Query 032296
Match_columns 143
No_of_seqs 109 out of 852
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 19:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w63_Q Adapter-related protein 100.0 5.3E-46 1.8E-50 273.1 19.2 141 2-142 1-141 (158)
2 3tjz_C Coatomer subunit zeta-1 100.0 4E-46 1.4E-50 272.6 18.1 136 2-140 12-150 (153)
3 2vgl_S AP-2 complex subunit si 100.0 1.4E-45 4.9E-50 266.2 20.6 142 2-143 1-142 (142)
4 1w63_M Adaptor-related protein 100.0 2.1E-36 7.3E-41 251.1 9.8 136 1-139 1-138 (423)
5 2vgl_M AP-2 complex subunit MU 100.0 3.8E-35 1.3E-39 244.3 16.7 134 2-139 1-136 (435)
6 2nut_C Vesicle-trafficking pro 96.6 0.058 2E-06 39.6 12.2 94 2-97 2-101 (196)
7 2j3t_C Trafficking protein par 96.5 0.039 1.3E-06 39.0 10.4 93 1-95 1-108 (145)
8 2j3w_A Sedlin, trafficking pro 95.2 0.48 1.6E-05 33.0 12.8 95 1-96 3-112 (142)
9 2vx8_A Nucleoporin-like protei 95.2 0.15 5.1E-06 36.9 8.9 83 12-98 53-135 (169)
10 4b93_A Vesicle-associated memb 95.2 0.48 1.7E-05 34.6 11.7 89 1-97 2-92 (189)
11 3cue_C Transport protein parti 95.1 0.091 3.1E-06 37.7 7.5 93 1-95 1-114 (159)
12 3bw6_A Synaptobrevin homolog Y 95.0 0.56 1.9E-05 32.8 12.6 97 1-98 5-111 (144)
13 3cpt_A Mitogen-activated prote 94.3 0.92 3.2E-05 32.0 11.3 92 3-95 38-136 (143)
14 3cue_A Transport protein parti 94.0 1.4 4.9E-05 33.1 13.5 22 1-22 1-22 (219)
15 3kyq_A YKT6, synaptobrevin hom 93.2 1.8 6.3E-05 31.8 13.5 97 1-97 2-107 (199)
16 4afi_A AP-3 complex subunit de 91.9 2.6 8.8E-05 30.4 13.3 81 12-98 63-145 (173)
17 1nrj_A Signal recognition part 90.2 1.8 6E-05 30.7 7.8 72 2-74 1-93 (158)
18 2fh5_A Signal recognition part 86.7 3.5 0.00012 30.2 7.8 93 2-97 10-104 (185)
19 1vet_B P14, late endosomal/lys 66.9 26 0.00088 23.5 14.1 95 3-97 19-120 (125)
20 2j3t_D Trafficking protein par 59.9 7.8 0.00027 29.1 3.4 45 49-95 135-180 (219)
21 3vjz_A DMP19, putative unchara 59.5 4.3 0.00015 29.3 1.8 45 81-125 16-66 (166)
22 2wl8_A Peroxisomal biogenesis 26.5 1.3E+02 0.0044 20.4 5.0 43 83-125 66-108 (126)
23 3or5_A Thiol:disulfide interch 22.2 1.4E+02 0.0046 19.3 4.5 22 5-27 119-140 (165)
No 1
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=5.3e-46 Score=273.06 Aligned_cols=141 Identities=43% Similarity=0.792 Sum_probs=136.2
Q ss_pred ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 032296 2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAI 81 (143)
Q Consensus 2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~ 81 (143)
||+|++|+|++|+++++|||++.++++|+++++++++++.+|+++.||++++++++++|+++++|||+++++.++||+++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 89999999999999999999999998899999999999888877789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhhcc
Q 032296 82 LEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKM 142 (143)
Q Consensus 82 ~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~~~ 142 (143)
+++||+++++|++|||++||.+|++||+++|++||||+|+|+|++||++.|++++++++.+
T Consensus 81 le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l 141 (158)
T 1w63_Q 81 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLL 141 (158)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhh
Confidence 9999999999999999999999999999999999999999999999999999999988754
No 2
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=4e-46 Score=272.59 Aligned_cols=136 Identities=24% Similarity=0.443 Sum_probs=126.7
Q ss_pred ceEEEEEEeCCCCEEEEecCcC--CCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHH
Q 032296 2 GIRFILMVNKQGQTRLAQYYEW--LTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENEL 79 (143)
Q Consensus 2 mI~~~~iln~~G~~il~k~Y~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel 79 (143)
||+|++|+|++|+++++|||++ .+.++|+++++++|+++. ++ .+|++.++|++++||++++|||+++++.++||+
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r~--~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel 88 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-RT--DSEIALLEGLTVVYKSSIDLYFYVIGSSYENEL 88 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-SC--CCCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC--CCCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence 9999999999999999999998 577889999999999974 43 389999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-ccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhh
Q 032296 80 AILEFIHLLVETMDRHF-GNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLME 140 (143)
