Query 032297
Match_columns 143
No_of_seqs 126 out of 1166
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 19:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_W Ribosomal protein L24; 100.0 2.8E-53 9.5E-58 340.6 -1.8 139 1-140 1-139 (191)
2 3v2d_Y 50S ribosomal protein L 99.9 1.7E-26 5.7E-31 171.5 7.9 75 66-140 3-77 (110)
3 2zjr_R 50S ribosomal protein L 99.9 1.9E-26 6.7E-31 172.0 5.1 79 62-140 8-86 (115)
4 3r8s_U 50S ribosomal protein L 99.9 1.7E-25 5.8E-30 164.1 7.5 72 68-140 2-74 (102)
5 2ftc_N Mitochondrial ribosomal 99.9 5E-24 1.7E-28 154.8 7.3 67 73-140 1-67 (96)
6 1vq8_T 50S ribosomal protein L 99.8 5.3E-20 1.8E-24 138.5 5.7 64 66-140 39-102 (120)
7 3j21_U 50S ribosomal protein L 99.8 6.8E-20 2.3E-24 138.0 3.8 70 54-140 36-105 (121)
8 3u5e_Y L33, YL33, 60S ribosoma 99.8 3.1E-19 1.1E-23 135.5 4.4 71 53-140 39-109 (127)
9 4a17_S RPL26, 60S ribosomal pr 99.7 6E-19 2E-23 135.2 4.4 71 53-140 38-108 (135)
10 3iz5_Y 60S ribosomal protein L 99.7 5.9E-19 2E-23 137.3 4.0 70 54-140 39-108 (150)
11 2zkr_t 60S ribosomal protein L 99.7 1.7E-18 5.9E-23 133.8 5.8 63 67-140 46-109 (145)
12 1nz9_A Transcription antitermi 98.2 1.7E-06 5.8E-11 55.8 4.1 36 68-103 3-38 (58)
13 2e6z_A Transcription elongatio 97.4 5.6E-05 1.9E-09 49.5 1.7 30 67-96 5-34 (59)
14 2jvv_A Transcription antitermi 97.4 0.00018 6.3E-09 54.9 4.6 37 67-103 125-161 (181)
15 3p8b_B Transcription antitermi 97.4 0.00021 7.1E-09 53.4 4.7 36 68-103 90-125 (152)
16 2do3_A Transcription elongatio 97.2 0.00053 1.8E-08 47.1 5.2 45 69-114 17-61 (69)
17 2ckk_A KIN17; beta barrel, rib 96.7 0.0018 6.2E-08 48.2 4.6 33 71-103 72-104 (127)
18 2xhc_A Transcription antitermi 96.1 0.0062 2.1E-07 52.0 4.9 37 67-103 296-332 (352)
19 1m1h_A Transcription antitermi 95.8 0.0016 5.6E-08 53.2 0.0 37 67-103 192-228 (248)
20 2joy_A 50S ribosomal protein L 93.2 0.046 1.6E-06 38.8 2.4 36 70-106 4-39 (96)
21 4a18_F RPL14; ribosome, eukary 93.2 0.13 4.4E-06 38.7 5.0 36 70-106 7-42 (126)
22 3iz5_N 60S ribosomal protein L 92.8 0.076 2.6E-06 40.3 3.3 36 70-106 7-42 (134)
23 3izc_N 60S ribosomal protein R 92.7 0.071 2.4E-06 40.7 2.9 36 70-106 15-50 (138)
24 4a18_N RPL27, ribosomal protei 92.5 0.15 5.3E-06 39.1 4.6 40 70-109 5-50 (144)
25 3j21_5 50S ribosomal protein L 92.1 0.072 2.4E-06 37.1 2.2 36 70-106 4-39 (83)
26 2e70_A Transcription elongatio 89.7 0.37 1.3E-05 32.9 3.9 31 71-103 19-49 (71)
27 1qp2_A Protein (PSAE protein); 85.0 0.77 2.6E-05 31.5 3.2 38 70-107 2-45 (70)
28 3iz6_D 40S ribosomal protein S 80.6 1.9 6.3E-05 36.0 4.5 41 66-106 171-214 (265)
29 3j20_E 30S ribosomal protein S 79.7 1.5 5.2E-05 36.0 3.7 41 66-106 175-219 (243)
30 2xzm_W 40S ribosomal protein S 77.8 2.8 9.7E-05 34.8 4.8 40 66-105 173-215 (260)
31 3bbo_X Ribosomal protein L27; 76.2 0.54 1.9E-05 37.8 0.1 24 4-27 8-32 (198)
32 2oug_A Transcriptional activat 74.5 0.0072 2.5E-07 44.9 -10.6 30 68-97 108-137 (162)
33 3kbg_A 30S ribosomal protein S 72.3 3 0.0001 33.6 3.5 38 66-103 135-176 (213)
34 4a17_P RPL21, 60S ribosomal pr 71.8 3.4 0.00012 32.0 3.6 47 69-115 33-99 (157)
35 4a18_E RPL6; ribosome, eukaryo 71.7 3.1 0.00011 33.2 3.4 63 69-137 44-109 (191)
36 3u5c_E RP5, S7, YS6, 40S ribos 70.6 1.9 6.4E-05 35.9 2.0 41 66-106 171-214 (261)
37 1jb0_E Photosystem 1 reaction 67.4 6.1 0.00021 27.3 3.7 37 70-106 1-44 (75)
38 3iz5_U 60S ribosomal protein L 62.7 3.8 0.00013 32.0 2.2 47 69-115 33-99 (164)
39 4he6_A Peptidase family U32; u 62.4 13 0.00044 24.8 4.6 28 67-94 27-54 (89)
40 1zuy_A Myosin-5 isoform; SH3 d 62.3 7.3 0.00025 23.2 3.1 18 66-83 16-33 (58)
41 3iz5_G 60S ribosomal protein L 60.6 3.6 0.00012 33.5 1.8 63 69-137 74-139 (219)
42 1at0_A 17-hedgehog; developmen 59.6 13 0.00045 27.0 4.6 28 66-93 88-116 (145)
43 2g6f_X RHO guanine nucleotide 58.2 6.2 0.00021 23.8 2.2 18 66-83 19-36 (59)
44 1zuu_A BZZ1 protein; SH3 domai 57.3 9 0.00031 22.8 2.8 18 66-83 16-33 (58)
45 3izc_U 60S ribosomal protein R 57.2 8.3 0.00028 29.9 3.2 47 69-115 33-99 (160)
46 2ew3_A SH3-containing GRB2-lik 57.1 6.4 0.00022 24.9 2.2 17 67-83 19-35 (68)
47 2ege_A Uncharacterized protein 55.7 17 0.00057 23.1 4.1 15 66-80 29-43 (75)
48 2a28_A BZZ1 protein; SH3 domai 55.3 14 0.00048 21.7 3.5 17 66-82 15-31 (54)
49 3j21_R 50S ribosomal protein L 55.0 14 0.00046 26.4 3.9 35 69-103 34-78 (97)
50 2jz2_A SSL0352 protein; SH3-li 55.0 16 0.00053 24.7 3.9 40 70-109 2-43 (66)
51 2ebp_A SAM and SH3 domain-cont 54.2 22 0.00075 22.6 4.5 17 67-83 27-43 (73)
52 2ak5_A RHO guanine nucleotide 53.7 8 0.00027 23.6 2.2 18 66-83 21-38 (64)
53 2bzy_A CRK-like protein, CRKL 53.7 7.9 0.00027 24.0 2.2 17 67-83 19-35 (67)
54 2d8h_A SH3YL1 protein; SH3 dom 53.7 15 0.00052 23.4 3.7 18 66-83 32-49 (80)
55 1ruw_A Myosin-3 isoform, MYO3; 53.4 12 0.00041 23.2 3.1 17 66-82 18-34 (69)
56 2xmf_A Myosin 1E SH3; motor pr 53.0 8.5 0.00029 23.2 2.2 17 66-82 20-36 (60)
57 2x3w_D Syndapin I, protein kin 52.6 11 0.00037 22.6 2.7 16 66-81 18-33 (60)
58 2gnc_A SLIT-ROBO RHO GTPase-ac 52.4 8.8 0.0003 23.2 2.2 15 67-81 22-36 (60)
59 1sem_A SEM-5; SRC-homology 3 ( 51.9 16 0.00055 21.6 3.4 17 66-82 17-33 (58)
60 2zzd_A Thiocyanate hydrolase s 51.7 11 0.00036 28.3 2.9 28 67-94 34-71 (126)
61 2yuo_A CIP85, RUN and TBC1 dom 51.4 8.9 0.0003 24.5 2.2 15 67-81 23-37 (78)
62 1x2k_A OSTF1, osteoclast stimu 50.9 10 0.00036 23.5 2.4 17 66-82 22-38 (68)
63 1k1z_A VAV; SH3, proto-oncogen 50.8 15 0.00053 23.3 3.3 17 66-82 33-49 (78)
64 3c0c_A Endophilin-A2; endocyto 50.7 9.3 0.00032 24.1 2.2 18 66-83 28-45 (73)
65 1vq8_Q 50S ribosomal protein L 50.7 18 0.0006 25.8 3.9 36 69-104 33-78 (96)
66 1w70_A Neutrophil cytosol fact 50.6 9.7 0.00033 23.0 2.2 17 67-83 20-36 (60)
67 2epd_A RHO GTPase-activating p 50.4 11 0.00036 24.1 2.5 16 66-81 25-40 (76)
68 1gcq_C VAV proto-oncogene; SH3 50.4 17 0.00058 22.4 3.4 15 67-81 26-40 (70)
69 2dl8_A SLIT-ROBO RHO GTPase-ac 50.0 9.6 0.00033 24.0 2.2 16 66-81 24-39 (72)
70 2eyx_A V-CRK sarcoma virus CT1 49.4 8.1 0.00028 24.1 1.7 17 67-83 24-40 (67)
71 1j3t_A Intersectin 2; beta bar 49.2 8.9 0.00031 24.3 1.9 15 67-81 26-40 (74)
72 2iim_A Proto-oncogene tyrosine 48.5 13 0.00045 22.5 2.6 17 66-82 21-37 (62)
73 1csk_A C-SRC SH3 domain; phosp 47.0 14 0.00046 23.1 2.5 15 66-80 26-40 (71)
74 3eg3_A Proto-oncogene tyrosine 46.8 12 0.00041 22.5 2.2 15 66-80 20-34 (63)
75 3tee_A Flagella basal BODY P-r 46.7 11 0.00038 29.6 2.5 39 66-105 137-187 (219)
76 3dcl_A TM1086; SAD, structural 46.4 28 0.00095 29.3 5.0 33 71-103 85-117 (284)
77 3qyh_B CO-type nitrIle hydrata 45.6 20 0.00068 28.7 3.9 29 66-94 127-165 (219)
78 3izc_a 60S ribosomal protein R 45.1 1.2 4E-05 34.0 -3.3 40 70-109 5-50 (136)
79 2eqm_A PHD finger protein 20-l 45.0 54 0.0019 22.4 5.6 37 67-103 17-53 (88)
80 2ydl_A SH3 domain-containing k 44.7 13 0.00045 23.5 2.2 16 66-81 17-32 (69)
81 2lcs_A NAP1-binding protein 2; 44.5 15 0.00053 23.4 2.5 17 66-82 20-36 (73)
82 1w1f_A Tyrosine-protein kinase 44.4 12 0.00042 22.7 2.0 16 67-82 23-38 (65)
83 2ysq_A RHO guanine nucleotide 44.4 14 0.00047 23.8 2.3 16 67-82 26-41 (81)
84 1uhc_A KIAA1010 protein; beta 44.1 22 0.00075 22.6 3.3 18 66-83 28-45 (79)
85 3udc_A Small-conductance mecha 43.8 16 0.00053 29.2 3.0 22 69-95 128-149 (285)
86 2k9g_A SH3 domain-containing k 43.6 14 0.00048 23.1 2.2 17 66-82 24-40 (73)
87 1vhy_A Hypothetical protein HI 43.3 19 0.00066 28.7 3.5 37 67-103 33-69 (257)
88 1yn8_A NBP2, NAP1-binding prot 43.3 14 0.00047 22.0 2.1 15 67-81 17-31 (59)
89 1uhf_A Intersectin 2; beta bar 43.2 15 0.00052 22.9 2.3 15 66-80 23-37 (69)
90 3izc_G 60S ribosomal protein R 43.2 11 0.00037 29.7 1.9 63 69-137 33-98 (176)
91 2dl7_A KIAA0769 protein; SH3 d 42.8 15 0.0005 23.1 2.2 16 66-81 23-38 (73)
92 2zkr_q 60S ribosomal protein L 42.5 10 0.00034 29.5 1.6 47 69-115 33-99 (160)
93 4e8b_A Ribosomal RNA small sub 42.4 21 0.00071 28.4 3.5 36 67-102 31-66 (251)
94 4a4f_A SurviVal of motor neuro 42.4 45 0.0015 21.0 4.6 37 67-103 6-43 (64)
95 2enm_A Sorting nexin-9; SH3-li 42.2 24 0.00083 22.2 3.2 17 66-82 25-41 (77)
96 1oot_A Hypothetical 40.4 kDa p 42.1 29 0.00098 20.7 3.4 17 66-82 18-34 (60)
97 3hht_B NitrIle hydratase beta 42.1 17 0.00059 29.3 3.0 28 67-94 139-176 (229)
98 1dj7_B Ferredoxin thioredoxin 41.9 20 0.00068 24.7 2.9 26 71-96 2-41 (75)
99 1ugp_B NitrIle hydratase beta 41.5 19 0.00064 29.0 3.1 28 67-94 136-173 (226)
100 2dlp_A KIAA1783 protein; SH3 d 40.9 14 0.00047 24.0 1.9 14 67-80 24-37 (85)
