BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032297
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02764|RK24_TOBAC 50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum
GN=RPL24 PE=1 SV=1
Length = 187
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 99/125 (79%), Gaps = 3/125 (2%)
Query: 4 MAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLP 63
MAALQSS LS SFFGQR S P P VK T+ PCLI +LKRWERKECKPNSLP
Sbjct: 1 MAALQSSFAGLS---TSFFGQRFSPPLSLPPLVKSTEGPCLIQAKLKRWERKECKPNSLP 57
Query: 64 VLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
VLHKMHVK GDTVK+I+G DKGK+GEIT++ +HNS V+VKD+NLKTKHVK R E+E GQI
Sbjct: 58 VLHKMHVKLGDTVKIISGHDKGKVGEITEIIKHNSKVVVKDVNLKTKHVKSRSEDEPGQI 117
Query: 124 IKLKC 128
+K++
Sbjct: 118 VKIEA 122
>sp|P92959|RK24_ARATH 50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana
GN=RPL24 PE=2 SV=2
Length = 198
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 92/108 (85%), Gaps = 2/108 (1%)
Query: 23 GQRLSFP-SLSPIT-VKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIA 80
GQRL P SLS + VKP + PCL++ +LKRWERKECKPNSLP+LHKMHVK GDTVKVI+
Sbjct: 24 GQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKECKPNSLPILHKMHVKFGDTVKVIS 83
Query: 81 GCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKC 128
G DKGKIGE+TK+F HNST+++KD+NLKTKH+K REE E GQI+K++
Sbjct: 84 GRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEA 131
>sp|P11893|RK24_PEA 50S ribosomal protein L24, chloroplastic OS=Pisum sativum GN=RPL24
PE=2 SV=1
Length = 194
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 111/127 (87%), Gaps = 1/127 (0%)
Query: 3 AMAALQSSMTSLSISSNSFFGQRLSFPSLSP-ITVKPTDKPCLIVVRLKRWERKECKPNS 61
AMA+LQSSM+SLS+SSNSF GQ LS +LSP + KPT+K CLIV++LKRWERKECKPNS
Sbjct: 5 AMASLQSSMSSLSLSSNSFLGQPLSPITLSPFLQGKPTEKKCLIVMKLKRWERKECKPNS 64
Query: 62 LPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQG 121
LPVLHK+HVK GDTVKVI+G +KG+IGEITK+F+HNS+V+VKDINLKTKHVK +E E G
Sbjct: 65 LPVLHKLHVKVGDTVKVISGHEKGQIGEITKIFKHNSSVIVKDINLKTKHVKSNQEGEPG 124
Query: 122 QIIKLKC 128
QI K++
Sbjct: 125 QINKVEA 131
>sp|P27683|RK24_SPIOL 50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea
GN=RPL24 PE=1 SV=1
Length = 191
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 89/107 (83%), Gaps = 2/107 (1%)
Query: 23 GQRLSFPSLSPITVKPT-DKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAG 81
GQRL FPS + + VK PCLIV+R+KRWERK+CKPNSLP LHK HVK GDTVKVI+G
Sbjct: 22 GQRL-FPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISG 80
Query: 82 CDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKC 128
+KGKIGEI+K+ +HNSTV++KD+N KTKHVK +EE EQGQIIK++
Sbjct: 81 GEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEA 127
>sp|Q8DMM1|RL24_THEEB 50S ribosomal protein L24 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rplX PE=3 SV=1
Length = 117
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%)
Query: 58 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE 117
K N PV ++MHVK GDTV+VIAG DK K+GE+ VF S V+VK +NLKTKH+K R+E
Sbjct: 5 KANKKPVRYRMHVKKGDTVQVIAGSDKAKVGEVLAVFPKTSQVIVKGVNLKTKHLKPRQE 64
Query: 118 EEQGQII 124
E GQII
Sbjct: 65 GESGQII 71
>sp|B1XJS8|RL24_SYNP2 50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rplX PE=3 SV=1
Length = 116
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%)
