Your job contains 1 sequence.
>032297
MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPN
SLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQ
GQIIKLKCDALLKRNGSSKPGGS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032297
(143 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172154 - symbol:RPL24 "plastid ribosomal prot... 430 2.0e-40 1
TIGR_CMR|BA_0121 - symbol:BA_0121 "ribosomal protein L24"... 121 1.1e-07 1
TIGR_CMR|GSU_2846 - symbol:GSU_2846 "ribosomal protein L2... 114 6.1e-07 1
TIGR_CMR|CBU_0249 - symbol:CBU_0249 "ribosomal protein L2... 113 7.8e-07 1
TIGR_CMR|CHY_2298 - symbol:CHY_2298 "ribosomal protein L2... 108 2.6e-06 1
TIGR_CMR|DET_0485 - symbol:DET_0485 "ribosomal protein L2... 107 3.4e-06 1
TIGR_CMR|CJE_1864 - symbol:CJE_1864 "ribosomal protein L2... 106 4.3e-06 1
TIGR_CMR|SPO_0496 - symbol:SPO_0496 "ribosomal protein L2... 102 1.1e-05 1
TAIR|locus:504954880 - symbol:AT5G23535 species:3702 "Ara... 98 3.0e-05 1
GENEDB_PFALCIPARUM|PFF0245w - symbol:PFF0245w "50S riboso... 98 5.6e-05 1
UNIPROTKB|C6KSP8 - symbol:PFF0245w "Mitochondrial ribosom... 98 5.6e-05 1
TIGR_CMR|APH_0291 - symbol:APH_0291 "ribosomal protein L2... 95 6.3e-05 1
UNIPROTKB|Q9KNZ5 - symbol:rplX "50S ribosomal protein L24... 91 0.00017 1
TIGR_CMR|VC_2585 - symbol:VC_2585 "ribosomal protein L24"... 91 0.00017 1
TIGR_CMR|ECH_0420 - symbol:ECH_0420 "ribosomal protein L2... 88 0.00035 1
UNIPROTKB|P60627 - symbol:rplX "50S ribosomal protein L24... 86 0.00057 1
ZFIN|ZDB-GENE-040718-98 - symbol:mrpl24 "mitochondrial ri... 94 0.00064 1
>TAIR|locus:2172154 [details] [associations]
symbol:RPL24 "plastid ribosomal protein L24" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0015934 "large
ribosomal subunit" evidence=ISS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0032544 "plastid translation" evidence=IMP] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0009941 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:AB016879 GO:GO:0032544
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 EMBL:Y09635
EMBL:BT001990 EMBL:BT006573 EMBL:AY086810 IPI:IPI00544271
RefSeq:NP_851190.1 UniGene:At.47267 ProteinModelPortal:P92959
SMR:P92959 STRING:P92959 PaxDb:P92959 PRIDE:P92959
EnsemblPlants:AT5G54600.1 GeneID:835549 KEGG:ath:AT5G54600
GeneFarm:199 TAIR:At5g54600 eggNOG:COG0198 HOGENOM:HOG000039891
InParanoid:P92959 KO:K02895 OMA:RWERKEC PhylomeDB:P92959
ProtClustDB:CLSN2680537 Genevestigator:P92959 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 Uniprot:P92959
Length = 198
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 82/130 (63%), Positives = 100/130 (76%)
Query: 1 MAAMAALQXXXXXXXXX-XXXFFGQRLSFP-SLSPIT-VKPTDKPCLIVVRLKRWERKEC 57
MA M+ALQ F GQRL P SLS + VKP + PCL++ +LKRWERKEC
Sbjct: 1 MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60
Query: 58 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE 117
KPNSLP+LHKMHVK GDTVKVI+G DKGKIGE+TK+F HNST+++KD+NLKTKH+K REE
Sbjct: 61 KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120
Query: 118 EEQGQIIKLK 127
E GQI+K++
Sbjct: 121 GEPGQIVKIE 130
>TIGR_CMR|BA_0121 [details] [associations]