101 1nm7_A Peroxisomal membrane pr 40.1 20 0.00069 23.0 2.6 17 67-83 24-40 (69)
102 2jte_A CD2-associated protein; 40.0 32 0.0011 20.8 3.4 16 66-81 21-36 (64)
103 2dl5_A KIAA0769 protein; SH3 d 40.0 23 0.00078 22.6 2.9 17 67-83 29-45 (78)
104 2dmo_A Neutrophil cytosol fact 39.8 13 0.00046 23.0 1.6 16 67-82 23-38 (68)
105 2v1r_A Peroxisomal membrane pr 39.6 20 0.00069 22.7 2.5 16 67-82 31-46 (80)
106 2csi_A RIM-BP2, RIM binding pr 39.2 26 0.00088 22.2 3.0 18 66-83 29-46 (76)
107 1x69_A Cortactin isoform A; SH 39.2 17 0.00057 23.2 2.1 17 66-82 32-48 (79)
108 3iz5_a 60S ribosomal protein L 39.2 1.2 4.1E-05 33.9 -4.0 39 70-108 5-49 (136)
109 2jt4_A Cytoskeleton assembly c 39.1 30 0.001 21.2 3.3 16 67-82 22-37 (71)
110 2l0a_A STAM-1, signal transduc 38.9 16 0.00055 23.5 2.0 16 66-81 32-47 (72)
111 3jyw_Q 60S ribosomal protein L 38.7 3.5 0.00012 30.6 -1.5 48 69-116 32-99 (116)
112 2da9_A SH3-domain kinase bindi 38.3 17 0.00057 22.6 1.9 16 66-81 22-37 (70)
113 2oqk_A Putative translation in 38.3 29 0.001 24.9 3.5 55 43-97 36-98 (117)
114 1gbq_A GRB2; complex (signal t 38.2 21 0.00071 22.5 2.4 16 67-82 25-40 (74)
115 2oi3_A Tyrosine-protein kinase 38.2 16 0.00055 23.5 1.9 16 67-82 41-56 (86)
116 2csq_A RIM-BP2, RIM binding pr 38.0 32 0.0011 22.9 3.4 15 66-80 40-54 (97)
117 3kw2_A Probable R-RNA methyltr 37.6 25 0.00086 28.1 3.3 35 67-101 30-64 (257)
118 1jqq_A PEX13P, peroxisomal mem 37.5 22 0.00076 23.2 2.5 17 67-83 31-47 (92)
119 1vhk_A Hypothetical protein YQ 37.5 27 0.00093 28.0 3.5 35 66-100 33-67 (268)
120 2vkn_A Protein SSU81; membrane 37.3 27 0.00094 21.6 2.8 14 67-80 23-36 (70)
121 1wxt_A Hypothetical protein FL 37.3 24 0.0008 21.8 2.5 15 67-81 23-37 (68)
122 1d7q_A Translation initiation 37.3 33 0.0011 25.9 3.8 33 66-98 66-98 (143)
123 1x6g_A Megakaryocyte-associate 37.2 32 0.0011 22.1 3.2 16 67-82 33-48 (81)
124 2bz8_A SH3-domain kinase bindi 37.0 24 0.00081 21.0 2.4 18 66-83 16-33 (58)
125 1jt8_A EIF-1A, probable transl 36.9 18 0.00062 25.8 2.1 31 67-97 56-87 (102)
126 1u5s_A Cytoplasmic protein NCK 36.8 22 0.00074 22.0 2.3 15 67-81 22-36 (71)
127 2v1q_A SLA1, cytoskeleton asse 36.3 38 0.0013 20.0 3.3 15 67-81 18-32 (60)
128 1z85_A Hypothetical protein TM 36.2 26 0.00089 27.8 3.2 37 66-102 37-73 (234)
129 3a2z_A Bifunctional glutathion 36.1 69 0.0024 25.0 5.6 49 51-108 100-151 (197)
130 2yuq_A Tyrosine-protein kinase 35.5 28 0.00096 22.5 2.8 17 66-82 34-50 (85)
131 2rf0_A Mitogen-activated prote 35.4 26 0.00088 23.4 2.6 15 67-81 45-59 (89)
132 1i07_A Epidermal growth factor 35.3 20 0.00068 21.5 1.9 15 67-81 17-31 (60)
133 2k2m_A EPS8-like protein 1; al 35.0 32 0.0011 21.2 2.9 15 67-81 24-38 (68)
134 2dgy_A MGC11102 protein; EIF-1 34.9 32 0.0011 24.7 3.2 30 67-96 51-81 (111)
135 1wx6_A Cytoplasmic protein NCK 34.7 36 0.0012 22.1 3.2 16 66-81 32-47 (91)
136 2i0n_A Class VII unconventiona 34.7 26 0.0009 22.4 2.5 20 66-85 25-44 (80)
137 1ugv_A KIAA0621, olygophrenin- 34.2 11 0.00039 23.7 0.6 15 66-80 25-39 (72)
138 4fm4_B NitrIle hydratase beta 33.6 27 0.00091 27.7 2.8 26 69-94 118-153 (206)
139 2ct4_A CDC42-interacting prote 33.6 39 0.0013 20.8 3.1 16 67-82 23-38 (70)
140 1jo8_A ABP1P, actin binding pr 33.6 28 0.00095 20.7 2.3 17 66-82 15-31 (58)
141 3sd4_A PHD finger protein 20; 33.4 91 0.0031 19.9 5.0 36 67-102 10-45 (69)
142 1t9h_A YLOQ, probable GTPase E 33.4 57 0.002 26.5 4.9 37 69-107 50-89 (307)
143 1k4u_S Phagocyte NADPH oxidase 33.3 25 0.00085 21.2 2.1 16 67-82 21-36 (62)
144 2m0y_A Dedicator of cytokinesi 33.3 32 0.0011 21.3 2.7 16 66-81 26-41 (74)
145 2b86_A Cytoplasmic protein NCK 32.8 22 0.00076 22.4 1.9 15 67-81 20-34 (67)
146 2drm_A Acanthamoeba myosin IB; 32.7 30 0.001 20.4 2.4 17 66-82 18-34 (58)
147 2lj0_A Sorbin and SH3 domain-c 32.6 26 0.00089 22.2 2.2 19 66-84 21-39 (65)
148 2cuc_A SH3 domain containing r 32.5 33 0.0011 21.0 2.6 16 66-81 22-37 (70)
149 1mhn_A SurviVal motor neuron p 32.5 81 0.0028 19.4 4.5 34 70-103 4-38 (59)
150 1uti_A GRB2-related adaptor pr 32.3 30 0.001 20.4 2.3 17 66-82 16-32 (58)
151 1cka_A C-CRK N-terminal SH3 do 32.3 30 0.001 20.4 2.3 16 67-82 17-32 (57)
152 2yup_A Vinexin; sorbin and SH3 31.9 21 0.00073 23.3 1.7 16 66-81 32-47 (90)
153 2jw4_A Cytoplasmic protein NCK 31.9 40 0.0014 21.0 3.0 16 66-81 22-37 (72)
154 1uj0_A Signal transducing adap 31.5 31 0.0011 20.8 2.3 16 67-82 21-36 (62)
155 4glm_A Dynamin-binding protein 31.3 29 0.00098 21.3 2.2 19 66-84 28-46 (72)
156 2vwf_A Growth factor receptor- 31.2 32 0.0011 20.2 2.3 17 66-82 17-33 (58)
157 3mea_A SAGA-associated factor 31.1 61 0.0021 25.2 4.4 41 66-106 41-85 (180)
158 3rnj_A Brain-specific angiogen 31.0 36 0.0012 20.7 2.6 14 68-81 25-38 (67)
159 3i5r_A Phosphatidylinositol 3- 30.9 46 0.0016 21.3 3.2 15 66-80 20-34 (83)
160 1eik_A RNA polymerase subunit 30.8 22 0.00076 24.3 1.7 28 55-82 29-63 (77)
161 2nwm_A Vinexin; cell adhesion; 30.7 33 0.0011 21.2 2.4 17 67-83 17-33 (65)
162 2vv5_A MSCS, small-conductance 30.4 23 0.00077 28.4 1.9 60 68-133 128-195 (286)
163 2fpe_A C-JUN-amino-terminal ki 30.4 31 0.0011 20.8 2.2 17 66-82 18-34 (62)
164 1whl_A Cylindromatosis tumor s 30.1 42 0.0014 23.3 3.1 27 69-95 7-34 (95)
165 2eqj_A Metal-response element- 30.0 99 0.0034 20.7 4.8 36 68-103 12-47 (66)
166 1gxi_E Photosystem I reaction 30.0 11 0.00039 25.8 0.1 34 70-103 2-39 (73)
167 1wi7_A SH3-domain kinase bindi 29.8 20 0.00068 22.1 1.2 15 66-80 22-36 (68)
168 2oaw_A Spectrin alpha chain, b 29.8 35 0.0012 20.4 2.3 17 66-82 16-32 (65)
169 2rqr_A CED-12 homolog, engulfm 29.7 27 0.00094 24.5 2.1 16 66-81 74-89 (119)
170 1y0m_A 1-phosphatidylinositol- 29.7 35 0.0012 20.4 2.3 16 67-82 19-34 (61)
171 1x6b_A RHO guanine exchange fa 29.7 22 0.00076 22.7 1.5 16 66-81 32-47 (79)
172 3b9t_A Twin-arginine transloca 29.3 24 0.00082 31.4 2.0 64 9-80 45-108 (484)
173 1v6z_A Hypothetical protein TT 29.3 50 0.0017 25.7 3.7 35 67-103 26-60 (228)
174 2fpf_A C-JUN-amino-terminal ki 29.3 32 0.0011 21.3 2.2 17 66-82 21-37 (71)
175 4b6m_A Tubulin-specific chaper 29.2 50 0.0017 22.8 3.3 24 69-95 5-28 (84)
176 1gl5_A Tyrosine-protein kinase 29.2 34 0.0012 20.9 2.3 16 67-82 18-33 (67)
177 3ulr_B SRC substrate cortactin 29.0 36 0.0012 20.4 2.3 19 66-84 24-42 (65)
178 1b07_A Protein (proto-oncogene 28.8 35 0.0012 21.0 2.3 16 67-82 19-34 (65)
179 1zx6_A YPR154WP; SH3 domain, p 28.6 34 0.0012 20.3 2.1 17 66-82 17-33 (58)
180 3h0h_A Proto-oncogene tyrosine 28.6 36 0.0012 21.0 2.3 18 66-83 30-47 (73)
181 2j05_A RAS GTPase-activating p 28.5 34 0.0012 20.8 2.1 17 66-82 21-37 (65)
182 2dm1_A Protein VAV-2; RHO fami 28.0 38 0.0013 21.2 2.3 17 66-82 22-38 (73)
183 2pqh_A Spectrin alpha chain, b 27.9 37 0.0013 21.6 2.3 17 67-83 18-34 (80)
184 4e6r_A Cytoplasmic protein NCK 27.9 37 0.0013 19.8 2.2 18 66-83 16-33 (58)
185 1x2p_A Protein arginine N-meth 27.9 37 0.0013 20.8 2.2 17 66-82 22-38 (68)
186 2k52_A Uncharacterized protein 27.8 79 0.0027 20.2 4.0 25 69-103 45-69 (80)
187 3a8g_B NitrIle hydratase subun 27.8 31 0.001 27.5 2.2 27 67-93 120-157 (212)
188 2dl3_A Sorbin and SH3 domain-c 27.6 40 0.0014 20.5 2.4 17 66-82 22-38 (68)
189 1x43_A Endophilin B1, SH3 doma 27.6 54 0.0019 20.8 3.1 16 66-81 32-47 (81)
190 1ue9_A Intersectin 2; beta bar 27.6 33 0.0011 21.7 2.0 18 66-83 22-39 (80)
191 1zlm_A Osteoclast stimulating 27.2 42 0.0014 19.9 2.3 17 66-82 18-34 (58)
192 4esr_A Jouberin; AHI-1, AHI1, 27.1 36 0.0012 20.8 2.1 18 66-83 21-38 (69)
193 2djq_A SH3 domain containing r 26.8 39 0.0013 20.7 2.2 17 67-83 23-39 (68)
194 3cqt_A P59-FYN, proto-oncogene 26.7 40 0.0014 21.7 2.3 17 66-82 20-36 (79)
195 3ngp_A Spectrin alpha chain, b 26.6 43 0.0015 19.8 2.3 18 66-83 21-38 (62)
196 2egv_A UPF0088 protein AQ_165; 26.4 32 0.0011 26.9 2.1 31 66-97 25-55 (229)
197 4f14_A Nebulette; SH3 domain, 26.4 39 0.0013 20.1 2.1 18 66-83 21-38 (64)
198 2j6f_A CD2-associated protein; 25.9 40 0.0014 20.3 2.1 15 67-81 17-31 (62)
199 1w4s_A Polybromo, polybromo 1 25.3 96 0.0033 22.9 4.5 36 68-103 25-63 (174)
200 2dl4_A Protein STAC; SH3 domai 25.2 45 0.0015 20.5 2.3 16 66-81 22-37 (68)
201 2kxd_A 11-MER peptide, SH3 dom 25.0 44 0.0015 20.8 2.2 18 66-83 14-31 (73)
202 3reb_B Tyrosine-protein kinase 24.9 68 0.0023 20.7 3.3 16 66-81 18-33 (90)
203 1tuc_A Alpha-spectrin; capping 24.6 46 0.0016 20.2 2.2 18 67-84 5-22 (63)
