLMAMLLRL--VNAKKTIEIG-VFTGYSLLL--TALTIPEDGQSENEGSFDYAFVDADKD-------------- 63 (143)
Q Consensus 3 ~~~~~~~~l~~l~~~--~~~~~vLeiG-~g~G~~t~~--la~~~~~~~~~~~~~~fD~v~~d~~~~-------------- 63 (143)
+.|+..+.|..+-.- .++..|+=+| +|+|=||+. +++.+.. .....++++|++..
T Consensus 373 ~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~------~~g~~~~~lD~D~vr~~l~ge~~f~~~e 446 (568)
T PRK05537 373 SFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME------MRGRPVTLLDGDVVRKHLSSELGFSKED 446 (568)
T ss_pred cHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh------ccCceEEEeCCcHHHHhccCCCCCCHHH
Confidence 346667766666532 3566888889 899988775 5554432 12234555554321
Q ss_pred ---chHHHHHHHHhcccCCeEEEEeccC
Q 032292 64 ---NYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 64 ---~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
.+..........++.||.+|++.+.
T Consensus 447 r~~~~~~l~~~a~~v~~~Gg~vI~~~~~ 474 (568)
T PRK05537 447 RDLNILRIGFVASEITKNGGIAICAPIA 474 (568)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 0111112334578889999888553
No 413
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=39.01 E-value=40 Score=25.23 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.1
Q ss_pred CCEEEEEeccccHHHHHHHhh
Q 032292 20 AKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~ 40 (143)
-..+.|+|+|+|..+...|++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~ 53 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA 53 (252)
T ss_pred hhceeeccCCcchHHHHHHhh
Confidence 378899999999999887766
No 414
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=38.95 E-value=1.7e+02 Score=22.93 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=17.9
Q ss_pred hhcCCCEEEEEecc-ccHHHHHHHhhCC
Q 032292 16 RLVNAKKTIEIGVF-TGYSLLLTALTIP 42 (143)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~ 42 (143)
...+.++||-+|+| .|..++.+|++.+
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G 208 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG 208 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 34567899988874 2455666777765
No 415
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=38.86 E-value=40 Score=27.15 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=17.6
Q ss_pred CCCEEEEEecc-ccHHHHHHHhhCC
Q 032292 19 NAKKTIEIGVF-TGYSLLLTALTIP 42 (143)
Q Consensus 19 ~~~~vLeiG~g-~G~~t~~la~~~~ 42 (143)
++.+|+-+|+| .|..++..++.++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG 190 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG 190 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC
Confidence 56789999997 5666666666654
No 416
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=38.70 E-value=1.9e+02 Score=22.70 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=18.2
Q ss_pred hhcCCCEEEEEecc-ccHHHHHHHhhCC
Q 032292 16 RLVNAKKTIEIGVF-TGYSLLLTALTIP 42 (143)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~ 42 (143)
...+.++||-+|+| .|..++.+|+..+
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G 210 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG 210 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 34567899988874 3456666777664
No 417
>PLN02712 arogenate dehydrogenase
Probab=38.65 E-value=63 Score=28.32 Aligned_cols=33 Identities=18% Similarity=0.005 Sum_probs=21.2
Q ss_pred ceeEEEEcCCccchHHHHHHHH-hcccCCeEEEEe
Q 032292 52 SFDYAFVDADKDNYCNYHERLM-KLLKVGGIAVYD 85 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~-~~L~~gG~li~d 85 (143)
..|+|++..........++.+. +.+++|. +++|
T Consensus 108 ~aDvViLavP~~~~~~vl~~l~~~~l~~g~-iVvD 141 (667)
T PLN02712 108 HPDVILLCTSIISTENVLKSLPLQRLKRNT-LFVD 141 (667)
T ss_pred CCCEEEEcCCHHHHHHHHHhhhhhcCCCCe-EEEE
Confidence 4799998776555555666654 5677766 4444
No 418
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=38.51 E-value=21 Score=24.10 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCcc---chHHHHHHHHhcccCCeEEEEec
Q 032292 50 EGSFDYAFVDADKD---NYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 50 ~~~fD~v~~d~~~~---~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
-..||+||+.-+.+ +|. +...+++++.+.|++|+++
T Consensus 76 L~~~DvvlmRkDPPfD~~yi-~aT~lLe~a~~~gv~VvN~ 114 (119)
T PF02951_consen 76 LDDFDVVLMRKDPPFDMEYI-YATYLLELAERQGVLVVND 114 (119)
T ss_dssp GGGSSEEEEE--S---HHHH-HHHHHHHHHHHTT-EEES-
T ss_pred cccCCEEEEecCCCCChHHH-HHHHHHHHhhhCCcEEEeC
Confidence 35699999987654 343 3345567777789988865
No 419
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=38.21 E-value=55 Score=24.95 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.3
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+.+|+||+..........++.+.+.+.++.++++
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 6789999877655667788888888888877653
No 420
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=37.33 E-value=1.7e+02 Score=21.60 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=32.2
Q ss_pred HHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEe
Q 032292 66 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 130 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~l 130 (143)
....+.+.+.+++|.+|++++.... ...++..+...++ ..+|+.+.+
T Consensus 174 ~~~~~~v~~~~~~g~IiLlHd~~~~-----------------t~~aL~~ii~~lk-~~Gy~fvtl 220 (224)
T TIGR02884 174 QYAYKQIMKKIHPGAILLLHAVSKD-----------------NAEALDKIIKDLK-EQGYTFKSL 220 (224)
T ss_pred HHHHHHHHhcCCCCcEEEEECCCCC-----------------HHHHHHHHHHHHH-HCCCEEEEh
Confidence 3456778888999999999874210 3457888988886 445665543
No 421
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=37.10 E-value=14 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=18.9
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhc--ccCCeEEEEe
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKL--LKVGGIAVYD 85 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~--L~~gG~li~d 85 (143)
....|++|+...-.......+.+... ++|| -++++
T Consensus 66 ~~~aDlv~iavpDdaI~~va~~La~~~~~~~g-~iVvH 102 (127)
T PF10727_consen 66 LRDADLVFIAVPDDAIAEVAEQLAQYGAWRPG-QIVVH 102 (127)
T ss_dssp GCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT--EEEE
T ss_pred cccCCEEEEEechHHHHHHHHHHHHhccCCCC-cEEEE
Confidence 46799999976544445555666554 5665 45554
No 422
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=36.95 E-value=1.7e+02 Score=21.97 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=20.1
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
..+|.++-.... ..++.+.+.++++|.++.
T Consensus 234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~ 263 (342)
T cd08266 234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVT 263 (342)
T ss_pred CCCcEEEECCcH----HHHHHHHHHhhcCCEEEE
Confidence 357877744332 345677788999998874
No 423
>PRK06545 prephenate dehydrogenase; Validated
Probab=36.34 E-value=83 Score=25.06 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=22.9
Q ss_pred CceeEEEEcCCccchHHHHHHHHh-cccCCeEEEEe
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAVYD 85 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~-~L~~gG~li~d 85 (143)
...|+|++.........+++.+.+ .++++ .++.|
T Consensus 59 ~~aDlVilavP~~~~~~vl~~l~~~~l~~~-~ivtD 93 (359)
T PRK06545 59 AEADLIVLAVPVDATAALLAELADLELKPG-VIVTD 93 (359)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhcCCCCC-cEEEe
Confidence 467999988765555667777776 47776 44443
No 424
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=36.17 E-value=68 Score=27.07 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=49.4
Q ss_pred CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------------cCCCCceeEE
Q 032292 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------------SENEGSFDYA 56 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------------~~~~~~fD~v 56 (143)
.+..+|-+|-|.|.....+-..+++... ...+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 3567788888889888887766664211 1245689999
Q ss_pred EEcCCccc----------h--HHHHHHHHhcccCCeEEEEeccCCC
Q 032292 57 FVDADKDN----------Y--CNYHERLMKLLKVGGIAVYDNTLWG 90 (143)
Q Consensus 57 ~~d~~~~~----------~--~~~~~~~~~~L~~gG~li~d~~~~~ 90 (143)
++|-+..+ + ..++..+...|.|.|+++++-+.+.
