Query 032293
Match_columns 143
No_of_seqs 126 out of 556
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:51:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2byk_B Chrac-14; nucleosome sl 100.0 2.5E-31 8.6E-36 198.2 11.0 103 8-115 5-107 (128)
2 1jfi_B DR1 protein, transcript 100.0 6.6E-31 2.3E-35 205.6 9.4 98 7-110 10-107 (179)
3 1n1j_A NF-YB; histone-like PAI 100.0 9.5E-29 3.2E-33 174.3 10.7 92 6-102 2-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 2.6E-22 9E-27 136.9 7.4 68 11-84 3-70 (76)
5 1f1e_A Histone fold protein; a 99.8 9.2E-21 3.2E-25 145.2 8.1 75 11-91 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 2.7E-19 9.3E-24 118.9 8.0 66 12-84 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 2.7E-18 9.1E-23 125.0 9.2 91 8-105 3-95 (111)
8 2byk_A Chrac-16; nucleosome sl 99.7 8.5E-19 2.9E-23 132.3 4.3 96 9-110 16-115 (140)
9 4g92_C HAPE; transcription fac 99.7 5.1E-17 1.7E-21 119.3 7.3 75 10-90 39-113 (119)
10 1n1j_B NF-YC; histone-like PAI 99.7 1.9E-16 6.4E-21 112.4 7.2 75 11-91 18-92 (97)
11 1f1e_A Histone fold protein; a 99.6 2.9E-16 1E-20 120.2 7.9 70 7-83 77-146 (154)
12 2hue_C Histone H4; mini beta s 99.6 2.2E-15 7.6E-20 104.3 7.6 71 12-89 10-80 (84)
13 1ku5_A HPHA, archaeal histon; 99.6 4.5E-15 1.5E-19 99.2 7.8 64 12-82 6-69 (70)
14 1id3_B Histone H4; nucleosome 99.6 3.9E-15 1.3E-19 106.8 7.7 71 12-89 28-98 (102)
15 1tzy_D Histone H4-VI; histone- 99.5 2.8E-14 9.5E-19 102.2 7.6 71 12-89 29-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.5 3.4E-14 1.2E-18 101.8 7.2 71 12-89 29-99 (103)
17 1jfi_A Transcription regulator 99.4 1.7E-13 5.6E-18 97.4 6.0 77 10-92 9-85 (98)
18 2hue_B Histone H3; mini beta s 99.2 5.4E-11 1.8E-15 81.5 8.3 74 10-85 1-74 (77)
19 3nqj_A Histone H3-like centrom 99.1 1.1E-10 3.9E-15 80.8 6.6 75 11-85 2-76 (82)
20 2yfv_A Histone H3-like centrom 99.0 6.5E-10 2.2E-14 79.5 7.6 75 8-82 23-98 (100)
21 3r45_A Histone H3-like centrom 99.0 7.8E-10 2.7E-14 84.6 7.9 77 8-84 73-149 (156)
22 3nqu_A Histone H3-like centrom 99.0 7.9E-10 2.7E-14 83.3 5.9 79 8-86 57-135 (140)
23 1tzy_C Histone H3; histone-fol 98.9 1.8E-09 6E-14 81.1 6.4 75 9-85 59-133 (136)
24 4dra_A Centromere protein S; D 98.9 4.5E-09 1.6E-13 76.6 8.0 78 17-104 32-109 (113)
25 1taf_B TFIID TBP associated fa 98.9 8.4E-09 2.9E-13 69.4 8.3 65 11-82 5-69 (70)
26 3vh5_A CENP-S; histone fold, c 98.8 6.2E-09 2.1E-13 78.4 7.1 78 17-104 24-101 (140)
27 3b0b_B CENP-S, centromere prot 98.8 1.7E-08 5.8E-13 72.9 7.8 78 17-104 24-101 (107)
28 3v9r_A MHF1, uncharacterized p 98.7 2.8E-08 9.7E-13 69.8 7.2 63 17-83 17-79 (90)
29 1taf_A TFIID TBP associated fa 98.6 3E-07 1E-11 61.4 7.9 61 16-83 5-65 (68)
30 2nqb_C Histone H2A; nucleosome 98.5 2.8E-07 9.7E-12 67.8 7.7 68 10-83 21-88 (123)
31 1tzy_A Histone H2A-IV; histone 98.5 3.5E-07 1.2E-11 67.9 7.7 67 10-82 23-89 (129)
32 1id3_C Histone H2A.1; nucleoso 98.5 2.9E-07 9.9E-12 68.5 7.2 68 10-83 23-90 (131)
33 2f8n_G Core histone macro-H2A. 98.5 3.7E-07 1.3E-11 66.9 7.5 68 10-83 20-87 (120)
34 2ly8_A Budding yeast chaperone 98.5 3.2E-07 1.1E-11 67.5 7.1 54 36-89 64-117 (121)
35 1f66_C Histone H2A.Z; nucleoso 98.4 7.3E-07 2.5E-11 66.0 7.6 69 10-83 25-93 (128)
36 2f8n_K Histone H2A type 1; nuc 98.4 6.9E-07 2.3E-11 67.9 7.5 68 10-83 42-109 (149)
37 2l5a_A Histone H3-like centrom 98.3 1.5E-06 5E-11 70.3 6.6 76 10-85 9-85 (235)
38 2nqb_D Histone H2B; nucleosome 98.3 2.6E-06 8.8E-11 62.9 7.1 63 16-84 37-99 (123)
39 1tzy_B Histone H2B; histone-fo 98.2 3.2E-06 1.1E-10 62.6 7.1 63 16-84 40-102 (126)
40 2jss_A Chimera of histone H2B. 98.2 4.5E-06 1.5E-10 65.2 7.4 69 10-83 103-171 (192)
41 2l5a_A Histone H3-like centrom 98.1 2.1E-06 7E-11 69.4 4.5 53 33-85 175-227 (235)
42 4dra_E Centromere protein X; D 98.0 4.9E-05 1.7E-09 52.6 8.8 71 10-84 10-80 (84)
43 2jss_A Chimera of histone H2B. 97.9 3.1E-05 1.1E-09 60.4 7.9 62 16-83 7-68 (192)
44 3b0b_C CENP-X, centromere prot 97.9 6.3E-05 2.1E-09 51.7 7.9 70 10-83 6-75 (81)
45 1h3o_B Transcription initiatio 97.7 0.00016 5.6E-09 49.1 8.0 66 12-83 5-70 (76)
46 1bh9_B TAFII28; histone fold, 97.7 0.00022 7.4E-09 49.7 8.3 68 12-86 16-84 (89)
47 2ly8_A Budding yeast chaperone 97.2 0.00095 3.3E-08 48.9 6.8 95 12-108 1-99 (121)
48 3v9r_B MHF2, uncharacterized p 96.5 0.0058 2E-07 42.5 5.9 50 13-66 2-51 (88)
49 3uk6_A RUVB-like 2; hexameric 90.7 0.76 2.6E-05 36.5 7.3 67 13-83 259-329 (368)
50 3ksy_A SOS-1, SON of sevenless 90.1 0.99 3.4E-05 42.5 8.5 67 10-83 102-168 (1049)
51 2c9o_A RUVB-like 1; hexameric 84.3 2.1 7.3E-05 35.9 6.4 62 34-95 383-449 (456)
52 2v1u_A Cell division control p 83.1 3.4 0.00012 32.4 6.8 71 15-87 203-279 (387)
53 3fes_A ATP-dependent CLP endop 77.8 8.2 0.00028 27.2 6.8 61 13-85 57-118 (145)
54 2qby_A CDC6 homolog 1, cell di 77.7 8.6 0.00029 29.9 7.5 76 13-90 197-278 (386)
55 1fnn_A CDC6P, cell division co 77.2 20 0.00067 28.1 9.5 77 13-91 193-281 (389)
56 3kw6_A 26S protease regulatory 77.0 2.7 9.4E-05 26.7 3.7 32 53-84 42-73 (78)
57 3fh2_A Probable ATP-dependent 76.9 10 0.00035 26.7 7.1 61 12-84 55-117 (146)
58 3aji_B S6C, proteasome (prosom 70.7 5.5 0.00019 25.5 4.0 33 53-85 40-72 (83)
59 3fh2_A Probable ATP-dependent 70.7 6.6 0.00023 27.7 4.8 36 36-83 6-41 (146)
60 1khy_A CLPB protein; alpha hel 68.7 14 0.00049 25.5 6.2 36 36-83 5-40 (148)
61 2y1q_A CLPC N-domain, negative 68.6 6 0.0002 27.7 4.1 36 36-83 5-40 (150)
62 1g8p_A Magnesium-chelatase 38 68.5 16 0.00054 28.3 7.0 52 34-85 265-323 (350)
63 2dzn_B 26S protease regulatory 67.5 6.6 0.00023 25.3 3.8 28 58-85 42-69 (82)
64 3k1j_A LON protease, ATP-depen 67.4 26 0.00089 30.4 8.8 49 35-83 313-374 (604)
65 1k6k_A ATP-dependent CLP prote 67.3 5.4 0.00018 27.7 3.6 33 37-81 2-34 (143)
66 2y1q_A CLPC N-domain, negative 67.0 18 0.00062 25.1 6.4 59 13-83 55-114 (150)
67 3vlf_B 26S protease regulatory 66.5 7.3 0.00025 25.6 4.0 34 53-86 40-73 (88)
68 3fes_A ATP-dependent CLP endop 66.3 7 0.00024 27.6 4.1 38 35-84 6-43 (145)
69 1k6k_A ATP-dependent CLP prote 65.9 18 0.00063 24.8 6.3 38 34-83 77-114 (143)
70 2qby_B CDC6 homolog 3, cell di 64.4 20 0.00069 28.0 6.9 71 13-87 197-273 (384)
71 3zri_A CLPB protein, CLPV; cha 64.3 26 0.00087 25.9 7.1 59 12-83 73-134 (171)
72 2krk_A 26S protease regulatory 61.8 8.8 0.0003 25.2 3.7 30 55-84 52-81 (86)
73 1wwi_A Hypothetical protein TT 59.1 18 0.00062 27.0 5.3 58 13-77 3-60 (148)
74 2f3n_A SH3 and multiple ankyri 57.2 9.4 0.00032 24.4 3.1 23 72-94 5-27 (76)
75 1khy_A CLPB protein; alpha hel 55.8 36 0.0012 23.3 6.3 36 35-82 81-116 (148)
76 1r4v_A Hypothetical protein AQ 55.7 12 0.00042 28.5 3.9 59 12-77 26-84 (171)
77 2chg_A Replication factor C sm 54.7 21 0.00071 24.9 4.9 64 13-82 161-224 (226)
78 2r44_A Uncharacterized protein 53.9 72 0.0025 24.6 8.4 51 34-84 224-297 (331)
79 1njg_A DNA polymerase III subu 53.2 21 0.0007 25.2 4.7 64 13-81 185-248 (250)
80 3bq7_A Diacylglycerol kinase d 52.3 12 0.00042 24.2 3.1 24 71-94 9-32 (81)
81 1in4_A RUVB, holliday junction 51.7 46 0.0016 26.3 7.0 55 34-88 197-254 (334)
82 3h4m_A Proteasome-activating n 49.6 19 0.00065 27.2 4.2 33 52-84 226-258 (285)
83 3zri_A CLPB protein, CLPV; cha 47.9 18 0.00062 26.7 3.8 37 36-84 24-60 (171)
84 3bos_A Putative DNA replicatio 45.5 47 0.0016 23.6 5.7 61 16-82 177-241 (242)
85 1lv7_A FTSH; alpha/beta domain 42.4 32 0.0011 25.6 4.5 33 53-85 221-253 (257)
86 1kw4_A Polyhomeotic; SAM domai 40.6 23 0.00077 23.6 3.0 24 71-94 16-40 (89)
87 1w5s_A Origin recognition comp 39.7 1.2E+02 0.0042 23.6 7.7 71 13-85 215-294 (412)
88 3pxg_A Negative regulator of g 39.3 89 0.0031 26.1 7.2 61 12-84 54-115 (468)
89 2d8c_A Phosphatidylcholine:cer 38.5 13 0.00044 25.4 1.5 23 71-93 19-41 (97)
90 2gle_A Neurabin-1; SAM domain, 37.4 12 0.00042 23.5 1.2 22 72-93 7-28 (74)
91 3pxi_A Negative regulator of g 37.1 91 0.0031 27.6 7.2 61 12-84 54-115 (758)
92 1hqc_A RUVB; extended AAA-ATPa 37.0 70 0.0024 24.3 5.7 72 12-87 167-241 (324)
93 4b4t_L 26S protease subunit RP 36.6 35 0.0012 29.1 4.2 31 53-83 391-421 (437)
94 1uxc_A FRUR (1-57), fructose r 35.5 52 0.0018 20.4 4.0 39 8-52 7-45 (65)
95 3pm8_A PFCDPK2, calcium-depend 35.5 1E+02 0.0035 21.9 6.2 27 62-88 64-90 (197)
96 2kru_A Light-independent proto 35.4 31 0.0011 22.1 2.9 51 34-85 3-54 (63)
97 4b4t_I 26S protease regulatory 35.3 37 0.0013 29.2 4.2 32 52-83 391-422 (437)
98 4b4t_M 26S protease regulatory 35.0 36 0.0012 29.0 4.1 32 53-84 391-422 (434)
99 5pal_A Parvalbumin; calcium-bi 33.2 59 0.002 20.4 4.1 40 59-98 45-87 (109)
100 4b4t_H 26S protease regulatory 32.8 40 0.0014 29.3 4.0 32 53-84 419-450 (467)
101 1bh9_A TAFII18; histone fold, 32.3 64 0.0022 19.0 3.8 28 35-62 17-44 (45)
102 3pxg_A Negative regulator of g 32.2 76 0.0026 26.5 5.6 38 36-85 5-42 (468)
103 1r6b_X CLPA protein; AAA+, N-t 31.7 91 0.0031 27.4 6.3 39 34-84 77-115 (758)
104 4b4t_J 26S protease regulatory 31.6 47 0.0016 28.1 4.2 32 52-83 357-388 (405)
105 3pfi_A Holliday junction ATP-d 30.4 54 0.0019 25.3 4.1 70 14-87 185-257 (338)
106 2l09_A ASR4154 protein; proto- 29.5 33 0.0011 21.9 2.2 51 34-85 2-53 (62)
107 4a4j_A Pacszia, cation-transpo 29.1 32 0.0011 19.9 2.1 18 70-87 48-65 (69)
108 1sxj_D Activator 1 41 kDa subu 28.6 54 0.0018 25.2 3.8 69 12-85 191-264 (353)
109 3vfd_A Spastin; ATPase, microt 28.6 2.2E+02 0.0076 22.6 8.8 69 15-87 284-368 (389)
110 1ofh_A ATP-dependent HSL prote 28.6 1.2E+02 0.0041 22.6 5.7 52 35-86 233-301 (310)
111 1jr3_A DNA polymerase III subu 28.1 68 0.0023 24.8 4.4 68 12-84 177-244 (373)
112 3h4s_E KCBP interacting Ca2+-b 26.9 1.1E+02 0.0039 20.3 4.9 28 59-86 44-71 (135)
