BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032293
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Query: 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKES 67
PE LP ++ R++K+ L PD +++ K+A A +A +F+ Y ++ AN+ +
Sbjct: 5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKG 59
Query: 68 KRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 108
KR+T+NA DVL A+EE++F FV PL+++L+ +R++ GK+
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Query: 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKES 67
PE LP ++ R++K+ L PD +++ K+A A +A +F+ Y ++ AN+ +
Sbjct: 5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKG 59
Query: 68 KRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 108
KR+T+NA DVL A+EE++F FV PL+++L+ +R++ GK+
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Query: 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKES 67
PE LP ++ R++K+ L PD +++ K+A A +A +F+ Y ++ AN+ +
Sbjct: 5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKG 59
Query: 68 KRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 108
KR+T+NA DVL A+EE++F FV PL+++L+ +R++ GK+
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Query: 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKES 67
PE LP ++ R++K+ L PD +++ K+A A +A +F+ Y ++ AN+ +
Sbjct: 5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKG 59
Query: 68 KRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 108
KR+T+NA DVL A+EE++F FV PL+++L+ +R++ GK+
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 65/101 (64%), Gaps = 5/101 (4%)
Query: 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKES 67
PE LP ++ R++K+ L PD +++ K+A A +A +F+ Y ++ AN+ +
Sbjct: 5 PEDLNLPNAVITRIIKEAL----PD-GVNISKEARSAISRAASVFVLYATSCANNFAMKG 59
Query: 68 KRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 108
KR+T+NA DVL A+EE++F F+ PL+++L+ +R+ GK+
Sbjct: 60 KRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKK 100
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESK 68
E+++LP IV R++K L P+ + K++ LA ++A+++IHYL+A + D S
Sbjct: 3 ESQDLPGAIVNRIIKASL----PE-GVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSG 57
Query: 69 RQTINAEDVLKAIEEIDFTEFVDPLRDSL 97
R TI+ +DV +AIEEIDF F L + L
Sbjct: 58 RSTISPKDVFQAIEEIDFENFKPQLEEYL 86
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Query: 13 LPKTIVRRVVKDKLHNCSPD---TDISVHKDALLAFCESARIFIHYLSATANDICKESKR 69
P+ V+++ K+ + N S D +++ + KD+++A S+ +F+ +L A I K+ R
Sbjct: 31 FPRATVQKLAKN-IMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGR 89
Query: 70 QTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSKSKEEKKKQKVEG 125
+TINA+D+L A+E+ +F+ F+ ++ L F A ++ K K +KK K EG
Sbjct: 90 KTINAQDILSALEKAEFSGFIPEVKQKLSVFESNIALRK----KHKADKKVPKPEG 141
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K L + + KDA E FI +++ A+D C++ KR+TI
Sbjct: 32 LPIANVSRIMKKALP-----ANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTI 86
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSKSK 115
N +D+L A+ + F ++V+PL+ L FR+ G+R G + +
Sbjct: 87 NGDDLLWAMTTLGFEDYVEPLKVYLQRFREIE-GERTGLGRPQ 128
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K N P T + KDA E FI ++++ A++ C + KR+TI
Sbjct: 57 LPIANVARIMK----NAIPQTG-KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 111
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRA 109
N ED+L A+ + F +V+PL+ L +FR+ G++
Sbjct: 112 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 148
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K N P T + KDA E FI ++++ A++ C + KR+TI
Sbjct: 59 LPIANVARIMK----NAIPQTG-KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRA 109
N ED+L A+ + F +V+PL+ L +FR+ G++
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K N P T + KDA E FI ++++ A++ C + KR+TI
Sbjct: 59 LPIANVARIMK----NAIPQTG-KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRA 109
N ED+L A+ + F +V+PL+ L +FR+ G++
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K N P T + KDA E FI ++++ A++ C + KR+TI
Sbjct: 59 LPIANVARIMK----NAIPQTG-KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRA 109
N ED+L A+ + F +V+PL+ L +FR+ G++
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP + R++K L + + KDA E FI ++++ A+D C+ KR+TI
Sbjct: 34 LPIANISRIMKRGLP-----LNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTI 88
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQ-----KNAGKRAGTSKSKEEKKKQKV 123