Query: 58 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE 117
+ +S P HKMHVK GDTV+VI+G DKGK+GE+ K +S V+VKD+N++TKHVK ++E
Sbjct: 4 RKSSTPTRHKMHVKTGDTVQVISGRDKGKVGEVIKTLPKSSKVVVKDVNIRTKHVKPQQE 63
Query: 118 EEQGQI 123
E GQI
Sbjct: 64 GESGQI 69
>sp|O24700|RL24_SYNP6 50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rplX PE=3 SV=1
Length = 113
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 63 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQ 122
PV H +HVK GDTV+VIAG DKG +GE+ +VF S V+VK +NL+TKHVK R+E E GQ
Sbjct: 6 PVRHSVHVKKGDTVQVIAGKDKGTVGEVLQVFPKTSRVLVKGVNLRTKHVKPRQEGESGQ 65
Query: 123 II 124
I+
Sbjct: 66 IV 67
>sp|Q31L18|RL24_SYNE7 50S ribosomal protein L24 OS=Synechococcus elongatus (strain PCC
7942) GN=rplX PE=3 SV=1
Length = 113
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 63 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQ 122
PV H +HVK GDTV+VIAG DKG +GE+ +VF S V+VK +NL+TKHVK R+E E GQ
Sbjct: 6 PVRHSVHVKKGDTVQVIAGKDKGTVGEVLQVFPKTSRVLVKGVNLRTKHVKPRQEGESGQ 65
Query: 123 II 124
I+
Sbjct: 66 IV 67
>sp|Q3MFB0|RL24_ANAVT 50S ribosomal protein L24 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rplX PE=3 SV=1
Length = 117
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 50/67 (74%)
Query: 58 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE 117
K ++ P HK+HVK GDTV+VIAG DKGK+GE+ K S V+VK +N+KTKHVK ++E
Sbjct: 4 KKDTTPKFHKLHVKTGDTVQVIAGKDKGKVGEVIKALPQLSKVIVKGVNIKTKHVKPQQE 63
Query: 118 EEQGQII 124
E G+I+
Sbjct: 64 GESGRIV 70
>sp|B2ITP4|RL24_NOSP7 50S ribosomal protein L24 OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=rplX PE=3 SV=1
Length = 117
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 64 VLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
V HKMHVK GDTV+VIAG DKGKIGEI + S V+VK +N+KTKHVK ++E E G+I
Sbjct: 10 VFHKMHVKTGDTVQVIAGKDKGKIGEIVQALPQLSKVIVKGVNIKTKHVKPQQEGESGRI 69
Query: 124 I 124
+
Sbjct: 70 V 70
>sp|B0JHZ2|RL24_MICAN 50S ribosomal protein L24 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplX PE=3 SV=1
Length = 117
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%)
Query: 63 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQ 122
P KMHVK GD V+VIAG DKGK+GEI + STV+VK +N++TKH K ++E E GQ
Sbjct: 10 PQRQKMHVKKGDVVQVIAGSDKGKVGEILRALPQESTVVVKGVNIRTKHTKPQQEGESGQ 69
Query: 123 IIKLKC 128
I+ +
Sbjct: 70 IVTYEA 75
>sp|Q110B8|RL24_TRIEI 50S ribosomal protein L24 OS=Trichodesmium erythraeum (strain
IMS101) GN=rplX PE=3 SV=1
Length = 122
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 49/62 (79%)
Query: 63 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQ 122
P+ +K+HVK GDTV++IAG DKGK+GE+ KV S V+VKD+N+ TKHVK ++E E G+
Sbjct: 15 PIRYKVHVKKGDTVQIIAGKDKGKVGEVLKVLPKVSKVIVKDVNIITKHVKPQQEGESGK 74
Query: 123 II 124
I+
Sbjct: 75 IV 76
>sp|A6MW12|RK24_RHDSA 50S ribosomal protein L24, chloroplastic OS=Rhodomonas salina
GN=rpl24 PE=3 SV=1
Length = 102
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 49/61 (80%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLK 127
MHVK GDTVK++ G DKGKIGEITK+ + ++ V+V+DIN+K KHVK R+E E G+I++ +
Sbjct: 1 MHVKQGDTVKILTGKDKGKIGEITKIIKGSNQVVVQDINVKKKHVKPRKEGEIGKILQFE 60
Query: 128 C 128
Sbjct: 61 A 61
>sp|B1WQS1|RL24_CYAA5 50S ribosomal protein L24 OS=Cyanothece sp. (strain ATCC 51142)