113 2ns0_A Hypothetical protein; r 26.7 1.4E+02 0.0049 20.0 5.2 33 66-98 19-51 (85)
114 1ixz_A ATP-dependent metallopr 26.7 60 0.002 24.1 3.7 27 56-82 228-254 (254)
115 1tiz_A Calmodulin-related prot 26.5 89 0.0031 17.4 4.5 24 64-87 10-33 (67)
116 3bs7_A Protein aveugle; sterIl 26.5 43 0.0015 21.0 2.4 23 72-94 6-30 (78)
117 1ixs_A Holliday junction DNA h 25.9 31 0.001 21.6 1.6 14 75-88 18-31 (62)
118 3pvs_A Replication-associated 25.7 2.1E+02 0.0071 23.9 7.2 73 12-85 164-245 (447)
119 1v85_A Similar to ring finger 25.7 38 0.0013 22.3 2.1 23 71-93 19-43 (91)
120 3iwl_A Copper transport protei 25.6 41 0.0014 19.8 2.1 17 71-87 45-61 (68)
121 2chq_A Replication factor C sm 25.4 1.2E+02 0.0042 22.6 5.3 67 12-84 160-226 (319)
122 3fs7_A Parvalbumin, thymic; ca 25.1 1.3E+02 0.0044 18.7 5.8 79 11-97 5-87 (109)
123 2e8o_A SAM domain and HD domai 25.0 34 0.0012 23.1 1.8 23 71-93 29-53 (103)
124 4b4t_K 26S protease regulatory 24.9 78 0.0027 26.8 4.4 31 53-83 383-413 (428)
125 3li6_A Calcium-binding protein 24.9 80 0.0027 17.7 3.3 17 66-82 47-63 (66)
126 3b9p_A CG5977-PA, isoform A; A 24.8 1.3E+02 0.0044 22.6 5.3 57 36-92 208-280 (297)
127 2qz4_A Paraplegin; AAA+, SPG7, 24.7 25 0.00086 25.9 1.2 32 53-84 218-249 (262)
128 1iy2_A ATP-dependent metallopr 24.6 69 0.0024 24.2 3.7 27 56-82 252-278 (278)
129 2lv7_A Calcium-binding protein 24.5 97 0.0033 20.1 4.1 51 35-97 28-78 (100)
130 2p2u_A HOST-nuclease inhibitor 24.4 34 0.0012 25.5 1.9 20 72-91 107-126 (171)
131 3dxs_X Copper-transporting ATP 24.2 38 0.0013 19.9 1.8 18 70-87 49-66 (74)
132 3pxi_A Negative regulator of g 23.1 1.3E+02 0.0043 26.6 5.6 37 36-84 5-41 (758)
133 1pva_A Parvalbumin; calcium bi 23.0 1.4E+02 0.0049 18.5 5.5 27 59-85 46-72 (110)
134 1qvr_A CLPB protein; coiled co 22.8 74 0.0025 28.7 4.1 35 36-82 5-39 (854)
135 2ktg_A Calmodulin, putative; e 22.7 1.2E+02 0.0042 17.9 4.1 26 62-87 21-46 (85)
136 1whz_A Hypothetical protein; a 22.6 47 0.0016 20.6 2.0 17 71-87 4-20 (70)
137 1jr3_D DNA polymerase III, del 22.2 67 0.0023 25.1 3.3 66 12-81 141-206 (343)
138 2joj_A Centrin protein; N-term 22.1 1.1E+02 0.0038 17.6 3.7 22 66-87 18-39 (77)
139 3fwb_A Cell division control p 22.0 1.7E+02 0.0058 19.0 8.4 37 60-96 101-137 (161)
140 1bu3_A Calcium-binding protein 21.9 1.3E+02 0.0046 18.6 4.3 79 11-97 5-87 (109)
141 1pk1_B Sex COMB on midleg CG94 21.8 58 0.002 21.6 2.4 24 71-94 16-41 (89)
142 1u5t_A Appears to BE functiona 21.7 1.2E+02 0.0042 23.8 4.7 37 49-85 88-142 (233)
143 1j7q_A CAVP, calcium vector pr 21.4 1.2E+02 0.0042 18.0 3.9 23 65-87 24-46 (86)
144 2kz2_A Calmodulin, CAM; TR2C, 21.4 1.6E+02 0.0054 18.4 5.1 26 62-87 36-61 (94)
145 1exr_A Calmodulin; high resolu 21.3 1.8E+02 0.0061 19.0 6.7 29 59-87 87-115 (148)
146 1iqp_A RFCS; clamp loader, ext 21.2 1.8E+02 0.0062 21.7 5.5 66 12-83 168-233 (327)
147 1r6b_X CLPA protein; AAA+, N-t 21.1 79 0.0027 27.8 3.8 25 58-82 11-35 (758)
148 2xmm_A SSR2857 protein, ATX1; 20.0 63 0.0022 17.6 2.1 16 72-87 47-62 (64)
149 2ovk_C Myosin catalytic light 20.0 2E+02 0.0067 18.9 5.6 29 59-87 89-117 (159)
No 1
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=2.5e-31 Score=198.20 Aligned_cols=103 Identities=27% Similarity=0.531 Sum_probs=87.4
Q ss_pred hhhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcc
Q 032293 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 8 ~Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
++++.||+|+|.||||.++|+ +.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.
T Consensus 5 ~~d~~LP~A~I~rImK~~~pd-----~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 5 IEDLNLPNAVIGRLIKEALPE-----SASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp ------CCSHHHHHHHHHSCT-----TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred cccccCCHHHHHHHHHHhCcc-----cceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 468899999999999999985 689999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhccccCccCCH
Q 032293 88 EFVDPLRDSLDEFRQKNAGKRAGTSKSK 115 (143)
Q Consensus 88 ~yi~~l~~~l~~~ke~~~~Kk~~~~~~~ 115 (143)
+|+++|+.+|..|++.++.|+.....++
T Consensus 80 ~fl~~lk~~l~~yr~~~~~kk~~~~~~~ 107 (128)
T 2byk_B 80 SFVPSLTQDLEVYRKVVKEKKESKASKK 107 (128)
T ss_dssp TTHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 9999999999999999999988744333
No 2
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=6.6e-31 Score=205.63 Aligned_cols=98 Identities=26% Similarity=0.544 Sum_probs=92.4
Q ss_pred chhhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCc
Q 032293 7 VPEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (143)
Q Consensus 7 ~~Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF 86 (143)
..+++.||+|+|.||||++|| +++||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.|||
T Consensus 10 ~~eD~~LP~A~V~RImK~alp------~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF 83 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP------NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGF 83 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST------TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred chhhhhcCHHHHHHHHHHhCC------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcCh
Confidence 458899999999999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhccccC
Q 032293 87 TEFVDPLRDSLDEFRQKNAGKRAG 110 (143)
Q Consensus 87 ~~yi~~l~~~l~~~ke~~~~Kk~~ 110 (143)
++|+++|+.+|+.||+.++.|+..
T Consensus 84 ~~fv~~lk~~L~~yre~~~~kkr~ 107 (179)
T 1jfi_B 84 GSYISEVKEVLQECKTVALKRRKA 107 (179)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999887654
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=9.5e-29 Score=174.29 Aligned_cols=92 Identities=32% Similarity=0.538 Sum_probs=84.7
Q ss_pred cchhhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 6 VVPEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 6 ~~~Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
+..+++.||+++|.||||+.+|+ +.+||+||+.+|++||++||+||+..|+.+|.+++||||+++||+.||+.||
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~-----~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQ-----TGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 76 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCT-----TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred CCcccccCChhHHHHHHHHhCCc-----cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 34578899999999999999984 6899999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHH
Q 032293 86 FTEFVDPLRDSLDEFRQ 102 (143)
Q Consensus 86 F~~yi~~l~~~l~~~ke 102 (143)
|.+|+++++.+|+.||+
T Consensus 77 F~~~i~~~~~~l~~~r~ 93 (93)
T 1n1j_A 77 FDSYVEPLKLYLQKFRE 93 (93)
T ss_dssp CGGGHHHHHHHHHHHHC
T ss_pred cHhhHHHHHHHHHHHhC
Confidence 99999999999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.87 E-value=2.6e-22 Score=136.87 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=64.4
Q ss_pred ccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 11 ~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
..||+|+|.||||+++| +++||+||+.+|++|+++||+||+++|+++|.+++||||+++||+.|++.+
T Consensus 3 ~~LP~A~V~rI~K~~~p------~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP------HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT------TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC------CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 47999999999999998 589999999999999999999999999999999999999999999999764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.83 E-value=9.2e-21 Score=145.15 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=71.5
Q ss_pred ccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccch
Q 032293 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFV 90 (143)
Q Consensus 11 ~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~yi 90 (143)
.+||+++|.||||+.|| ..+||+||.++|++|+++|+.||+++|+++|.++|||||+++||++||..|||++|+
T Consensus 3 ~~LP~a~V~Riik~~lg------~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~ 76 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIG------ERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVE 76 (154)
T ss_dssp -CCCHHHHHHHHHTTST------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTST
T ss_pred ccCCccHHHHHHHhcCC------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCC
Confidence 37999999999999997 589999999999999999999999999999999999999999999999999999876
Q ss_pred H
Q 032293 91 D 91 (143)
Q Consensus 91 ~ 91 (143)
+
T Consensus 77 d 77 (154)
T 1f1e_A 77 D 77 (154)
T ss_dssp T
T ss_pred c
Confidence 4
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.79 E-value=2.7e-19 Score=118.90 Aligned_cols=66 Identities=27% Similarity=0.342 Sum_probs=63.5
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
.||+++|.||||+. + +.+||+||+.+|++|++.||.+|+..|+.+|.+++|+||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~-~------~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-G------AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT-T------CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC-C------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 69999999999999 4 689999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.76 E-value=2.7e-18 Score=124.99 Aligned_cols=91 Identities=12% Similarity=0.218 Sum_probs=79.8
Q ss_pred hhhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcc
Q 032293 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 8 ~Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
.++..||+++|.|||+... ..+||+++..+|.+|+..|+..|+..|..+|.++|||||+++||+.||+..||.
