BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032296
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
PE=2 SV=1
Length = 143
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 134/141 (95%), Positives = 140/141 (99%)
Query: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR +QQCSFVEHRNYKIVY
Sbjct: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61 RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120
Query: 121 NGCIVETSKSNILSPIQLMEK 141
NGCIVETSK+NILSPIQLM+K
Sbjct: 121 NGCIVETSKANILSPIQLMDK 141
>sp|Q9Y587|AP4S1_HUMAN AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1
Length = 144
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 118/141 (83%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
I+F LMVNKQGQTRL++YYE + + +R LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2 IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA+LF +VGV++ ENE+AI EFIH VE +D +F V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62 YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121
Query: 123 CIVETSKSNILSPIQLMEKMS 143
CIVET+++ IL+P+ +++KMS
Sbjct: 122 CIVETNRARILAPLLILDKMS 142
>sp|Q3ZBB6|AP4S1_BOVIN AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1
Length = 144
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 118/141 (83%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
I+F LMVNKQGQTRL++YYE + + +R LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2 IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA+LF +VGV++ ENE+AI EFIH VE +D +F V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62 YAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNG 121
Query: 123 CIVETSKSNILSPIQLMEKMS 143
CIVET+++ IL+P+ +++KMS
Sbjct: 122 CIVETNRARILAPLLILDKMS 142
>sp|Q9WVL1|AP4S1_MOUSE AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1
Length = 144
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 117/141 (82%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
I+F LMVNKQGQTRL++YYE + + +R LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct: 2 IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA+LF +VGV++ ENE+AI EFIH VE +D +F V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62 YAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNG 121
Query: 123 CIVETSKSNILSPIQLMEKMS 143
CIVET+++ IL+P+ +++K+S
Sbjct: 122 CIVETNRARILAPLLILDKLS 142
>sp|Q54NZ4|AP4S_DICDI AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1
PE=3 SV=1
Length = 139
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 111/141 (78%), Gaps = 4/141 (2%)
Query: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
M I++ L+VN +G+TRL+QYYE + EER A+E EI+RKCL+RTE QCSFVE+++YK++Y
Sbjct: 1 MAIKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIY 60
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
R+YA+LFF+VGVD ENELAILE IH VE +D F NV IMF+L+KAHF+L+EMV
Sbjct: 61 RKYATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVS 116
Query: 121 NGCIVETSKSNILSPIQLMEK 141
NG IVE SK +IL + L+ K
Sbjct: 117 NGDIVEISKQHILEFVNLLYK 137
>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vas2 PE=1 SV=1
Length = 162
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 105/136 (77%)
Query: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
M I+F L+V++QG+ RLA+++ L+++ER + ++ + R + C+FVE++ KIVY
Sbjct: 1 MSIKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVY 60
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
RRYASLFF+ G++ D+NEL ILE IH VE +D++FGNVCELD++F+ EKA++++EE+++
Sbjct: 61 RRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLL 120
Query: 121 NGCIVETSKSNILSPI 136
G + E+SK+N+LS +
Sbjct: 121 AGELQESSKTNVLSAV 136
>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1
Length = 160
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 101/135 (74%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
++F+L+ ++QG+ RL ++Y L+ +E++ + E+V+ LAR + CSF+E R+ KIVY+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F +++ +NEL LE IH VE +D++FG+VCELDI+F+ EKA+F+L+E ++ G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 123 CIVETSKSNILSPIQ 137
+ ETSK N+L I+
Sbjct: 121 EVQETSKKNVLKAIE 135
>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1
Length = 160
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 101/135 (74%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