N +D+L A+ + F +++DPL+ L +R+ K +GK G S +K + + +V
Sbjct: 89 NGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGK-GGESSAKRDGQPSQV 143
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K N P T + KDA E FI ++++ A++ C + KR+TI
Sbjct: 59 LPIANVARIMK----NAIPQTG-KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRA 109
N ED+L A+ + F +V+PL+ L +FR+ G++
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP++I+ R+VK L P+ + V K+AL A SA +F+ +L++ + +I + R+ +
Sbjct: 17 LPRSIIMRLVKGVL----PEKSL-VQKEALKAMINSATLFVSFLTSASGEIATNNNRKIL 71
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEF 100
+DVL A++EI++ EF L+ L+ +
Sbjct: 72 MPQDVLNALDEIEYPEFSKTLKKHLEAY 99
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K N P T + KDA E FI ++++ A++ C + KR+TI
Sbjct: 59 LPIANVARIMK----NAIPQTG-KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRA 109
N ED+L A+ + F +V+PL+ L +FR+ G++
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
PK+ ++ + K+ L PD D + KDAL A +A +F+ Y+++ N + R+ I
Sbjct: 37 YPKSTIKNLAKETL----PD-DAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKI 91
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKR 108
+DV A++++D +FV + S++EF Q+ A ++
Sbjct: 92 TPQDVFVALKDVDLAQFVPSVTQSVNEFEQEVAQRK 127
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP + R++K + + + KDA E FI ++++ A+D C++ KR+TI
Sbjct: 39 LPIANISRIMKKAV-----PANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTI 93
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQ 102
N ED+L A+ + F E+VDPL+ L ++R+
Sbjct: 94 NGEDLLFAMGTLGFEEYVDPLKIYLHKYRE 123
>sp|Q750A4|DPB4_ASHGO DNA polymerase epsilon subunit D OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB4
PE=3 SV=1
Length = 204
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 2 ETEKVVPEAEELPKTIVRRVVKDKLH----NCSPDTDISVHKDALLAFCESARIFIHYLS 57
E EK+ + P++I+ + KD +H D + + KDA LA S+ +F+++L
Sbjct: 61 EQEKLTVDDLLFPRSIITSLAKDAVHQAVQTAEQDPRVMLSKDASLALQRSSTVFVNHLL 120
Query: 58 ATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSKSKEE 117
A I + + R++ + EDVLKA+++I F +R+ + E+ ++ +RA + + +E
Sbjct: 121 MHARQIAQSNDRKSCSGEDVLKALDQIGLAGFESVVRERVVEYEKEVQRRRAEKTPAADE 180
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
Query: 13 LPKTIVRRVVKDKLHN---CSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKR 69
LPK V +++K+ L CS +T +D +L C FIH +S+ ANDIC ++
Sbjct: 13 LPKATVSKLIKEMLPQDVKCSNET-----RDLILECCVE---FIHLISSEANDICGREQK 64
Query: 70 QTINAEDVLKAIEEIDFTEFVDPLRDSLD 98
+TI AE V+KA+ E+ F+++ + D D
Sbjct: 65 RTIAAEHVIKALTELGFSDYTQKVSDVYD 93
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K + + + KDA E FI ++++ A++ C + KR+TI
Sbjct: 60 LPIANVARIMKTSIPSSG-----KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 114
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRA 109
N ED+L A+ + F +V+PL+ L ++R+ G++
Sbjct: 115 NGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKG 151
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K L + + KDA E FI +++ A+D C+ KR+TI
Sbjct: 26 LPIANVSRIMKKAL-----PANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTI 80
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQ 102
N +D+L A+ + F ++V+PL+ L ++R+
Sbjct: 81 NGDDLLWAMTTLGFEDYVEPLKVYLQKYRE 110
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LPK V+++V D L D++ K+A E FIH +S+ AN+IC++ ++TI
Sbjct: 12 LPKATVQKMVSDIL-----PVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTI 66
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSK 113
AE ++KA+E ++F E++ + E +++ + +SK
Sbjct: 67 AAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSK 107
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP + R++K L P+ I KDA E FI ++++ A+D C++ KR+T+
Sbjct: 26 LPIANISRIMKKAL---PPNGKIG--KDAKDTVQECVSEFISFITSEASDKCQKEKRKTV 80
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSKSKEEKKKQKVEG 125
N +D+L A+ + F ++++PL+ L +R+ G G+ KS + + G
Sbjct: 81 NGDDLLWAMATLGFEDYLEPLKIYLARYRELE-GDNKGSGKSGDGSNRDAGGG 132
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 52 FIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRA 109
FI ++++ A++ C + KR+TIN ED+L A+ + F +V+PL+ L +FR+ G++
Sbjct: 8 FISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 65
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
+P+ + +++K+ L N + V DA FIH +S+ AN+IC +S+++TI
Sbjct: 13 IPRAAINKMIKETLPN------VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSK 113