T Consensus 3 ~~d~~lP~a~I~Ri~r~~g-------~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHYV-------KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -------CHHHHHHHHHHH-------CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCCCHHHHHHHHHHCC-------CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 3678999999999999993 689999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHH--HHHhh
Q 032293 88 EFVDPLRDSLDEF--RQKNA 105 (143)
Q Consensus 88 ~yi~~l~~~l~~~--ke~~~ 105 (143)
.|+.++..+++.| ++..+
T Consensus 76 ~~~~~l~~l~~~~lp~E~~~ 95 (111)
T 3b0c_T 76 TDKMPLHVLVERHLPLEYRK 95 (111)
T ss_dssp BTTBCHHHHHHHHSCHHHHH
T ss_pred cccccHHHHHHHhCcHHHHH
Confidence 9999999999999 66443
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.74 E-value=8.5e-19 Score=132.32 Aligned_cols=96 Identities=15% Similarity=0.273 Sum_probs=61.4
Q ss_pred hhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHh-HhcCCCCCChHHHHHHHhh---c
Q 032293 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDIC-KESKRQTINAEDVLKAIEE---I 84 (143)
Q Consensus 9 Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a-~~~kRKTIs~eDVl~AL~~---l 84 (143)
....||.+.|.||||.. |+ ..+||++|..+|++|++.||.||+..|+.+| ...+||||++.||..|+.. +
T Consensus 16 ~~~~LPlaRIKrIMK~d-pd-----v~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~ 89 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSS-MD-----TGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNL 89 (140)
T ss_dssp -------------CCSS-SS-----CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTT
T ss_pred cCCCCCHHHHHHHHhcC-cc-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchh
Confidence 45689999999999998 53 5699999999999999999999999999999 9999999999999999985 4
Q ss_pred CcccchHHHHHHHHHHHHHhhccccC
Q 032293 85 DFTEFVDPLRDSLDEFRQKNAGKRAG 110 (143)
Q Consensus 85 gF~~yi~~l~~~l~~~ke~~~~Kk~~ 110 (143)
+|..++-|.+.++..|++..+.++..
T Consensus 90 dFL~divP~ki~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 90 EFLLQIVPQKIRVHQFQEMLRLNRSA 115 (140)
T ss_dssp GGGTTTSCSCC---------------
T ss_pred hhHhccccchhhHHHHHHHHHhcccc
Confidence 55556668899999999988765554
No 9
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.68 E-value=5.1e-17 Score=119.30 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=67.8
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccc
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~y 89 (143)
...||.++|.||||.. |+ ..+||++|..+|++|++.||.+|+..|+..|..++||||+++||..|++..+..+|
T Consensus 39 ~~~lPvaRIkrImK~d-~~-----~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dF 112 (119)
T 4g92_C 39 IHQLPLARIKKVMKAD-PE-----VKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDF 112 (119)
T ss_dssp CCSSCHHHHHHHHHTS-TT-----CCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred cCCCCHHHHHHHHhhC-Cc-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhH
Confidence 4469999999999976 53 67999999999999999999999999999999999999999999999997765555
Q ss_pred h
Q 032293 90 V 90 (143)
Q Consensus 90 i 90 (143)
+
T Consensus 113 L 113 (119)
T 4g92_C 113 L 113 (119)
T ss_dssp G
T ss_pred H
Confidence 4
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.66 E-value=1.9e-16 Score=112.37 Aligned_cols=75 Identities=27% Similarity=0.410 Sum_probs=68.4
Q ss_pred ccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccch
Q 032293 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFV 90 (143)
Q Consensus 11 ~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~yi 90 (143)
..||.+.|.||||.. |+ ..+||++|..+|++|++.||.+|+..|+..|.+++|+||+++||..|++..++.+|+
T Consensus 18 ~~lP~arIkrImK~~-~~-----~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 18 QELPLARIKKIMKLD-ED-----VKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp --CCHHHHHHHHTTS-TT-----CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CcCCHHHHHHHHccC-cc-----ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 479999999999998 52 468999999999999999999999999999999999999999999999998888776
Q ss_pred H
Q 032293 91 D 91 (143)
Q Consensus 91 ~ 91 (143)
.
T Consensus 92 ~ 92 (97)
T 1n1j_B 92 I 92 (97)
T ss_dssp T
T ss_pred H
Confidence 4
No 11
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.65 E-value=2.9e-16 Score=120.16 Aligned_cols=70 Identities=26% Similarity=0.240 Sum_probs=66.0
Q ss_pred chhhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 7 VPEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 7 ~~Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
..+++.||+++|.||||+. + ..+||.||...|++|+++|+.+|+..|++.|.++|||||+++||++||+.
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g------~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-G------IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-T------CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-C------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3567799999999999999 3 68999999999999999999999999999999999999999999999985
No 12
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.60 E-value=2.2e-15 Score=104.35 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=67.5
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccc
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~y 89 (143)
.||+++|.||++... ..+||.|+...++++++.|+..|+..|..+|.+++||||+++||..||+.+||.-|
T Consensus 10 ~ip~~~I~Riar~~G-------v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 10 GITKPAIRRLARRGG-------VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp SSCHHHHHHHHHHTT-------CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred CCCHHHHHHHHHHcC-------chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 699999999999884 57999999999999999999999999999999999999999999999999998766
No 13
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.58 E-value=4.5e-15 Score=99.20 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=61.2
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
.||+++|.||+|+. |..+||+++..+|++++..|+..|+..|+..|.++|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~-------g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-------GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-------TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-------CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999986 26899999999999999999999999999999999999999999999986
No 14
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.58 E-value=3.9e-15 Score=106.79 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=67.6
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccc
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~y 89 (143)
.||+++|.||++... ..+||.|+...|++|++.|+..|+..|..+|.+++||||+++||..||+.+||.-|
T Consensus 28 ~ip~~~I~Rlar~~G-------v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 28 GITKPAIRRLARRGG-------VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp GSCHHHHHHHHHHTT-------CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHHcC-------chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 599999999999984 47999999999999999999999999999999999999999999999999998766
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.52 E-value=2.8e-14 Score=102.19 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=67.2
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccc
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~y 89 (143)
.||+++|.||++... ..+||.++...|+.+++.|+..|+..|..+|.+++|+||+++||..||+.+||.-|
T Consensus 29 gip~~~I~Rlar~~G-------~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 29 GITKPAIRRLARRGG-------VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp GSCHHHHHHHHHHTT-------CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHcC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 499999999999984 46999999999999999999999999999999999999999999999999998765
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.50 E-value=3.4e-14 Score=101.77 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=63.8
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccc
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~y 89 (143)
.||+++|.||++... ..+||.++...|+.+++.|+..|+..|..+|.+++|+||+++||..||+.+||.-|
T Consensus 29 gip~~~I~Rlar~~G-------~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 29 GITKPAIRRLARRGG-------VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp -CCHHHHHHHHHHTT-------CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHcC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 499999999999984 46999999999999999999999999999999999999999999999999998755
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.43 E-value=1.7e-13 Score=97.42 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=59.0
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccc
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~y 89 (143)
...||.+.|.||||.. |+ ..+||.+|..+|.++++.|+.+|+..|+..|...+|+||++.||..|++.-+..+|
T Consensus 9 ~~~fPvaRIkrimK~~-~~-----~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-EE-----IGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp -CCCCHHHHHHHHTTS-TT-----CCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred CCCCChHHHHHHHHcC-cc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 3579999999999986 32 36999999999999999999999999999999999999999999999997766666
Q ss_pred hHH
Q 032293 90 VDP 92 (143)
Q Consensus 90 i~~ 92 (143)
+..
T Consensus 83 L~d 85 (98)
T 1jfi_A 83 NKA 85 (98)
T ss_dssp ---
T ss_pred HHh
Confidence 543
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.21 E-value=5.4e-11 Score=81.53 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=66.8
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
++.||++++.||+++...+.. ++.+++.+|..+||++++.|+..|...||..|.+.||+||.+.||.-|..--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~--~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTC--SSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcC--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 367999999999999977543 46899999999999999999999999999999999999999999999986554
No 19
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=80.79 Aligned_cols=75 Identities=23% Similarity=0.173 Sum_probs=65.7
Q ss_pred ccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 11 ~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
+.||++++.||+++...+..++.+.+++.+|..+||++++.|+..|...||..|.+.||+||.+.||.-|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 468999999999999743222236899999999999999999999999999999999999999999999986544
No 20
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.03 E-value=6.5e-10 Score=79.52 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=62.1
Q ss_pred hhhccCchhHHHHHHhccccCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 8 PEAEELPKTIVRRVVKDKLHNCSPD-TDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 8 ~Ed~~LP~a~V~RI~K~~Lp~~~~~-~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
+-++.||++.+.||+++...+..++ .+.+++.+|..+||++++.|+..|...||..|.+.||+||.+.||-.|..
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 3567899999999999998654431 26899999999999999999999999999999999999999999998863
No 21
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.02 E-value=7.8e-10 Score=84.57 Aligned_cols=77 Identities=22% Similarity=0.166 Sum_probs=67.7
Q ss_pred hhhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 8 ~Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
+.++.||++.+.|||+++..+..++.+.+|+.+|+.+||++++.|+..|...||.+|.+.+|+||.+.||..|+.--
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 45678999999999999986554334689999999999999999999999999999999999999999999987643
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.96 E-value=7.9e-10 Score=83.32 Aligned_cols=79 Identities=22% Similarity=0.171 Sum_probs=67.4
Q ss_pred hhhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCc
Q 032293 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (143)
Q Consensus 8 ~Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF 86 (143)
+.++.||++.+.|||+++..+..++.+.+++.+|+.+||++++.|+..|...||.+|.+.+|+||.+.||..|..--|.
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 4568899999999999997432222368999999999999999999999999999999999999999999999876553
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.92 E-value=1.8e-09 Score=81.07 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=67.2
Q ss_pred hhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 9 Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
.++.||++.+.|||++...+.. ++.+|+.+|..+||++++.|+..|...||.+|.+.+|+||.+.||..|..--|
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~--~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHC--TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred hhhhhccchHHHHHHHHHHHhh--hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 4678999999999999965332 36899999999999999999999999999999999999999999999986544
No 24
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.90 E-value=4.5e-09 Score=76.63 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=67.9
Q ss_pred HHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccchHHHHHH
Q 032293 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (143)
Q Consensus 17 ~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~yi~~l~~~ 96 (143)
+|.||+++.... .++.||+++..+|.+.+..|+..|+..+..+|.++|||||+++||..+++.. +.|..+
T Consensus 32 ~V~rIvke~gae----r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~ 101 (113)
T 4dra_A 32 TVGCLCEEVALD----KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKY 101 (113)
T ss_dssp HHHHHHHHHHHH----HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHH
T ss_pred HHHHHHHHHHHH----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHH
Confidence 789999999752 3578999999999999999999999999999999999999999999999873 566666
Q ss_pred HHHHHHHh
Q 032293 97 LDEFRQKN 104 (143)
Q Consensus 97 l~~~ke~~ 104 (143)
|..|.+..