Q Consensus 80 ~~~e~L~~~v~~l~~~f-~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~ 140 (143)
+++++||+++++|++|| |++||++|++||++||++||||+|+|+|||||++.|++|+++.+
T Consensus 89 ~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 89 MLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 99999999999999999 89999999999999999999999999999999999999998764
No 3
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=1.4e-45 Score=266.22 Aligned_cols=142 Identities=41% Similarity=0.711 Sum_probs=136.8
Q ss_pred ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 032296 2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAI 81 (143)
Q Consensus 2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~ 81 (143)
||+|++|+|++|+++++|||++.+.++++++++++++++.+++++.||++++++++++|+++++|||+++++.++||+++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 89999999999999999999998888899999999999887766789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhhccC
Q 032296 82 LEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS 143 (143)
Q Consensus 82 ~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~~~~ 143 (143)
+++||+++++|++|||++||.+|++||+++|++||||+|+|+|++|++..+++++..+|+++
T Consensus 81 le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~~ 142 (142)
T 2vgl_S 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142 (142)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999998874
No 4
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.1e-36 Score=251.09 Aligned_cols=136 Identities=11% Similarity=0.146 Sum_probs=120.2
Q ss_pred CceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcc-c-CCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCH
Q 032296 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR-T-EQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENE 78 (143)
Q Consensus 1 mmI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~ne 78 (143)
|||+|++|+|++|+++++|||++.... ...+.+++.+.++ + +..||++++++++++|+++++|||+++++.++||
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~---~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 77 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDM---SEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACV 77 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTT---TTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred CceEEEEEECCCCCEEEEEecCCCCCh---HHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 999999999999999999999973221 1233344555443 2 4689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhh
Q 032296 79 LAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLM 139 (143)
Q Consensus 79 l~~~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~ 139 (143)
++++++||+++++|++|||++||++|++||+++|++||||+|+|+|++||++.|++++.+.
T Consensus 78 l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~ 138 (423)
T 1w63_M 78 SLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQE 138 (423)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999998765
No 5
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=3.8e-35 Score=244.34 Aligned_cols=134 Identities=13% Similarity=0.196 Sum_probs=119.8
Q ss_pred ceEEEEEEeCCCCEEEEecCcC-CCHHHHHHHHHHHHHHHhc-ccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHH
Q 032296 2 GIRFILMVNKQGQTRLAQYYEW-LTLEERRALEGEIVRKCLA-RTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENEL 79 (143)
Q Consensus 2 mI~~~~iln~~G~~il~k~Y~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel 79 (143)
||+|++|+|++|+++++|||++ .+... ...+++.+.+ ++...+|++++++++++|+++++|||+++++.++||+
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~----~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l 76 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNA----VDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAA 76 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHH----HHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhH----HHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence 8999999999999999999997 44322 2333455554 3346899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhh
Q 032296 80 AILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLM 139 (143)
Q Consensus 80 ~~~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~ 139 (143)
+++++||+++++|++|||++||++|++||+++|++||||+|+|+|++||++.|+.++.+.