+ E V++A+E + F ++ +++ L E + +R +S+
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSR 107
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
+P+ + +++K+ L N + V DA FIH +S+ AN+IC +S+++TI
Sbjct: 13 IPRAAINKMIKETLPN------VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSK 113
+ E V++A+E + F ++ +++ L E + +R +S+
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSR 107
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
+P+ + +++K+ L N + V DA FIH +S+ AN+IC +S+++TI
Sbjct: 13 IPRAAINKMIKETLPN------VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSK 113
+ E V++A+E + F ++ +++ L E + +R +S+
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSR 107
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
+P+ + +++K+ L N + V DA FIH +S+ AN+IC +S+++TI
Sbjct: 13 IPRAAINKMIKETLPN------VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSK 113
+ E V++A+E + F ++ +++ L E + +R +S+
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSR 107
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP + R++K L + + KDA E FI ++++ A+D C+ KR+TI
Sbjct: 35 LPIANISRIMKRGL-----PANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTI 89
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSKSKEEKKKQKVEGEASKKS 131
N +D+L A+ + F ++++PL+ L +R+ G G++K + K+ +G++S+
Sbjct: 90 NGDDLLWAMATLGFEDYMEPLKVYLMRYREME-GDTKGSAKGGDPNAKK--DGQSSQNG 145
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP + R++K L N + V KDA + FI ++++ A+D C++ KR+TI
Sbjct: 53 LPIANIIRIMKKALPN-----NAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTI 107
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQ 102
N ED++ A+ + F +V+PL+ L ++R+
Sbjct: 108 NGEDIIAAMVSLGFENYVEPLKVYLLKYRE 137
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP + R++K + + + KDA E FI ++++ A+D C+ KR+TI
Sbjct: 36 LPIANISRIMKKAI-----PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 90
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSKSKEEKKKQKVEGEASKKS 131
N +D+L A+ + F ++++PL+ L ++R+ G T+KS + K+ G S
Sbjct: 91 NGDDLLWAMATLGFEDYIEPLKVYLQKYREME-GDSKLTAKSSDGSIKKDALGHVGASS 148
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K+ L P T V KDA E FI ++++ A D C KR+TI
Sbjct: 27 LPINNVARLMKNTL----PAT-TKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTI 81
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGK 107
N ED+L ++ + F + + L+ L ++RQ+ A K
Sbjct: 82 NGEDILLSLHALGFENYAEVLKIYLAKYRQQQAIK 116
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LPK + +++K+ L D+ V +DA E FI+ +S+ +ND+C + ++TI
Sbjct: 16 LPKATMTKIIKEML-----PPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTI 70
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFR-------QKNAGKRAGTSKSKEE--KKKQKV 123
E VLKA++ + F E+++ + + ++ + Q++ G ++EE ++Q++
Sbjct: 71 APEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTEEEAAAEQQRM 130
Query: 124 EGEASKKSCG 133
EA + G
Sbjct: 131 FAEARARMNG 140
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP + R++K + + + KDA E FI ++++ A+D C+ KR+TI
Sbjct: 43 LPIANISRIMKKAIP-----ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 97
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQ 102
N +D+L A+ + F ++++PL+ L ++R+
Sbjct: 98 NGDDLLWAMATLGFEDYIEPLKVYLQKYRE 127
>sp|Q04603|DPB4_YEAST DNA polymerase epsilon subunit D OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB4 PE=1 SV=1
Length = 196
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 35 ISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLR 94
+ ++KDA LA A +F+++L A +I K +++ + +DVL A++ I + P+R
Sbjct: 53 LLINKDASLALQRGATVFVNHLLLFAREIAKSQDKKSCSVDDVLSALDHIGHSALKGPVR 112
Query: 95 DSLDEFR 101
D LDE++
Sbjct: 113 DKLDEYQ 119
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K L + + KDA E FI +++ A+D C+ KR+TI
Sbjct: 41 LPIANVGRIMKKVL-----PGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTI 95
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFR 101
N +D++ AI + F ++V PL+ L ++R
Sbjct: 96 NGDDIIWAITTLGFEDYVAPLKVYLCKYR 124
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K+ L P +S KDA E I ++++ A+D C KR+TI
Sbjct: 42 LPINNVARLMKNTL---PPSAKVS--KDAKECMQECVSELISFVTSEASDRCAADKRKTI 96
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGK 107
N ED+L ++ + F + + L+ L ++RQ+ A K
Sbjct: 97 NGEDILISLHALGFENYAEVLKIYLAKYRQQQALK 131
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 35/51 (68%)