++F+L+ ++QG+ RL ++Y L+ +E++ + E+V+ LAR + CSF+E R+ KIVY+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F +++ +NEL LE IH VE +D++FG+VCELDI+F+ EKA+F+L+E ++ G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 123 CIVETSKSNILSPIQ 137
+ ETSK N+L I+
Sbjct: 121 EVQETSKKNVLKAIE 135
>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1
Length = 157
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 101/135 (74%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
++F+L+ ++QG+ RL ++Y L+ +E++ + E+V+ LAR + CSF+E R+ KIVY+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F +++ +NEL LE IH VE +D++FG+VCELDI+F+ EKA+F+L+E ++ G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 123 CIVETSKSNILSPIQ 137
+ ETSK N+L I+
Sbjct: 121 EVQETSKKNVLKAIE 135
>sp|P61967|AP1S1_MOUSE AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1
Length = 158
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 99/135 (73%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
+RF+L+ ++QG+ RL ++Y + +ER+ + E+++ LAR + CSF+E R+ K+VY+R
Sbjct: 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F ++ +NEL LE IH VE +D++FG+VCELDI+F+ EKA+F+L+E +M G
Sbjct: 62 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121
Query: 123 CIVETSKSNILSPIQ 137
+ +TSK ++L I+
Sbjct: 122 DVQDTSKKSVLKAIE 136
>sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1
Length = 158
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 99/135 (73%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
+RF+L+ ++QG+ RL ++Y + +ER+ + E+++ LAR + CSF+E R+ K+VY+R
Sbjct: 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F ++ +NEL LE IH VE +D++FG+VCELDI+F+ EKA+F+L+E +M G
Sbjct: 62 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121
Query: 123 CIVETSKSNILSPIQ 137
+ +TSK ++L I+
Sbjct: 122 DVQDTSKKSVLKAIE 136
>sp|Q1JQ98|AP1S1_BOVIN AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1
Length = 157
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 99/135 (73%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
+RF+L+ ++QG+ RL ++Y + +ER+ + E+++ LAR + CSF+E R+ K+VY+R
Sbjct: 1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 60
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F ++ +NEL LE IH VE +D++FG+VCELDI+F+ EKA+F+L+E +M G
Sbjct: 61 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 120
Query: 123 CIVETSKSNILSPIQ 137
+ +TSK ++L I+
Sbjct: 121 DVQDTSKKSVLKAIE 135
>sp|Q7SAQ1|AP2S_NEUCR AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=aps-2 PE=3 SV=1
Length = 143
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQ-QCSFVEHRNYKIVYR 61
+ FIL+ N+QG+TRLA++Y + EE+ L+GEI R R ++ Q +FVE RN+K+VYR
Sbjct: 2 LSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVYR 61
Query: 62 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMN 121
RYA LFF VD ++NELA LE IH VE +D FGNVCELD++F+ K + +L+E+ +
Sbjct: 62 RYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLA 121
Query: 122 GCIVETSKSNILSPIQLMEKM 142
G I ETSK +L+ ++ ++K+
Sbjct: 122 GEIEETSKQVVLTRLEHLDKL 142
>sp|Q4ICG5|AP2S_GIBZE AP-2 complex subunit sigma OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=APS2 PE=3 SV=1
Length = 143
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQ-QCSFVEHRNYKIVYR 61
+ FIL+ N+QG+TRLA++Y + E++ L+GE+ R R ++ Q +FVE RN KIVYR
Sbjct: 2 LSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYR 61
Query: 62 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMN 121
RYA LFF VD ++NELA LE IH VE +D FGNVCELD++F+ K + +L+E+ +
Sbjct: 62 RYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLA 121
Query: 122 GCIVETSKSNILSPIQLMEKM 142
G I ETSK +L+ ++ ++K+
Sbjct: 122 GEIEETSKQVVLTRLEHLDKL 142
>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2
PE=3 SV=1
Length = 154
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 96/137 (70%)
Query: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
M F+L++++QG+TRL ++Y T +E+ EI L R + C+F+E + YKI++
Sbjct: 1 MTFHFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIF 60
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
+RYASL+F+V D ++NEL +LE IH VE +DR+FGNVCELD++F+ KA+++L+E++M
Sbjct: 61 KRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIM 120
Query: 121 NGCIVETSKSNILSPIQ 137
G + ETSK +L I
Sbjct: 121 AGELQETSKKTVLRLIS 137
>sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2
SV=1
Length = 142
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
IRFIL+ N+QG+TRLA+YY L E+ +E E+ R + R + +FVE R +K++YRR
Sbjct: 2 IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA LFF V VD +NELA LE IHL VE +D F NVCELD++F+ K + +L+E ++ G
Sbjct: 62 YAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
+ ETSK I+ + +EK+
Sbjct: 122 ELQETSKRAIIERMSELEKL 141
>sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1
Length = 154
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 95/135 (70%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
I FIL+ ++QG+ RL ++Y L +ER+ + +I++ L+R + SF++ + K+VY+R
Sbjct: 2 IHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F ++N +NEL LE +H VE +D++FGNVCELDI+F+ EKA+F+L+E ++ G
Sbjct: 62 YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGG 121
Query: 123 CIVETSKSNILSPIQ 137
I ETSK + I+
Sbjct: 122 EIQETSKKTAVKAIE 136
>sp|P35181|AP1S1_YEAST AP-1 complex subunit sigma-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APS1 PE=1 SV=1
Length = 156
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 100/142 (70%), Gaps = 2/142 (1%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
++++L+V++QG+ RL ++Y ++ E+ + ++ LAR + C+ +E+ ++K+VY+R
Sbjct: 4 LKYLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVVYKR 63
Query: 63 YASLFFLVGVDND-ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM- 120
YASL+F+VG+ D +NEL LE IH VETMD +FGNVCELDI+F+ K + +L EM+M
Sbjct: 64 YASLYFIVGMTPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEMIMC 123
Query: 121 NGCIVETSKSNILSPIQLMEKM 142
+G I E+S+ +L + +M+ M
Sbjct: 124 DGSIAESSRKEVLHHVTVMDTM 145
>sp|Q96PC3|AP1S3_HUMAN AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1
Length = 154
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 95/135 (70%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
I FIL+ ++QG+ RL ++Y L +ER+ + EIV+ L+R + SFV+ + K+VY+R
Sbjct: 2 IHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F ++N +NEL LE +H VE +D++FGNVCELDI+F+ EKA+F+L+E ++ G
Sbjct: 62 YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGG 121
Query: 123 CIVETSKSNILSPIQ 137
I ETSK + I+
Sbjct: 122 EIQETSKKIAVKAIE 136
>sp|Q4WS49|AP2S_ASPFU AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=aps2 PE=3
SV=1
Length = 145
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 101/144 (70%), Gaps = 2/144 (1%)
Query: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQ-QCSFVE-HRNYKI 58
M + FIL+ N+QG+TRLA++Y + EE+ L+GE+ R R ++ Q +FVE R+ KI
Sbjct: 1 MVLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKI 60
Query: 59 VYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEM 118
VYRRYA LFF V VD +NELA LE IH VE +D+ FGNVCELD++F+ K + +L+E+
Sbjct: 61 VYRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEV 120
Query: 119 VMNGCIVETSKSNILSPIQLMEKM 142
+ G I ETSK +L+ ++ ++K+
Sbjct: 121 FLAGEIEETSKQVVLTRLEHLDKL 144
>sp|Q5BFF8|AP2S_EMENI AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aps2 PE=3
SV=1
Length = 145
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Query: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQ-QCSFVE-HRNYKI 58
M + FIL+ N+QG+TRLA++Y + EE+ L+GE+ R R ++ Q +FVE R+ KI
Sbjct: 1 MVLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKI 60
Query: 59 VYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEM 118
VYRRYA LFF VD +NELA LE IH VE +D+ FGNVCELD++F+ K + +L+E+
Sbjct: 61 VYRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEV 120
Query: 119 VMNGCIVETSKSNILSPIQLMEKM 142
+ G I ETSK +L+ ++ ++K+
Sbjct: 121 FLAGEIEETSKQVVLTRLEHLDKL 144
>sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1
PE=2 SV=1
Length = 161
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 97/140 (69%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
I F+L+V++QG+ RL ++Y T +ER + E+ L R + C+F+E R YK+VY+R
Sbjct: 2 IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F + +D +NEL +LE IH VE +DR+FG+VCELD++F+ KA+++L+E+++ G
Sbjct: 62 YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
+ E+SK + I +++
Sbjct: 122 ELQESSKKTVARIISAQDQL 141
>sp|O23685|AP1S2_ARATH AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2
PE=2 SV=1
Length = 162
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 97/140 (69%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