204 2dbk_A CRK-like protein; struc 24.5 1.4E+02 0.0049 19.2 4.8 18 67-84 34-51 (88)
205 3bbo_G Ribosomal protein L4; l 24.1 16 0.00056 30.6 0.0 24 4-27 1-24 (293)
206 2f41_A Transcription factor FA 23.9 1.2E+02 0.0041 20.3 4.5 36 70-105 73-112 (121)
207 2ke9_A Caskin-2; SH3 domain, A 23.8 35 0.0012 22.3 1.7 18 66-83 34-51 (83)
208 3s6w_A Tudor domain-containing 23.7 75 0.0026 19.1 3.1 34 70-103 2-36 (54)
209 1wyx_A CRK-associated substrat 23.7 53 0.0018 20.1 2.4 17 66-82 18-34 (69)
210 2equ_A PHD finger protein 20-l 23.1 97 0.0033 20.5 3.8 40 69-108 9-49 (74)
211 2o9s_A Ponsin; SH3 domain, sig 23.1 48 0.0016 20.1 2.1 16 66-81 21-36 (67)
212 2ct3_A Vinexin; SH3 domian, st 22.9 38 0.0013 20.7 1.6 16 67-82 23-38 (70)
213 3i4o_A Translation initiation 22.8 59 0.002 22.0 2.7 25 67-91 51-75 (79)
214 3thk_A Spectrin alpha chain, b 22.8 54 0.0019 20.1 2.3 18 66-83 20-37 (73)
215 2e5k_A Suppressor of T-cell re 22.5 49 0.0017 21.6 2.2 16 66-81 31-46 (94)
216 1r5b_A Eukaryotic peptide chai 22.5 88 0.003 26.4 4.3 28 66-96 294-321 (467)
217 2khj_A 30S ribosomal protein S 22.4 98 0.0034 20.9 3.8 25 69-103 75-99 (109)
218 2d8j_A FYN-related kinase; SH3 22.2 42 0.0015 20.9 1.7 16 67-82 23-38 (77)
219 2ed0_A ABL interactor 2; coile 22.1 52 0.0018 20.8 2.2 18 66-83 32-49 (78)
220 3u23_A CD2-associated protein; 22.0 34 0.0012 20.4 1.2 16 66-81 22-37 (65)
221 1tg0_A BBC1 protein, myosin ta 22.0 52 0.0018 20.1 2.1 16 66-81 22-37 (68)
222 2dil_A Proline-serine-threonin 21.9 55 0.0019 20.0 2.2 16 67-82 24-39 (69)
223 1hr0_W Translation initiation 21.9 44 0.0015 21.6 1.8 15 67-81 44-58 (71)
224 2id0_A Exoribonuclease 2; RNAs 21.8 92 0.0032 27.9 4.4 35 68-102 52-87 (644)
225 1wie_A RIM binding protein 2; 21.7 1.6E+02 0.0053 19.4 4.7 35 43-79 17-51 (96)
226 2dnu_A RUH-061, SH3 multiple d 21.6 46 0.0016 20.4 1.8 17 66-82 23-39 (71)
227 2jxb_A T-cell surface glycopro 21.3 67 0.0023 20.8 2.6 16 66-81 46-61 (86)
228 4b3f_X DNA-binding protein smu 21.3 81 0.0028 27.5 3.9 31 67-97 78-111 (646)
229 2yun_A Nostrin; nitric oxide s 21.3 60 0.002 20.4 2.3 17 66-82 22-38 (79)
230 3jxo_A TRKA-N domain protein; 21.2 1.5E+02 0.0052 18.4 4.4 49 19-82 25-73 (86)
231 1g2b_A Spectrin alpha chain; c 21.1 63 0.0022 19.4 2.3 17 67-83 37-53 (62)
232 2cre_A HEF-like protein; SH3 d 21.0 47 0.0016 20.3 1.8 16 67-82 23-38 (71)
233 3p8d_A Medulloblastoma antigen 21.0 88 0.003 20.7 3.2 49 69-117 6-58 (67)
234 1wxb_A Epidermal growth factor 21.0 48 0.0016 20.4 1.8 14 67-80 23-36 (68)
235 1x2q_A Signal transducing adap 21.0 55 0.0019 21.2 2.2 16 67-82 33-48 (88)
236 2dbm_A SH3-containing GRB2-lik 20.7 37 0.0013 21.1 1.2 18 66-83 22-39 (73)
237 3k67_A Putative dehydratase AF 20.6 98 0.0033 22.6 3.7 10 69-78 115-124 (159)
238 1aww_A ATK, AMGX1, BPK, bruton 20.6 35 0.0012 20.8 1.0 16 67-82 24-39 (67)
239 4ag1_C Fynomer; hydrolase-de n 20.4 62 0.0021 20.9 2.3 18 66-83 21-38 (84)
240 2khi_A 30S ribosomal protein S 20.4 1.1E+02 0.0038 20.9 3.8 25 69-103 75-99 (115)
241 1g5v_A SurviVal motor neuron p 20.2 1.9E+02 0.0065 19.6 4.9 34 69-102 10-44 (88)
242 2egc_A SH3 and PX domain-conta 20.2 48 0.0017 20.9 1.7 17 66-82 24-40 (75)
243 3mp6_A MBP, SGF29, maltose-bin 20.2 1.2E+02 0.0042 25.3 4.7 39 67-105 385-427 (522)
244 2cud_A SRC-like-adapter; SH3 d 20.2 34 0.0012 21.9 1.0 14 67-80 33-46 (79)
245 1zun_B Sulfate adenylate trans 20.2 73 0.0025 26.4 3.2 31 66-99 266-296 (434)
246 2l66_A SSO7C4, transcriptional 20.1 46 0.0016 20.2 1.5 19 65-83 21-39 (53)
No 1
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.8e-53 Score=340.61 Aligned_cols=139 Identities=61% Similarity=0.877 Sum_probs=74.5
Q ss_pred ChhhhhhhhhccccccccccccCcccCCCCCCCccccCCCCceeeeeeeeeeeeeccCCCCCcccccceeeeCCEEEEEe
Q 032297 1 MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIA 80 (143)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~f~g~~l~~~~~~~~~~~~~~~~~~~~~~~k~Werk~~kpn~lp~~~k~~IkkGD~V~VIs 80 (143)
|||| ||||||++||||+||||||||+|++.++.+++++++||++++++++|||++|+++++|+..+|+|++||+|+||+
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lr~k~~~rslP~~~kmkIkKGD~V~VIa 79 (191)
T 3bbo_W 1 MAAM-VLQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVIS 79 (191)
T ss_dssp ---------------------------------------------------------------CTTSCCSCCSSCEEECS
T ss_pred Ccch-hhhhhhhccccccccccCcccCCCccccCcccccCCceeeEecccHHHHHHhCCCCCCccccCeeecCCEEEEee
Confidence 8999 999999999999999999999988876667999999999999999999999999999998999999999999999
Q ss_pred cCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceeecccccCCC
Q 032297 81 GCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLKRNGSSKP 140 (143)
Q Consensus 81 G~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhiSnv~~~~~ 140 (143)
|+||||+|+|++|++++|+|+|||+|+.++|+||++++++|+|+++|+|||+|||..-.|
T Consensus 80 GkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~Lvdp 139 (191)
T 3bbo_W 80 GGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILK 139 (191)
T ss_dssp SSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSS
T ss_pred cCCCCceEEEEEEECCCCEEEEeCCEEEEEecCCcccCCCCCEEEEecCcCHHHeEEEec
Confidence 999999999999999999999999999999999998899999999999999999988765
No 2
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=99.93 E-value=1.7e-26 Score=171.52 Aligned_cols=75 Identities=32% Similarity=0.467 Sum_probs=71.8
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceeecccccCCC
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLKRNGSSKP 140 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhiSnv~~~~~ 140 (143)
.+|+|++||+|+||+|+||||+|+|++|++++++|+|||+|+.++|+||++++++|+|+++|+|||+|||..-.|
T Consensus 3 ~k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p 77 (110)
T 3v2d_Y 3 VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICP 77 (110)
T ss_dssp CCCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCT
T ss_pred cccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcC
Confidence 478999999999999999999999999999999999999999999999998889999999999999999988655
No 3
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=99.92 E-value=1.9e-26 Score=171.96 Aligned_cols=79 Identities=28% Similarity=0.371 Sum_probs=74.0
Q ss_pred CcccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceeecccccCCC
Q 032297 62 LPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLKRNGSSKP 140 (143)
Q Consensus 62 lp~~~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhiSnv~~~~~ 140 (143)
.+...+|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++|+||++++++|+|+++|+|||+|||..-.|
T Consensus 8 ~~~~rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p 86 (115)
T 2zjr_R 8 SHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDP 86 (115)
T ss_dssp TTTTSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSS
T ss_pred cccceeCcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEec
Confidence 3445678999999999999999999999999999999999999999999999998899999999999999999988765
No 4
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=99.92 E-value=1.7e-25 Score=164.11 Aligned_cols=72 Identities=28% Similarity=0.432 Sum_probs=68.2
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcc-cCCceEEEEeeceeecccccCCC
Q 032297 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE-EEQGQIIKLKCDALLKRNGSSKP 140 (143)
Q Consensus 68 ~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~-~~~GgIi~~E~PIhiSnv~~~~~ 140 (143)
.+|++||+|+||+|+||||+|+|++|+++ ++|+|||+|+.++|.||+++ +++|+|+++|+|||+|||..-.|
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p 74 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNA 74 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEET
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcC
Confidence 47999999999999999999999999999 99999999999999999986 89999999999999999987654
No 5
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=99.90 E-value=5e-24 Score=154.77 Aligned_cols=67 Identities=28% Similarity=0.475 Sum_probs=64.4
Q ss_pred CCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceeecccccCCC
Q 032297 73 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLKRNGSSKP 140 (143)
Q Consensus 73 GD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhiSnv~~~~~ 140 (143)
||+|+||+|+||||+|+|++|++++++|+|||+|+.++|+||++ +++|+|+++|+|||+|||..-.|
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~lv~p 67 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKLVDP 67 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEEEeC