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 99865322 1 1255566789999999998766554
No 425
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=36.07 E-value=43 Score=23.00 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=21.4
Q ss_pred HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCccCCCCceeEEEEcCCc
Q 032292 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADK 62 (143)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~~~~~~~fD~v~~d~~~ 62 (143)
|...+++..+..+|+|+|-|.=...+. .+.+ ..||++..|-..
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~---~L~~-------~G~dV~~tDi~~ 46 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAK---KLKE-------RGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHH---HHHH-------HS-EEEEE-SS-
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHH---HHHH-------cCCcEEEEECcc
Confidence 444555566778999999975433222 2221 127888888654
No 426
>PRK08441 oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
Probab=35.91 E-value=59 Score=23.32 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=20.8
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
+..|+++.- + ...+....+.|++||++++|.
T Consensus 67 ~~~D~lval----~-~~~~~~~~~~l~~gg~ii~n~ 97 (183)
T PRK08441 67 GEIDFMLST----A-QISYNQFKSGVKEGGIIVVEP 97 (183)
T ss_pred CCCCEEEEC----C-HHHHHHHHhhcCCCeEEEEcC
Confidence 457777731 1 223456678899999999984
No 427
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.60 E-value=37 Score=23.14 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCccCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
+...++.....++|+|+|.| ..+- .|+.+.+ ..||++..|.... .-+.|=.++.||+.
T Consensus 4 ~a~~iAre~~~gkVvEVGiG--~~~~-VA~~L~e-------~g~dv~atDI~~~-----------~a~~g~~~v~DDit 61 (129)
T COG1255 4 VAEYIARENARGKVVEVGIG--FFLD-VAKRLAE-------RGFDVLATDINEK-----------TAPEGLRFVVDDIT 61 (129)
T ss_pred HHHHHHHHhcCCcEEEEccc--hHHH-HHHHHHH-------cCCcEEEEecccc-----------cCcccceEEEccCC
Confidence 34455666778899999986 3332 3444432 2399999887533 22334456777765
No 428
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=35.52 E-value=45 Score=29.75 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
.+...||++++|....--++++..+...++-||++++-
T Consensus 88 iLG~t~~~~VlD~~~~l~pn~lar~v~TvrgGG~lvil 125 (758)
T COG1444 88 ILGRTFDLLVLDLTEGLDPNALARLVGTVRGGGLLVLL 125 (758)
T ss_pred HhchhhheEEEecccCCCHHHHHHHHhheecceEEEEE
Confidence 34678999999987666688899999999999999863
No 429
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=35.37 E-value=43 Score=21.63 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=23.8
Q ss_pred CceeEEEEcCCccchHH-HHHHHHhcccCCeEEEEe
Q 032292 51 GSFDYAFVDADKDNYCN-YHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~-~~~~~~~~L~~gG~li~d 85 (143)
..+|.|++...+..|.. .++.+.+.++ ++-+|+|
T Consensus 65 ~~~D~vvl~t~h~~f~~l~~~~~~~~~~-~~~~iiD 99 (106)
T PF03720_consen 65 KGADAVVLATDHDEFRELDWEEIAKLMR-KPPVIID 99 (106)
T ss_dssp TTESEEEESS--GGGGCCGHHHHHHHSC-SSEEEEE
T ss_pred cCCCEEEEEecCHHHhccCHHHHHHhcC-CCCEEEE
Confidence 57999999988888875 5777777774 5555565
No 430
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=35.21 E-value=77 Score=22.50 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=20.0
Q ss_pred CceeEEEEcCCccchHHHHHH--HHhcccCCeEEEEec
Q 032292 51 GSFDYAFVDADKDNYCNYHER--LMKLLKVGGIAVYDN 86 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~--~~~~L~~gG~li~d~ 86 (143)
...|++++-. ...++. ..+.|+|||++++|.
T Consensus 65 ~~~D~lva~~-----~~~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 65 YEPDYVVVLD-----PTLLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred CCCCEEEEcC-----HHHhCccchhhCcCCCeEEEEEC
Confidence 4567766532 222322 567899999999985
No 431
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=35.12 E-value=35 Score=26.87 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=8.0
Q ss_pred CEEEEEeccccH
Q 032292 21 KKTIEIGVFTGY 32 (143)
Q Consensus 21 ~~vLeiG~g~G~ 32 (143)
-++||||||.-.
T Consensus 104 v~glDIGTGAsc 115 (299)
T PF05971_consen 104 VRGLDIGTGASC 115 (299)
T ss_dssp -EEEEES-TTTT
T ss_pred eEeecCCccHHH
Confidence 478999997653
No 432
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=34.61 E-value=1.4e+02 Score=21.87 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=32.4
Q ss_pred ch-HHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 032292 64 NY-CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 120 (143)
Q Consensus 64 ~~-~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~ 120 (143)
.| ...++.+...|+|..+++.-|.+-.+.+.++ + .....++|++.+.
T Consensus 30 ~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~-----e-----f~~~~~RF~~if~ 77 (193)
T cd08164 30 YFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDE-----E-----FAKRADRYRRRFF 77 (193)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccCCCcccHH-----H-----HHHHHHHHHHHhc
Confidence 34 4578888999999999999887744322111 1 3456888888774
No 433
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=34.41 E-value=1.9e+02 Score=22.60 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=37.4
Q ss_pred cCCCEEEEEecc-ccHHHHHHHhhCCCCCc-------------c--------C---------CCCceeEEEEcCCccchH
Q 032292 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-------------S--------E---------NEGSFDYAFVDADKDNYC 66 (143)
Q Consensus 18 ~~~~~vLeiG~g-~G~~t~~la~~~~~~~~-------------~--------~---------~~~~fD~v~~d~~~~~~~ 66 (143)
.+.++||-.|+| .|..++.+|+..+..-. . . ....+|+||-... ..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g---~~ 255 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVP---VF 255 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCC---ch
Confidence 356788877764 35666677777642100 0 0 0123566553221 12
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 032292 67 NYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 67 ~~~~~~~~~L~~gG~li~d 85 (143)
..++.+.+.|+++|.++.-
T Consensus 256 ~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 256 HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred HHHHHHHHHhccCCEEEEE
Confidence 3567788999999988753
No 434
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=34.41 E-value=38 Score=25.73 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=19.9
Q ss_pred HHHHHHHhhcCC--CEEEEEeccccHHHHHHHhh
Q 032292 9 QLMAMLLRLVNA--KKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 9 ~~l~~l~~~~~~--~~vLeiG~g~G~~t~~la~~ 40 (143)
+.|...+.+.+. .+|||.-+|-|.-++.+|..