I F+L+V++QG+ RL ++Y +ER + E+ L R + C+FVE R YK+VY+R
Sbjct: 2 IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YASL+F + +D ++NEL +LE IH VE +DR+FG+VCELD++F+ KA+++L+E+++ G
Sbjct: 62 YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
+ E+SK + I +++
Sbjct: 122 ELQESSKKTVARIISAQDQL 141
>sp|Q553S2|AP3S_DICDI AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1
PE=3 SV=1
Length = 171
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 100/148 (67%), Gaps = 8/148 (5%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVE--------HR 54
I+ IL++N G+ RL ++YE + E+++ + E+ RTE+ C+F+E +
Sbjct: 2 IKSILIINNHGKPRLIKFYEHYSEEKQQQIIRELFLLVSKRTERSCNFLEIGNNSNIFDK 61
Query: 55 NYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFM 114
+ KI+YR YA+LFF+ VD+ E+EL+I++ I VE++D+ F NVCELD++FH++K H++
Sbjct: 62 DTKIIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFENVCELDLIFHIDKVHYI 121
Query: 115 LEEMVMNGCIVETSKSNILSPIQLMEKM 142
L+EMVM G ++ET+ + I S ++ K+
Sbjct: 122 LDEMVMGGLVLETNPTIIFSNYEIQNKL 149
>sp|Q54H39|AP2S_DICDI AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1
PE=3 SV=2
Length = 142
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 94/141 (66%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
I FIL+ N+QG+TRL+++Y E+R L EI + +R + +FVE R ++IVYRR
Sbjct: 2 IHFILIQNRQGKTRLSKWYTPYEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA LFF V VD +NEL LE IHL VE +D +FGNVCELD++F+ K + +++E+ + G
Sbjct: 62 YAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLAG 121
Query: 123 CIVETSKSNILSPIQLMEKMS 143
++E SK IL ++ ++ +
Sbjct: 122 ELMEPSKHVILQRMEFLDNLP 142
>sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma OS=Zea mays GN=AP-17 PE=2 SV=1
Length = 132
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 88/129 (68%), Gaps = 2/129 (1%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
IRFIL+ N+QG+TRLA+YY L E+ +E E+ R + R + +FVE R +K++YRR
Sbjct: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKA--HFMLEEMVM 120
YA LFF + VD +NELA LE IHL VE +D F NVCELD++F+ K + +L+E ++
Sbjct: 62 YAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFIL 121
Query: 121 NGCIVETSK 129
G + ETSK
Sbjct: 122 AGELQETSK 130
>sp|Q9Y7L6|AP2S_SCHPO AP-2 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps2 PE=3 SV=1
Length = 143
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQ-QCSFVEHRNYKIVYR 61
I+FIL+ N+ G+ RL++YY +E+ L+ I + R ++ Q +F+E N K+VYR
Sbjct: 2 IQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYR 61
Query: 62 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMN 121
RYA L+F VD+ +N+LAILE IH VE +D FGNVCELD++F+ K +L+E+++
Sbjct: 62 RYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILG 121
Query: 122 GCIVETSKSNILSPIQLMEKM 142
G I E++K ++L I+ +EK+
Sbjct: 122 GEIGESNKKSVLERIEALEKL 142
>sp|P62744|AP2S1_RAT AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1
Length = 142
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 94/140 (67%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
IRFIL+ N+ G+TRLA++Y +E++ L E+ R + +FVE RN+KI+YRR
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ K + +++EM + G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
I ETS++ +L + +++ +
Sbjct: 122 EIRETSQTKVLKQLLMLQSL 141
>sp|Q5R940|AP2S1_PONAB AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1
Length = 142
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 94/140 (67%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
IRFIL+ N+ G+TRLA++Y +E++ L E+ R + +FVE RN+KI+YRR
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ K + +++EM + G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
I ETS++ +L + +++ +
Sbjct: 122 EIRETSQTKVLKQLLMLQSL 141
>sp|P62743|AP2S1_MOUSE AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1
Length = 142
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 94/140 (67%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
IRFIL+ N+ G+TRLA++Y +E++ L E+ R + +FVE RN+KI+YRR
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ K + +++EM + G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
I ETS++ +L + +++ +
Sbjct: 122 EIRETSQTKVLKQLLMLQSL 141
>sp|P53680|AP2S1_HUMAN AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2
Length = 142
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 94/140 (67%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