Confidence 89999999999999999999999999999999999999999997 78999999999999999987655
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.79 E-value=5.3e-20 Score=138.47 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=57.4
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceeecccccCCC
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLKRNGSSKP 140 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhiSnv~~~~~ 140 (143)
.+|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+ +| ++|+ +.|+|||+|||..-.|
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~-kK--------~~Gg--~~e~pIh~SNV~i~~~ 102 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTL-EK--------TDGE--EVPRPLDTSNVRVTDL 102 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEE-EC--------SSSC--EEECCBCGGGEEEEEC
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEe-Ec--------CCCC--EEEeeechHHEEEEec
Confidence 467799999999999999999999999999999999999999 55 2456 8999999999987654
No 7
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.78 E-value=6.8e-20 Score=137.95 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=60.5
Q ss_pred eeccCCCCCcccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceeec
Q 032297 54 RKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLK 133 (143)
Q Consensus 54 rk~~kpn~lp~~~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhiS 133 (143)
|.+|+.+ +|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++| | .+.|+|||+|
T Consensus 36 R~ky~~r------~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~k~~---------G--~~~e~pIh~S 98 (121)
T 3j21_U 36 REKYKVR------NLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTN---------G--TEVFYPIHPS 98 (121)
T ss_dssp HHHTCCS------EEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECSS---------S--CEEECCBCGG
T ss_pred HHHhCCc------ccccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEEecC---------C--cEEEcccCHH
Confidence 6667644 456999999999999999999999999999999999999998753 3 3889999999
Q ss_pred ccccCCC
Q 032297 134 RNGSSKP 140 (143)
Q Consensus 134 nv~~~~~ 140 (143)
||..-.|
T Consensus 99 NV~l~~~ 105 (121)
T 3j21_U 99 NVMIIEL 105 (121)
T ss_dssp GEEEEEC
T ss_pred HeEEEcC
Confidence 9987554
No 8
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=99.76 E-value=3.1e-19 Score=135.54 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=61.0
Q ss_pred eeeccCCCCCcccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceee
Q 032297 53 ERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALL 132 (143)
Q Consensus 53 erk~~kpn~lp~~~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhi 132 (143)
.|.+|+.+++| |++||+|+||+|+|||++|+|++|++++++|+|||||+.+ + .|. +.|+|||+
T Consensus 39 Lr~ky~vrs~~------IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K----~-----~G~--~~e~pIh~ 101 (127)
T 3u5e_Y 39 LRAQYGIKALP------IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEK----V-----NGA--SVPINLHP 101 (127)
T ss_dssp HHHHHTCCEEE------CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEEC----S-----SSC--EEECCBCG
T ss_pred HHHHhCcCccc------ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEEC----C-----CCc--EEEcccch
Confidence 36778866665 8999999999999999999999999999999999999974 2 132 78999999
Q ss_pred cccccCCC
Q 032297 133 KRNGSSKP 140 (143)
Q Consensus 133 Snv~~~~~ 140 (143)
|||..-.|
T Consensus 102 SNV~i~~~ 109 (127)
T 3u5e_Y 102 SKLVITKL 109 (127)
T ss_dssp GGEEEEEC
T ss_pred HHEEEEcc
Confidence 99987554
No 9
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=99.75 E-value=6e-19 Score=135.21 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=61.6
Q ss_pred eeeccCCCCCcccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceee
Q 032297 53 ERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALL 132 (143)
Q Consensus 53 erk~~kpn~lp~~~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhi 132 (143)
.|.+|+.+++| |++||+|+||+|+|||++|+|++|++++++|+|||||+.+ + .| .+.|+|||+
T Consensus 38 Lr~ky~vRs~~------IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K----~-----~G--~~~e~pIh~ 100 (135)
T 4a17_S 38 LRSKYNVRSMP------VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNK----L-----NG--APYQIPLSA 100 (135)
T ss_dssp HHHHHTCSEEE------CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEEE----T-----TT--EEECCCBCG
T ss_pred HHHHhCCCccc------ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEEc----C-----CC--CEEEcccch
Confidence 36778877666 8999999999999999999999999999999999999975 2 23 278999999
Q ss_pred cccccCCC
Q 032297 133 KRNGSSKP 140 (143)
Q Consensus 133 Snv~~~~~ 140 (143)
|||..-.|
T Consensus 101 SNV~i~~~ 108 (135)
T 4a17_S 101 SQLVLTKL 108 (135)
T ss_dssp GGEEEEEC
T ss_pred HHEEEEcc
Confidence 99987655
No 10
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=99.74 E-value=5.9e-19 Score=137.26 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=60.1
Q ss_pred eeccCCCCCcccccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceeec
Q 032297 54 RKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLK 133 (143)
Q Consensus 54 rk~~kpn~lp~~~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhiS 133 (143)
|.+|+.+++ +|++||+|+||+|+|||++|+|++|++++++|+|||||+.++| |. +.|+|||+|
T Consensus 39 R~ky~vRs~------~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGVN~~K~~---------G~--~~eapIh~S 101 (150)
T 3iz5_Y 39 RHKYNVRSI------PIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKVN---------GS--TVNVGIHPS 101 (150)
T ss_dssp HTTTTCSEE------ECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECTT---------SC--EEECCBCGG
T ss_pred HHHhCCccc------ccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCcEEEeCC---------CC--EEecccchH
Confidence 566665544 5899999999999999999999999999999999999998743 22 679999999
Q ss_pred ccccCCC
Q 032297 134 RNGSSKP 140 (143)
Q Consensus 134 nv~~~~~ 140 (143)
||..-.|
T Consensus 102 NV~i~~~ 108 (150)
T 3iz5_Y 102 KVVVTKL 108 (150)
T ss_dssp GEEEEEC
T ss_pred HEEEEcc
Confidence 9987654
No 11
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.74 E-value=1.7e-18 Score=133.83 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=56.8
Q ss_pred cceeeeCCEEEEEecCCCCeE-eEEEEEEccCCEEEEeceeeeeeeecCCcccCCceEEEEeeceeecccccCCC
Q 032297 67 KMHVKAGDTVKVIAGCDKGKI-GEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLKRNGSSKP 140 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~-G~V~~V~~k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhiSnv~~~~~ 140 (143)
.|+|++||+|+||+|+|||++ |+|++|++++++|+|||+|+ .||+ | ++.|+|||+|||.+-.|
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~----~Kp~-----G--~~~e~PIh~SNV~lv~~ 109 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQR----EKAN-----G--TTVHVGIHPSKVVITRL 109 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEE----ECSS-----C--CEEECCBCGGGEEECC-
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEe----EcCC-----C--ceEEeccCHHHEEEEcC
Confidence 467999999999999999999 99999999999999999998 4553 4 89999999999998766
No 12
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=98.17 E-value=1.7e-06 Score=55.83 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=33.2
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 68 ~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
..+.+||+|.|+.|+++|..|+|.+++.++.++.|.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~ 38 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE
Confidence 347899999999999999999999999999898886
No 13
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.38 E-value=5.6e-05 Score=49.48 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=27.1
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEcc
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRH 96 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k 96 (143)
+..+.+||.|+|+.|+++|-.|+|.+|+.+
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd~e 34 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVDGN 34 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCBTT
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEeCC
Confidence 345799999999999999999999999975
No 14
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=97.35 E-value=0.00018 Score=54.89 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=33.1
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
+..+.+||+|.|+.|+++|-.|.|.+|+.+++++.|.