GN=rplX PE=3 SV=1
Length = 115
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 63 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQ 122
P +KMHVK GDT++VI+G DKGK+GE+ K S V+VK +N+KTKHVK ++E E GQ
Sbjct: 7 PQRYKMHVKTGDTIQVISGRDKGKVGEVLKTIPTTSEVVVKGVNVKTKHVKPQQEGESGQ 66
Query: 123 IIKLKC 128
I +
Sbjct: 67 IATFEA 72
>sp|P73309|RL24_SYNY3 50S ribosomal protein L24 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rplX PE=3 SV=1
Length = 115
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
KMHVK GDT++VI+G DKGK+GE+ + +S V+VK +N++TKHVK R+E E GQI
Sbjct: 12 KMHVKKGDTIQVISGKDKGKVGEVLRTIPSHSQVVVKGVNIRTKHVKPRQEGESGQI 68
>sp|B0C1E4|RL24_ACAM1 50S ribosomal protein L24 OS=Acaryochloris marina (strain MBIC
11017) GN=rplX PE=3 SV=1
Length = 115
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 43/58 (74%)
Query: 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
+KMHVK GDTV+VIAG DK K+GE+ V S V+V+ +N+KTKHVK R E E GQI
Sbjct: 11 YKMHVKKGDTVQVIAGKDKAKVGEVIDVLPKLSQVVVEGVNMKTKHVKPRSESESGQI 68
>sp|Q6B8W4|RK24_GRATL 50S ribosomal protein L24, chloroplastic OS=Gracilaria
tenuistipitata var. liui GN=rpl24 PE=3 SV=1
Length = 92
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 48/60 (80%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKL 126
KMHVK G+TV++I+G +KGKIG+I KV +S V++ ++N+ TKH+K ++E + GQII++
Sbjct: 9 KMHVKRGETVQIISGREKGKIGKIIKVLPKSSQVIIDNLNIATKHLKAQKEGDSGQIIRI 68
>sp|Q8YPJ0|RL24_NOSS1 50S ribosomal protein L24 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rplX PE=3 SV=2
Length = 149
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 58 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKH-VKKRE 116
K ++ P HK+HVK GDTV++IAG DKGK+GE+ K S V+VK +N+KTK + ++
Sbjct: 2 KKDTTPKFHKLHVKTGDTVQIIAGKDKGKVGEVIKALPQLSKVVVKGVNIKTKQIIAGKD 61
Query: 117 EEEQGQIIK 125
+ + G++IK
Sbjct: 62 KGKVGEVIK 70
>sp|A0T0Y4|RK24_THAPS 50S ribosomal protein L24, chloroplastic OS=Thalassiosira
pseudonana GN=rpl24 PE=3 SV=1
Length = 77
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 62 LPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQG 121
+P +HVK GD VK+I+G DK K GE+TK++R+ ++VK IN K KH+K E + G
Sbjct: 1 MPKGKNLHVKIGDNVKIISGFDKNKTGEVTKIYRNTGKILVKGINFKFKHIKPNTESDVG 60
Query: 122 QI 123
+I
Sbjct: 61 EI 62
>sp|A5GVX1|RL24_SYNR3 50S ribosomal protein L24 OS=Synechococcus sp. (strain RCC307)
GN=rplX PE=3 SV=1
Length = 113
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 63 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQ 122
P KM ++ GDTV+VIAG DKGK GE+ + + V+V+ +NL+T+HVK +E E G+
Sbjct: 6 PTRTKMRIRKGDTVQVIAGKDKGKTGEVLRTLPWENRVVVQGVNLRTRHVKPAQEGESGR 65
Query: 123 II 124
I+
Sbjct: 66 IV 67
>sp|Q2JIL6|RL24_SYNJB 50S ribosomal protein L24 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rplX PE=3 SV=1
Length = 132
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 60 NSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEE 119
NSL +KM +K GDTV+VI+G DKGKIGE+ +VF + V+V+ +N+ T H K + E E
Sbjct: 24 NSL--RYKMRIKQGDTVQVISGDDKGKIGEVLRVFPERNMVLVEGVNIVTYHRKPQREGE 81
Query: 120 QGQI 123
G+I
Sbjct: 82 SGRI 85
>sp|Q7V9X3|RL24_PROMA 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rplX PE=3 SV=1
Length = 118