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~ 96 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL 96 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc
Confidence 334444444443 38999999999999988854
No 435
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=34.24 E-value=1e+02 Score=25.53 Aligned_cols=68 Identities=22% Similarity=0.150 Sum_probs=38.8
Q ss_pred hhcCCCEEEEEeccc--cHHHHHHHhhCCC---CCc--------------------cCCCCceeEEEEcCCccchHHHHH
Q 032292 16 RLVNAKKTIEIGVFT--GYSLLLTALTIPE---DGQ--------------------SENEGSFDYAFVDADKDNYCNYHE 70 (143)
Q Consensus 16 ~~~~~~~vLeiG~g~--G~~t~~la~~~~~---~~~--------------------~~~~~~fD~v~~d~~~~~~~~~~~ 70 (143)
.+.+|++|.-||... |..+-.+.+.+.. .+. ...+++.|++++..........++
T Consensus 3 ~l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~ 82 (447)
T TIGR02717 3 HLFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVE 82 (447)
T ss_pred cccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHHHHHHHH
Confidence 456899999999854 3222222222211 111 123467899998766555666677
Q ss_pred HHHhcccCCeEEEE
Q 032292 71 RLMKLLKVGGIAVY 84 (143)
Q Consensus 71 ~~~~~L~~gG~li~ 84 (143)
++.+ ...++++++
T Consensus 83 e~~~-~gv~~~vi~ 95 (447)
T TIGR02717 83 ECGE-KGVKGAVVI 95 (447)
T ss_pred HHHh-cCCCEEEEE
Confidence 6655 344566654
No 436
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=33.90 E-value=98 Score=22.19 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCceeEEEEcCCccchHHHHH--HHHhcccCCeEEEEecc
Q 032292 50 EGSFDYAFVDADKDNYCNYHE--RLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~--~~~~~L~~gG~li~d~~ 87 (143)
.+..|++++-. ...++ ...+.|++||++++|..
T Consensus 64 ~~~~Dilva~~-----~~~~~~~~~~~~l~~~g~vi~n~~ 98 (185)
T PRK14029 64 IYEPDVVVVLD-----PSLLDTVDVTAGLKDGGIVIVNTE 98 (185)
T ss_pred cCCCCEEEEcC-----HHHhhhchHhhCcCCCcEEEEECC
Confidence 45677776532 12233 24688999999999853
No 437
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=33.73 E-value=2.2e+02 Score=21.98 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=20.5
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+|+|+-.... ...++.+.+.|+++|.++.
T Consensus 241 ~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 241 GVDVSFDCAGV---QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred CCCEEEECCCC---HHHHHHHHHhccCCCEEEE
Confidence 37777643321 2356778899999998875
No 438
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=33.68 E-value=85 Score=22.17 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=20.2
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~ 87 (143)
..|++++-. ...+....+.|++||++++|..
T Consensus 67 ~~D~lval~-----~~~~~~~~~~l~~~g~vi~n~~ 97 (177)
T PRK08537 67 SPDILVAMS-----QEAYDKYLDDLKEGGTVIVDPD 97 (177)
T ss_pred CCCEEEEeC-----HHHHHHHHhccCCCeEEEEECC
Confidence 456665422 2234456788999999999853
No 439
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=33.46 E-value=1.1e+02 Score=25.25 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=20.9
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEe
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYD 85 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~g-G~li~d 85 (143)
-..+|+||+.....+|.-.-+.+.+.+++. ..+++|
T Consensus 236 l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livD 272 (414)
T COG0373 236 LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVD 272 (414)
T ss_pred hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEE
Confidence 368999999866555543333344443332 267777
No 440
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=33.05 E-value=2.3e+02 Score=21.96 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=18.9
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li 83 (143)
..+|+||..... ....+..++.+++|++++
T Consensus 209 ~~aDiVI~t~p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 209 GKIDIIFNTIPA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred CCCCEEEECCCh---hhhhHHHHHcCCCCcEEE
Confidence 468999875421 223355668889977654
No 441
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=32.94 E-value=16 Score=28.91 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=14.8
Q ss_pred HHHHHHHhcccCCeEEEE
Q 032292 67 NYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 67 ~~~~~~~~~L~~gG~li~ 84 (143)
..++.+.++|+|||.+++
T Consensus 221 ~~L~~~~~~L~~gGrl~V 238 (305)
T TIGR00006 221 EALQFAPNLLAPGGRLSI 238 (305)
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 356677799999999987
No 442
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=32.27 E-value=2e+02 Score=21.89 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=37.5
Q ss_pred CCEEEEEec--cccHHHHHHHhhC-CCCCc---------------------c-----------CCCCceeEEEEcCCccc
Q 032292 20 AKKTIEIGV--FTGYSLLLTALTI-PEDGQ---------------------S-----------ENEGSFDYAFVDADKDN 64 (143)
Q Consensus 20 ~~~vLeiG~--g~G~~t~~la~~~-~~~~~---------------------~-----------~~~~~fD~v~~d~~~~~ 64 (143)
..+||-.|+ +.|..++.+|+.. +..-. . ...+.+|+|+ +....
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl-~~~~~- 226 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVF-SLTHT- 226 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEE-EcCCc-
Confidence 678888874 6777778888875 32100 0 0112467666 32111
Q ss_pred hHHHHHHHHhcccCCeEEEE
Q 032292 65 YCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 65 ~~~~~~~~~~~L~~gG~li~ 84 (143)
...+..+.+.|+++|.++.
T Consensus 227 -~~~~~~~~~~l~~~G~~v~ 245 (336)
T TIGR02817 227 -DQHFKEIVELLAPQGRFAL 245 (336)
T ss_pred -HHHHHHHHHHhccCCEEEE
Confidence 2346677899999998874
No 443
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.25 E-value=2.6e+02 Score=23.25 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCCceeEEEEcCCccchHHHHHHHH-hcccC-CeEEEE
Q 032292 49 NEGSFDYAFVDADKDNYCNYHERLM-KLLKV-GGIAVY 84 (143)
Q Consensus 49 ~~~~fD~v~~d~~~~~~~~~~~~~~-~~L~~-gG~li~ 84 (143)
..+.+|-+++....+.|...++.+- ..|+. .-++.+
T Consensus 80 i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLv 117 (429)
T PF10100_consen 80 IEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLV 117 (429)
T ss_pred hcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEE
Confidence 4578888887776677888777663 33333 334444
No 444
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=31.76 E-value=2.4e+02 Score=21.67 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=20.8
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+.+|+|+-.... ...++.+.+.|+++|.++.
T Consensus 229 ~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 229 EGVDVFLEMSGA---PKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred CCCCEEEECCCC---HHHHHHHHHhhcCCCEEEE
Confidence 457887753221 2346778899999998875
No 445
>PRK10444 UMP phosphatase; Provisional
Probab=31.66 E-value=2.3e+02 Score=21.37 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=25.7
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
.-|.|++..+.......+..+.+++++|-.+++-|...
T Consensus 108 ~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n~D~ 145 (248)
T PRK10444 108 NPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDT 145 (248)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 45788877655444445667778888888888866544
No 446
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=31.16 E-value=2.3e+02 Score=21.38 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=21.0
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+.+|.++-.... ...++.+.+.|+++|.++.
T Consensus 213 ~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 213 GGFDVVVEATGS---PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CCCCEEEECCCC---hHHHHHHHHHhhcCCEEEE
Confidence 458887743322 2346677889999998886
No 447
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=31.16 E-value=85 Score=23.80 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=25.7
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
+++|+|++.....+....++.+.+.+.++..++.