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~ 161 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 4467899999999999999999999999988888664
No 15
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=97.35 E-value=0.00021 Score=53.39 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.6
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 68 ~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
..+.+||+|.|+.|+++|-.|.|.+|+.+++++.|+
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~ 125 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ 125 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEE
Confidence 457999999999999999999999999999998887
No 16
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=97.21 E-value=0.00053 Score=47.09 Aligned_cols=45 Identities=33% Similarity=0.451 Sum_probs=35.0
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEeceeeeeeeecC
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKK 114 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN~~kkhvKp 114 (143)
+++.||-|+||.|++.|..|.|++|..+ .-+++-|.++..-.+-+
T Consensus 17 ~F~~GDHVkVi~G~~~getGlVV~v~~d-~v~v~SD~t~~Ei~V~~ 61 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVEEN-FVILFSDLTMHELKVLP 61 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECSS-CEEEEESSSCSEEEECT
T ss_pred eccCCCeEEEeccEEcCceEEEEEEeCC-EEEEEeCCCCCEEEEEh
Confidence 5899999999999999999999999843 45566777655444433
No 17
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.70 E-value=0.0018 Score=48.24 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=31.4
Q ss_pred eeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 71 kkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
++||+|.|+.|+++|..|++++++.++..++|+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~ 104 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEE
Confidence 789999999999999999999999998888887
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=96.05 E-value=0.0062 Score=52.05 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=33.0
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
...+..||+|.|+.|+++|-.|.|.+++.+++++.|.
T Consensus 296 ~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~ 332 (352)
T 2xhc_A 296 ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN 332 (352)
T ss_dssp -CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEE
Confidence 4457899999999999999999999999998888775
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=95.76 E-value=0.0016 Score=53.22 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
+..+.+||+|.|++|+++|-.|.|.+|+.+++++.|.
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~ 228 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248)
T ss_dssp -------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 4567899999999999999999999999988777664
No 20
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=93.20 E-value=0.046 Score=38.75 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=31.7
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEecee
Q 032297 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (143)
Q Consensus 70 IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN 106 (143)
+..|-.|.+++|+|+||...|+++.. ++.|+|.|-.
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD-~~~vLV~gp~ 39 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID-DNFVLVTGPK 39 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS-SSCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC-CCEEEEECCc
Confidence 67899999999999999999999984 5789998863
No 21
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=93.19 E-value=0.13 Score=38.72 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=32.8
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEecee
Q 032297 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (143)
Q Consensus 70 IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN 106 (143)
+..|=.|.|..|++.|+...|++|..+ |+|+|+|-.
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~-nrvLVdGp~ 42 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ-NRILIDGEH 42 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT-TEEEEEETT
T ss_pred eecceEEEEccCCccCCEEEEEEEecC-CeEEEeCCC
Confidence 678889999999999999999999976 799999976
No 22
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=92.81 E-value=0.076 Score=40.28 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=33.0
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEecee
Q 032297 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (143)
Q Consensus 70 IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN 106 (143)
+..|-.|.|..|+|.|+...|++|..+ |+|+|+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~-~rvLVdG~~ 42 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQ-NRALVDAPD 42 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSS-SEEEEEETT
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCC-CeEEEeCCC
Confidence 678999999999999999999999985 799999976
No 23
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=92.68 E-value=0.071 Score=40.67 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=32.6
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEecee
Q 032297 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (143)
Q Consensus 70 IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN 106 (143)
+..|-.|.|..|+|.|+...|++|..+ |+|+|+|-.
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~-~rVLVDGp~ 50 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ-KKVLIDGPK 50 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS-SEEEEECSS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC-CEEEEEcCC
Confidence 678999999999999999999999875 799999864
No 24
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=92.46 E-value=0.15 Score=39.13 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=35.2
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccC------CEEEEeceeeee
Q 032297 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLKT 109 (143)
Q Consensus 70 IkkGD~V~VIsG~dKGK~G~V~~V~~k~------n~ViVegvN~~k 109 (143)
+++|=.|.|++|++.|+...|++++.+. ++++|.|+....
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP 50 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSP 50 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECC
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCC
Confidence 6789899999999999999999999775 899999986443
No 25
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.13 E-value=0.072 Score=37.11 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=31.7
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEecee
Q 032297 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 106 (143)
Q Consensus 70 IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegvN 106 (143)
+..|-.|.+..|+|+|+...|+++..+ ++|+|.|-.
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD~-~~vlV~g~~ 39 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIIDK-NFVLVTGAG 39 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECSS-SCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcCC-CEEEEECCc
Confidence 678999999999999999999998765 688888864
No 26
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.70 E-value=0.37 Score=32.95 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=25.4
Q ss_pred eeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 71 kkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
..|-+|.|..|++||..|.|..+... .+-||
T Consensus 19 liGktV~I~kGpyKG~~GiVkd~t~~--~~RVE 49 (71)
T 2e70_A 19 LIGQTVRISQGPYKGYIGVVKDATES--TARVE 49 (71)
T ss_dssp STTSEEEECSSTTTTCEEEEEEECSS--CEEEE
T ss_pred cCCCEEEEeccCCCCeEEEEEECCCC--eEEEE
Confidence 35779999999999999999888665 55555
No 27
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=84.97 E-value=0.77 Score=31.54 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=31.8
Q ss_pred eeeCCEEEEEecC--CCCeEeEEEEEEccC----CEEEEeceee
Q 032297 70 VKAGDTVKVIAGC--DKGKIGEITKVFRHN----STVMVKDINL 107 (143)
Q Consensus 70 IkkGD~V~VIsG~--dKGK~G~V~~V~~k~----n~ViVegvN~ 107 (143)
|.+|+.|.|++=. +-+.+|.|.+|+... -.|..|++|-
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy 45 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNY 45 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEeccccc
Confidence 6899999999986 679999999999875 3567778875
No 28
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=80.59 E-value=1.9 Score=35.97 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=33.4
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC---CEEEEecee
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVKDIN 106 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~---n~ViVegvN 106 (143)
.-.++..|-.|.|+.|.+-|++|+|..+.++. +.|.|+|-+
T Consensus 171 d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~ 214 (265)
T 3iz6_D 171 DFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDAL 214 (265)
T ss_dssp EEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCS
T ss_pred eEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECC
Confidence 34567788899999999999999999999864 577887654
No 29
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.71 E-value=1.5 Score=36.01 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=34.3
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEcc----CCEEEEecee
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRH----NSTVMVKDIN 106 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k----~n~ViVegvN 106 (143)
.-.++..|-.|.|+.|.+-|++|+|..+.++ .+.|.|++-+
T Consensus 175 d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~ 219 (243)
T 3j20_E 175 EVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEE 219 (243)
T ss_dssp EEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESS
T ss_pred eEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCC
Confidence 4467788999999999999999999999875 3678888765
No 30
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=77.80 E-value=2.8 Score=34.77 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=32.9
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC---CEEEEece
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVKDI 105 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~---n~ViVegv 105 (143)
.-.++..|-.|.|+.|.+-|.+|+|.++.++. +.|.|++-
T Consensus 173 d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~ 215 (260)
T 2xzm_W 173 NFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDA 215 (260)
T ss_dssp CCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECT
T ss_pred eEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeC
Confidence 34677889999999999999999999977663 67888764
No 31
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=76.23 E-value=0.54 Score=37.80 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=0.0
Q ss_pred hhhhhhhcccccccc-ccccCcccC
Q 032297 4 MAALQSSMTSLSISS-NSFFGQRLS 27 (143)
Q Consensus 4 ~~~~~~~~~~l~~~~-~~f~g~~l~ 27 (143)
+..|-++|.+||||+ +|||--.++
T Consensus 8 ~~~l~~~f~g~s~sssssf~~~~~~ 32 (198)
T 3bbo_X 8 SLNLIGAFKGLSLSSTSSFLRGDLS 32 (198)
T ss_dssp -------------------------