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 56 ECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKR 115
+ K SLP+ KM ++ GDTV+VI G +KGK GE+ K + V+V+ INL+T+HVK
Sbjct: 6 QTKKASLPI--KMRIRKGDTVQVINGKEKGKTGEVLKTLPIENRVIVQGINLRTRHVKPT 63
Query: 116 EEEEQGQII 124
+E E G+I+
Sbjct: 64 QEGESGRIV 72
>sp|A5GIT4|RL24_SYNPW 50S ribosomal protein L24 OS=Synechococcus sp. (strain WH7803)
GN=rplX PE=3 SV=1
Length = 118
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM ++ GDTV+VIAG DKGK GE+ + + + V+V+ +N++T+HVK +E E G+I+
Sbjct: 15 KMRLRKGDTVQVIAGKDKGKTGEVLRTLPNENRVIVEGVNMRTRHVKPTQEGESGRIV 72
>sp|Q2JQN1|RL24_SYNJA 50S ribosomal protein L24 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rplX PE=3 SV=1
Length = 132
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 60 NSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEE 119
NSL +KM +K GDTV+VI+G DKGKIGE+ +VF + V+V+ +N+ T H K + E E
Sbjct: 24 NSLR--YKMRIKKGDTVQVISGDDKGKIGEVLQVFPERNMVLVEGVNIVTYHRKPQREGE 81
Query: 120 QGQI 123
G+I
Sbjct: 82 SGRI 85
>sp|Q7NEG3|RL24_GLOVI 50S ribosomal protein L24 OS=Gloeobacter violaceus (strain PCC
7421) GN=rplX PE=3 SV=1
Length = 116
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
HK HVK GDTV+VI+G DKGK+G++++V V+V+ +N++TKHVK + ++QGQ ++
Sbjct: 12 HKFHVKKGDTVQVISGKDKGKVGKVSEVLPTAGKVIVEGVNMQTKHVKP-QGDQQGQTLR 70
>sp|P49560|RK24_ODOSI 50S ribosomal protein L24, chloroplastic OS=Odontella sinensis
GN=rpl24 PE=3 SV=1
Length = 77
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
K+HVK GD VK+I G DK KIG+++K+ R+ ++VK IN K KH+K E E G+I
Sbjct: 6 KIHVKIGDNVKIITGFDKNKIGKVSKIDRNTGKIIVKGINFKFKHIKPNAENEVGEI 62
>sp|Q318J5|RL24_PROM9 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT
9312) GN=rplX PE=3 SV=1
Length = 118
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM +K GD VKVI G DKGK GE+ K + V+VK INL+TKHVK +E E G+I+
Sbjct: 15 KMRIKTGDLVKVINGKDKGKTGEVLKTIPLENRVVVKGINLRTKHVKPTQEGETGRIL 72
>sp|A2BTC6|RL24_PROMS 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain
AS9601) GN=rplX PE=3 SV=1
Length = 118
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM +K GD VKVI G DKGK GE+ K + V+VK INL+TKHVK +E E G+I+
Sbjct: 15 KMRIKTGDLVKVINGKDKGKTGEVLKTIPLENRVVVKGINLRTKHVKPTQEGETGRIL 72
>sp|Q46IS0|RL24_PROMT 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain
NATL2A) GN=rplX PE=3 SV=1
Length = 118
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
KM ++ GDTV+VI+G DKGK GE+ K + + V+V+ IN +TKHVK +E E G+I
Sbjct: 15 KMKIRKGDTVQVISGKDKGKTGEVLKTLPYENRVLVQGINQRTKHVKPSQEGETGRI 71
>sp|A2C4Y8|RL24_PROM1 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain
NATL1A) GN=rplX PE=3 SV=1
Length = 118
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
KM ++ GDTV+VI+G DKGK GE+ K + + V+V+ IN +TKHVK +E E G+I
Sbjct: 15 KMKIRKGDTVQVISGKDKGKTGEVLKTLPYENRVLVQGINQRTKHVKPSQEGETGRI 71
>sp|O46905|RK24_GUITH 50S ribosomal protein L24, chloroplastic OS=Guillardia theta
GN=rpl24 PE=3 SV=1
Length = 101
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
M +K GD V+VIAG KG+I E+ KV R ++++++K+IN+K KHVK ++E E GQI
Sbjct: 1 MTIKQGDKVQVIAGSYKGEITEVLKVIRKSNSLILKNINIKNKHVKPKKEGEVGQI 56
>sp|Q0ID16|RL24_SYNS3 50S ribosomal protein L24 OS=Synechococcus sp. (strain CC9311)
GN=rplX PE=3 SV=1
Length = 103
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