T Consensus 77 ~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~ 136 (435)
T 2vgl_M 77 MVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQ 136 (435)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999998887754
No 6
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.57 E-value=0.058 Score=39.65 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=60.0
Q ss_pred ceEEEEEEeC-CCCEEEEecCcCCC-----HHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCC
Q 032296 2 GIRFILMVNK-QGQTRLAQYYEWLT-----LEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDND 75 (143)
Q Consensus 2 mI~~~~iln~-~G~~il~k~Y~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~ 75 (143)
||...+|.-. +| ++|+.++...+ ...-+.+.+.+.+++...++..+ -++.+++.+-|..-+++.++|+++.+
T Consensus 2 Mi~ya~IaR~~d~-~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~-s~~~~~y~fhy~~~~gl~~l~i~d~~ 79 (196)
T 2nut_C 2 MVLLTMIARVADG-LPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRC-TLEAGAMTFHYIIEQGVCYLVLCEAA 79 (196)
T ss_dssp CCCCEEEEETTTC-CEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEE-EEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEEEEcCCC-cEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence 4444445443 45 55566665321 11222333333344321122222 35678999889999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhhhc
Q 032296 76 ENELAILEFIHLLVETMDRHFG 97 (143)
Q Consensus 76 ~nel~~~e~L~~~v~~l~~~f~ 97 (143)
.+.-..+.||..+.+-+..-++
T Consensus 80 yp~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 80 FPKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988877665
No 7
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=96.50 E-value=0.039 Score=38.96 Aligned_cols=93 Identities=12% Similarity=0.160 Sum_probs=58.3
Q ss_pred CceEEEEEEeCCCCEEEEecCcCC-----C-HHHHHHHHHHHHHH---Hhc--ccCCCc--ceeEeCCEEE-EEEEeCcE
Q 032296 1 MGIRFILMVNKQGQTRLAQYYEWL-----T-LEERRALEGEIVRK---CLA--RTEQQC--SFVEHRNYKI-VYRRYASL 66 (143)
Q Consensus 1 mmI~~~~iln~~G~~il~k~Y~~~-----~-~~~~~~~~~~~~~~---~~~--~~~~~~--~i~~~~~~~~-vy~~~~~l 66 (143)
|||.++.|+|++|.+++.|-|... + .++.+....-++.. +.+ +..... ..+..+++++ .|..-.++
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 899999999999999999999642 2 33333222222221 111 111111 2334566664 56677789
Q ss_pred EEEEEEcCCcCHHHHHHHHHHHH-HHHHhh
Q 032296 67 FFLVGVDNDENELAILEFIHLLV-ETMDRH 95 (143)
Q Consensus 67 ~f~~~~~~~~nel~~~e~L~~~v-~~l~~~ 95 (143)
-|+++++.++++ +-++++.+. +..-+|
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 999999988765 557788877 666664
No 8
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=95.23 E-value=0.48 Score=33.03 Aligned_cols=95 Identities=7% Similarity=0.051 Sum_probs=57.9
Q ss_pred Cc-eEEEEEEeCCCCEEEEecCcCCCH---HHHHHHHHH--HHHH---Hhc--ccCCCccee---EeCCEEE-EEEEeCc
Q 032296 1 MG-IRFILMVNKQGQTRLAQYYEWLTL---EERRALEGE--IVRK---CLA--RTEQQCSFV---EHRNYKI-VYRRYAS 65 (143)
Q Consensus 1 mm-I~~~~iln~~G~~il~k~Y~~~~~---~~~~~~~~~--~~~~---~~~--~~~~~~~i~---~~~~~~~-vy~~~~~ 65 (143)
|+ |.++.|+|++|.+++.|-|.+.+. .+..++... ++.. +-. +++..+-.. .++++++ .|..-.+
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 78 999999999999999999975321 111222211 2211 111 112222222 2345553 5666778
Q ss_pred EEEEEEEcCCcCHHHHHHHHHHHHHHHHhhh
Q 032296 66 LFFLVGVDNDENELAILEFIHLLVETMDRHF 96 (143)
Q Consensus 66 l~f~~~~~~~~nel~~~e~L~~~v~~l~~~f 96 (143)
+-|+++++.. ++-.+-++++.+.++.-++.