T ss_pred HHHHHHHhcccccccccceeccccc
Confidence 468999999999977 667766654
No 32
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=74.50 E-value=0.0072 Score=44.89 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=21.3
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccC
Q 032297 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHN 97 (143)
Q Consensus 68 ~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~ 97 (143)
..+.+||+|.|+.|+++|-.|.|.+++.++
T Consensus 108 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k 137 (162)
T 2oug_A 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA 137 (162)
T ss_dssp -------CTTHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCCCCCEEEEcccCCCCcEEEEEEECCCC
Confidence 457899999999999999999999987764
No 33
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=72.29 E-value=3 Score=33.60 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=32.3
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC----CEEEEe
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN----STVMVK 103 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~----n~ViVe 103 (143)
.-.++..|-.|.|+.|+.-|++|+|..+.++. +.|.|+
T Consensus 135 d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~ 176 (213)
T 3kbg_A 135 EIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ 176 (213)
T ss_dssp EEECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET
T ss_pred eEEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE
Confidence 34677889999999999999999999998754 568887
No 34
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=71.78 E-value=3.4 Score=32.03 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=35.0
Q ss_pred eeeeCCEEEEEec----------CCCCeEeEEEEEEcc----------CCEEEEeceeeeeeeecCC
Q 032297 69 HVKAGDTVKVIAG----------CDKGKIGEITKVFRH----------NSTVMVKDINLKTKHVKKR 115 (143)
Q Consensus 69 ~IkkGD~V~VIsG----------~dKGK~G~V~~V~~k----------~n~ViVegvN~~kkhvKp~ 115 (143)
..++||.|-|.-- .+-||+|.|..|..+ +++++.+-+|+.-.|+|++
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~s 99 (157)
T 4a17_P 33 TYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPS 99 (157)
T ss_dssp CCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred HhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeECCEeeeeEEEEeHHHcccc
Confidence 4689999988532 278999999865433 4677778888888888875
No 35
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=71.67 E-value=3.1 Score=33.23 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=43.4
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEec---eeeeeeeecCCcccCCceEEEEeeceeeccccc
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD---INLKTKHVKKREEEEQGQIIKLKCDALLKRNGS 137 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVeg---vN~~kkhvKp~~~~~~GgIi~~E~PIhiSnv~~ 137 (143)
.|.+|..|.|++|++.|+...+++... ++.++|-| +|-. ..+- -.+--++.-..-|++++|.+
T Consensus 44 si~pGtVlIiL~Gr~~GKrvV~LKql~-sgllLVtGP~~vn~v--plrr---vn~~~vi~TstkvDis~vki 109 (191)
T 4a18_E 44 DIAPGTVLILLAGRFRGKRVVFLKQLK-SGLLLVTGPYKVNGV--PLKR---VNQAYTLSTSTKVDLTGVNT 109 (191)
T ss_dssp TCCTTEEEEECSSTTTTBEEEEEEECT-TSCEEEECCTTTSSC--CSEE---ECGGGEEEEEEECCCTTCCG
T ss_pred cccCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCccccCC--ceEE---EeeeeEEeeeeEeecccccc
Confidence 478999999999999999999999986 58888888 2210 0000 01124555566677777654
No 36
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=70.61 E-value=1.9 Score=35.89 Aligned_cols=41 Identities=34% Similarity=0.467 Sum_probs=33.4
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC---CEEEEecee
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVKDIN 106 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~---n~ViVegvN 106 (143)
.-.++..|-.|.|+.|.+-|++|+|..+.++. +.|.|+|-+
T Consensus 171 d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~ 214 (261)
T 3u5c_E 171 DFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSL 214 (261)
T ss_dssp EEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTT
T ss_pred eEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECC
Confidence 34677789999999999999999999999864 467777544
No 37
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=67.39 E-value=6.1 Score=27.32 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=28.6
Q ss_pred eeeCCEEEEEecC--CCCeEeEEEEEEcc---CCEEEE--ecee
Q 032297 70 VKAGDTVKVIAGC--DKGKIGEITKVFRH---NSTVMV--KDIN 106 (143)
Q Consensus 70 IkkGD~V~VIsG~--dKGK~G~V~~V~~k---~n~ViV--egvN 106 (143)
|.+||.|.|++=. +-..+|+|..|+.. ++-|+| +.+|
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdkVN 44 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVN 44 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSSCC
T ss_pred CCCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEeeec
Confidence 5789999999986 67899999999986 344555 3444
No 38
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=62.66 E-value=3.8 Score=31.97 Aligned_cols=47 Identities=26% Similarity=0.487 Sum_probs=32.7
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccC----------CEEEEeceeeeeeeecCC
Q 032297 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHN----------STVMVKDINLKTKHVKKR 115 (143)
Q Consensus 69 ~IkkGD~V~VIs------G----~dKGK~G~V~~V~~k~----------n~ViVegvN~~kkhvKp~ 115 (143)
..++||.|-|.- | .+-|++|.|..|..+- ++++.+-+|+.-.|+|++
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~Vnk~v~gkil~KrInVriEHik~s 99 (164)
T 3iz5_U 33 TYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPS 99 (164)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEEECCSSSSCCEEEEEECGGGEEEC
T ss_pred HhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEEEeeeCCeeeeeEEEEeHHHcccc
Confidence 468999998853 2 2789999998776554 444455566666677764
No 39
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=62.44 E-value=13 Score=24.81 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=17.3
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEE
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVF 94 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~ 94 (143)
+-+|.+||.|+++.-.-.-..-+|.++.
T Consensus 27 rN~f~~GD~iEi~~P~g~~~~~~v~~m~ 54 (89)
T 4he6_A 27 RNHFRPGDEVEFFGPEIENFTQVIEKIW 54 (89)
T ss_dssp SSCBCTTCEEEEESTTSCCEEEECCCEE
T ss_pred cCCcCCCCEEEEEcCCCCcEEEEeHHeE
Confidence 4568999999999543223334444544
No 40
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=62.26 E-value=7.3 Score=23.17 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuy_A 16 SELPLKKGDVIYITREEP 33 (58)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CcCCCCCCCEEEEEEecC
Confidence 345689999999998653
No 41
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=60.62 E-value=3.6 Score=33.48 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=43.8
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEece---eeeeeeecCCcccCCceEEEEeeceeeccccc
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDI---NLKTKHVKKREEEEQGQIIKLKCDALLKRNGS 137 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVegv---N~~kkhvKp~~~~~~GgIi~~E~PIhiSnv~~ 137 (143)
.|.+|..+.+++|+++||.-.++++.. ++.++|.|- |-...+.- .+--++.-.--|+|++|.+
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL~-sgllLVtGP~~lNgVplrR~-----~qk~viaTstkIdIs~Vki 139 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQLQ-SGLLLITGPFKINGVPIRRV-----NQAYVIATSTKVDISKVNV 139 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEESS-SSSEEECCCCSSSCCCCEEE-----SSSSCEECSCCCSCSSCCC
T ss_pred cccCCCEEEEeccccCCcEEEEEEecC-CCeEEEcCCccccCCccEEe-----chhhEEecceEeecCcccc
Confidence 477899999999999999999999875 789999873 32221111 0113444555667777765
No 42
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=59.55 E-value=13 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=18.3
Q ss_pred ccceeeeCCEEEEEecCC-CCeEeEEEEE
Q 032297 66 HKMHVKAGDTVKVIAGCD-KGKIGEITKV 93 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d-KGK~G~V~~V 93 (143)
.--.++.||.|.+..|.+ .=..-+|.+|
T Consensus 88 ~A~~l~~GD~v~~~~~~~~~~~~~~V~~v 116 (145)
T 1at0_A 88 FADRIEEKNQVLVRDVETGELRPQRVVKV 116 (145)
T ss_dssp EGGGCCTTCEEEEECTTTCCEEEEEEEEE
T ss_pred EHHHCcCCCEEEEecCCCCCEEEEEEEEE
Confidence 345689999999998732 1234455555
No 43
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=58.18 E-value=6.2 Score=23.80 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 19 ~eLs~~~Gd~i~v~~~~~ 36 (59)
T 2g6f_X 19 DELSFSKGDVIHVTRVEE 36 (59)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CCcCCCCCCEEEEEEecC
Confidence 456689999999997543
No 44
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=57.30 E-value=9 Score=22.82 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 16 DEITITPGDKISLVARDT 33 (58)
T ss_dssp TBCCBCTTCCEEEEECCS
T ss_pred CcccCCCCCEEEEeEcCC
Confidence 356689999999997553
No 45
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=57.15 E-value=8.3 Score=29.92 Aligned_cols=47 Identities=34% Similarity=0.534 Sum_probs=32.7
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCCEEE----------EeceeeeeeeecCC
Q 032297 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVM----------VKDINLKTKHVKKR 115 (143)
Q Consensus 69 ~IkkGD~V~VIs------G----~dKGK~G~V~~V~~k~n~Vi----------VegvN~~kkhvKp~ 115 (143)
..++||.|-|.- | .+-|++|.|..|..+.--|+ .+-+|+.-.|+|++
T Consensus 33 ~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~s 99 (160)
T 3izc_U 33 VYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHS 99 (160)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEECCCSSSSCCCEEEEECTTSEEEC
T ss_pred HhcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEEEEEECCEeeeeEEEEeHHHcccc
Confidence 568999998853 2 27799999988766654444 45566666677664
No 46
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=57.13 E-value=6.4 Score=24.91 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.5
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 19 eLsf~~Gd~i~v~~~~~ 35 (68)
T 2ew3_A 19 ELGFKEGDIITLTNQID 35 (68)
T ss_dssp BCCBCTTCEEEEEEESS
T ss_pred ccCCCCCCEEEEEEecC
Confidence 55689999999998543
No 47
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.72 E-value=17 Score=23.14 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.6
Q ss_pred ccceeeeCCEEEEEe
Q 032297 66 HKMHVKAGDTVKVIA 80 (143)
Q Consensus 66 ~k~~IkkGD~V~VIs 80 (143)
..+.+++||.|.|+.
T Consensus 29 ~eLsf~~Gd~i~v~~ 43 (75)
T 2ege_A 29 GRLALRAGDVVMVYG 43 (75)
T ss_dssp CBCCBCTTCEEEEES
T ss_pred CcceECCCCEEEEeE
Confidence 456689999999996
No 48
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=55.31 E-value=14 Score=21.73 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 15 ~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 15 DEISIDPGDIITVIRGD 31 (54)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEEEec
Confidence 35668999999999865
No 49
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.02 E-value=14 Score=26.43 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=26.6
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCCEEEEe
Q 032297 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 69 ~IkkGD~V~VIs------G----~dKGK~G~V~~V~~k~n~ViVe 103 (143)
..++||.|-|.- | .+-||+|+|..|..+---|+|.