symbol:BA_0121 "ribosomal protein L24" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
ProtClustDB:PRK00004 HAMAP:MF_01326_B RefSeq:NP_842689.1
RefSeq:YP_016726.1 RefSeq:YP_026407.1 ProteinModelPortal:Q81VR9
DNASU:1086419 EnsemblBacteria:EBBACT00000008351
EnsemblBacteria:EBBACT00000018007 EnsemblBacteria:EBBACT00000023262
GeneID:1086419 GeneID:2819215 GeneID:2851558 KEGG:ban:BA_0121
KEGG:bar:GBAA_0121 KEGG:bat:BAS0121 OMA:QEAPIQA
BioCyc:BANT260799:GJAJ-132-MONOMER
BioCyc:BANT261594:GJ7F-134-MONOMER Uniprot:Q81VR9
Length = 103
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
MHVK GD V+VI G DKGK G I F + V+V+ +N+ KH K + QG II
Sbjct: 1 MHVKKGDKVQVITGKDKGKQGVILVAFPKQNRVIVEGVNIVKKHSKPSQLNPQGGII 57
>TIGR_CMR|GSU_2846 [details] [associations]
symbol:GSU_2846 "ribosomal protein L24" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR003256
PROSITE:PS01108 Pfam:PF00467 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
ProtClustDB:PRK00004 HAMAP:MF_01326_B RefSeq:NP_953889.1
ProteinModelPortal:P60740 GeneID:2686791 KEGG:gsu:GSU2846
PATRIC:22028539 OMA:LNIVKRH BioCyc:GSUL243231:GH27-2812-MONOMER
Uniprot:P60740
Length = 108
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
K H+K GDTV V+ G DK K G + ++ V+V+ +N+ +H + R E G + K
Sbjct: 5 KFHIKKGDTVSVVTGKDKSKTGTVLRILPKRDGVLVEGLNIVKRHTRARGNEPGGIVEK 63
>TIGR_CMR|CBU_0249 [details] [associations]
symbol:CBU_0249 "ribosomal protein L24" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
HOGENOM:HOG000039892 ProtClustDB:PRK00004 HAMAP:MF_01326_B
OMA:VIQAYPA RefSeq:NP_819293.1 ProteinModelPortal:Q83ER5 SMR:Q83ER5
PRIDE:Q83ER5 GeneID:1208130 KEGG:cbu:CBU_0249 PATRIC:17929191
BioCyc:CBUR227377:GJ7S-255-MONOMER Uniprot:Q83ER5
Length = 107
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKR-EEEEQGQIIK 125
+K DTV VI G DKG+ G++ KV NS ++V+ INL KHVK + EQG I++
Sbjct: 6 IKKDDTVIVITGRDKGRQGKVLKVLP-NSRLLVEGINLVKKHVKPNPNKNEQGGILE 61
>TIGR_CMR|CHY_2298 [details] [associations]
symbol:CHY_2298 "ribosomal protein L24" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR003256 PROSITE:PS01108 Pfam:PF00467
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 ProtClustDB:PRK00004 HAMAP:MF_01326_B
RefSeq:YP_361107.1 ProteinModelPortal:Q3A9S7 SMR:Q3A9S7
STRING:Q3A9S7 GeneID:3726665 KEGG:chy:CHY_2298 PATRIC:21277667
OMA:VIQAYPA BioCyc:CHYD246194:GJCN-2297-MONOMER Uniprot:Q3A9S7
Length = 107
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
K+ VK GD V VIAG DK K G+I +V + V+V+ +N+ +H + + QG I++
Sbjct: 3 KLKVKKGDMVLVIAGKDKDKKGKIVQVLPKENRVVVEGVNIVKRHTRPNPKLPQGGIVE 61
>TIGR_CMR|DET_0485 [details] [associations]
symbol:DET_0485 "ribosomal protein L24" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019843 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
ProtClustDB:PRK00004 HAMAP:MF_01326_B RefSeq:YP_181229.1
ProteinModelPortal:Q3Z970 STRING:Q3Z970 GeneID:3230244
KEGG:det:DET0485 PATRIC:21608039 OMA:IAIADPK
BioCyc:DETH243164:GJNF-485-MONOMER Uniprot:Q3Z970
Length = 103
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
M +K D V VIAG DKGK G++ F V+V+ +N+ +H + R + +Q II+