Query: 52 FIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQ 102
+I +++ AN+ C+ +R+TI AED+L A+ ++ F +VDPL ++ +R+
Sbjct: 98 YISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148
>sp|Q6CJD7|DPB4_KLULA DNA polymerase epsilon subunit D OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB4 PE=3 SV=1
Length = 216
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 2 ETEKVVPEAEELPKTIVRRVVKDKLHNCSPDTD----ISVHKDALLAFCESARIFIHYLS 57
E EK+ + PK+I+ + K+ L N + I+V KDA LA SA +F+++L
Sbjct: 22 EQEKISIDDLLFPKSIITSLAKESLQNAFQKGEEERRITVSKDAALAMQRSATVFVNHLL 81
Query: 58 ATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQ 102
A K+S R++ N +D++ A++ + L + E+++
Sbjct: 82 MFARMNAKDSNRKSCNDQDIMAALDTLGLGALESILTGKMQEYQE 126
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LPK V++++ + L D D+ KDA S FI LS+ A+++ ++TI
Sbjct: 10 LPKATVQKMISEIL-----DQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTI 64
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGTSKSK 115
E V+KA+EE+++ EF+ L + L F+ K SK K
Sbjct: 65 APEHVIKALEELEYNEFIPFLEEILLNFKGSQKVKETRDSKFK 107
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 35/51 (68%)
Query: 52 FIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQ 102
+I +++ AN+ C+ +R+TI AEDVL A+ ++ F ++++PL L +R+
Sbjct: 97 YISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRE 147
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 4 EKVVPEAEE----LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSAT 59
E + P AE+ LP+ + +++K+ + P ++ L+ C S FIH +S+
Sbjct: 7 ELLPPSAEDDELTLPRASINKIIKELV----PTVRVANESRELILNCCSE--FIHLISSE 60
Query: 60 ANDICKESKRQTINAEDVLKAIEEIDFTEF 89
AN++C ++TINAE VL+A+E + F ++
Sbjct: 61 ANEVCNMRNKKTINAEHVLEALERLGFHDY 90
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K L P+ + + K+A + FI +++ A++ C + KR+TI
Sbjct: 12 LPIANVARIMKSAL----PE-NAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTI 66
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNA 105
EDVL A+ + F + + L+ SL ++R++ A
Sbjct: 67 TGEDVLLALNTLGFENYAEVLKISLTKYREQQA 99
>sp|Q6FXD0|DPB4_CANGA DNA polymerase epsilon subunit D OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DPB4 PE=3 SV=1
Length = 191
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 30 SPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89
+P + V KDA +A SA +F+++L A ++ KE R++ N +D+L A+E +
Sbjct: 67 TPAKKLVVTKDASMALQHSATVFVNHLLMYARELAKEQDRRSCNVDDILNALEHMGHPGL 126
Query: 90 VDPLRDSLDEFRQ 102
+ + LD++++
Sbjct: 127 KPLVANRLDDYQE 139
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 52 FIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNA---GKR 108
FI ++++ A+D C + KR+TIN +D++ ++ + F ++V+PL+ L +R+ G R
Sbjct: 61 FISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSR 120
Query: 109 A 109
A
Sbjct: 121 A 121
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K+ L + V K+A E FI +++ A+D C + KR+T+
Sbjct: 56 LPIANVGRIMKNIL-----PANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV 110
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFR 101
N +D+ A+ + F ++ L+ L +R
Sbjct: 111 NGDDICWAMANLGFDDYAAQLKKYLHRYR 139
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K L P ++ + K+A E A FI +++ A++ C R+T+
Sbjct: 8 LPIANVGRLMKQIL----P-SNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLDEFRQ 102
N +D+ A+ + + D + L ++R+
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYRE 92
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 52 FIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKNAGKRAGT 111
F+ ++ A++ K R+T+ ED L + ++ F +VDP+ + +R+ +RAG
Sbjct: 68 FVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREF---ERAGG 124
Query: 112 SK 113
++
Sbjct: 125 NR 126
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDI-SVHKDALLAFCESARIFIHYLSATANDICKESKRQT 71
LP +R+V+K D D+ + +A + F ++ IFI L+ A + + +KR+T
Sbjct: 160 LPFARIRKVMKT-------DEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRT 212
Query: 72 INAEDVLKAIEEIDFTEFV 90
+ D+ +A+++ D +F+
Sbjct: 213 LQKADIAEALQKSDMFDFL 231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,495,250
Number of Sequences: 539616
Number of extensions: 1889206
Number of successful extensions: 12296
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 10796
Number of HSP's gapped (non-prelim): 1241
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)