IRFIL+ N+ G+TRLA++Y +E++ L E+ R + +FVE RN+KI+YRR
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ K + +++EM + G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
I ETS++ +L + +++ +
Sbjct: 122 EIRETSQTKVLKQLLMLQSL 141
>sp|Q17QC5|AP2S1_BOVIN AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1
Length = 142
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 94/140 (67%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
IRFIL+ N+ G+TRLA++Y +E++ L E+ R + +FVE RN+KI+YRR
Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
YA L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ K + +++EM + G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
I ETS++ +L + +++ +
Sbjct: 122 EIRETSQTKVLKQLLMLQSL 141
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 98/145 (67%), Gaps = 5/145 (3%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVE-----HRNYK 57
I+ ++M+N QG+ RLA++Y++L +E+++ L + +R E +F+E + +
Sbjct: 2 IKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSR 61
Query: 58 IVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEE 117
+VY+ YA+L+F++ D ENELA+L+ I +LVET+D+ F NVCELDI+F+ K H +L+E
Sbjct: 62 LVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDE 121
Query: 118 MVMNGCIVETSKSNILSPIQLMEKM 142
+V G ++ETS + ++ ++ + K+
Sbjct: 122 IVFGGQVLETSSAEVMKAVEEISKL 146
>sp|Q5RDP9|AP3S2_PONAB AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1
Length = 193
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 96/146 (65%), Gaps = 6/146 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEH------RNY 56
I+ IL+ N G+ RL ++Y+ E ++ + E L R + C+F+E +Y
Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61
Query: 57 KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLE 116
K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++K H++L+
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121
Query: 117 EMVMNGCIVETSKSNILSPIQLMEKM 142
E+VM G ++ET+ + I++ I+ ++
Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNRL 147
>sp|Q8BSZ2|AP3S2_MOUSE AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1
Length = 193
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 96/146 (65%), Gaps = 6/146 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEH------RNY 56
I+ IL+ N G+ RL ++Y+ E ++ + E L R + C+F+E +Y
Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61
Query: 57 KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLE 116
K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++K H++L+
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121
Query: 117 EMVMNGCIVETSKSNILSPIQLMEKM 142
E+VM G ++ET+ + I++ I+ ++
Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNRL 147
>sp|P59780|AP3S2_HUMAN AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1
Length = 193
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 96/146 (65%), Gaps = 6/146 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEH------RNY 56
I+ IL+ N G+ RL ++Y+ E ++ + E L R + C+F+E +Y
Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61
Query: 57 KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLE 116
K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++K H++L+
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121
Query: 117 EMVMNGCIVETSKSNILSPIQLMEKM 142
E+VM G ++ET+ + I++ I+ ++
Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNRL 147
>sp|Q1JQA3|AP3S2_BOVIN AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1
Length = 193
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 96/146 (65%), Gaps = 6/146 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEH------RNY 56
I+ IL+ N G+ RL ++Y+ E ++ + E L R + C+F+E +Y
Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61
Query: 57 KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLE 116
K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++K H++L+
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121
Query: 117 EMVMNGCIVETSKSNILSPIQLMEKM 142
E+VM G ++ET+ + I++ I+ ++
Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNRL 147
>sp|Q9DCR2|AP3S1_MOUSE AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap3s1 PE=1 SV=2
Length = 193
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 93/146 (63%), Gaps = 6/146 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEH------RNY 56