Sbjct: 1 MRLKKNDNVLVIAGKDKGKTGKVRYAFPRTDRVLVEGVNMIKRHSRARGQAKQAGIIE 58
>TIGR_CMR|CJE_1864 [details] [associations]
symbol:CJE_1864 "ribosomal protein L24" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108
Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
HAMAP:MF_01326_B RefSeq:YP_179834.1 ProteinModelPortal:Q5HSA1
SMR:Q5HSA1 STRING:Q5HSA1 GeneID:3232491 KEGG:cjr:CJE1864
PATRIC:20045560 OMA:EGSIHAS ProtClustDB:PRK12281
BioCyc:CJEJ195099:GJC0-1903-MONOMER Uniprot:Q5HSA1
Length = 77
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
K+ +K GD+VKVI G DKGK G++ V+ V+V+ + K +K E+ G I
Sbjct: 4 KLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKIAKKAIKPSEKNPNGGFI 61
>TIGR_CMR|SPO_0496 [details] [associations]
symbol:SPO_0496 "ribosomal protein L24" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
HOGENOM:HOG000039892 ProtClustDB:PRK00004 HAMAP:MF_01326_B
OMA:QEAPIQA RefSeq:YP_165758.1 ProteinModelPortal:Q5LW47
GeneID:3195436 KEGG:sil:SPO0496 PATRIC:23374253 Uniprot:Q5LW47
Length = 103
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK-LKC 128
++ GD V V+AG DKGK G IT V +V +N+ +H ++ + + G++ K L
Sbjct: 5 LRKGDKVVVLAGKDKGKEGTITSVDPKAGKAVVDGVNIAIRHTRQTQTSQGGRLPKALPI 64
Query: 129 D----ALLKRNGSS 138
D ALL +NG +
Sbjct: 65 DLSNLALLDKNGKA 78
>TAIR|locus:504954880 [details] [associations]
symbol:AT5G23535 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0015934 "large
ribosomal subunit" evidence=ISS] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AB025633 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 HOGENOM:HOG000039891 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 HAMAP:MF_01326_B OMA:VIQAYPA EMBL:BT011601
EMBL:BT012239 EMBL:AK227904 IPI:IPI00524746 RefSeq:NP_680212.1
UniGene:At.44055 ProteinModelPortal:Q9LT09 SMR:Q9LT09 STRING:Q9LT09
PaxDb:Q9LT09 PRIDE:Q9LT09 EnsemblPlants:AT5G23535.1 GeneID:832419
KEGG:ath:AT5G23535 TAIR:At5g23535 InParanoid:Q9LT09
PhylomeDB:Q9LT09 ProtClustDB:CLSN2690194 Genevestigator:Q9LT09
Uniprot:Q9LT09
Length = 159
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQG 121
GD V +I G DKG+ G I +V R + V+V+ NL KH+K + E G
Sbjct: 18 GDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGGPDHEGG 66
>GENEDB_PFALCIPARUM|PFF0245w [details] [associations]
symbol:PFF0245w "50S ribosomal subunit L24,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 GO:GO:0003735 EMBL:AL844505 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625
InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 HAMAP:MF_01326_B RefSeq:XP_966040.1
ProteinModelPortal:C6KSP8 EnsemblProtists:PFF0245w:mRNA
GeneID:3885712 KEGG:pfa:PFF0245w EuPathDB:PlasmoDB:PF3D7_0605000
HOGENOM:HOG000281435 OMA:FEEEINS ProtClustDB:CLSZ2432297
Uniprot:C6KSP8
Length = 194
Score = 98 (39.6 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 55 KECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKK 114
K KP ++ + K ++ GD VKVI+G DKGKIGE+ + + V VK N++ V
Sbjct: 33 KIIKPRNIIKMWK--IRKGDEVKVISGKDKGKIGEVLSCDKFRNMVKVKGCNMRKLFVDN 90
Query: 115 R 115
+
Sbjct: 91 K 91
>UNIPROTKB|C6KSP8 [details] [associations]