T Consensus 65 ~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 65 GPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CCCCEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 6789999876555567778888888888776653
No 448
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=31.13 E-value=93 Score=19.75 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=21.7
Q ss_pred CCcChHHHHHHHHHHhhc-------CCCEEEEEeccc
Q 032292 1 MLLLTIHGQLMAMLLRLV-------NAKKTIEIGVFT 30 (143)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~-------~~~~vLeiG~g~ 30 (143)
|+|+..+-+.|..||+.- ...+|.++-|.|
T Consensus 1 MnISk~EQR~LHvLAqGG~I~~~rd~~gri~~v~C~T 37 (85)
T PF09857_consen 1 MNISKQEQRVLHVLAQGGRIRHERDDSGRITAVECYT 37 (85)
T ss_pred CCccHHHHHHHHHHhcCCeEEEEECCCCCEEEEEEEc
Confidence 788888889999998642 345666666654
No 449
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=31.04 E-value=1.4e+02 Score=21.04 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
.+..|++++-.. ..+....+.|+|||++++|.
T Consensus 62 ~~~~D~lval~~-----~~~~~~~~~l~~~g~vi~n~ 93 (170)
T PRK08338 62 VTKADVLVALHQ-----LGYETAKSSLKEDGLLIIDT 93 (170)
T ss_pred CCCCCEEEEcCH-----HHHHHHhcccCCCeEEEEeC
Confidence 345677765321 23455678899999999985
No 450
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=30.63 E-value=2.1e+02 Score=20.68 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCCCEEEEEecccc-HHHHHHHhhCC
Q 032292 9 QLMAMLLRLVNAKKTIEIGVFTG-YSLLLTALTIP 42 (143)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G-~~t~~la~~~~ 42 (143)
..+..++....+..++=||+.-| +.+.++|+..+
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~ 81 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYG 81 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhC
Confidence 45555555556666899999876 78888887754
No 451
>PRK13687 hypothetical protein; Provisional
Probab=30.45 E-value=97 Score=19.65 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=22.2
Q ss_pred CCcChHHHHHHHHHHhhc-------CCCEEEEEeccc
Q 032292 1 MLLLTIHGQLMAMLLRLV-------NAKKTIEIGVFT 30 (143)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~-------~~~~vLeiG~g~ 30 (143)
|+|+..+-+.|..||+.- ...+|.++-|.|
T Consensus 1 MnISk~EQRvLHvLAqGGrI~~~rd~~gri~~v~C~T 37 (85)
T PRK13687 1 MNISRQEQRTLHVLAQGGRIEHERDDSGRITAVECYT 37 (85)
T ss_pred CCccHHHHHHHHHHhcCCeEEEEECCCCcEEEEEEEc
Confidence 788888889999998642 345677777754
No 452
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=30.41 E-value=56 Score=23.80 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=17.8
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
..|.+|++.....--.+..+.+.+..+.||.|++.
T Consensus 56 ~~Ykllv~P~~~~l~~~~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 56 SGYKLLVLPSLYILSPEFAERLRAYVENGGTLILT 90 (207)
T ss_dssp TT-SEEEES--SC--HHH---HHHHHT-SS-EEE-
T ss_pred ccCcEEEEeeEEEEChHHHHHHHHHHHCCCEEEEE
Confidence 34777776654333355677888999999999974
No 453
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=30.23 E-value=1.1e+02 Score=24.04 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=22.7
Q ss_pred CceeEEEEcCCcc-chHHHHHHHHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~~-~~~~~~~~~~~~L~~gG~li~ 84 (143)
..-|+|++..... ....+.+.+.+.+++|-+|.+
T Consensus 58 ~~ADiVvLaVpp~~~~~~v~~ei~~~l~~g~iVs~ 92 (314)
T TIGR00465 58 PQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGF 92 (314)
T ss_pred hcCCEEEEeCCcHhHHHHHHHHHHhhCCCCcEEEE
Confidence 4568888876544 444556677888888865543
No 454
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=30.23 E-value=69 Score=19.72 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=36.3
Q ss_pred CCEEEEEeccccHHHHHHHhhCCCCCcc----CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPEDGQS----ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~~~~~----~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li 83 (143)
+.+|+-+-.-+......+++..+..... ..-+.-|+||+......+.+.++.+ +.+.++.+++
T Consensus 25 ~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 25 PHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred ceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 4555544344445555555555421111 1123579999988777778888887 7777777775
No 455
>PRK08114 cystathionine beta-lyase; Provisional
Probab=30.17 E-value=3.1e+02 Score=22.42 Aligned_cols=33 Identities=9% Similarity=-0.150 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHH
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLT 37 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~l 37 (143)
|....+=..++.+..+...+-..+|++..+..+
T Consensus 62 Pt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~ 94 (395)
T PRK08114 62 LTHFSLQEAMCELEGGAGCALYPCGAAAVANAI 94 (395)
T ss_pred hhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHH
Confidence 444555556666666666666666655554433
No 456
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=30.00 E-value=2.4e+02 Score=22.99 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh---CCCCCc-------------cCCCCceeEEEEcCCccchHH
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT---IPEDGQ-------------SENEGSFDYAFVDADKDNYCN 67 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~---~~~~~~-------------~~~~~~fD~v~~d~~~~~~~~ 67 (143)
++..-+|=..++...+++.++-+.+ |.+++.+|.. +++... ........-||+|.+...+--
T Consensus 33 G~~v~~FE~~~ae~~G~k~ava~~s--gT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~ni 110 (374)
T COG0399 33 GPFVRRFEQAFAEYLGVKYAVAVSS--GTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNI 110 (374)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEecC--hHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCC
Confidence 6777888888998888888766554 6666666654 444222 112334567888887655544
Q ss_pred HHHHHHhcccC--CeEEEE
Q 032292 68 YHERLMKLLKV--GGIAVY 84 (143)
Q Consensus 68 ~~~~~~~~L~~--gG~li~ 84 (143)
..+.+...+.+ .+++.+
T Consensus 111 d~~~ie~aIt~~tKAIipV 129 (374)
T COG0399 111 DPDLIEAAITPRTKAIIPV 129 (374)
T ss_pred CHHHHHHHcccCCeEEEEe
Confidence 44455555555 455554
No 457
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=29.57 E-value=1.2e+02 Score=21.78 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=21.0
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 88 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~ 88 (143)
+..|++++-- .. .+....+.|++||+++++...
T Consensus 63 ~~~Dilvald----~~-~~~~~~~~l~~~g~ii~n~~~ 95 (189)
T TIGR03334 63 GGADLLLAFE----PL-EALRYLPYLSEGGEVILNTSP 95 (189)
T ss_pred CCCCEEEEeC----HH-HHHHHHHhcCCCcEEEEeCCC
Confidence 4566666432 12 234556889999999998543
No 458
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=29.52 E-value=2.4e+02 Score=21.10 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=38.8
Q ss_pred hcCCCEEEEEec--cccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcC
Q 032292 17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 17 ~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~ 60 (143)
..+..+||-.|+ +.|..++.+|++....-. ......+|+|+ ++
T Consensus 136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl-~~ 214 (323)
T cd05282 136 LPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLAL-DA 214 (323)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEE-EC
Confidence 345678888876 467777778877643100 01124588777 33
Q ss_pred CccchHHHHHHHHhcccCCeEEEE
Q 032292 61 DKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 ~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.... ......+.|+++|.++.