M ++ GDTV+VIAG DKGK GE+ + + + V+V+ +N++T+HVK +E E G+I+
Sbjct: 1 MRLRKGDTVQVIAGKDKGKTGEVLRTLPNENRVIVEGLNMRTRHVKPTQEGETGRIV 57
>sp|A3PF36|RL24_PROM0 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT
9301) GN=rplX PE=3 SV=1
Length = 118
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM +K GD VKVI G +KGK GE+ K + V+VK INL+TKHVK +E E G+I+
Sbjct: 15 KMRIKTGDLVKVINGKEKGKTGEVLKTIPLENRVVVKGINLRTKHVKPTQEGETGRIL 72
>sp|A2BYS5|RL24_PROM5 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT
9515) GN=rplX PE=3 SV=1
Length = 118
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM +K GD VKVI G +KGK GE+ K + V+VK INL+TKHVK +E E G+I+
Sbjct: 15 KMRIKTGDLVKVINGKEKGKTGEVLKTIPLENRVVVKGINLRTKHVKPTQEGESGRIL 72
>sp|A8G750|RL24_PROM2 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT
9215) GN=rplX PE=3 SV=1
Length = 118
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM +K GD VKVI G +KGK GE+ K + V+VK INL+TKHVK +E E G+I+
Sbjct: 15 KMRIKTGDLVKVINGKEKGKTGEVLKTIPLENKVVVKGINLRTKHVKPTQEGETGRIL 72
>sp|Q7UZV5|RL24_PROMP 50S ribosomal protein L24 OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rplX PE=3 SV=1
Length = 118
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM +K GD VKVI G +KGK GE+ K + V+VK +NL+TKHVK +E E G+I+
Sbjct: 15 KMRIKTGDLVKVINGKEKGKTGEVLKTIPLENRVVVKGVNLRTKHVKPSQEGESGRIL 72
>sp|A0PXV7|RL24_CLONN 50S ribosomal protein L24 OS=Clostridium novyi (strain NT) GN=rplX
PE=3 SV=1
Length = 105
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 65 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
+ K+HV+ D V VI+G DKGK+ E+ V+ S V+VKD N+ TKHVK E QG I+
Sbjct: 1 MAKVHVRRTDKVVVISGKDKGKVSEVLAVYPKTSKVLVKDANVVTKHVKPNRENMQGGIV 60
Query: 125 K 125
K
Sbjct: 61 K 61
>sp|Q7U4I9|RL24_SYNPX 50S ribosomal protein L24 OS=Synechococcus sp. (strain WH8102)
GN=rplX PE=3 SV=1
Length = 118
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM ++ GDTV+VIAG DKGK GE+ + + + ++V+ +N++T+H K +E E G+I+
Sbjct: 15 KMRIRKGDTVQVIAGKDKGKTGEVLRTLPNENRLIVEGVNMRTRHEKPTQEGETGRIV 72
>sp|Q1XDI5|RK24_PORYE 50S ribosomal protein L24, chloroplastic OS=Porphyra yezoensis
GN=rpl24 PE=3 SV=1
Length = 116
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKL 126
K+ +K GD V+VI+G DK K GEI + + V+VK INLK KH K ++E E G+IIK
Sbjct: 13 KIKLKKGDLVQVISGSDKTKTGEIIAIIYKTNKVIVKGINLKVKHKKPQQEGETGEIIKF 72
Query: 127 KC 128
+
Sbjct: 73 EA 74
>sp|Q3API4|RL24_CHLCH 50S ribosomal protein L24 OS=Chlorobium chlorochromatii (strain
CaD3) GN=rplX PE=3 SV=1
Length = 89
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 44/59 (74%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
K+HVK DTV VI+G DKGK+G++ KVF S V+V+ +N++ +H++ + + QG+II+
Sbjct: 18 KLHVKKNDTVTVISGNDKGKMGKVLKVFPVASRVIVEGVNIRKRHMRPLQGQTQGRIIE 76
>sp|C3KVP0|RL24_CLOB6 50S ribosomal protein L24 OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=rplX PE=3 SV=1
Length = 105
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 65 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
+ K+HV+ DTV VI+G DKGKIGE+ V V+VKD+N+ TKH K E QG II
Sbjct: 1 MSKIHVRKKDTVVVISGKDKGKIGEVLSVLPKKGKVIVKDVNVVTKHQKPNRENMQGGII 60
>sp|B1KSL4|RL24_CLOBM 50S ribosomal protein L24 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=rplX PE=3 SV=1
Length = 105