T Consensus 34 ~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn 78 (97)
T 3j21_R 34 EFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIK 78 (97)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEE
T ss_pred HhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEE
Confidence 468999998853 2 1789999999988876666654
No 50
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=54.96 E-value=16 Score=24.73 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=35.1
Q ss_pred eeeCCEEEEEecC--CCCeEeEEEEEEccCCEEEEeceeeee
Q 032297 70 VKAGDTVKVIAGC--DKGKIGEITKVFRHNSTVMVKDINLKT 109 (143)
Q Consensus 70 IkkGD~V~VIsG~--dKGK~G~V~~V~~k~n~ViVegvN~~k 109 (143)
|.+|-+|.|+.-+ +-|-+|.|.+|...+--|+.||-|--|
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDK 43 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDK 43 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCcee
Confidence 6789999999875 789999999999999999999988644
No 51
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=54.21 E-value=22 Score=22.57 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=13.3
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 27 eLs~~~Gd~i~v~~~~~ 43 (73)
T 2ebp_A 27 SLKLKKGDIIDIISKPP 43 (73)
T ss_dssp BCCBCSSCEEEEEECCS
T ss_pred ccCCCCCCEEEEEEeCC
Confidence 45589999999998543
No 52
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=53.73 E-value=8 Score=23.59 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLs~~~Gd~i~v~~~~~ 38 (64)
T 2ak5_A 21 DELSFSKGDVIHVTRVEE 38 (64)
T ss_dssp TBCCBCTTCEEEEEECCT
T ss_pred CcccCCCCCEEEEeEecC
Confidence 356689999999997543
No 53
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=53.71 E-value=7.9 Score=24.05 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=13.2
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 19 eLsf~~Gd~i~v~~~~~ 35 (67)
T 2bzy_A 19 ALALEVGDIVKVTRMNI 35 (67)
T ss_dssp BCCBCTTCEEEEEEECS
T ss_pred ccccCCCCEEEEEEecC
Confidence 45589999999987543
No 54
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.71 E-value=15 Score=23.43 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=14.2
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 32 ~eLsf~~Gd~i~v~~~~~ 49 (80)
T 2d8h_A 32 GDLNFQAGDRITVISKTD 49 (80)
T ss_dssp TBCEECTTCEEEEEECCS
T ss_pred CeeeEcCCCEEEEeECcC
Confidence 356689999999998653
No 55
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=53.38 E-value=12 Score=23.17 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (69)
T 1ruw_A 18 SELPLKKGDIVFISRDE 34 (69)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcccCCCCCEEEEEEec
Confidence 35568999999999754
No 56
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=52.96 E-value=8.5 Score=23.24 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 20 DELSFNANDIIDIIKED 36 (60)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 35668999999998754
No 57
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=52.62 E-value=11 Score=22.59 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 18 DELSFKAGDELTKLGE 33 (60)
T ss_dssp SBCCBCTTCEEEECSC
T ss_pred CcccCCCCCEEEEEEc
Confidence 3556899999999874
No 58
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=52.40 E-value=8.8 Score=23.25 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=12.5
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 22 ELSFKKGASLLLYHR 36 (60)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 456899999999874
No 59
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=51.92 E-value=16 Score=21.64 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 17 GELAFKRGDVITLINKD 33 (58)
T ss_dssp TBCCBCTTCEEEEEECS
T ss_pred CCcCCCCCCEEEEEEec
Confidence 35668999999999854
No 60
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=51.75 E-value=11 Score=28.26 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=22.8
Q ss_pred cceeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032297 67 KMHVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~----------dKGK~G~V~~V~ 94 (143)
.-.++.||+|.|..-. -+||+|+|..+.
T Consensus 34 ~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 34 KSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV 71 (126)
T ss_dssp SCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE
T ss_pred CCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe
Confidence 4568999999998654 689999998775
No 61
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.38 E-value=8.9 Score=24.46 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=12.5
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (78)
T 2yuo_A 23 ELGFRKNDIITIISQ 37 (78)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CccCCCCCEEEEEEe
Confidence 456899999999974
No 62
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.89 E-value=10 Score=23.47 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2k_A 22 DELYFEEGDIIYITDMS 38 (68)
T ss_dssp TBCCCCSSCEEEEEECS
T ss_pred CcccCCCCCEEEEEEcC
Confidence 35668999999999743
No 63
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=50.84 E-value=15 Score=23.27 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.7
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 33 ~eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKAE 49 (78)
T ss_dssp CCCCBCTTCEEEEEECC
T ss_pred CccCCCCCCEEEEEEcC
Confidence 45568999999999863
No 64
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=50.72 E-value=9.3 Score=24.11 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 28 ~eLs~~~Gd~i~v~~~~~ 45 (73)
T 3c0c_A 28 GELGFREGDLITLTNQID 45 (73)
T ss_dssp TBCCBCTTCEEEEEEECS
T ss_pred CCccCcCCCEEEEEEecC
Confidence 356689999999998543
No 65
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=50.69 E-value=18 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=29.1
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCCEEEEec
Q 032297 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMVKD 104 (143)
Q Consensus 69 ~IkkGD~V~VIs------G----~dKGK~G~V~~V~~k~n~ViVeg 104 (143)
..++||.|-|.- | .+-|++|+|..+..+-.-|+|..
T Consensus 33 ~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk 78 (96)
T 1vq8_Q 33 EFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVD 78 (96)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEE
T ss_pred HcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEee
Confidence 467999998874 3 27899999999998877777765
No 66
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=50.62 E-value=9.7 Score=23.03 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=13.4
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 20 eLs~~~Gd~i~v~~~~~ 36 (60)
T 1w70_A 20 ELNFKAGDVIFLLSRIN 36 (60)
T ss_dssp BCCBCTTCEEEEEEECS
T ss_pred CccCCCCCEEEEEEeCC
Confidence 45689999999997543
No 67
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.42 E-value=11 Score=24.11 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (76)
T 2epd_A 25 QELSFRRGDVLRLHER 40 (76)
T ss_dssp TBCEECTTCEEEEEEE
T ss_pred CccCCCCCCEEEEEEe
Confidence 3566899999999875
No 68
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=50.35 E-value=17 Score=22.44 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=13.1
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 26 eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 26 FLRLNPGDIVELTKA 40 (70)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCcCCCCEEEEEeC
Confidence 566899999999986
No 69
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.05 E-value=9.6 Score=23.98 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=12.7
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 24 ~eLs~~~Gd~i~v~~~ 39 (72)
T 2dl8_A 24 RELSFKKGASLLLYQR 39 (72)
T ss_dssp SBCCBCTTCEEEEEEE
T ss_pred CEeccCCCCEEEEEee
Confidence 3456899999999874
No 70
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=49.42 E-value=8.1 Score=24.08 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=13.1
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 24 eLs~~~Gd~i~v~~~~~ 40 (67)
T 2eyx_A 24 ALALEVGELVKVTKINV 40 (67)
T ss_dssp BCCBCSSEEEEEEEECT
T ss_pred ccccCCCCEEEEEEecC
Confidence 45589999999987543
No 71
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=49.16 E-value=8.9 Score=24.27 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.4
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 26 HLNFSKHDIITVLEQ 40 (74)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEec
Confidence 456899999999874
No 72
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=48.51 E-value=13 Score=22.50 Aligned_cols=17 Identities=6% Similarity=0.397 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (62)
T 2iim_A 21 GDLGFEKGEQLRILEQS 37 (62)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEcC
Confidence 35568999999999853
No 73
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=47.03 E-value=14 Score=23.05 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.5
Q ss_pred ccceeeeCCEEEEEe
Q 032297 66 HKMHVKAGDTVKVIA 80 (143)
Q Consensus 66 ~k~~IkkGD~V~VIs 80 (143)
..+.+++||.|.|+.
T Consensus 26 ~eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 26 QDLPFCKGDVLTIVA 40 (71)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CcCCCCCCCEEEEeE
Confidence 355689999999998
No 74
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=46.84 E-value=12 Score=22.48 Aligned_cols=15 Identities=13% Similarity=0.607 Sum_probs=12.5
Q ss_pred ccceeeeCCEEEEEe
Q 032297 66 HKMHVKAGDTVKVIA 80 (143)
Q Consensus 66 ~k~~IkkGD~V~VIs 80 (143)
..+.+++||.|.|+.
T Consensus 20 ~eLs~~~Gd~i~v~~ 34 (63)
T 3eg3_A 20 NTLSITKGEKLRVLG 34 (63)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 346689999999997
No 75
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=46.66 E-value=11 Score=29.63 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=29.3
Q ss_pred ccceeeeCCEEEEEecC------------CCCeEeEEEEEEccCCEEEEece
Q 032297 66 HKMHVKAGDTVKVIAGC------------DKGKIGEITKVFRHNSTVMVKDI 105 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~------------dKGK~G~V~~V~~k~n~ViVegv 105 (143)
..|-|++||.|.|+... +-|..|+.++|...+++ +|.|.
T Consensus 137 ~~~lV~rG~~V~i~~~~~g~~i~~~G~AL~~G~~Gd~IrVr~~Sgk-iv~g~ 187 (219)
T 3tee_A 137 QAWRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQ-IVSGT 187 (219)
T ss_dssp ECCSBCTTCEEEEEEECSSCEEEEEEEECSCBCTTSEEEEEETTSC-EEEEE
T ss_pred cccEEcCCCEEEEEEecCCEEEEEEEEEccccCCCCEEEEECCCCC-EEEEE
Confidence 34779999999998765 67888888888766555 44544
No 76
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=46.42 E-value=28 Score=29.31 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=28.0
Q ss_pred eeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 71 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 71 kkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
-.|.+..|++|+-||..|.|+-=.---++|+|+
T Consensus 85 CiGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~ 117 (284)
T 3dcl_A 85 CIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVH 117 (284)
T ss_dssp CBTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred ecCceeEEeecccCCCcceEecccCCeeeEEEE
Confidence 469999999999999999998776666777765
No 77
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=45.59 E-value=20 Score=28.75 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=22.9
Q ss_pred ccceeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032297 66 HKMHVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~----------dKGK~G~V~~V~ 94 (143)
..-+++.||+|.|..-. -+||+|+|..+.
T Consensus 127 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 127 ARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH 165 (219)
T ss_dssp SCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe
Confidence 34568999999996643 689999997774
No 78
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=45.11 E-value=1.2 Score=33.98 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=33.9
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccC------CEEEEeceeeee
Q 032297 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLKT 109 (143)
Q Consensus 70 IkkGD~V~VIsG~dKGK~G~V~~V~~k~------n~ViVegvN~~k 109 (143)
+++|-.|.|++|.+.|+...|++.+.+. +.++|-|+....
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP 50 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYP 50 (136)
T ss_dssp CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSS
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCC
Confidence 6889999999999999999999987665 378999986443
No 79
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=44.98 E-value=54 Score=22.36 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=29.3
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
...++.|.+|+++--...--+.+|+.|....+++.|.