T Consensus 215 ~g~~---~~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 215 VGGE---SATRLARSLRPGGTLVN 235 (323)
T ss_pred CCCH---HHHHHHHhhCCCCEEEE
Confidence 2221 23456789999998873
No 459
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.44 E-value=3.5e+02 Score=22.90 Aligned_cols=105 Identities=14% Similarity=0.026 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCCCE-EEEEe-cccc--HHHHHHHhhCCCC-Cc------------c-CCCCceeEEEEcCCccchHHHHH
Q 032292 9 QLMAMLLRLVNAKK-TIEIG-VFTG--YSLLLTALTIPED-GQ------------S-ENEGSFDYAFVDADKDNYCNYHE 70 (143)
Q Consensus 9 ~~l~~l~~~~~~~~-vLeiG-~g~G--~~t~~la~~~~~~-~~------------~-~~~~~fD~v~~d~~~~~~~~~~~ 70 (143)
+.|...+...+..+ +|=-| .|+| ..+..+|+.+... +. . ......|++.+|+......+.++
T Consensus 26 ~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR 105 (509)
T PRK14958 26 RALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTR 105 (509)
T ss_pred HHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHH
Confidence 34444444434333 34333 4555 4555677776421 11 1 12344699999975433333344
Q ss_pred HHHhc------ccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEe
Q 032292 71 RLMKL------LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 130 (143)
Q Consensus 71 ~~~~~------L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~l 130 (143)
++... -.+.-++++|++..- ...+...+++.+.+-|.....++
T Consensus 106 ~l~~~~~~~p~~~~~kV~iIDE~~~l-----------------s~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 106 ELLDNIPYAPTKGRFKVYLIDEVHML-----------------SGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred HHHHHHhhccccCCcEEEEEEChHhc-----------------CHHHHHHHHHHHhccCCCeEEEE
Confidence 33321 122348888887643 11245666666766555444433
No 460
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=29.21 E-value=1.2e+02 Score=18.66 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEec
Q 032292 50 EGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDN 86 (143)
Q Consensus 50 ~~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d~ 86 (143)
...+++|++|... .-+....+...+.|+.|.+..+.+
T Consensus 18 ~~~~~miL~De~G~~I~a~i~~~~~~~f~~~L~eg~vy~is~ 59 (86)
T cd04480 18 GESLEMVLVDEKGNRIHATIPKRLAAKFRPLLKEGKWYTISN 59 (86)
T ss_pred CcEEEEEEEcCCCCEEEEEECHHHHHhhhhhceeCCEEEEee
Confidence 4578999999753 234566778889999999998765
No 461
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=29.14 E-value=93 Score=24.07 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHhh--cCCCEEEEEeccccHHHHHHHhh
Q 032292 4 LTIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 4 ~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~ 40 (143)
.|.+-+++..+... .+..-++|.+||+|=+...|..+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~a 48 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHH
Confidence 45667777776654 24567899999999766655443
No 462
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=29.14 E-value=93 Score=24.07 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHhh--cCCCEEEEEeccccHHHHHHHhh
Q 032292 4 LTIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 4 ~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~ 40 (143)
.|.+-+++..+... .+..-++|.+||+|=+...|..+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~a 48 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHH
Confidence 45667777776654 24567899999999766655443
No 463
>PLN02702 L-idonate 5-dehydrogenase
Probab=29.09 E-value=2.8e+02 Score=21.61 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=19.9
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.+|+|+-.... ...+..+.++|+++|.++.
T Consensus 254 ~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 254 GIDVSFDCVGF---NKTMSTALEATRAGGKVCL 283 (364)
T ss_pred CCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 46766533221 2357788899999998874
No 464
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=28.43 E-value=1.3e+02 Score=23.84 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=21.0
Q ss_pred CceeEEEEcCCccc--hHHHHHHHHhcccCCeEEE
Q 032292 51 GSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 51 ~~fD~v~~d~~~~~--~~~~~~~~~~~L~~gG~li 83 (143)
...|+|++...... .....+..++.+++|.++|
T Consensus 197 ~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlI 231 (330)
T PRK12480 197 KDADIISLHVPANKESYHLFDKAMFDHVKKGAILV 231 (330)
T ss_pred hcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEE
Confidence 45688877654321 2234456778899988776
No 465
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=28.05 E-value=76 Score=22.04 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=21.1
Q ss_pred CceeEEEEcCCc-cchHHHHHH--HHhcccCCeEEEE
Q 032292 51 GSFDYAFVDADK-DNYCNYHER--LMKLLKVGGIAVY 84 (143)
Q Consensus 51 ~~fD~v~~d~~~-~~~~~~~~~--~~~~L~~gG~li~ 84 (143)
...|+|++.-.. ......+.. +.+.|++|.+++-
T Consensus 56 ~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid 92 (163)
T PF03446_consen 56 EQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIID 92 (163)
T ss_dssp HHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE
T ss_pred hcccceEeecccchhhhhhhhhhHHhhccccceEEEe
Confidence 345888876543 334556666 7888888887763
No 466
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=27.83 E-value=2.8e+02 Score=21.19 Aligned_cols=66 Identities=18% Similarity=0.063 Sum_probs=41.5
Q ss_pred hhcCCCEEEEEecc--ccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEc
Q 032292 16 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVD 59 (143)
Q Consensus 16 ~~~~~~~vLeiG~g--~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d 59 (143)
...+..+||-.|++ .|..++.+|++.+..-. ....+.+|+++-+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~ 241 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVT 241 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEc
Confidence 34567889888875 67777778887653100 0012457877743
Q ss_pred CCccchHHHHHHHHhcccCCeEEEE
Q 032292 60 ADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 60 ~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
... ...+..+.+.++++|.++.
T Consensus 242 ~~~---~~~~~~~~~~l~~~g~~v~ 263 (341)
T cd08297 242 AVS---AAAYEQALDYLRPGGTLVC 263 (341)
T ss_pred CCc---hHHHHHHHHHhhcCCEEEE
Confidence 322 2345677889999999874
No 467
>PRK06234 methionine gamma-lyase; Provisional
Probab=27.63 E-value=3e+02 Score=22.16 Aligned_cols=33 Identities=9% Similarity=-0.077 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHH
Q 032292 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLT 37 (143)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~l 37 (143)
|..-+|-..++...+...++-.++|++.....+
T Consensus 64 p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al 96 (400)
T PRK06234 64 PTSTEVENKLALLEGGEAAVVAASGMGAISSSL 96 (400)
T ss_pred ccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH
Confidence 444556666666655556666666555443333
No 468
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=27.27 E-value=1.2e+02 Score=23.95 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=24.1
Q ss_pred CCEEEEEeccccHHHHHHHhhCCCCCc-------cCCCCceeEEEEc
Q 032292 20 AKKTIEIGVFTGYSLLLTALTIPEDGQ-------SENEGSFDYAFVD 59 (143)
Q Consensus 20 ~~~vLeiG~g~G~~t~~la~~~~~~~~-------~~~~~~fD~v~~d 59 (143)
|.-|+-.|-.+...++++.+..+...+ ......||+|++-
T Consensus 58 pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~~~~FDlvi~p 104 (311)
T PF06258_consen 58 PDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLPPRPFDLVIVP 104 (311)
T ss_pred CcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCCccccCEEEEC
Confidence 445555555555667777766643112 2346889999983
No 469
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=27.07 E-value=2.8e+02 Score=20.97 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=39.2
Q ss_pred hhcCCCEEEEEec--cccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcC
Q 032292 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~ 60 (143)
...+..+||-.|. +.|..++.+|++.+.... ....+.+|+|+-..