T Consensus 83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v 112 (142)
T 2j3w_A 83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIKFA 112 (142)
T ss_dssp CEEEEEESSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCC-CcHHHHHHHHHHHHHHHHHh
Confidence 9999999863 45667788888887776665
No 9
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=95.20 E-value=0.15 Score=36.94 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHHHHHHHHHH
Q 032296 12 QGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVET 91 (143)
Q Consensus 12 ~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~~e~L~~~v~~ 91 (143)
+|.++|+.+-.... ..+...+.+.+++..+ ..-.-++.+++.+=|..-+++.++|+++.+.+--..+.||..+.+-
T Consensus 53 RG~~VLae~t~~~g--nf~~iak~ll~kl~~~--~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~e 128 (169)
T 2vx8_A 53 RGTTILAKHAWCGG--NFLEVTEQILAKIPSE--NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 128 (169)
T ss_dssp ETTEEEEEEESSCB--SHHHHHHHHHTTSCSS--CEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeccCCC--CHHHHHHHHHhhCCCC--CCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHH
Confidence 47788888644211 1122232222332211 1112356799998888889999999999999999999999999999
Q ss_pred HHhhhcc
Q 032296 92 MDRHFGN 98 (143)
Q Consensus 92 l~~~f~~ 98 (143)
+..-+++
T Consensus 129 F~~~y~~ 135 (169)
T 2vx8_A 129 FQTTYGS 135 (169)
T ss_dssp HHHHHTT
T ss_pred HHHHhhh
Confidence 9888764
No 10
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=95.16 E-value=0.48 Score=34.58 Aligned_cols=89 Identities=21% Similarity=0.295 Sum_probs=61.1
Q ss_pred CceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcc-cCC-CcceeEeCCEEEEEEEeCcEEEEEEEcCCcCH
Q 032296 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR-TEQ-QCSFVEHRNYKIVYRRYASLFFLVGVDNDENE 78 (143)
Q Consensus 1 mmI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~ne 78 (143)
|-|-.-+|- +|.++|+.|=.... .| ..+.+.++.+ ++. .---++.+++.+-|...+++.++|+++.+.+.
T Consensus 2 M~ilYa~VA--rg~~iLae~t~~~g-----nf-~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~ 73 (189)
T 4b93_A 2 MAILFAVVA--RGTTILAKHAWCGG-----NF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFER 73 (189)
T ss_dssp CSEEEEEEE--ETTEEEEEEESSEE-----CH-HHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred CceEEEEEE--eCCEEEEeCCCCCC-----CH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCH
Confidence 444433343 69999998733211 11 1223444432 221 11235789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 032296 79 LAILEFIHLLVETMDRHFG 97 (143)
Q Consensus 79 l~~~e~L~~~v~~l~~~f~ 97 (143)
-..+.||..+.+-+..-+|
T Consensus 74 r~af~fL~~i~~eF~~~~~ 92 (189)
T 4b93_A 74 SRAFSFLNEVKKRFQTTYG 92 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999988877776
No 11
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.091 Score=37.68 Aligned_cols=93 Identities=13% Similarity=0.207 Sum_probs=54.5
Q ss_pred CceEEEEEEeCCCCEEEEecCcCC-----------CHHHHHHHHHH-HHHH---Hhccc--CCCcce--eEeCCEEE-EE
Q 032296 1 MGIRFILMVNKQGQTRLAQYYEWL-----------TLEERRALEGE-IVRK---CLART--EQQCSF--VEHRNYKI-VY 60 (143)
Q Consensus 1 mmI~~~~iln~~G~~il~k~Y~~~-----------~~~~~~~~~~~-~~~~---~~~~~--~~~~~i--~~~~~~~~-vy 60 (143)
|+|.++.|+|++|..+..|-|.+. ..++..++..- ++.. +.+-+ +....+ +..+.+++ .|
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence 899999999999999999998531 12222232222 2221 11111 111222 23355554 45
Q ss_pred EEeCcEEEEEEEcCCcCHHHHHHHHHHHHH-HHHhh
Q 032296 61 RRYASLFFLVGVDNDENELAILEFIHLLVE-TMDRH 95 (143)
Q Consensus 61 ~~~~~l~f~~~~~~~~nel~~~e~L~~~v~-~l~~~ 95 (143)
..-.++-|++++|..++++ -++|+.+++ +.-+|
T Consensus 81 eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y 114 (159)
T 3cue_C 81 CTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY 114 (159)
T ss_dssp CCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred EeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence 5566899999999886654 466777775 55554
No 12
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=95.05 E-value=0.56 Score=32.77 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=65.9
Q ss_pred CceEEEEEEeCCC--CEEEEecCcC--C---CHHHHHHHHHHHHHHHhccc--CCCcceeEeCCEEEEEE-EeCcEEEEE
Q 032296 1 MGIRFILMVNKQG--QTRLAQYYEW--L---TLEERRALEGEIVRKCLART--EQQCSFVEHRNYKIVYR-RYASLFFLV 70 (143)
Q Consensus 1 mmI~~~~iln~~G--~~il~k~Y~~--~---~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~vy~-~~~~l~f~~ 70 (143)
|=|.++.|+-..+ -++|+..++- . .....+++...+.+.++.|. +..+ -++.+++.+-|. +.+++.+++
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~-sv~~~~y~fH~~~~~~gl~~l~ 83 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQ-SIEEGNYIGHVYARSEGICGVL 83 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEE-EEEETTEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceE-EEEeCCEEEEEEEecCCEEEEE
Confidence 4466776765443 5677777762 1 22223445455555665443 2222 356788887666 778999999
Q ss_pred EEcCCcCHHHHHHHHHHHHHHHHhhhcc
Q 032296 71 GVDNDENELAILEFIHLLVETMDRHFGN 98 (143)
Q Consensus 71 ~~~~~~nel~~~e~L~~~v~~l~~~f~~ 98 (143)
++|.+.+.-..+.+|+.+.+-+..-+|.