T Consensus 102 l~~~~~el 109 (113)
T 4dra_A 102 ITDKSEEI 109 (113)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.89 E-value=8.4e-09 Score=69.41 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=61.3
Q ss_pred ccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 11 ~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
..||.++|.+|+++.. --++|.|+...|.+-++..+..|+.+|..++.+.||+|++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~G-------i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG-------VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT-------CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4799999999999983 4599999999999999999999999999999999999999999999985
No 26
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.84 E-value=6.2e-09 Score=78.39 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=66.9
Q ss_pred HHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccchHHHHHH
Q 032293 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (143)
Q Consensus 17 ~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~yi~~l~~~ 96 (143)
+|.||+++.... .++.||.++..+|.+.+..|+..|+..+..+|.|+||+||+++||..+++.. +.|..+
T Consensus 24 ~VgkIvee~~~~----~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~ 93 (140)
T 3vh5_A 24 TTGALAQDVAED----KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKY 93 (140)
T ss_dssp HHHHHHHHHHHH----HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHH
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHH
Confidence 688999988652 3689999999999999999999999999999999999999999999999874 455666
Q ss_pred HHHHHHHh
Q 032293 97 LDEFRQKN 104 (143)
Q Consensus 97 l~~~ke~~ 104 (143)
|..|.+..
T Consensus 94 L~~~~~el 101 (140)
T 3vh5_A 94 ITQKSDEL 101 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666555
No 27
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.80 E-value=1.7e-08 Score=72.92 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=65.8
Q ss_pred HHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccchHHHHHH
Q 032293 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (143)
Q Consensus 17 ~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~yi~~l~~~ 96 (143)
+|.||+++.... .+.++|+++..+|.+.+..|+.-|+..|..+|.++||+||+++||..|++.. +.|...
T Consensus 24 ~V~rI~~~~g~~----~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~ 93 (107)
T 3b0b_B 24 TTGCLCQDVAED----KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKY 93 (107)
T ss_dssp HHHHHHHHHHHH----HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHH
T ss_pred HHHHHHHHHhhh----cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHH
Confidence 689999988631 2479999999999999999999999999999999999999999999999874 445555
Q ss_pred HHHHHHHh
Q 032293 97 LDEFRQKN 104 (143)
Q Consensus 97 l~~~ke~~ 104 (143)
|..|.+..
T Consensus 94 l~~~~~el 101 (107)
T 3b0b_B 94 ITQKSDEL 101 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 28
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.8e-08 Score=69.75 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=58.4
Q ss_pred HHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 17 ~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
+|.+|+.+.++. +++.||+++..+|.+.+..|+..|+..+..+|.++||+||+++||.-+++.
T Consensus 17 ~V~ki~~e~~~~----~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSS----EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCS----SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHh----cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 688999999863 358999999999999999999999999999999999999999999999876
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.56 E-value=3e-07 Score=61.44 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=56.5
Q ss_pred hHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 16 a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
..|.||+|+.. ..+++.++...|.+.+..++.-|...|..+|.+.||+||+++||..|++.
T Consensus 5 ~~i~~iLk~~G-------~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELN-------VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTT-------CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 36899999973 56999999999999999999999999999999999999999999999874
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.53 E-value=2.8e-07 Score=67.82 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=62.8
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 21 gL~fPV~ri~R~Lk~~~~------a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNY------AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp TCSSCHHHHHHHHHHTTS------CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeeccHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 468999999999999732 46999999999999999999999999999999999999999999999973
No 31
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.50 E-value=3.5e-07 Score=67.85 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=62.4
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
.+.||.+.|.|+|++.-. ..+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+.
T Consensus 23 gLqfPV~rI~R~Lk~~~~------a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNY------AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHTTS------SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 468999999999999732 4699999999999999999999999999999999999999999999998
No 32
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.50 E-value=2.9e-07 Score=68.45 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=62.9
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 23 gLqfPV~rI~R~Lk~~~~------a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNY------AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp TCSSCHHHHHHHHHTTCS------CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeecCHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 568999999999999732 46999999999999999999999999999999999999999999999983
No 33
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.49 E-value=3.7e-07 Score=66.94 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=62.7
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|+..
T Consensus 20 gLqfPV~ri~R~Lk~~~~------a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHP------KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp TCSSCHHHHHHHHHHHSS------SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CccCChHHHHHHHHcCcc------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 468999999999999842 46999999999999999999999999999999999999999999999973
No 34
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.2e-07 Score=67.55 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccc
Q 032293 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (143)
Q Consensus 36 ~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~y 89 (143)
+||.++-+.+......|+.-|...|...|.+.+||||+++||.-||+..|-.-|
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 444444444444455555555568888999999999999999999999885433
No 35
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.42 E-value=7.3e-07 Score=66.04 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=62.6
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
.+.||.+.|.|+||+.-. ...+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 25 gLqfPV~ri~R~Lk~~~~-----a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTT-----SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSC-----SSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHccc-----chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 468999999999999842 124999999999999999999999999999999999999999999999874
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.41 E-value=6.9e-07 Score=67.85 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=62.8
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|+..|...|...|...+|++|+++||..|+..
T Consensus 42 gLqFPVgrI~R~LK~~~~------a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNY------SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp TCSSCHHHHHHHHHHTTS------CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcccc------ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 468999999999999742 46999999999999999999999999999999999999999999999983
No 37
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.5e-06 Score=70.29 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=66.6
Q ss_pred hccCchhHHHHHHhccccCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPD-TDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~-~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
.+.+|+.+..|++++...+..++ .+.+++..|..+||+|++.|+.-|...+|..|.+.+|.||.+.|+..|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 46799999999999998765431 26899999999999999999999999999999999999999999999987555
No 38
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.25 E-value=2.6e-06 Score=62.85 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=58.7
Q ss_pred hHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 16 a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
..|+|++|++-| +..||.+|...|......+..-|+.+|..+|..++|+||+..||..|++-|
T Consensus 37 ~YIyKVLKQVhp------d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP------DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 469999999987 578999999999999999999999999999999999999999999999754
No 39
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.22 E-value=3.2e-06 Score=62.56 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=58.8
Q ss_pred hHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 16 a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
..|+|++|++-| +..||.+|...|......+..-|+.+|..+|..++|+||+..||..|++-|
T Consensus 40 ~YIyKVLKQVhp------d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 40 IYVYKVLKQVHP------DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHCT------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 469999999987 578999999999999999999999999999999999999999999999754
No 40
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.17 E-value=4.5e-06 Score=65.22 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=62.6
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
.+.||.+.|.|+||+.-. ...+|+.+|...|..+.+.|+..|...|...|.+.+|++|+|+||..|+..
T Consensus 103 gl~fPv~ri~R~lk~~~~-----a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHAT-----GRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SCCSCHHHHHHHHHHTTC-----SSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHhcCc-----cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 568999999999999731 125999999999999999999999999999999999999999999999873
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.1e-06 Score=69.43 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=50.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 33 TDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 33 ~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
|.-+||.++.+.+......|+.-|...|..+|.+++||||+++||.-||+.+|
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 46699999999999999999999999999999999999999999999999765
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.98 E-value=4.9e-05 Score=52.59 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=62.9
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
+..+|..+|.||++....+ ...+|++||..++++....||.-....|...+...+-.+|..+|+-+.+-.|
T Consensus 10 ~~~i~~~li~ril~~~F~~----~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKD----DKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcC----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 4579999999999988853 3799999999999999999999999999999998888999999998876543
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.93 E-value=3.1e-05 Score=60.44 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=58.1
Q ss_pred hHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 16 a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
..|+|++|++-| +..||.+|...|......+...|+.+|...+..++|+||++.||..|++-
T Consensus 7 ~yi~kvLkqv~p------~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHP------DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCS------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCC------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 469999999987 57899999999999999999999999999999999999999999999974
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.88 E-value=6.3e-05 Score=51.66 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=62.8
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
...||..+|.||++....+ ...+|++||..++++....||.-....|...+...+-..|..+|+-+.+-.
T Consensus 6 ~~~~~~~lI~ril~~~f~~----~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRD----GRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcc----CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 5579999999999998863 368999999999999999999999999999998889999999999887654
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.74 E-value=0.00016 Score=49.07 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=61.6
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
-|++..+.-+|++.=| ...+..++-++|.+.|..||.-++..|-..|++.+-.||...||.-.|++
T Consensus 5 vl~k~~L~~Lv~~idp------~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP------NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999965 68999999999999999999999999999999999999999999998874
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.70 E-value=0.00022 Score=49.68 Aligned_cols=68 Identities=16% Similarity=0.407 Sum_probs=60.8
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC-CCCCChHHHHHHHhhcCc
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESK-RQTINAEDVLKAIEEIDF 86 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~k-RKTIs~eDVl~AL~~lgF 86 (143)
.||++.|.|||...+ +..++.+...+|.=.+.+||..|...|.+++...+ ...|.|.||-.|...|.-
T Consensus 16 ~f~k~~vKrl~~~~~-------~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~~ 84 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT-------GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKS 84 (89)
T ss_dssp CCCHHHHHHHHHHHH-------SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc-------CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 799999999999998 46799999999999999999999999999997654 458999999999887643
No 47
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00095 Score=48.93 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=66.4
Q ss_pred cCchhHHHHHHhccccCCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC---CCCChHHHHHHHhhcCcc
Q 032293 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKR---QTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~-~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kR---KTIs~eDVl~AL~~lgF~ 87 (143)
.+|+.+..|++++...+..+ +.+.+++..|..+||++++.|+..|.-.+|-.|.+.-| +-|+.+ +...+.. -+.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~r~-vl~ 78 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEVRA-VLK 78 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHHHH-HHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHHHH-HHH
Confidence 37899999999987654332 23689999999999999999999999999998887633 567764 4444422 133
Q ss_pred cchHHHHHHHHHHHHHhhccc
Q 032293 88 EFVDPLRDSLDEFRQKNAGKR 108 (143)
Q Consensus 88 ~yi~~l~~~l~~~ke~~~~Kk 108 (143)
.|+..+-...-.|-+..++|.
T Consensus 79 ~~l~~i~rdav~yaehA~RKT 99 (121)
T 2ly8_A 79 SFLESVIRDSVTYTEHAKRKT 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCc
Confidence 455555444455555554443
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0058 Score=42.46 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=43.0
Q ss_pred CchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 032293 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKE 66 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~ 66 (143)
||+.+|.||+...... .+.+|++||..++++...+||.--...|++-...
T Consensus 2 ip~~llaRIL~~~F~~----~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGG----NDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCS----SCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCC----CCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999977753 4799999999999999999999888888765443
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.73 E-value=0.76 Score=36.51 Aligned_cols=67 Identities=12% Similarity=0.281 Sum_probs=49.2
Q ss_pred CchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHH----HHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR----IFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~----~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
++...+..|++..+.. .+..++.++...|.+.+. -.+..+...|...|...++.+|+.+||..|+..
T Consensus 259 ~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4455666666655542 146799999998888775 245555666777787889999999999999986
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=90.13 E-value=0.99 Score=42.52 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=52.5
Q ss_pred hccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 10 d~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
.+.||.+.|.|++|... .-+|+..|...+.-..+-...-|.-.|-..|...+++.|++.||..|+..