T Consensus 136 ~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~ 215 (329)
T cd08250 136 EMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESV 215 (329)
T ss_pred CCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECC
Confidence 4456788988884 566777777777542100 00113467666322
Q ss_pred CccchHHHHHHHHhcccCCeEEEE
Q 032292 61 DKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 ~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
. ...+..+.+.|+++|.++.
T Consensus 216 g----~~~~~~~~~~l~~~g~~v~ 235 (329)
T cd08250 216 G----GEMFDTCVDNLALKGRLIV 235 (329)
T ss_pred c----HHHHHHHHHHhccCCeEEE
Confidence 1 1356677899999998863
No 470
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.88 E-value=14 Score=24.34 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=37.2
Q ss_pred eccccHHHHHHHhhCCCC----Cc------------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCe--EEEEeccC
Q 032292 27 GVFTGYSLLLTALTIPED----GQ------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG--IAVYDNTL 88 (143)
Q Consensus 27 G~g~G~~t~~la~~~~~~----~~------------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG--~li~d~~~ 88 (143)
=|+.|.||-.|+..+... +. ...-+.+|+|++.-. ..-.++++.+.+.+.| +-++|...
T Consensus 7 vC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~DvvLlGPQ---v~y~~~~~~~~~~~~giPV~vI~~~d 83 (102)
T COG1440 7 VCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNADVVLLGPQ---VRYMLKQLKEAAEEKGIPVEVIDMLD 83 (102)
T ss_pred EecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcCCEEEEChH---HHHHHHHHHHHhcccCCCeEEeCHHH
Confidence 399999999998886542 11 122358999998643 2334556777777777 33444333
No 471
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.75 E-value=1.1e+02 Score=23.78 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=34.1
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCC-CCc-----------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
...++|+-+|+| |..+..++..+.. ++. ...-..+|+|+.-..+..+ ++ .+++++|.+ ++|
T Consensus 157 l~Gk~vvViG~g-g~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~---v~--~~~lk~gav-ViD 229 (283)
T PRK14192 157 LAGKHAVVVGRS-AILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPEL---IK--KDWIKQGAV-VVD 229 (283)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCc---CC--HHHcCCCCE-EEE
Confidence 367899999998 3344444333221 122 1122578999977654442 22 256788654 554
No 472
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=26.70 E-value=1.1e+02 Score=23.51 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=22.0
Q ss_pred ceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li 83 (143)
..|+|++..........++.+.+.|++|-+++
T Consensus 59 ~~dvIi~~vp~~~~~~v~~~l~~~l~~g~ivi 90 (298)
T TIGR00872 59 APRVVWVMVPHGIVDAVLEELAPTLEKGDIVI 90 (298)
T ss_pred CCCEEEEEcCchHHHHHHHHHHhhCCCCCEEE
Confidence 35888887654445567788888888875543
No 473
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=26.60 E-value=2.8e+02 Score=20.84 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=40.1
Q ss_pred hhcCCCEEEEEec--cccHHHHHHHhhCCCCCc--------------------------c---------CCCCceeEEEE
Q 032292 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ--------------------------S---------ENEGSFDYAFV 58 (143)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~--------------------------~---------~~~~~fD~v~~ 58 (143)
...+..+||-.|. +.|..++.+|++.+.... . .....+|+++-
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 216 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLD 216 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEE
Confidence 3345678888874 567777778877653100 0 01234777773
Q ss_pred cCCccchHHHHHHHHhcccCCeEEEE
Q 032292 59 DADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 59 d~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.. . ...++.+.+.|+++|.++.
T Consensus 217 ~~-~---~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 217 CV-G---GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred CC-c---hHHHHHHHHHhccCCeEEE
Confidence 32 1 2456677889999998874
No 474
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=26.24 E-value=3.1e+02 Score=21.19 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=28.1
Q ss_pred cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 47 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 47 ~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
|...+.|.+++.-.........+..+.++++.-|++++.
T Consensus 11 P~~~g~yPVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~ 49 (259)
T PF12740_consen 11 PSSAGTYPVVLFLHGFLLINSWYSQLLEHVASHGYIVVA 49 (259)
T ss_pred cCCCCCcCEEEEeCCcCCCHHHHHHHHHHHHhCceEEEE
Confidence 345678998876554434455577888999999999875
No 475
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=26.17 E-value=1.9e+02 Score=22.79 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=36.8
Q ss_pred CcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc
Q 032292 2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ 46 (143)
Q Consensus 2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~ 46 (143)
.+..++-..|..++......++|-+=.-.|..+..+++++...|.
T Consensus 184 ~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~ 228 (299)
T PF04189_consen 184 DLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGN 228 (299)
T ss_pred ccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCce
Confidence 356677788888888888899988888889999999999976444
No 476
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=25.91 E-value=2.8e+02 Score=20.89 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=38.1
Q ss_pred hcCCCEEEEEec--cccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcC
Q 032292 17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 17 ~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~ 60 (143)
..+..+||-.|. +.|..++.+|+..+..-. ....+.+|.++ |+
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi-~~ 221 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYF-DN 221 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEE-Ec
Confidence 345678888883 567777777776542100 00013467665 33
Q ss_pred CccchHHHHHHHHhcccCCeEEEE
Q 032292 61 DKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 ~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.. ...++.+.+.|+++|.++.
T Consensus 222 ~g---~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 222 VG---GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred ch---HHHHHHHHHhcCCCceEEE
Confidence 21 1356777899999998863
No 477
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=25.30 E-value=3.3e+02 Score=21.25 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=17.8
Q ss_pred HhhcCCCEEEEEeccc-cHHHHHHHhhCC
Q 032292 15 LRLVNAKKTIEIGVFT-GYSLLLTALTIP 42 (143)
Q Consensus 15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~ 42 (143)
+...+.++||-.|+|. |..++.+|++.+
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G 211 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG 211 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 3445678999888642 345556677655
No 478
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=25.21 E-value=1.6e+02 Score=20.94 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.3
Q ss_pred HHHhcccCCeEEEEec
Q 032292 71 RLMKLLKVGGIAVYDN 86 (143)
Q Consensus 71 ~~~~~L~~gG~li~d~ 86 (143)
...+.|+|||++++|.
T Consensus 82 ~~~~~l~~gg~vi~ns 97 (181)
T PRK08534 82 DVTSGLKKDGIIIINT 97 (181)
T ss_pred hHhcCcCCCcEEEEEC
Confidence 3468899999999985
No 479
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=25.05 E-value=3.1e+02 Score=20.99 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=31.6
Q ss_pred HHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEe
Q 032292 66 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 130 (143)
Q Consensus 66 ~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~l 130 (143)
....+.+.+.+++|.+|++|+... ...++..+...++ ..+|+.+.+
T Consensus 218 ~~i~~~v~~~~~~G~IILmHd~~~------------------T~~aL~~iI~~Lk-~kGy~fvtl 263 (268)
T TIGR02873 218 SVMVNRVLSKIHPGAMVLMHPTAS------------------STEGLEEMITIIK-EKGYKIGTI 263 (268)
T ss_pred HHHHHHHHhcCCCCcEEEEcCCcc------------------HHHHHHHHHHHHH-HCCCEEEeH
Confidence 345677778889999998876320 3457888988887 445665443
No 480
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=25.03 E-value=3.4e+02 Score=21.24 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=20.2
Q ss_pred ceeEEEEcCCccchHHHHHHHHhccc-CCeEEEE
Q 032292 52 SFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVY 84 (143)
Q Consensus 52 ~fD~v~~d~~~~~~~~~~~~~~~~L~-~gG~li~ 84 (143)
.+|+|+ |+.. ....+..+.+.|+ ++|.++.