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 65 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
+ K+HV+ DTV VI+G DKGKIGE+ V V+VKD+N+ TKH K E QG II
Sbjct: 1 MSKIHVRKKDTVVVISGKDKGKIGEVLSVLPKKGKVIVKDVNVVTKHQKPNRENMQGGII 60
>sp|A7GJ63|RL24_CLOBL 50S ribosomal protein L24 OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=rplX PE=3 SV=1
Length = 105
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 65 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
+ K+HV+ DTV VI+G DKGKIGE+ V V+VKD+N+ TKH K E QG II
Sbjct: 1 MSKIHVRKKDTVVVISGKDKGKIGEVLSVLPKKGKVIVKDVNVVTKHQKPNRENMQGGII 60
>sp|B1IGE3|RL24_CLOBK 50S ribosomal protein L24 OS=Clostridium botulinum (strain Okra /
Type B1) GN=rplX PE=3 SV=1
Length = 105
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 65 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
+ K+HV+ DTV VI+G DKGKIGE+ V V+VKD+N+ TKH K E QG II
Sbjct: 1 MSKIHVRKKDTVVVISGKDKGKIGEVLSVLPKKGKVIVKDVNVVTKHQKPNRENMQGGII 60
>sp|Q3AW82|RL24_SYNS9 50S ribosomal protein L24 OS=Synechococcus sp. (strain CC9902)
GN=rplX PE=3 SV=1
Length = 118
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 57 CKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKRE 116
KP ++ + KM ++ GDTV+VIAG DKGK G + + + + V+V+ +N++T+H K +
Sbjct: 6 SKPKAVERI-KMRIRKGDTVQVIAGKDKGKTGAVLRTLPNENRVIVEGVNMRTRHEKPSQ 64
Query: 117 EEEQGQII 124
E E G+I+
Sbjct: 65 EGESGRIV 72
>sp|A2CC38|RL24_PROM3 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT
9303) GN=rplX PE=3 SV=1
Length = 118
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM + GDTV+VI G DKGK GE+ + + V+V+ +N++T+HVK +E E G+I+
Sbjct: 15 KMRIHKGDTVQVITGKDKGKTGEVLRTLPIENRVIVQGVNIRTRHVKPTQEGESGRIV 72
>sp|B3EP50|RL24_CHLPB 50S ribosomal protein L24 OS=Chlorobium phaeobacteroides (strain
BS1) GN=rplX PE=3 SV=1
Length = 80
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
K+HV+ DTV VIAG DKGK G++ +VF + V+V+ +N++ +HV+ + QG II+
Sbjct: 9 KLHVRKNDTVLVIAGNDKGKTGKVLRVFPQKNRVIVEGVNIRKRHVRPTQSHPQGAIIE 67
>sp|Q7V534|RL24_PROMM 50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT
9313) GN=rplX PE=3 SV=1
Length = 118
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
KM + GDTV+VI G DKGK GE+ + + V+V+ +N++T+HVK +E E G+I+
Sbjct: 15 KMRIHKGDTVQVITGKDKGKTGEVLRTLPIENRVIVQGVNIRTRHVKPTQEGESGRIV 72
>sp|Q8ETX2|RL24_OCEIH 50S ribosomal protein L24 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rplX PE=3
SV=1
Length = 103
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLK 127
MHVK GD VKV++G D+GK G + + F N V+V+ +N+ KH K +E QG I+ ++
Sbjct: 1 MHVKKGDKVKVLSGKDRGKEGTVLEAFPKNERVLVEGVNMVQKHAKPSQENPQGGILNIE 60
Query: 128 C 128
Sbjct: 61 A 61
>sp|Q9Z9K3|RL24_BACHD 50S ribosomal protein L24 OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=rplX PE=3 SV=1
Length = 103
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLK 127
MHVK GDTVKVI+G DKGK G I + + V+V+ +N+ KH K +E QG I+ ++
Sbjct: 1 MHVKKGDTVKVISGKDKGKQGVILEAYPKKDRVLVEGVNIVKKHAKPSQENPQGGILNME 60
Query: 128 C 128
Sbjct: 61 A 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,583,167
Number of Sequences: 539616
Number of extensions: 1895562
Number of successful extensions: 6410
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 5728
Number of HSP's gapped (non-prelim): 786
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)