T Consensus 102 ~l~~pv~~~~~~l~~~~-------~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVL-------GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCSSCHHHHHHHHHHHH-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhhccc-------ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 45799999999996665 35999999888876555555555556667777888999999999999863
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.29 E-value=2.1 Score=35.91 Aligned_cols=62 Identities=24% Similarity=0.247 Sum_probs=44.1
Q ss_pred cccccHHHHHHHHHHH-H---HHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc-CcccchHHHHH
Q 032293 34 DISVHKDALLAFCESA-R---IFIHYLSATANDICKESKRQTINAEDVLKAIEEI-DFTEFVDPLRD 95 (143)
Q Consensus 34 ~~~IskdA~~al~~~a-~---~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l-gF~~yi~~l~~ 95 (143)
++.++.++...+.+.+ . -....|...|..+|..+++.+|+.+||..|+.-+ +...-+.-|+.
T Consensus 383 ~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~~~~ 449 (456)
T 2c9o_A 383 GINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILAD 449 (456)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHHHHHHH
Confidence 3568889888887766 2 3456666778888888999999999999998653 44333333333
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.08 E-value=3.4 Score=32.38 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=49.7
Q ss_pred hhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHH------HHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcc
Q 032293 15 KTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR------IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 15 ~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~------~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
..-+..|++..+.... ....++.++...+.+.+. -++..+...|..+|...++.+|+.+||..|+..+..+
T Consensus 203 ~~~~~~il~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 203 APQLRDILETRAEEAF--NPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp HHHHHHHHHHHHHHHB--CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 4556666665542100 135788889888888776 4555666777788888888999999999999876433
No 53
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=77.80 E-value=8.2 Score=27.18 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=41.0
Q ss_pred CchhHHHHHHhccccCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 13 LPKTIVRRVVKDKLHNCS-PDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~-~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
+....|.+.+...+...+ +++...+|..+..+|.+ |...|...+...|+.+|++.||=.-+
T Consensus 57 vd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 57 FTEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCHHHHHHHHHHHHCCCSCCCSCCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 344444444444443221 12356789999888865 66778888999999999999986543
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.66 E-value=8.6 Score=29.91 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=50.6
Q ss_pred CchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHH------HHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCc
Q 032293 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR------IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~------~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF 86 (143)
|+..-+..|+...+.... ....++.++...+.+.+. -++..+...|...|...++.+|+.+||..|+..+..
T Consensus 197 l~~~~~~~il~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAF--KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp CCHHHHHHHHHHHHHHHB--CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 444556666665432100 135688888888877665 234446667778888888899999999999987754
Q ss_pred ccch
Q 032293 87 TEFV 90 (143)
Q Consensus 87 ~~yi 90 (143)
+.|.
T Consensus 275 ~~~~ 278 (386)
T 2qby_A 275 DRVR 278 (386)
T ss_dssp HHHH
T ss_pred chHH
Confidence 4433
No 55
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=77.23 E-value=20 Score=28.06 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=52.0
Q ss_pred CchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHH------------HHHHHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 032293 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESA------------RIFIHYLSATANDICKESKRQTINAEDVLKA 80 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a------------~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~A 80 (143)
|+..-+..+++..+.... ....++.++...+.+.+ --++..+...|...|...++.+|+.+||..|
T Consensus 193 l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~ 270 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKS 270 (389)
T ss_dssp CBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 344556666666553100 02368899988888877 2345556677777888888899999999999
Q ss_pred HhhcCcccchH
Q 032293 81 IEEIDFTEFVD 91 (143)
Q Consensus 81 L~~lgF~~yi~ 91 (143)
+..+....+..
T Consensus 271 ~~~~~~~~~~~ 281 (389)
T 1fnn_A 271 SKEVLFGISEE 281 (389)
T ss_dssp HHHHSCCCCHH
T ss_pred HHHHhhhhHHH
Confidence 98876554433
No 56
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=76.97 E-value=2.7 Score=26.73 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
|..|..+|...|...++..|+.+|+..||+.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 66677778888888889999999999999753
No 57
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=76.90 E-value=10 Score=26.68 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=41.5
Q ss_pred cCchhHHHHHHhccccCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 12 ELPKTIVRRVVKDKLHNCS--PDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~--~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
.+....|.+.+...+...+ +++...+|..+..+|.+ |...|...+...|+.+|++.||=.-
T Consensus 55 gv~~~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 55 GISLDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp TCCHHHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 3444455555555443322 12346789999988865 6677888899999999999998543
No 58
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=70.73 E-value=5.5 Score=25.48 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 53 IHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
|..|..+|...|...++.+|+.+|+..||+..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 334556677788888889999999999998754
No 59
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=70.68 E-value=6.6 Score=27.67 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 36 ~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
++|..+..+|.. |...|...+...|+++|++.||=.
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~ 41 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIH 41 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHh
Confidence 578888888854 778899999999999999999854
No 60
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=68.71 E-value=14 Score=25.48 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 36 ~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
+++..+..+|. .|...|...+...|.++|++.||=.
T Consensus 5 ~~t~~~~~~l~------------~A~~~A~~~~~~~i~~eHlLlaLl~ 40 (148)
T 1khy_A 5 RLTNKFQLALA------------DAQSLALGHDNQFIEPLHLMSALLN 40 (148)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSSBCHHHHHHHHHT
T ss_pred hhhHHHHHHHH------------HHHHHHHHcCCCccCHHHHHHHHHc
Confidence 57778888775 4778899999999999999999843
No 61
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=68.58 E-value=6 Score=27.66 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 36 ~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
+++..+..+|. .|...|...+...|.++|++.||=.
T Consensus 5 ~~t~~~~~al~------------~A~~~A~~~~h~~i~~eHlLlaLl~ 40 (150)
T 2y1q_A 5 RFTERAQKVLA------------LAQEEALRLGHNNIGTEHILLGLVR 40 (150)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCCccHHHHHHHHHh
Confidence 57788888885 4778898889999999999999843
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.54 E-value=16 Score=28.34 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=40.1
Q ss_pred cccccHHHHHHHHHHHHH-------HHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 34 DISVHKDALLAFCESARI-------FIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 34 ~~~IskdA~~al~~~a~~-------FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
.+.++.++...|.+.+.- -+..+...|..+|.-.++.+|+.+||..|+..+-
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMAL 323 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHH
Confidence 468999999998876543 3445556677788888999999999999987543
No 63
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=67.46 E-value=6.6 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=21.9
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 58 ATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 58 ~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
.+|...|...++..|+.+|+..|++..-
T Consensus 42 ~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 42 QEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 3455566667889999999999998763
No 64
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=67.42 E-value=26 Score=30.39 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=39.4
Q ss_pred ccccHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 35 ISVHKDALLAFCESAR-------------IFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 35 ~~IskdA~~al~~~a~-------------~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
..++.+|...|.+.+. --+.-|...|..+|...++.+|+.+||..|+..
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4689999998888653 234455667888999999999999999999964
No 65
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=67.33 E-value=5.4 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHH
Q 032293 37 VHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAI 81 (143)
Q Consensus 37 IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL 81 (143)
+|..+..+|. .|...|...+...|+++|++.||
T Consensus 2 ~t~~~~~~l~------------~A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLN------------MAFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHH------------HHHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHH------------HHHHHHHHcCCCCcCHHHHHHHH
Confidence 4566666664 47778888899999999999998
No 66
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=66.98 E-value=18 Score=25.07 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=37.1
Q ss_pred CchhHHHHHHhccccCCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 13 LPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~-~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
+....+.+.+...+...+. .+...+|..+..+|.. |...|...+...|+.+|++.||=.
T Consensus 55 ~~~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 55 LGSEKIQKEVESLIGRAQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CCHHHHHHHHHHHHCCC-----CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCcccccCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 3344455555544432211 1345678877777754 667777778899999999999853
No 67
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=66.53 E-value=7.3 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCc
Q 032293 53 IHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (143)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF 86 (143)
|.-|..+|...|...++..|+.+|+..||+.+-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 4445556666777778899999999999997543
No 68
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=66.30 E-value=7 Score=27.57 Aligned_cols=38 Identities=16% Similarity=0.064 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 35 ISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 35 ~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
-+++..+..+|.. |...|...+...|.++|++.||=.-
T Consensus 6 ~~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 43 (145)
T 3fes_A 6 NRFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLRE 43 (145)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhC
Confidence 3688888888854 7778999999999999999998543
No 69
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=65.94 E-value=18 Score=24.81 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=30.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 34 DISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 34 ~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
...+|..+..+|.. |...|...+...|+.+|++.||=.
T Consensus 77 ~~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 77 DTQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp SCEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 45788888877754 677788888899999999999854
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.41 E-value=20 Score=28.04 Aligned_cols=71 Identities=13% Similarity=0.017 Sum_probs=45.8
Q ss_pred CchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHH------HHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCc
Q 032293 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR------IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~------~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF 86 (143)
|+..-+..|++..+...- ....++.++...+.+.+. -.+..+...|...|. +..+|+.+||..|+..+..
T Consensus 197 l~~~~~~~il~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGL--IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp CCHHHHHHHHHHHHHHTS--CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc--ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 445566677766442100 135688888888887765 123344455666665 6789999999999988753
Q ss_pred c
Q 032293 87 T 87 (143)
Q Consensus 87 ~ 87 (143)
+
T Consensus 273 ~ 273 (384)
T 2qby_B 273 E 273 (384)
T ss_dssp H
T ss_pred c
Confidence 3
No 71
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=64.31 E-value=26 Score=25.88 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=41.0
Q ss_pred cCchhHHHHHHhccccCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhH-hcCCCCCChHHHHHHHhh
Q 032293 12 ELPKTIVRRVVKDKLHNCS--PDTDISVHKDALLAFCESARIFIHYLSATANDICK-ESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~--~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~-~~kRKTIs~eDVl~AL~~ 83 (143)
.+....|.+-+. .+...+ .++...+|..+..+|++ |...|. .-|...|+.+|++.||=.
T Consensus 73 gvd~~~l~~~l~-~l~~~p~~~~~~~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 73 GLEVDQVKQAIA-STYSREQVLDTYPAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp TCCHHHHHHHHH-HHSCCCCCCSSCCEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHhcCCCCCCCCCCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 344445555444 443222 12356799999999865 778888 889999999999999843
No 72
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=61.80 E-value=8.8 Score=25.22 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=23.1
Q ss_pred HHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 55 YLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 55 ~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
.|..+|...|....+..|+.+|+..||+..
T Consensus 52 ~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 52 GVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344566667777778999999999999753
No 73
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=59.11 E-value=18 Score=27.00 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=50.8
Q ss_pred CchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHH
Q 032293 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDV 77 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDV 77 (143)
+|-+-+.|+++.+. +.-|-|+-..-+....+.=+.-|.--|...|..+||-+|.+.|+
T Consensus 3 m~~~~~e~lFR~aa-------~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAA-------GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHH-------CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHh-------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 57788999999997 46677888888888899999999999999999999999999875
No 74
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=57.16 E-value=9.4 Score=24.44 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=19.6
Q ss_pred CChHHHHHHHhhcCcccchHHHH
Q 032293 72 INAEDVLKAIEEIDFTEFVDPLR 94 (143)
Q Consensus 72 Is~eDVl~AL~~lgF~~yi~~l~ 94 (143)
=+++||..-|..+||+.|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 47899999999999999987653
No 75
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=55.82 E-value=36 Score=23.35 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=27.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 35 ISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 35 ~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
..+|..+..+|.. |...+...+...|+.+|++.||=
T Consensus 81 ~~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 81 VQPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp -CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cCcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 4677777776654 66677777889999999999986
No 76
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=55.71 E-value=12 Score=28.53 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=53.0
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHH
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDV 77 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDV 77 (143)
-+|-+-+.|+++.+. +.-|-|+-..-+....+.=+..|.--|...|..+||-+|.+.|+
T Consensus 26 vmg~~kferlFR~aa-------gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTEL-------DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHh-------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 678899999999998 47788888888999999999999999999999999999999885
No 77
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=54.73 E-value=21 Score=24.94 Aligned_cols=64 Identities=9% Similarity=0.153 Sum_probs=39.8
Q ss_pred CchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
++..-+..++...+.. .+..++.++...|.+.+.--+..+-......+... .+|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4455666666665531 13558888888777665544444444444444333 6999999999875
No 78
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=53.94 E-value=72 Score=24.62 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=35.1
Q ss_pred cccccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 34 DISVHKDALLAFCESARIF-----------------------IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 34 ~~~IskdA~~al~~~a~~F-----------------------I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
++.++.++...+.+.+... ...|...|...|.-.+|..|+++||..|+...