T Consensus 253 ~~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 253 GVDYAF-EVIG--SADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCcEEE-ECCC--CHHHHHHHHHHhccCCCEEEE
Confidence 477776 3321 1345677889999 9998875
No 481
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=24.85 E-value=58 Score=24.87 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=16.9
Q ss_pred ceeEEEEcCCccch-HHHHHHHHhcccCCe
Q 032292 52 SFDYAFVDADKDNY-CNYHERLMKLLKVGG 80 (143)
Q Consensus 52 ~fD~v~~d~~~~~~-~~~~~~~~~~L~~gG 80 (143)
.||+|++|..|..+ ...+..+.+..+..|
T Consensus 40 G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g 69 (256)
T PRK10558 40 GFDWLVLDGEHAPNDVSTFIPQLMALKGSA 69 (256)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHhhcC
Confidence 39999999977532 223344444444444
No 482
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=24.84 E-value=1e+02 Score=27.07 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHhhcC-------CCEEEEEeccccHHHHHHHhh
Q 032292 4 LTIHGQLMAMLLRLVN-------AKKTIEIGVFTGYSLLLTALT 40 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~-------~~~vLeiG~g~G~~t~~la~~ 40 (143)
.+.+.+++..+++... ..-++|-|||||=+-.+|.-+
T Consensus 27 R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPa 70 (697)
T PRK11747 27 RAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAG 70 (697)
T ss_pred CHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHH
Confidence 4566677777665432 346799999999666655443
No 483
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=24.66 E-value=2.9e+02 Score=20.36 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=38.8
Q ss_pred hhcCCCEEEEEec--cccHHHHHHHhhCCCCCc---------------------------------c-CCCCceeEEEEc
Q 032292 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ---------------------------------S-ENEGSFDYAFVD 59 (143)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~---------------------------------~-~~~~~fD~v~~d 59 (143)
...+..+||-.|+ +.|..++.+|+..+.... . .....+|+++-.
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~ 215 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDP 215 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEEC
Confidence 3446689999997 456666667766432100 0 112357877643
Q ss_pred CCccchHHHHHHHHhcccCCeEEEE
Q 032292 60 ADKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 60 ~~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.. . ...+.+.+.++++|.++.
T Consensus 216 ~g-~---~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 216 VG-G---DVFEASLRSLAWGGRLLV 236 (323)
T ss_pred cc-H---HHHHHHHHhhccCCEEEE
Confidence 22 1 245567788999998764
No 484
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=24.50 E-value=3.7e+02 Score=21.55 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=17.1
Q ss_pred HHHHHHHhcccCCeEEEEecc
Q 032292 67 NYHERLMKLLKVGGIAVYDNT 87 (143)
Q Consensus 67 ~~~~~~~~~L~~gG~li~d~~ 87 (143)
..++.+.+++++||.+++-.+
T Consensus 280 ~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 280 TVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred HHHHHHHHHhhCCCEEEEeee
Confidence 478888999999999987433
No 485
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=24.47 E-value=1.3e+02 Score=19.60 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=19.6
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292 51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85 (143)
Q Consensus 51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d 85 (143)
...|+||+.............+.+.+++|.++ +|
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~v-iD 97 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEAGVKV-ID 97 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEE-EE
Confidence 46799998765443444444444555666544 44
No 486
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.43 E-value=4e+02 Score=22.32 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=36.4
Q ss_pred cCCCCceeEEEEcCCccc--hHHHHH---HHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 032292 47 SENEGSFDYAFVDADKDN--YCNYHE---RLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 120 (143)
Q Consensus 47 ~~~~~~fD~v~~d~~~~~--~~~~~~---~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~ 120 (143)
.+..+.||+|++|...++ -...|+ .+.+.++|.-+|.+=|.- +..+ ...-.+.|++.+.
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas----iGQa-----------ae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS----IGQA-----------AEAQARAFKETVD 241 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc----ccHh-----------HHHHHHHHHHhhc
Confidence 345789999999975432 223444 456899999887653322 1111 3334788887763
No 487
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.40 E-value=2.8e+02 Score=23.30 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=36.0
Q ss_pred CCceeEEEEcCCccc-----hHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 032292 50 EGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 120 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~-----~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~ 120 (143)
...||+|++|...+. .-+-+..+.+.++|.=+|.+-|... |+ . .....+.|++.+.
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~-GQ---d-----------A~~~A~aF~e~l~ 240 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI-GQ---D-----------AVNTAKAFNEALG 240 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc-ch---H-----------HHHHHHHHhhhcC
Confidence 466899999975432 2234566779999997775544332 21 1 3445789998874
No 488
>PRK04296 thymidine kinase; Provisional
Probab=24.37 E-value=73 Score=22.83 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=21.1
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEE
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 82 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~l 82 (143)
.+.+|+|++|-...-..+.+.++.+.|++.|+-
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~ 108 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIP 108 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHHHcCCe
Confidence 347899999976432233355567777777743
No 489
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=24.32 E-value=2.8e+02 Score=21.85 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=11.2
Q ss_pred CCceeEEEEcCCcc
Q 032292 50 EGSFDYAFVDADKD 63 (143)
Q Consensus 50 ~~~fD~v~~d~~~~ 63 (143)
...||+|++|-.+.
T Consensus 81 ~~~~DviivDEAqr 94 (352)
T PF09848_consen 81 KNKYDVIIVDEAQR 94 (352)
T ss_pred CCcCCEEEEehhHh
Confidence 47899999997653
No 490
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=24.05 E-value=1.2e+02 Score=24.63 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=29.0
Q ss_pred CCCceeEEEE-cC----CccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292 49 NEGSFDYAFV-DA----DKDNYCNYHERLMKLLKVGGIAVYDNTLW 89 (143)
Q Consensus 49 ~~~~fD~v~~-d~----~~~~~~~~~~~~~~~L~~gG~li~d~~~~ 89 (143)
..++||.+.+ |. +...+.+.++.+.+.++|||.+++-+...
T Consensus 292 ~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 292 PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 4678888765 33 12344567888889999999998865543
No 491
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=23.93 E-value=61 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=17.2
Q ss_pred ceeEEEEcCCccch-HHHHHHHHhcccCCe
Q 032292 52 SFDYAFVDADKDNY-CNYHERLMKLLKVGG 80 (143)
Q Consensus 52 ~fD~v~~d~~~~~~-~~~~~~~~~~L~~gG 80 (143)
.||+|++|..|..+ ...+..+.+..+..|
T Consensus 33 G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g 62 (249)
T TIGR03239 33 GFDWLLLDGEHAPNDVLTFIPQLMALKGSA 62 (249)
T ss_pred CCCEEEEecccCCCCHHHHHHHHHHHhhcC
Confidence 39999999977532 223444444444444
No 492
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=23.92 E-value=3.3e+02 Score=20.74 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=39.1
Q ss_pred hcCCCEEEEEecc-ccHHHHHHHhhCCCC-Cc---------------------------------c-CCCCceeEEEEcC
Q 032292 17 LVNAKKTIEIGVF-TGYSLLLTALTIPED-GQ---------------------------------S-ENEGSFDYAFVDA 60 (143)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~t~~la~~~~~~-~~---------------------------------~-~~~~~fD~v~~d~ 60 (143)
..+.++||-.|+| .|..++.+|+..+.. -. . .....+|+|+-..