T Consensus 84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~ 111 (144)
T 3bw6_A 84 ITDKEYPVRPAYTLLNKILDEYLVAHPK 111 (144)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred EECCCCChhHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999988888776663
No 13
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=94.31 E-value=0.92 Score=31.98 Aligned_cols=92 Identities=10% Similarity=0.060 Sum_probs=64.8
Q ss_pred eEEEEEEeCCCCEEEEecCcCCCH-HHHHHHHHHHHHHHh----ccc-CC-CcceeEeCCEEEEEEEeCcEEEEEEEcCC
Q 032296 3 IRFILMVNKQGQTRLAQYYEWLTL-EERRALEGEIVRKCL----ART-EQ-QCSFVEHRNYKIVYRRYASLFFLVGVDND 75 (143)
Q Consensus 3 I~~~~iln~~G~~il~k~Y~~~~~-~~~~~~~~~~~~~~~----~~~-~~-~~~i~~~~~~~~vy~~~~~l~f~~~~~~~ 75 (143)
+.+++|-|++|-+++.-.....++ .-+..|... |..+. +-+ ++ ..-+-.++++.+|+.....+++.++++.+
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsT-f~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~ 116 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLST-FALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSS 116 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHH-HHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhh-HHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCC
Confidence 689999999999999888875433 223344444 33221 111 22 33345678999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhh
Q 032296 76 ENELAILEFIHLLVETMDRH 95 (143)
Q Consensus 76 ~nel~~~e~L~~~v~~l~~~ 95 (143)
.|--.++++=+.+...+...
T Consensus 117 aNtG~Il~Le~~L~p~l~~L 136 (143)
T 3cpt_A 117 ANTGLIVSLEKELAPLFEEL 136 (143)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHhhhHHHHHHHHHHH
Confidence 99999988766666655543
No 14
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=94.02 E-value=1.4 Score=33.13 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.5
Q ss_pred CceEEEEEEeCCCCEEEEecCc
Q 032296 1 MGIRFILMVNKQGQTRLAQYYE 22 (143)
Q Consensus 1 mmI~~~~iln~~G~~il~k~Y~ 22 (143)
|+|.+++|+|+.|..++.|-|.
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~ 22 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFT 22 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECS
T ss_pred CeeEEEEEEeCCCCEEeehhhc
Confidence 8999999999999999999997
No 15
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=93.23 E-value=1.8 Score=31.84 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=66.4
Q ss_pred CceEEEEEEeCCCC--EEEEecCcC-----CCHHHHHHHHHHHHHHHhcccCCC-cceeEeCCEEEE-EEEeCcEEEEEE
Q 032296 1 MGIRFILMVNKQGQ--TRLAQYYEW-----LTLEERRALEGEIVRKCLARTEQQ-CSFVEHRNYKIV-YRRYASLFFLVG 71 (143)
Q Consensus 1 mmI~~~~iln~~G~--~il~k~Y~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~v-y~~~~~l~f~~~ 71 (143)
|=|-++.|+-..|+ .+|+.-|+- ......+.|..-+-+.+..+.+.. ---++.+++.+- |.+.+++.++++
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 44778888876655 345666661 233344444433334455543221 123556788775 888899999999
Q ss_pred EcCCcCHHHHHHHHHHHHHHHHhhhc
Q 032296 72 VDNDENELAILEFIHLLVETMDRHFG 97 (143)
Q Consensus 72 ~~~~~nel~~~e~L~~~v~~l~~~f~ 97 (143)
++.+.+.-..+.||..+.+-+..-++
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999888877776
No 16
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=91.93 E-value=2.6 Score=30.40 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCC--CcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHHHHHHHH
Q 032296 12 QGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQ--QCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLV 89 (143)
Q Consensus 12 ~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~~e~L~~~v 89 (143)
+|.++|+.|=.... .| ..+.+.++.+-+. .---++.+++.+-|..-+++.++|+++.+.+--..+.||..+.