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4567888877776644321 22344556667777899999999999988753
No 79
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=53.21 E-value=21 Score=25.17 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=40.7
Q ss_pred CchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHH
Q 032293 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAI 81 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL 81 (143)
|+..-+..++...+.. .+..++.++...|.+.+.--..++-......+.. ++.+|+.+||-.++
T Consensus 185 l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~-~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTT-TTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cCceecHHHHHHHh
Confidence 4455666666665532 1357888888888777765555555444444333 34589999998876
No 80
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=52.33 E-value=12 Score=24.15 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.5
Q ss_pred CCChHHHHHHHhhcCcccchHHHH
Q 032293 71 TINAEDVLKAIEEIDFTEFVDPLR 94 (143)
Q Consensus 71 TIs~eDVl~AL~~lgF~~yi~~l~ 94 (143)
.-++++|..-|..+||+.|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987654
No 81
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=51.67 E-value=46 Score=26.29 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=38.7
Q ss_pred cccccHHHHHHHHHHHH---HHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCccc
Q 032293 34 DISVHKDALLAFCESAR---IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTE 88 (143)
Q Consensus 34 ~~~IskdA~~al~~~a~---~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~ 88 (143)
++.++.++...|.+.+. -.+.-+...+...|...++..|+.++|..||..++++.
T Consensus 197 ~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 197 DVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp TCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred CCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 35678888777765432 23344445666677777788999999999999887653
No 82
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=49.57 E-value=19 Score=27.21 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 52 FIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 52 FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
-|..|...|...|...++.+|+.+||..|++.+
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 455677778888888899999999999999764
No 83
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=47.94 E-value=18 Score=26.70 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 36 ~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
+++..+..+|. .|...|...+-..|.++|++.||=.-
T Consensus 24 kfT~~a~~aL~------------~A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALE------------QAASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHH------------HHHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHHc
Confidence 45666666664 47778888899999999999998543
No 84
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=45.50 E-value=47 Score=23.63 Aligned_cols=61 Identities=5% Similarity=0.024 Sum_probs=35.0
Q ss_pred hHHHHHHhccccCCCCCCcccccHHHHHHHHHHHH----HHHHHHHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR----IFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 16 a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~----~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
..+..++...+.. .+..++.++...|.+.+. ..++.|. .+...|..++ ++|+.+||..+|+
T Consensus 177 ~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 177 DEKLAALQRRAAM----RGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 4444555544421 135688888887776553 2333332 3333444344 5699999998875
No 85
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=42.40 E-value=32 Score=25.62 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 53 IHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
|..+...|...|...++.+|+.+||..|++.+-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 344555666777778889999999999998753
No 86
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=40.57 E-value=23 Score=23.61 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.1
Q ss_pred CCChHHHHHHHhhc-CcccchHHHH
Q 032293 71 TINAEDVLKAIEEI-DFTEFVDPLR 94 (143)
Q Consensus 71 TIs~eDVl~AL~~l-gF~~yi~~l~ 94 (143)
.-+.+||..-|..+ ||++|++...
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 46899999999999 9999887654
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=39.69 E-value=1.2e+02 Score=23.63 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=47.3
Q ss_pred CchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHH---------HHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR---------IFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 13 LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~---------~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
|+..-+..|+...+.... ....++.++...+.+.+. -++..+...|...+...++.+|+.+||..++..
T Consensus 215 l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 444556666654332000 023578888888877766 366777777778888888899999999988876
Q ss_pred cC
Q 032293 84 ID 85 (143)
Q Consensus 84 lg 85 (143)
+.
T Consensus 293 ~~ 294 (412)
T 1w5s_A 293 NE 294 (412)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 88
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=39.35 E-value=89 Score=26.08 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=42.5
Q ss_pred cCchhHHHHHHhccccCCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~-~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
.+....|.+.+...++..+. .+...+|..+..+|.. |...|..-+...|+.+|++.||=.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhc
Confidence 44455666666666643221 1246789998888865 6677778889999999999998543
No 89
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=38.55 E-value=13 Score=25.41 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred CCChHHHHHHHhhcCcccchHHH
Q 032293 71 TINAEDVLKAIEEIDFTEFVDPL 93 (143)
Q Consensus 71 TIs~eDVl~AL~~lgF~~yi~~l 93 (143)
.-+++||..-|+.+||.+|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 45899999999999999998664
No 90
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=37.39 E-value=12 Score=23.48 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=18.5
Q ss_pred CChHHHHHHHhhcCcccchHHH
Q 032293 72 INAEDVLKAIEEIDFTEFVDPL 93 (143)
Q Consensus 72 Is~eDVl~AL~~lgF~~yi~~l 93 (143)
=+++||..-|..+||+.|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999998887654
No 91
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.09 E-value=91 Score=27.56 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=43.2
Q ss_pred cCchhHHHHHHhccccCCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~-~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
.+....|.+-+...++..++ .+...+|..+..+|.. |...|..-+...|+.+|++.||=.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~I~~ehlLlall~~ 115 (758)
T 3pxi_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (758)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 44555666666666654321 1346789998888865 6677778889999999999998644
No 92
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=36.95 E-value=70 Score=24.33 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=46.2
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHH---HHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcc
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARI---FIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~---FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
.+|..-+..+++..+.. .+..++.++...|.+.+.- .+..+...+...|...+..+|+.+|+..++..++.+
T Consensus 167 ~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 167 YYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 34555666676666542 1467889998888876522 233333344444555567789999999999877643
No 93
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.56 E-value=35 Score=29.08 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 53 IHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
|..|..+|...|...++..|+.+|+..||+.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5556667777888889999999999999875
No 94
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=35.54 E-value=52 Score=20.36 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=29.1
Q ss_pred hhhccCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHH
Q 032293 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIF 52 (143)
Q Consensus 8 ~Ed~~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~F 52 (143)
.+...++.++|.|++...- +...||.+.+.-|.+++..+
T Consensus 7 A~~aGVS~sTVSrvLng~~------~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 7 ARLAGVSRTTASYVINGKA------KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHTSCHHHHHHHHHTCT------TTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHcCCC------CCCCCCHHHHHHHHHHHHHh
Confidence 3455789999999998642 12368999999998877654
No 95
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=35.54 E-value=1e+02 Score=21.85 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=19.1
Q ss_pred HHhHhcCCCCCChHHHHHHHhhcCccc
Q 032293 62 DICKESKRQTINAEDVLKAIEEIDFTE 88 (143)
Q Consensus 62 ~~a~~~kRKTIs~eDVl~AL~~lgF~~ 88 (143)
...-.++--+|+.+++..+|..+|+.-
T Consensus 64 ~~~D~d~~G~Is~~El~~~l~~~g~~~ 90 (197)
T 3pm8_A 64 IALDVDNSGTLSSQEILDGLKKIGYQK 90 (197)
T ss_dssp HHHCTTCSSEECHHHHHHHHHHHC---
T ss_pred HHHCCCCCCcCCHHHHHHHHHHhCCCC
Confidence 334456677899999999999988753
No 96
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=35.42 E-value=31 Score=22.10 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=39.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHH-HhHhcCCCCCChHHHHHHHhhcC
Q 032293 34 DISVHKDALLAFCESARIFIHYLSATAND-ICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 34 ~~~IskdA~~al~~~a~~FI~~lt~~A~~-~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
++.++.||...|.+ .=-||.--.....+ .|...|...||.+.+..|-..++
T Consensus 3 ~l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 47789999998887 33566555554444 89999999999999999977655
No 97
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.28 E-value=37 Score=29.19 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 52 FIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 52 FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
=|..|..+|...|...+|..|+.+|+..|++.
T Consensus 391 DI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 35566677878888889999999999999874
No 98
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.05 E-value=36 Score=28.98 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
|..|..+|...|...++..|+.+|+..||+..
T Consensus 391 i~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 391 LKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 55666777778888899999999999999754
No 99
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=33.24 E-value=59 Score=20.44 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=27.2
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHhhc---CcccchHHHHHHHH
Q 032293 59 TANDICKESKRQTINAEDVLKAIEEI---DFTEFVDPLRDSLD 98 (143)
Q Consensus 59 ~A~~~a~~~kRKTIs~eDVl~AL~~l---gF~~yi~~l~~~l~ 98 (143)
.+....-.++.-+|+.+++..+|..+ |..---..+...+.
T Consensus 45 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 87 (109)
T 5pal_A 45 EVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLA 87 (109)
T ss_dssp HHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44555566777899999999999988 65544444444443
No 100
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.83 E-value=40 Score=29.25 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
|.-|..+|...|...+|+.|+.+|+..||+..
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 55666777778888899999999999999753
No 101
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=32.33 E-value=64 Score=19.01 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=24.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 032293 35 ISVHKDALLAFCESARIFIHYLSATAND 62 (143)
Q Consensus 35 ~~IskdA~~al~~~a~~FI~~lt~~A~~ 62 (143)
..-..|+..+|-+....||..+...|.+
T Consensus 17 ~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 17 QNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999998875
No 102
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=32.20 E-value=76 Score=26.53 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 36 ~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
+++..+..+|. .|...|...+...|+++|++.||=.-+
T Consensus 5 ~ft~~a~~al~------------~A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLA------------LAQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 57888888885 467789999999999999999986543
No 103
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=31.69 E-value=91 Score=27.42 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=30.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 34 DISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 34 ~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
...+|..+..+|.+ |...|...+...|+.+|++.||=.-
T Consensus 77 ~~~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~~ 115 (758)
T 1r6b_X 77 DTQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (758)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTTC
T ss_pred CCCcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhcc
Confidence 45788888888865 5566666788899999999998543
No 104
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.58 E-value=47 Score=28.13 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 52 FIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 52 FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
=|..|..+|...|..++|..|+.+|+..||+.
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 35566677777888889999999999999875
No 105
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=30.37 E-value=54 Score=25.32 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=45.9
Q ss_pred chhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHH---HHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcc
Q 032293 14 PKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARI---FIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 14 P~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~---FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
+..-+..+++..+.. .+..++.++...|.+.+.- .+..+...+...|...+..+|+.+||-.++..++++
T Consensus 185 ~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 185 KDSELALILQKAALK----LNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CHHHHHHHHHHHHHH----TTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 344555555555432 1356888888888774322 233334445556777778899999999999987765
No 106
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=29.52 E-value=33 Score=21.89 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=37.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHH-HHhHhcCCCCCChHHHHHHHhhcC
Q 032293 34 DISVHKDALLAFCESARIFIHYLSATAN-DICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 34 ~~~IskdA~~al~~~a~~FI~~lt~~A~-~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
++.++.||...|.+ .=-||.--..... ..|...|...||.+.+..|-..+|
T Consensus 2 ~l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 53 (62)
T 2l09_A 2 NLRWTSEAKTKLKN-IPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEFG 53 (62)
T ss_dssp CCEECHHHHHHHHT-SCGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHHh
Confidence 36678888888877 3345554444444 489999999999999999876554
No 107
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=29.07 E-value=32 Score=19.91 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHhhcCcc
Q 032293 70 QTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 70 KTIs~eDVl~AL~~lgF~ 87 (143)
.+++.++|+.+++.+||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 467899999999999986
No 108
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.64 E-value=54 Score=25.21 Aligned_cols=69 Identities=9% Similarity=0.025 Sum_probs=40.3
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHH----HHHHHHHHHHHHHhHhcCC-CCCChHHHHHHHhhcC
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR----IFIHYLSATANDICKESKR-QTINAEDVLKAIEEID 85 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~----~FI~~lt~~A~~~a~~~kR-KTIs~eDVl~AL~~lg 85 (143)
.++...+..++...+.. .++.++.++...|.+.+. ..++.|-..+ ..+...++ .+|+.+||..++..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~-~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGDLRRGITLLQSAS-KGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTH-HHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCCccCccccHHHHHHHhCCCC
Confidence 34555566666655432 146788998888877643 3333333322 23333332 3899999999887543
No 109
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=28.63 E-value=2.2e+02 Score=22.62 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=42.4
Q ss_pred hhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHH----HHHHHHHHHHHHhHhc------------CCCCCChHHHH
Q 032293 15 KTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARI----FIHYLSATANDICKES------------KRQTINAEDVL 78 (143)
Q Consensus 15 ~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~----FI~~lt~~A~~~a~~~------------kRKTIs~eDVl 78 (143)
......|++..+.. ....++.+....|.+.+.- -|..|...|...+... ....|+.+|+.