symbol:PFF0245w "Mitochondrial ribosomal protein L24,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 GO:GO:0003735 EMBL:AL844505 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625
InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 HAMAP:MF_01326_B RefSeq:XP_966040.1
ProteinModelPortal:C6KSP8 EnsemblProtists:PFF0245w:mRNA
GeneID:3885712 KEGG:pfa:PFF0245w EuPathDB:PlasmoDB:PF3D7_0605000
HOGENOM:HOG000281435 OMA:FEEEINS ProtClustDB:CLSZ2432297
Uniprot:C6KSP8
Length = 194
Score = 98 (39.6 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 55 KECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKK 114
K KP ++ + K ++ GD VKVI+G DKGKIGE+ + + V VK N++ V
Sbjct: 33 KIIKPRNIIKMWK--IRKGDEVKVISGKDKGKIGEVLSCDKFRNMVKVKGCNMRKLFVDN 90
Query: 115 R 115
+
Sbjct: 91 K 91
>TIGR_CMR|APH_0291 [details] [associations]
symbol:APH_0291 "ribosomal protein L24" species:212042
"Anaplasma phagocytophilum HZ" [GO:0000315 "organellar large
ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108
Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079 RefSeq:YP_504903.1
ProteinModelPortal:Q2GL48 STRING:Q2GL48 GeneID:3931200
KEGG:aph:APH_0291 PATRIC:20949156 HOGENOM:HOG000039892 OMA:DINIVTK
ProtClustDB:PRK00004 BioCyc:APHA212042:GHPM-321-MONOMER
HAMAP:MF_01326_B Uniprot:Q2GL48
Length = 104
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK--DINLKTKHVKKREEEEQG 121
+ +GD V VI G DKGK+G++ K+ R V+ K + L K VK + E G
Sbjct: 4 IVSGDDVIVITGSDKGKVGKVVKILRKGGRVLAKVASVALCRKSVKPSKNREGG 57
>UNIPROTKB|Q9KNZ5 [details] [associations]
symbol:rplX "50S ribosomal protein L24" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR003256 InterPro:IPR005825
PROSITE:PS01108 Pfam:PF00467 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198
KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079 ProtClustDB:PRK00004
HAMAP:MF_01326_B OMA:QEAPIQA PIR:C82058 RefSeq:NP_232213.1
ProteinModelPortal:Q9KNZ5 SMR:Q9KNZ5 PRIDE:Q9KNZ5 DNASU:2615602
GeneID:2615602 KEGG:vch:VC2585 PATRIC:20084196 Uniprot:Q9KNZ5
Length = 105
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVK 113
++ D V V+AG DKGK G++TKV V+V+ INL KH K
Sbjct: 5 IRQNDEVIVLAGKDKGKKGKVTKVLA-TGKVIVEGINLVKKHQK 47
>TIGR_CMR|VC_2585 [details] [associations]
symbol:VC_2585 "ribosomal protein L24" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 KO:K02895 PANTHER:PTHR12903 TIGRFAMs:TIGR01079
ProtClustDB:PRK00004 HAMAP:MF_01326_B OMA:QEAPIQA PIR:C82058
RefSeq:NP_232213.1 ProteinModelPortal:Q9KNZ5 SMR:Q9KNZ5
PRIDE:Q9KNZ5 DNASU:2615602 GeneID:2615602 KEGG:vch:VC2585
PATRIC:20084196 Uniprot:Q9KNZ5
Length = 105
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVK 113
++ D V V+AG DKGK G++TKV V+V+ INL KH K
Sbjct: 5 IRQNDEVIVLAGKDKGKKGKVTKVLA-TGKVIVEGINLVKKHQK 47
>TIGR_CMR|ECH_0420 [details] [associations]
symbol:ECH_0420 "ribosomal protein L24" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0000315 "organellar large
ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108
Pfam:PF00467 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30
InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0198 KO:K02895