T Consensus 63 rg~tiLAE~t~~~g-----nf-~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~ 136 (173)
T 4afi_A 63 RGTTILAKHAWCGG-----NF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK 136 (173)
T ss_dssp ETTEEEEEEESSCC-----CH-HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCC-----CH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHH
Confidence 58899998754321 12 2344555543221 1124568999998888899999999999999999999999999
Q ss_pred HHHHhhhcc
Q 032296 90 ETMDRHFGN 98 (143)
Q Consensus 90 ~~l~~~f~~ 98 (143)
+-+..-+|.
T Consensus 137 ~eF~~~yg~ 145 (173)
T 4afi_A 137 KRFQTTYGS 145 (173)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHhch
Confidence 998887764
No 17
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=90.22 E-value=1.8 Score=30.68 Aligned_cols=72 Identities=11% Similarity=0.216 Sum_probs=45.6
Q ss_pred ceEEEEEEeCCCCEEEEec--CcCCCHHHHHHHHHHHHHH-HhcccCC---------CcceeEe-------CCEEEEEE-
Q 032296 2 GIRFILMVNKQGQTRLAQY--YEWLTLEERRALEGEIVRK-CLARTEQ---------QCSFVEH-------RNYKIVYR- 61 (143)
Q Consensus 2 mI~~~~iln~~G~~il~k~--Y~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~i~~~-------~~~~~vy~- 61 (143)
||..+.|+..+|++++.-. =+..+.....+|..++... +. +.+. .-+++.+ +++++.|.
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~-~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~ 79 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVT-RKESVANANTDGFDFNLLTINSEHKNSPSFNALFYL 79 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCC-GGGEECSGGGTTCCEEEEECC--------CEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcc-cccccccccccccceeeEeecccccCCCCeeEEEEe
Confidence 8999999999999987533 1234555556666655432 21 1111 2356666 78888776
Q ss_pred -EeCcEEEEEEEcC
Q 032296 62 -RYASLFFLVGVDN 74 (143)
Q Consensus 62 -~~~~l~f~~~~~~ 74 (143)
+...|||+++-.+
T Consensus 80 skQP~LyfVvtyae 93 (158)
T 1nrj_A 80 NKQPELYFVVTFAE 93 (158)
T ss_dssp EETTEEEEEEEESS
T ss_pred cCCCcEEEEEEecc
Confidence 6778999988854
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=86.72 E-value=3.5 Score=30.20 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=60.4
Q ss_pred ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeC--cEEEEEEEcCCcCHH
Q 032296 2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYA--SLFFLVGVDNDENEL 79 (143)
Q Consensus 2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~--~l~f~~~~~~~~nel 79 (143)
|+..+.|++..|=++-+ |.+.+. -...-...+.+.++=......+.+.++++.+=|+..+ +|.|+|+-..=-+-.
T Consensus 10 ~~D~~~IfTkGGvVLWs--~~~~~~-~~~~~IN~LIr~VlLEER~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~ 86 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWC--FQGVSD-SCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLT 86 (185)
T ss_dssp SCSEEEEEETTSBEEEE--EBTTTB-SCCCHHHHHHHHTGGGC-------CCCCCEEEEEEETTTTEEEEEEESCGGGHH
T ss_pred ceeEEEEEeCCeEEEEe--ecCCcc-cccchHHHHHHHhhhccccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccch
Confidence 78889999999988866 332210 0011244555554321111233477899999999877 588999998877778
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 032296 80 AILEFIHLLVETMDRHFG 97 (143)
Q Consensus 80 ~~~e~L~~~v~~l~~~f~ 97 (143)
.+-++|..+...+.+.|+
T Consensus 87 YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 87 YVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888887777775
No 19
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=66.92 E-value=26 Score=23.51 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=65.0
Q ss_pred eEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhc--c-----cCCCcceeEeCCEEEEEEEeCcEEEEEEEcCC
Q 032296 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLA--R-----TEQQCSFVEHRNYKIVYRRYASLFFLVGVDND 75 (143)
Q Consensus 3 I~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~ 75 (143)
+.+.++++.+|-++-+.-....+.+.--.....++....+ + .+-..-+++.++-.++-...++.++++.++.+
T Consensus 19 v~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCC
Confidence 5788999999999988777555554445555556543221 1 11233466777666655555889999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhhhc
Q 032296 76 ENELAILEFIHLLVETMDRHFG 97 (143)
Q Consensus 76 ~nel~~~e~L~~~v~~l~~~f~ 97 (143)
.+.-.+--=++++++-|..=+.