T Consensus 284 ~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~ 359 (389)
T 3vfd_A 284 EETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFT 359 (389)
T ss_dssp HHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHH
Confidence 34455556555532 1356777777777665433 3445555555554443 45689999999
Q ss_pred HHHhhcCcc
Q 032293 79 KAIEEIDFT 87 (143)
Q Consensus 79 ~AL~~lgF~ 87 (143)
.||+.+.-.
T Consensus 360 ~al~~~~~s 368 (389)
T 3vfd_A 360 ESLKKIKRS 368 (389)
T ss_dssp HHHHHCCCS
T ss_pred HHHHHcCCC
Confidence 999876543
No 110
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=28.59 E-value=1.2e+02 Score=22.63 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHHHHH------------HHHHHHH----HHHHHhHhcCC-CCCChHHHHHHHhhcCc
Q 032293 35 ISVHKDALLAFCESARI------------FIHYLSA----TANDICKESKR-QTINAEDVLKAIEEIDF 86 (143)
Q Consensus 35 ~~IskdA~~al~~~a~~------------FI~~lt~----~A~~~a~~~kR-KTIs~eDVl~AL~~lgF 86 (143)
..++.++...|.+.+.- ....|-. .+...+...+. .+|+.+||..|+..+..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 57899999988887632 2222222 12223333333 26999999999987643
No 111
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=28.14 E-value=68 Score=24.81 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=38.2
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
.++..-+..+++..+.. .++.++.++...|.+.+.--+..+.......+.. +..+|+.+||..++...
T Consensus 177 ~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~-~~~~i~~~~v~~~~~~~ 244 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAMLGTL 244 (373)
T ss_dssp CCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH-TTTCBCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHhCCC
Confidence 34556666666655532 1467888888877776543333333333232222 24578888887765443
No 112
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=26.92 E-value=1.1e+02 Score=20.30 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHhhcCc
Q 032293 59 TANDICKESKRQTINAEDVLKAIEEIDF 86 (143)
Q Consensus 59 ~A~~~a~~~kRKTIs~eDVl~AL~~lgF 86 (143)
.+....-.++.-+|+.+++..+|..+|+
T Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 44 KGFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 3455555677778999999999998886
No 113
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=26.71 E-value=1.4e+02 Score=20.02 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=25.6
Q ss_pred hcCCCCCChHHHHHHHhhcCcccchHHHHHHHH
Q 032293 66 ESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLD 98 (143)
Q Consensus 66 ~~kRKTIs~eDVl~AL~~lgF~~yi~~l~~~l~ 98 (143)
..--|||.|.+|..||..-+|-.+.+++....-
T Consensus 19 R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~ 51 (85)
T 2ns0_A 19 RADSASICPSDVARAVAPDDWRPLMEPVREAAG 51 (85)
T ss_dssp SCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHH
T ss_pred hCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHH
Confidence 334499999999999977778888888776543
No 114
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=26.70 E-value=60 Score=24.06 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=19.8
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 56 LSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 56 lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
+...|...|...++.+|+.+|+..|++
T Consensus 228 ~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 228 LLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 334555566677788999999998863
No 115
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=26.53 E-value=89 Score=17.37 Aligned_cols=24 Identities=4% Similarity=0.045 Sum_probs=15.5
Q ss_pred hHhcCCCCCChHHHHHHHhhcCcc
Q 032293 64 CKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 64 a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
.-.++.-+|+.+++..+|..+|..
T Consensus 10 ~D~d~~G~i~~~el~~~l~~~~~~ 33 (67)
T 1tiz_A 10 FDKNKDGKLSLDEFREVALAFSPY 33 (67)
T ss_dssp HCTTSSSCEEHHHHHHHHHHTCTT
T ss_pred HCCCCCCcCcHHHHHHHHHHhCCC
Confidence 334555567777777777777654
No 116
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=26.47 E-value=43 Score=21.04 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.4
Q ss_pred CChHHHHHHHhhc--CcccchHHHH
Q 032293 72 INAEDVLKAIEEI--DFTEFVDPLR 94 (143)
Q Consensus 72 Is~eDVl~AL~~l--gF~~yi~~l~ 94 (143)
=|++||..-|+.+ ||+.|.+...
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F~ 30 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLFA 30 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4789999999997 8888877653
No 117
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=25.86 E-value=31 Score=21.59 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=12.7
Q ss_pred HHHHHHHhhcCccc
Q 032293 75 EDVLKAIEEIDFTE 88 (143)
Q Consensus 75 eDVl~AL~~lgF~~ 88 (143)
+|++.||-.|||..
T Consensus 18 ~ea~~AL~aLGY~~ 31 (62)
T 1ixs_A 18 EEAVMALAALGFKE 31 (62)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 68999999999985
No 118
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.71 E-value=2.1e+02 Score=23.87 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=45.4
Q ss_pred cCchhHHHHHHhccccCCCC---CCcccccHHHHHHHHHHHH----HHHHHHHHHHHHHhHhc--CCCCCChHHHHHHHh
Q 032293 12 ELPKTIVRRVVKDKLHNCSP---DTDISVHKDALLAFCESAR----IFIHYLSATANDICKES--KRQTINAEDVLKAIE 82 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~---~~~~~IskdA~~al~~~a~----~FI~~lt~~A~~~a~~~--kRKTIs~eDVl~AL~ 82 (143)
.+|..-+..|++..+..... ...+.|+.++...|.+.+. ..++.|- .|...|... ++.+|+.+||..++.
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHh
Confidence 35666677777766643110 0247899999999988653 2333332 233344322 567899999999998
Q ss_pred hcC
Q 032293 83 EID 85 (143)
Q Consensus 83 ~lg 85 (143)
...
T Consensus 243 ~~~ 245 (447)
T 3pvs_A 243 ERS 245 (447)
T ss_dssp CCC
T ss_pred hhh
Confidence 653
No 119
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=25.71 E-value=38 Score=22.33 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=18.9
Q ss_pred CCChHHHHHHHhhcCc--ccchHHH
Q 032293 71 TINAEDVLKAIEEIDF--TEFVDPL 93 (143)
Q Consensus 71 TIs~eDVl~AL~~lgF--~~yi~~l 93 (143)
.=+++||..-|+.+|| +.|++..
T Consensus 19 ~Wt~~dV~~WL~~~gl~~~~Y~~~F 43 (91)
T 1v85_A 19 KWTTEEVVLWLEQLGPWASLYRDRF 43 (91)
T ss_dssp GCCHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4589999999999999 7776544
No 120
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=25.56 E-value=41 Score=19.76 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=15.3
Q ss_pred CCChHHHHHHHhhcCcc
Q 032293 71 TINAEDVLKAIEEIDFT 87 (143)
Q Consensus 71 TIs~eDVl~AL~~lgF~ 87 (143)
++++++|+.+++.+||.
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 47899999999999996
No 121
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=25.43 E-value=1.2e+02 Score=22.56 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=39.5
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
.+|..-+..++...+.. .+..++.++...|.+.+.--+..+-......+.. ..+|+.+||..++...
T Consensus 160 ~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~ 226 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATA 226 (319)
T ss_dssp CCCHHHHHHHHHHHHHT----TCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCC
Confidence 34556666666665542 2467899998888766543333333333233322 3479999998876543
No 122
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=25.14 E-value=1.3e+02 Score=18.73 Aligned_cols=79 Identities=10% Similarity=-0.022 Sum_probs=42.2
Q ss_pred ccCchhHHHHHHhccccCCCCCCcccccH-HHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc---Cc
Q 032293 11 EELPKTIVRRVVKDKLHNCSPDTDISVHK-DALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI---DF 86 (143)
Q Consensus 11 ~~LP~a~V~RI~K~~Lp~~~~~~~~~Isk-dA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l---gF 86 (143)
..++..-|.++++..= ++| .|+- |...++... ..- .--...+....-.++.-+|+.+++..+|..+ |.
T Consensus 5 ~~~~~~ei~~~~~~~D----~~g--~i~~~eF~~~~~~~-~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~ 76 (109)
T 3fs7_A 5 DILSAKDIESALSSCQ----AAD--SFNYKSFFSTVGLS-SKT-PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSAR 76 (109)
T ss_dssp GTSCHHHHHHHHHHTC----STT--CCCHHHHHHHHTCT-TCC-HHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSC
T ss_pred CcCCHHHHHHHHHhcC----CCC--cCcHHHHHHHHhcC-CCc-HHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccc
Confidence 3567778888888762 122 3432 222222110 000 0012334555556777899999999999998 54
Q ss_pred ccchHHHHHHH
Q 032293 87 TEFVDPLRDSL 97 (143)
Q Consensus 87 ~~yi~~l~~~l 97 (143)
.---..+...+
T Consensus 77 ~~~~~~~~~~~ 87 (109)
T 3fs7_A 77 VLTSAETKAFL 87 (109)
T ss_dssp CCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 43334444433
No 123
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.01 E-value=34 Score=23.08 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=17.7
Q ss_pred CCChHHHHHHHhhcCccc--chHHH
Q 032293 71 TINAEDVLKAIEEIDFTE--FVDPL 93 (143)
Q Consensus 71 TIs~eDVl~AL~~lgF~~--yi~~l 93 (143)
.=+++||..-|+.+||++ |++..
T Consensus 29 ~Ws~~~V~~WL~~lgl~~~~y~~~F 53 (103)
T 2e8o_A 29 TWGPEQVCSFLRRGGFEEPVLLKNI 53 (103)
T ss_dssp GCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hCCHHHHHHHHHHcCCChHHHHHHH
Confidence 356789999999999987 66543
No 124
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.91 E-value=78 Score=26.76 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 53 IHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
|..|..+|...|...+|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 5667777888888889999999999999864
No 125
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=24.89 E-value=80 Score=17.67 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=8.8
Q ss_pred hcCCCCCChHHHHHHHh
Q 032293 66 ESKRQTINAEDVLKAIE 82 (143)
Q Consensus 66 ~~kRKTIs~eDVl~AL~ 82 (143)
.++.-.|+.++.+..+.
T Consensus 47 ~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 47 ADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp TTCSSSCCHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 34444555555555544
No 126
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=24.83 E-value=1.3e+02 Score=22.63 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHHHHH----HHHHHHHHHHHhHhcC------------CCCCChHHHHHHHhhcCcccchHH
Q 032293 36 SVHKDALLAFCESARIF----IHYLSATANDICKESK------------RQTINAEDVLKAIEEIDFTEFVDP 92 (143)
Q Consensus 36 ~IskdA~~al~~~a~~F----I~~lt~~A~~~a~~~k------------RKTIs~eDVl~AL~~lgF~~yi~~ 92 (143)
.++.++...|.+.+.-| |..|...|...+.... ..+|+.+|+..|+..+.-+-.-..