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~~ 242 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVAT 242 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEECC
Confidence 3456788888874 566666677765432 00 0 1123478776433
Q ss_pred CccchHHHHHHHHhcccCCeEEEE
Q 032292 61 DKDNYCNYHERLMKLLKVGGIAVY 84 (143)
Q Consensus 61 ~~~~~~~~~~~~~~~L~~gG~li~ 84 (143)
.. ...+..+.+.|+++|.++.
T Consensus 243 ~~---~~~~~~~~~~l~~~g~~v~ 263 (343)
T cd08235 243 GS---PEAQAQALELVRKGGRILF 263 (343)
T ss_pred CC---hHHHHHHHHHhhcCCEEEE
Confidence 21 2356677889999998875
No 493
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=23.72 E-value=3.7e+02 Score=21.81 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=38.9
Q ss_pred eeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCC--CCCCcccchHHHHHHHHHHhhcCCCe
Q 032292 53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ--VPDHFRGSSRQAILDLNRSLADDPRV 125 (143)
Q Consensus 53 fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~f~~~l~~~~~~ 125 (143)
-|++|+|-... .-.+.+..-.+||++|...|+-|+- .++... ....... .-.++++|...+....++
T Consensus 90 ~~v~flddCvg---~eVe~a~~~p~~G~viLLENlRfy~--eEEg~~~~~~~~~~a-~~~~v~~fr~~l~~l~Dv 158 (416)
T KOG1367|consen 90 KEVVFLDDCVG---PEVEKAVASPAPGSVILLENLRFYV--EEEGKGKDDSGKKVA-DPAKVKEFRASLASLGDV 158 (416)
T ss_pred cceeeeccccc---HHHHHHhcCCCCCcEEEeecceeeh--hhhcCCccccccccC-CHHHHHHHHHHHHhhccE
Confidence 36788764432 1244566788999999999987652 111111 0111111 345688998888765554
No 494
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=23.65 E-value=2.4e+02 Score=22.57 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=30.1
Q ss_pred cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------cCCCCceeEEEEcC
Q 032292 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------SENEGSFDYAFVDA 60 (143)
Q Consensus 18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------~~~~~~fD~v~~d~ 60 (143)
.++.+|+-.|.| |+.+..|++.+-..+. ......||+++.|-
T Consensus 25 ~~~lrI~itGga-GFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv 84 (350)
T KOG1429|consen 25 SQNLRILITGGA-GFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDV 84 (350)
T ss_pred CCCcEEEEecCc-chHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeec
Confidence 356899999876 9999999988754333 23356788888653
No 495
>PHA03297 envelope glycoprotein L; Provisional
Probab=23.60 E-value=19 Score=25.55 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=12.8
Q ss_pred CCCEEEEEeccccHH
Q 032292 19 NAKKTIEIGVFTGYS 33 (143)
Q Consensus 19 ~~~~vLeiG~g~G~~ 33 (143)
.|++|||.-||+|-.
T Consensus 39 epkrileascgsgpi 53 (185)
T PHA03297 39 EPKRILEASCGSGPI 53 (185)
T ss_pred CchhhhhhccCCCcc
Confidence 579999999999954
No 496
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=23.14 E-value=3.8e+02 Score=21.17 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=25.5
Q ss_pred HHHHHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCCC
Q 032292 7 HGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPE 43 (143)
Q Consensus 7 ~~~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~~ 43 (143)
+-+||..+... .++..|+=+|++.|+--..|.+.+++
T Consensus 43 EIeFLs~~~~~~~~~~~~~VVYiGsApG~Hi~~L~~lf~~ 82 (294)
T PF01358_consen 43 EIEFLSKLQRHGILDGPVTVVYIGSAPGTHIPFLFDLFPD 82 (294)
T ss_dssp HHHHHHHHHHTTTSTT-EEEEEES-SS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCceEEEEecCCCcchHHHHHHHHHh
Confidence 34667766543 24468999999999999999988775
No 497
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=23.12 E-value=1.6e+02 Score=23.68 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=21.1
Q ss_pred eeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292 53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83 (143)
Q Consensus 53 fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li 83 (143)
.|+|++--........++++...++++-.++
T Consensus 72 ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv 102 (329)
T COG0240 72 ADIIVIAVPSQALREVLRQLKPLLLKDAIIV 102 (329)
T ss_pred CCEEEEECChHHHHHHHHHHhhhccCCCeEE
Confidence 7888876655455666777666777776665
No 498
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B ....
Probab=23.10 E-value=1.6e+02 Score=21.66 Aligned_cols=48 Identities=25% Similarity=0.283 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCCCEEEEEeccccHHHHHHH-hhCCCCCccCCCCceeEEEEcCC
Q 032292 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTA-LTIPEDGQSENEGSFDYAFVDAD 61 (143)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la-~~~~~~~~~~~~~~fD~v~~d~~ 61 (143)
....++....+..+...++-+|-+|..++.+| +.+. .+..|.+++-+.
T Consensus 155 ~a~~ia~~~gl~G~~~tv~~acaSgl~Al~~A~~~I~-------~G~~d~~lvgg~ 203 (254)
T PF00109_consen 155 AAGRIAILFGLRGPSYTVSTACASGLAALEAAYRAIR-------SGEADVALVGGV 203 (254)
T ss_dssp HHHHHHHHHTB-SSEEEEE-GGGHHHHHHHHHHHHHH-------TTSSSEEEEEEE
T ss_pred cccchhhhcCCCCccccccccccccccccchhccccc-------cccccccccccc
Confidence 44556666677789999999999999999988 4443 467899987653
No 499
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.84 E-value=5.2e+02 Score=22.62 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=35.7
Q ss_pred CCceeEEEEcCCccchHHHHHHHH------hcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 032292 50 EGSFDYAFVDADKDNYCNYHERLM------KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 123 (143)
Q Consensus 50 ~~~fD~v~~d~~~~~~~~~~~~~~------~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~ 123 (143)
...+|++.+|+......+.+..+. +...+.-++|+|++..- ...+...+++.+.+-|
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------------t~~a~naLLK~LEePp 155 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------------STAAFNAFLKTLEEPP 155 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------------CHHHHHHHHHHHhCCC
Confidence 345788888874333233333332 34455568888875321 1234677888887655
Q ss_pred CeeEEEe
Q 032292 124 RVQLSHV 130 (143)
Q Consensus 124 ~~~~~~l 130 (143)
...+.++
T Consensus 156 ~~tv~IL 162 (620)
T PRK14954 156 PHAIFIF 162 (620)
T ss_pred CCeEEEE
Confidence 5544443
No 500
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=22.73 E-value=3.5e+02 Score=21.49 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHH
Q 032292 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTA 38 (143)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la 38 (143)
+|..-+|-..++...+.+.++-..+| ..++.++
T Consensus 32 g~~~~~le~~la~~~g~~~~v~~~sg--t~al~la 64 (379)
T PRK11658 32 GPKNQALEQAFCQLTGNQHAIAVSSA--TAGMHIT 64 (379)
T ss_pred CHhHHHHHHHHHHHhCCCeEEEECCH--HHHHHHH
Confidence 56667777888887776776655554 4444433
Done!