PANTHER:PTHR12903 TIGRFAMs:TIGR01079 HOGENOM:HOG000039892
ProtClustDB:PRK00004 HAMAP:MF_01326_B OMA:VIQAYPA
RefSeq:YP_507238.1 ProteinModelPortal:Q2GH45 STRING:Q2GH45
GeneID:3927966 KEGG:ech:ECH_0420 PATRIC:20576317
BioCyc:ECHA205920:GJNR-421-MONOMER Uniprot:Q2GH45
Length = 109
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLKTKHVKKREEEEQG 121
M + AGD V VI+G DKGK+G++ KV + S +V +N+ K VK ++ + G
Sbjct: 3 MKIIAGDDVIVISGKDKGKMGKVIKVLKKKHCGKDVSFAIVSGVNVCRKSVKATQKSDGG 62
Query: 122 QI 123
I
Sbjct: 63 II 64
>UNIPROTKB|P60627 [details] [associations]
symbol:rplX "50S ribosomal protein L24" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR003256
InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 GO:GO:0005840 EMBL:BX842574
GO:GO:0003735 GO:GO:0019843 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 HOGENOM:HOG000039891 KO:K02895 PANTHER:PTHR12903
TIGRFAMs:TIGR01079 ProtClustDB:PRK00004 HAMAP:MF_01326_B
OMA:VIQAYPA PIR:F70643 RefSeq:NP_215229.1 RefSeq:NP_335160.1
RefSeq:YP_006514059.1 ProteinModelPortal:P60627 SMR:P60627
PRIDE:P60627 EnsemblBacteria:EBMYCT00000000150
EnsemblBacteria:EBMYCT00000071486 GeneID:13318604 GeneID:888421
GeneID:926033 KEGG:mtc:MT0741.1 KEGG:mtu:Rv0715 KEGG:mtv:RVBD_0715
PATRIC:18123363 TubercuList:Rv0715 Uniprot:P60627
Length = 105
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKH 111
M V GDTV VI+G DKG G++ + + + V+V+ +N KH
Sbjct: 1 MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKH 44
>ZFIN|ZDB-GENE-040718-98 [details] [associations]
symbol:mrpl24 "mitochondrial ribosomal protein L24"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR003256 InterPro:IPR005825 PROSITE:PS01108 Pfam:PF00467
ZFIN:ZDB-GENE-040718-98 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:BX927401 Gene3D:2.30.30.30 InterPro:IPR014722
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0198 PANTHER:PTHR12903 TIGRFAMs:TIGR01079 CTD:79590
GeneTree:ENSGT00390000014542 HOGENOM:HOG000031326
HOVERGEN:HBG093899 OMA:NTHYRYV OrthoDB:EOG4KD6MZ EMBL:BC076182
IPI:IPI00492356 RefSeq:NP_001002401.1 UniGene:Dr.9429 HSSP:Q9RXJ1
ProteinModelPortal:Q6DH02 STRING:Q6DH02 PRIDE:Q6DH02
Ensembl:ENSDART00000010862 GeneID:436674 KEGG:dre:436674
InParanoid:A3KQS2 NextBio:20831117 Bgee:Q6DH02 Uniprot:Q6DH02
Length = 216
Score = 94 (38.1 bits), Expect = 0.00064, P = 0.00064
Identities = 28/97 (28%), Positives = 53/97 (54%)
Query: 39 TDKPCLIVVR-LKRWERKECKPNSLPVLHK-MHVKAGDTVKVIAGCDKGKIGEITKVFRH 96
T++P I R L ++ K P+ ++ V GDTV+V++G +KGK G++ +V R
Sbjct: 23 TNRPWTIAARRLNPPGKRRRKVFVEPIANEDWPVVRGDTVEVLSGKEKGKQGKVAQVIRA 82
Query: 97 NSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLK 133
+ V+++ +N ++V R + +G + + LLK
Sbjct: 83 RNWVILEGLNTHYRYVG-RSGDYRGTYLASEAPLLLK 118
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 143 131 0.00091 102 3 11 22 0.40 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 566 (60 KB)
Total size of DFA: 130 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.46u 0.13s 14.59t Elapsed: 00:00:01
Total cpu time: 14.46u 0.13s 14.59t Elapsed: 00:00:01
Start: Sat May 11 00:34:34 2013 End: Sat May 11 00:34:35 2013