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~ 280 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQS 280 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHH
Confidence 46677666666554432 2344444444444332 368999999999998765544333
No 127
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=24.75 E-value=25 Score=25.93 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
|..|...|...|...++.+|+.+|+..|++.+
T Consensus 218 l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 218 IANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 44455556666666778889999998888764
No 128
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=24.57 E-value=69 Score=24.24 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=19.9
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 56 LSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 56 lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
+...|...|...++.+|+.+||..|++
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 344555566677788999999998863
No 129
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=24.54 E-value=97 Score=20.12 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=35.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhcCcccchHHHHHHH
Q 032293 35 ISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSL 97 (143)
Q Consensus 35 ~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~lgF~~yi~~l~~~l 97 (143)
..++.+-..-|.+ |....-.++.-+|+.+++..+|..+|+.-=-..+...+
T Consensus 28 ~~l~~~~~~el~~------------~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 28 VDIPEDELEEIRE------------AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCGGGHHHHHH------------HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccCCHHHHHHHHH------------HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4566666655543 55666778888999999999999999753333344433
No 130
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=24.41 E-value=34 Score=25.47 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.4
Q ss_pred CChHHHHHHHhhcCcccchH
Q 032293 72 INAEDVLKAIEEIDFTEFVD 91 (143)
Q Consensus 72 Is~eDVl~AL~~lgF~~yi~ 91 (143)
.+.+.|+..|+.+||.+||.
T Consensus 107 ~~~~~vle~Lk~~gl~~~Ir 126 (171)
T 2p2u_A 107 ITKDMTLERLRQFGISEGIR 126 (171)
T ss_dssp CCHHHHHHHHHHTTCCTTCC
T ss_pred CCHHHHHHHHHHCCcHhhee
Confidence 35578999999999999986
No 131
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=24.23 E-value=38 Score=19.91 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.7
Q ss_pred CCCChHHHHHHHhhcCcc
Q 032293 70 QTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 70 KTIs~eDVl~AL~~lgF~ 87 (143)
.+++.++|..+++.+||.
T Consensus 49 ~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 49 NLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp TTCCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHCCCc
Confidence 357899999999999996
No 132
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.15 E-value=1.3e+02 Score=26.64 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc
Q 032293 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (143)
Q Consensus 36 ~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l 84 (143)
+++..+..+|. .|...|...+...|+++|++.||=.-
T Consensus 5 ~~t~~a~~~l~------------~A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 5 RFTERAQKVLA------------LAQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHhc
Confidence 57888888885 46778989999999999999998544
No 133
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=22.96 E-value=1.4e+02 Score=18.47 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=21.3
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHhhcC
Q 032293 59 TANDICKESKRQTINAEDVLKAIEEID 85 (143)
Q Consensus 59 ~A~~~a~~~kRKTIs~eDVl~AL~~lg 85 (143)
.+....-.++.-+|+.+++..+|..++
T Consensus 46 ~~F~~~D~d~~G~I~~~el~~~l~~~~ 72 (110)
T 1pva_A 46 KVFKAIDADASGFIEEEELKFVLKSFA 72 (110)
T ss_dssp HHHHHHCTTCSSSBCHHHHHTGGGGTC
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence 455555567778999999999999983
No 134
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=22.78 E-value=74 Score=28.75 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 36 ~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
+++..+..+|. .|...|...+...|+++|++.||=
T Consensus 5 ~~t~~a~~al~------------~A~~~A~~~~h~~i~~eHLLlaLl 39 (854)
T 1qvr_A 5 RWTQAAREALA------------QAQVLAQRMKHQAIDLPHLWAVLL 39 (854)
T ss_dssp CSCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHC
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCCccHHHHHHHHH
Confidence 57888888885 477888889999999999999983
No 135
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=22.68 E-value=1.2e+02 Score=17.85 Aligned_cols=26 Identities=8% Similarity=0.258 Sum_probs=17.6
Q ss_pred HHhHhcCCCCCChHHHHHHHhhcCcc
Q 032293 62 DICKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 62 ~~a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
...-.++.-+|+.+++..+|..+|+.
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~ 46 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGAN 46 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSC
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 33445556678888888888877764
No 136
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=22.61 E-value=47 Score=20.56 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=15.1
Q ss_pred CCChHHHHHHHhhcCcc
Q 032293 71 TINAEDVLKAIEEIDFT 87 (143)
Q Consensus 71 TIs~eDVl~AL~~lgF~ 87 (143)
.++..+|+.+|+..||.
T Consensus 4 p~~~~elik~L~~~G~~ 20 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFV 20 (70)
T ss_dssp CCCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHCCCE
Confidence 46889999999999996
No 137
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=22.25 E-value=67 Score=25.07 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=35.4
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHH
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAI 81 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL 81 (143)
.++...+.+.++..+.. .++.|+.++..+|.+.+.-=+..+..+-...+.-.+..+|+.+||...+
T Consensus 141 ~l~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~ 206 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQ----LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAV 206 (343)
T ss_dssp CCCTTHHHHHHHHHHHH----TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 34555566555555532 2578999999888876542222222222222222233478877765543
No 138
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=22.09 E-value=1.1e+02 Score=17.61 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=12.4
Q ss_pred hcCCCCCChHHHHHHHhhcCcc
Q 032293 66 ESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 66 ~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
.++.-+|+.+++..+|..+|+.
T Consensus 18 ~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 18 TNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp CSSSSEEEHHHHHHHHHHHTCC
T ss_pred CCCCCCCcHHHHHHHHHHhCCC
Confidence 3444456666666666666543
No 139
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.03 E-value=1.7e+02 Score=19.02 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=24.9
Q ss_pred HHHHhHhcCCCCCChHHHHHHHhhcCcccchHHHHHH
Q 032293 60 ANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (143)
Q Consensus 60 A~~~a~~~kRKTIs~eDVl~AL~~lgF~~yi~~l~~~ 96 (143)
+....-.++.-.|+.+++..+|..+|..---..+...
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 137 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAM 137 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4444555667789999999999998865333334433
No 140
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=21.88 E-value=1.3e+02 Score=18.63 Aligned_cols=79 Identities=10% Similarity=-0.096 Sum_probs=41.4
Q ss_pred ccCchhHHHHHHhccccCCCCCCcccccHH-HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhhc---Cc
Q 032293 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKD-ALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI---DF 86 (143)
Q Consensus 11 ~~LP~a~V~RI~K~~Lp~~~~~~~~~Iskd-A~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~l---gF 86 (143)
..++..-|.+|++..= + +-.|+-+ ...++... ..-. --...+....-.++.-+|+.+++..+|..+ |.
T Consensus 5 ~~~~~~e~~~~~~~~d----~--~g~i~~~eF~~~~~~~-~~~~-~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~ 76 (109)
T 1bu3_A 5 GILADADVAAALKACE----A--ADSFNYKAFFAKVGLT-AKSA-DDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGAR 76 (109)
T ss_dssp CSSCHHHHHHHHHHTC----S--TTCCCHHHHHHHHTGG-GSCH-HHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCC
T ss_pred ccCCHHHHHHHHHHhC----C--CCcCcHHHHHHHHHcC-hhhH-HHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCC
Confidence 3566778888888752 1 2234432 22221100 0000 011234455556777789999999999998 54
Q ss_pred ccchHHHHHHH
Q 032293 87 TEFVDPLRDSL 97 (143)
Q Consensus 87 ~~yi~~l~~~l 97 (143)
.---..+...+
T Consensus 77 ~~~~~~~~~~~ 87 (109)
T 1bu3_A 77 ALTDAETKAFL 87 (109)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 33333444433
No 141
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=21.77 E-value=58 Score=21.64 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=19.1
Q ss_pred CCChHHHHHHHhhc--CcccchHHHH
Q 032293 71 TINAEDVLKAIEEI--DFTEFVDPLR 94 (143)
Q Consensus 71 TIs~eDVl~AL~~l--gF~~yi~~l~ 94 (143)
.-|.+||..-|+.+ ||..|.+...
T Consensus 16 ~WsvedV~~wl~~~~~g~~~y~~~F~ 41 (89)
T 1pk1_B 16 DWTIEEVIQYIESNDNSLAVHGDLFR 41 (89)
T ss_dssp GCCHHHHHHHHHHHCGGGGGGHHHHH
T ss_pred hCCHHHHHHHHHHHccchHHHHHHHH
Confidence 46889999999988 7888876553
No 142
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=21.72 E-value=1.2e+02 Score=23.77 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhHhcCC------------------CCCChHHHHHHHhhcC
Q 032293 49 ARIFIHYLSATANDICKESKR------------------QTINAEDVLKAIEEID 85 (143)
Q Consensus 49 a~~FI~~lt~~A~~~a~~~kR------------------KTIs~eDVl~AL~~lg 85 (143)
...|..-|+-+-.++|..-.. -.||++||+.|++.|.
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~ 142 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLK 142 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhh
Confidence 378888899888888875422 3899999999999764
No 143
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=21.43 E-value=1.2e+02 Score=18.05 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=17.2
Q ss_pred HhcCCCCCChHHHHHHHhhcCcc
Q 032293 65 KESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 65 ~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
-.++.-+|+.+++..+|..+|+.
T Consensus 24 D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 24 DRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp STTTTSCBCHHHHHHHHHHTSCC
T ss_pred CCCCCCcCcHHHHHHHHHHHcCC
Confidence 34555678888888888888864
No 144
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=21.42 E-value=1.6e+02 Score=18.36 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=20.5
Q ss_pred HHhHhcCCCCCChHHHHHHHhhcCcc
Q 032293 62 DICKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 62 ~~a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
...-.++.-+|+.+++..+|..+|+.
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~ 61 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEK 61 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCC
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCC
Confidence 44456667789999999999998865
No 145
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=21.34 E-value=1.8e+02 Score=18.98 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=22.5
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHhhcCcc
Q 032293 59 TANDICKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 59 ~A~~~a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
.|....-.++.-.|+.+++..+|..+|..
T Consensus 87 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 115 (148)
T 1exr_A 87 EAFKVFDRDGNGLISAAELRHVMTNLGEK 115 (148)
T ss_dssp HHHHHHSTTCSSCBCHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHhCCC
Confidence 35555556777789999999999998854
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=21.24 E-value=1.8e+02 Score=21.71 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=37.1
Q ss_pred cCchhHHHHHHhccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHHHHhh
Q 032293 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (143)
Q Consensus 12 ~LP~a~V~RI~K~~Lp~~~~~~~~~IskdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTIs~eDVl~AL~~ 83 (143)
.++..-+..++...+.. .++.++.++...|.+.+.--+..+-......+. ...+|+.++|..++..
T Consensus 168 ~l~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~i~~~~v~~~~~~ 233 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAEN----EGLELTEEGLQAILYIAEGDMRRAINILQAAAA--LDKKITDENVFMVASR 233 (327)
T ss_dssp CCCHHHHHHHHHHHHHT----TTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSEECHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHCC
Confidence 34556666666665532 246789999888877654322222222222221 2237888888777654
No 147
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=21.14 E-value=79 Score=27.84 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.0
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHh
Q 032293 58 ATANDICKESKRQTINAEDVLKAIE 82 (143)
Q Consensus 58 ~~A~~~a~~~kRKTIs~eDVl~AL~ 82 (143)
..|...|...+...|+++|++.||=
T Consensus 11 ~~A~~~A~~~~h~~i~~eHLLlaLl 35 (758)
T 1r6b_X 11 NMAFARAREHRHEFMTVEHLLLALL 35 (758)
T ss_dssp HHHHHHHHHTTBSEECHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHH
Confidence 3477888888999999999999973
No 148
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=20.04 E-value=63 Score=17.61 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=13.7
Q ss_pred CChHHHHHHHhhcCcc
Q 032293 72 INAEDVLKAIEEIDFT 87 (143)
Q Consensus 72 Is~eDVl~AL~~lgF~ 87 (143)
++.++|..+++.+||.
T Consensus 47 ~~~~~i~~~i~~~G~~ 62 (64)
T 2xmm_A 47 LGEEQLRTAIASAGYE 62 (64)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 5788899999999985
No 149
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=20.04 E-value=2e+02 Score=18.92 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=22.5
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHhhcCcc
Q 032293 59 TANDICKESKRQTINAEDVLKAIEEIDFT 87 (143)
Q Consensus 59 ~A~~~a~~~kRKTIs~eDVl~AL~~lgF~ 87 (143)
.|....-.++.-+|+.+++..+|..+|..
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 117 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 35555556777789999999999998854
Done!