T Consensus 99 a~lGlv~~~m~~lv~~L~~~lr 120 (125)
T 1vet_B 99 VGFGMLKAKAQALVQYLEEPLT 120 (125)
T ss_dssp SCHHHHHHHHHHHHHHHHCC--
T ss_pred CChHHHHHHHHHHHHHHhhhhh
Confidence 9988888888888877665443
No 20
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=59.90 E-value=7.8 Score=29.08 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=32.3
Q ss_pred ceeEeCCEEE-EEEEeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHHhh
Q 032296 49 SFVEHRNYKI-VYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRH 95 (143)
Q Consensus 49 ~i~~~~~~~~-vy~~~~~l~f~~~~~~~~nel~~~e~L~~~v~~l~~~ 95 (143)
..+..+.+++ .|..-.++-|+++++.+++. +-++++.+.++.-+|
T Consensus 135 ~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~--ir~~l~~IyelYvd~ 180 (219)
T 2j3t_D 135 EMLETDTFKLHCYQTLTGIKFVVLADPRQAG--IDSLLRKIYEIYSDF 180 (219)
T ss_dssp SEEEESSCEEEEEECTTSCEEEEEECTTCCC--HHHHHHHHHHHHHHH
T ss_pred eEEecCceEEEEEEcCCCCEEEEEecCCchH--HHHHHHHHHHHHHHH
Confidence 3455677665 56667789999999876544 557788888777776
No 21
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=59.50 E-value=4.3 Score=29.26 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhcc-----ccHHHHHhhHHHHHHHHH-HHHhCcEEe
Q 032296 81 ILEFIHLLVETMDRHFGN-----VCELDIMFHLEKAHFMLE-EMVMNGCIV 125 (143)
Q Consensus 81 ~~e~L~~~v~~l~~~f~~-----v~e~~i~~nf~~vy~iLD-Eiid~G~~~ 125 (143)
--+||+.+++.....+|. +...+-=.+--+.|.+|| |+.++|++|
T Consensus 16 ~d~fl~~~~da~~~~i~~l~~e~m~~Ls~~Q~tLLAy~~L~~EV~~GGFvQ 66 (166)
T 3vjz_A 16 PSALLYTLVSAYLEHTAQTGDESLSCLSDDQHTLTAFCYLDSQVEEGGFVQ 66 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHcCHHHHHHHHHHHHHHHHHcCChHh
Confidence 345777777777666653 223333345567777666 677778876
No 22
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=26.47 E-value=1.3e+02 Score=20.36 Aligned_cols=43 Identities=9% Similarity=0.035 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEe
Q 032296 83 EFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIV 125 (143)
Q Consensus 83 e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~ 125 (143)
+++..|++.+.+=--+=++..-..+|..|..++.+|=+.|.|-
T Consensus 66 ~lv~~I~~~fE~~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 66 SVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHcCCCc
Confidence 3455555554431111223344578999999999999999874
No 23
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=22.17 E-value=1.4e+02 Score=19.27 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=15.2
Q ss_pred EEEEEeCCCCEEEEecCcCCCHH
Q 032296 5 FILMVNKQGQTRLAQYYEWLTLE 27 (143)
Q Consensus 5 ~~~iln~~G~~il~k~Y~~~~~~ 27 (143)
.++++|.+|+++ .++....+.+
T Consensus 119 ~~~lid~~G~i~-~~~~g~~~~~ 140 (165)
T 3or5_A 119 TSFVIDASGNVS-GVIVGPRSKA 140 (165)
T ss_dssp EEEEECTTSBEE-EEECSCCCHH
T ss_pred eEEEECCCCcEE-EEEcCCCCHH
Confidence 679999999886 4554445544
Done!