I+ IL+ N G+ RL+++Y+ + + ++ + E R E C+F+E +
Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDN 61
Query: 57 KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLE 116
K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++K H +L
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 121
Query: 117 EMVMNGCIVETSKSNILSPIQLMEKM 142
EMVM G ++ET+ + I++ I K+
Sbjct: 122 EMVMGGMVLETNMNEIVTQIDAQNKL 147
>sp|Q92572|AP3S1_HUMAN AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP3S1 PE=1 SV=1
Length = 193
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 93/146 (63%), Gaps = 6/146 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEH------RNY 56
I+ IL+ N G+ RL+++Y+ + + ++ + E R E C+F+E +
Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDN 61
Query: 57 KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLE 116
K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++K H +L
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 121
Query: 117 EMVMNGCIVETSKSNILSPIQLMEKM 142
EMVM G ++ET+ + I++ I K+
Sbjct: 122 EMVMGGMVLETNMNEIVTQIDAQNKL 147
>sp|Q2YDH6|AP3S1_BOVIN AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S1 PE=2 SV=1
Length = 193
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 93/146 (63%), Gaps = 6/146 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEH------RNY 56
I+ IL+ N G+ RL+++Y+ + + ++ + E R E C+F+E +
Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDN 61
Query: 57 KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLE 116
K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++K H +L
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 121
Query: 117 EMVMNGCIVETSKSNILSPIQLMEKM 142
EMVM G ++ET+ + I++ I K+
Sbjct: 122 EMVMGGMVLETNMNEIVTQIDAQNKL 147
>sp|Q54WW3|AP1S1_DICDI AP-1 complex subunit sigma-1 OS=Dictyostelium discoideum GN=ap1s1
PE=3 SV=1
Length = 156
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 89/140 (63%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
I F+L N+Q + RL+++Y T E+ E++ + L+R+ + C+FV+ R + IVY+R
Sbjct: 2 IHFLLCFNRQSKVRLSKFYSTYTPTEKNRATREVMNQVLSRSPKFCNFVQWREFTIVYQR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
+ASLFF++ D+ +NEL LE I V +D FGN+CELD+++ ++A+ +L+E ++ G
Sbjct: 62 FASLFFVMVTDSTDNELVTLESIQRFVVVLDIVFGNICELDLIYEFQRAYQVLDEFLLTG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
+ E+S IL I E M
Sbjct: 122 HLQESSSKEILRAINDAEGM 141
>sp|Q00381|AP2S_YEAST AP-2 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS2 PE=1 SV=1
Length = 147
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 94/147 (63%), Gaps = 4/147 (2%)
Query: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEG--EIVRKCLART-EQQCSFVEHRN-Y 56
M ++FIL NKQG RL ++++ + + +R+ + +I R +R + Q +FVE +
Sbjct: 1 MAVQFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDST 60
Query: 57 KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLE 116
K++YRRYA L+F++GVD ++E L IHL VE +D FGNVCELDI+F+ K + +++
Sbjct: 61 KLIYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMD 120
Query: 117 EMVMNGCIVETSKSNILSPIQLMEKMS 143
EM + G I E SK +L + +++++
Sbjct: 121 EMFIGGEIQEISKDMLLERLSILDRLD 147
>sp|Q09905|AP3S_SCHPO AP-3 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps3 PE=3 SV=1
Length = 165
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 80/132 (60%), Gaps = 4/132 (3%)
Query: 6 ILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHR----NYKIVYR 61
+ + N +G+ RL ++Y + ++ L G+I R C+F+E +I+YR
Sbjct: 5 VFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNRIIYR 64
Query: 62 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMN 121
+YA+L+F+ VD E+EL IL+ I + VE +DR F NVCELD++F ++ H +L E+V
Sbjct: 65 QYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSG 124
Query: 122 GCIVETSKSNIL 133
G ++ET+ + I+
Sbjct: 125 GLVLETNLNEIV 136
>sp|Q75F71|AP3S_ASHGO AP-3 complex subunit sigma OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APS3 PE=3 SV=1
Length = 185
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 14/155 (9%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQ-QCSFVE--------- 52
I +L+ NK+ Q RL +YY + L +++ L ++ R Q SF+
Sbjct: 2 IHAVLIFNKKCQPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSSG 61
Query: 53 ----HRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 108
+ + +I+Y+ YA+L+F VD+ E+ELAIL+ I VE +DR F V ELD++F+
Sbjct: 62 SETINEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFNW 121
Query: 109 EKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS 143
+ +LEE++ G ++ET+ I+ + + + S
Sbjct: 122 QTLESVLEEIIQGGMVIETNVKKIVETVDELNRTS 156
>sp|P47064|AP3S_YEAST AP-3 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS3 PE=1 SV=1
Length = 194
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 89/159 (55%), Gaps = 18/159 (11%)
Query: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR-TEQQCSFV---------- 51
I +L+ NK+ Q RL ++Y + L +++ L ++ R ++ Q SF+
Sbjct: 2 IHAVLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLSN 61
Query: 52 -------EHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDI 104
+ + +I+Y+ YA+L+F VD+ E+ELAIL+ I VE++DR F V ELD+
Sbjct: 62 ENNNDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELDL 121
Query: 105 MFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS 143
+F+ + +LEE+V G ++ET+ + I++ + + K +
Sbjct: 122 IFNWQTLESVLEEIVQGGMVIETNVNRIVASVDELNKAA 160
>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0838800 PE=2 SV=1
Length = 177
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 3 IRFILMVNKQGQTRLAQYY--EWLTLEERRALEGEI---VRKCLARTEQQCSFVEHRNYK 57
++ IL+++ +G+ +YY +W +L ++A E + +K ARTE + V +Y
Sbjct: 7 VKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAE--IVMFDSYF 64
Query: 58 IVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC-------ELDIMFHLEK 110
+VY+ L F V ++ENEL + + E +D N LD++F
Sbjct: 65 VVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIF---- 120
Query: 111 AHFMLEEMVMNGCIVETSKSNILSPIQ 137
L+E+V G ++ET IL +
Sbjct: 121 --LCLDEVVDGGIVLETDAKAILEKVS 145
>sp|Q9P299|COPZ2_HUMAN Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1
Length = 210
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYE--WLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
I+ + +++ G+ LA+YY+ + +++E+ E + K +RTE + +F IVY
Sbjct: 46 IKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT-SRTESEIAF--FGGMTIVY 102
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKAHFMLEEMV 119
+ LF V + ENEL ++ + L E+++ NV + ++ +++ A +L+E+V
Sbjct: 103 KNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIV 162
Query: 120 MNGCIVETSKSNILSPI 136
G I+E+ ++ +
Sbjct: 163 DGGVILESDPQQVIQKV 179
>sp|Q5R5F2|COPZ1_PONAB Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1
Length = 177
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYE--WLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
++ IL+++ G A+YY+ + +++E++A E I K RT+ + + +E +VY
Sbjct: 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKAHFMLEEMV 119
+ L+F V + ENEL ++ ++ L +++ + NV + ++ ++E ++E+V
Sbjct: 70 KSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129
Query: 120 MNGCIVETSKSNILSPIQL 138
G I+E+ ++ + L
Sbjct: 130 DGGVILESDPQQVVHRVAL 148
>sp|P61924|COPZ1_MOUSE Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1
Length = 177
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYE--WLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
++ IL+++ G A+YY+ + +++E++A E I K RT+ + + +E +VY
Sbjct: 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKAHFMLEEMV 119
+ L+F V + ENEL ++ ++ L +++ + NV + ++ ++E ++E+V
Sbjct: 70 KSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129
Query: 120 MNGCIVETSKSNILSPIQL 138
G I+E+ ++ + L
Sbjct: 130 DGGVILESDPQQVVHRVAL 148
>sp|P61923|COPZ1_HUMAN Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1
Length = 177
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 3 IRFILMVNKQGQTRLAQYYE--WLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
++ IL+++ G A+YY+ + +++E++A E I K RT+ + + +E +VY
Sbjct: 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKAHFMLEEMV 119
+ L+F V + ENEL ++ ++ L +++ + NV + ++ ++E ++E+V
Sbjct: 70 KSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129
Query: 120 MNGCIVETSKSNILSPIQL 138
G I+E+ ++ + L
Sbjct: 130 DGGVILESDPQQVVHRVAL 148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,485,328
Number of Sequences: 539616
Number of extensions: 1759847
Number of successful extensions: 4757
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4666
Number of HSP's gapped (non-prelim): 89
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)