T Consensus 17 ~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~~~v~VH 53 (88)
T 2eqm_A 17 GITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVH 53 (88)
T ss_dssp SCCCCSSCEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred cCcCCCCCEEEEEcCCCCeeEEEEEEEeccCCEEEEE
Confidence 4457899999999866677899999999887776553
No 80
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=44.69 E-value=13 Score=23.51 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 17 ~eLs~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 17 DELTIKEGDIVTLINK 32 (69)
T ss_dssp TBCCBCTTCEEEEEES
T ss_pred CccccCCCCEEEEEEc
Confidence 3566899999999975
No 81
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=44.49 E-value=15 Score=23.38 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (73)
T 2lcs_A 20 NELRLAEGDIVFISYKH 36 (73)
T ss_dssp TBCCBCTTCEEEEEEEE
T ss_pred CccCCcCCCEEEEEEEc
Confidence 35568999999998743
No 82
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=44.44 E-value=12 Score=22.71 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=12.7
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 23 DLSFKKGEKMKVLEEH 38 (65)
T ss_dssp CCCBCTTCEEEEEEEC
T ss_pred cCCCCCCCEEEEEEcC
Confidence 4558999999998743
No 83
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.35 E-value=14 Score=23.76 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=12.9
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 26 eLs~~~Gd~i~v~~~~ 41 (81)
T 2ysq_A 26 ELAFKAGDVIKVLDAS 41 (81)
T ss_dssp SCCCCTTCEEEEEECC
T ss_pred cCCCCCCCEEEEEEEc
Confidence 4558999999999754
No 84
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=44.07 E-value=22 Score=22.65 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.=.+
T Consensus 28 ~eLs~~~Gd~i~vl~~~~ 45 (79)
T 1uhc_A 28 NELSVSANQKLKILEFKD 45 (79)
T ss_dssp SBCCBCTTCEEEEEESCC
T ss_pred CccCCCCCCEEEEEECCC
Confidence 355689999999998543
No 85
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=43.78 E-value=16 Score=29.23 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.2
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEc
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFR 95 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~ 95 (143)
+++.||.|++ .|..|+|.+|.-
T Consensus 128 pf~vGD~I~i-----~~~~G~V~~I~l 149 (285)
T 3udc_A 128 QFSVGDYVTI-----NGISGTVEEIGL 149 (285)
T ss_dssp SCCTTCEEEE-----TTEEEEEEEECS
T ss_pred CccCCCEEEE-----CCEEEEEEEeee
Confidence 4899999999 378999988753
No 86
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=43.60 E-value=14 Score=23.10 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 24 ~eLs~~~Gd~i~v~~~~ 40 (73)
T 2k9g_A 24 DELTIKEGDIVTLINKD 40 (73)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CeeeECCCCEEEEEECC
Confidence 35568999999999753
No 87
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=43.35 E-value=19 Score=28.70 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=28.0
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
-+.++.||.|.|..|...--.++|..+.++.-.+.|.
T Consensus 33 VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~ 69 (257)
T 1vhy_A 33 VLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEIL 69 (257)
T ss_dssp TSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEEC
T ss_pred HhccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEE
Confidence 4678999999999887555678899888776554443
No 88
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=43.30 E-value=14 Score=21.96 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=12.2
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 17 ELRLAEGDIVFISYK 31 (59)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEc
Confidence 456899999999864
No 89
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=43.23 E-value=15 Score=22.88 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=12.2
Q ss_pred ccceeeeCCEEEEEe
Q 032297 66 HKMHVKAGDTVKVIA 80 (143)
Q Consensus 66 ~k~~IkkGD~V~VIs 80 (143)
..+.+++||.|.|+.
T Consensus 23 ~eLs~~~Gd~i~v~~ 37 (69)
T 1uhf_A 23 GDLTFTEGEEILVTQ 37 (69)
T ss_dssp SBCCBCTTCEEEECE
T ss_pred CccCCCCCCEEEEEE
Confidence 355689999999986
No 90
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=43.22 E-value=11 Score=29.71 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=42.6
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEec---eeeeeeeecCCcccCCceEEEEeeceeeccccc
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD---INLKTKHVKKREEEEQGQIIKLKCDALLKRNGS 137 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVeg---vN~~kkhvKp~~~~~~GgIi~~E~PIhiSnv~~ 137 (143)
.|.+|..+.+++|.++||.-.+++... ++-++|-| +|-..-.. - .+--++.-.--|++|+|.+
T Consensus 33 Si~pGtvlIil~Gr~~GkrvVfLKql~-sglllVTGP~~lNgvplrR-~----~q~~vIaTstkidis~vki 98 (176)
T 3izc_G 33 SLVPGTVLILLAGRFRGKRVVYLKHLE-DNTLLISGPFKVNGVPLRR-V----NARYVIATSTKVSVEGVNV 98 (176)
T ss_dssp HCCCCSCEECCSSSSSCCCBEEEEESS-SSSEEEECCCSSSCCCCEE-E----SSSSCEECSCCCSSSSCCC
T ss_pred cCCCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCceecCCccee-e----ecceEEeeeeeeecccccc
Confidence 477899999999999999999999985 67888876 33211110 0 1113444555667777765
No 91
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.75 E-value=15 Score=23.07 Aligned_cols=16 Identities=6% Similarity=0.412 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 23 ~eLsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 23 DELSFPEGAIIRILNK 38 (73)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEC
Confidence 3456899999999975
No 92
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=42.48 E-value=10 Score=29.45 Aligned_cols=47 Identities=34% Similarity=0.646 Sum_probs=32.0
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCCEEEEe----------ceeeeeeeecCC
Q 032297 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMVK----------DINLKTKHVKKR 115 (143)
Q Consensus 69 ~IkkGD~V~VIs------G----~dKGK~G~V~~V~~k~n~ViVe----------gvN~~kkhvKp~ 115 (143)
..++||.|-|.- | .+-|++|+|..+..+-..|+|. -+|+.--|++++
T Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v~~kil~Kri~vr~eHik~s 99 (160)
T 2zkr_q 33 IYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHS 99 (160)
T ss_dssp CCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECCSSCCSCEEEEECGGGEEEC
T ss_pred HcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEeeCCeeeeeEEEcCHHHcCcc
Confidence 467999998763 3 2779999998776665555554 455555577764
No 93
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=42.41 E-value=21 Score=28.37 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=27.8
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEE
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViV 102 (143)
-+.++.||+|.|..|...=-.++|.++.++.-.+.|
T Consensus 31 VLR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 66 (251)
T 4e8b_A 31 VLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKV 66 (251)
T ss_dssp TSCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEE
T ss_pred hCcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEE
Confidence 367899999999999866667899999777544433
No 94
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=42.38 E-value=45 Score=21.02 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=26.7
Q ss_pred cceeeeCCEEEEEe-cCCCCeEeEEEEEEccCCEEEEe
Q 032297 67 KMHVKAGDTVKVIA-GCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 67 k~~IkkGD~V~VIs-G~dKGK~G~V~~V~~k~n~ViVe 103 (143)
....++||.|...- .+.+=-.++|++|..+++.+.|.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~ 43 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAIT 43 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 34568999999985 44444679999999876665443
No 95
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.16 E-value=24 Score=22.19 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 25 ~eLs~~~Gd~i~v~~~~ 41 (77)
T 2enm_A 25 NELTVTEGEIITVTNPN 41 (77)
T ss_dssp SBCCCCTTCEEEEEESC
T ss_pred CeecCCCCCEEEEeEcc
Confidence 34568999999999753
No 96
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=42.10 E-value=29 Score=20.69 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 18 GDLPFRKGDVITILKKS 34 (60)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CEeeEcCCCEEEEEEeC
Confidence 35568999999999764
No 97
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=42.09 E-value=17 Score=29.32 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=22.2
Q ss_pred cceeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032297 67 KMHVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~----------dKGK~G~V~~V~ 94 (143)
.-+++.||+|.|..-. -+||+|+|..+.
T Consensus 139 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 139 SPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY 176 (229)
T ss_dssp CCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEe
Confidence 3458999999996643 689999998774
No 98
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=41.95 E-value=20 Score=24.72 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=20.0
Q ss_pred eeCCEEEEEec--------------CCCCeEeEEEEEEcc
Q 032297 71 KAGDTVKVIAG--------------CDKGKIGEITKVFRH 96 (143)
Q Consensus 71 kkGD~V~VIsG--------------~dKGK~G~V~~V~~k 96 (143)
+.||+|.|.+. +-+|.+|+|.++..+
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmEGeV~~~v~~ 41 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTE 41 (75)
T ss_dssp CTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECSE
T ss_pred CCCCEEEEcccEEEEeCCccCCCCcccccCEEEEEEEEee
Confidence 57899988753 157999999998754
No 99
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=41.55 E-value=19 Score=29.02 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.7
Q ss_pred cceeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032297 67 KMHVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~----------dKGK~G~V~~V~ 94 (143)
.-.++.||+|.|..-. -+||+|+|..+.
T Consensus 136 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH 173 (226)
T ss_dssp CCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEe
Confidence 4458999999998653 589999998775
No 100
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.85 E-value=14 Score=24.03 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=12.1
Q ss_pred cceeeeCCEEEEEe
Q 032297 67 KMHVKAGDTVKVIA 80 (143)
Q Consensus 67 k~~IkkGD~V~VIs 80 (143)
.+.+++||.|.|+.
T Consensus 24 eLsf~~Gd~i~v~~ 37 (85)
T 2dlp_A 24 LLSFHRGDLIKLLP 37 (85)
T ss_dssp BCCBCTTCEEEECC
T ss_pred CccCcCCCEEEEEE
Confidence 56689999999996
No 101
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=40.13 E-value=20 Score=23.01 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=13.4
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.=.+
T Consensus 24 ELsf~~Gd~i~Vl~~~~ 40 (69)
T 1nm7_A 24 EVALKKGDLMAILSKKD 40 (69)
T ss_dssp CCCCCTTCEEEECCSSS
T ss_pred ccCCCCCCEEEEEecCC
Confidence 45689999999997543
No 102
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=39.99 E-value=32 Score=20.77 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (64)
T 2jte_A 21 DELTFREGEIIHLISK 36 (64)
T ss_dssp SBCCBCTTCEEEEEES
T ss_pred CccCCCCCCEEEEEEC
Confidence 3566899999999975
No 103
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.99 E-value=23 Score=22.56 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=13.8
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 29 eLs~~~Gd~i~v~~~~~ 45 (78)
T 2dl5_A 29 ELTIEEHEVLEVIEDGD 45 (78)
T ss_dssp BCCBCSSEEEEEEECCS
T ss_pred CCCCCCCCEEEEEeccC
Confidence 56689999999998653
No 104
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.83 E-value=13 Score=23.02 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=12.8
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (68)
T 2dmo_A 23 ELQVMPGNIVFVLKKG 38 (68)
T ss_dssp SCCCCTTCEEEECEEC
T ss_pred CCCCCCCCEEEEEEeC
Confidence 4568999999998643
No 105
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=39.55 E-value=20 Score=22.67 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=13.2
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 31 eLs~~~Gd~i~v~~~~ 46 (80)
T 2v1r_A 31 EVALKKGDLMAILSKK 46 (80)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred EecCCCCCEEEEEECC
Confidence 5668999999999854
No 106
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.21 E-value=26 Score=22.21 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 29 ~eLsf~~Gd~i~v~~~~~ 46 (76)
T 2csi_A 29 AELTFCTGDIITVFGEID 46 (76)
T ss_dssp TSCCCCTTCEEEEESSCC
T ss_pred CcccCCCCCEEEEeEecC
Confidence 355689999999997543
No 107
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.17 E-value=17 Score=23.22 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 32 ~eLs~~~Gd~i~v~~~~ 48 (79)
T 1x69_A 32 DEISFDPDDIITNIEMI 48 (79)
T ss_dssp SBCCCCTTCEEEEEEEC
T ss_pred CCcCcCCCCEEEEeEec
Confidence 35568999999998653
No 108
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=39.16 E-value=1.2 Score=33.88 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=33.2
Q ss_pred eeeCCEEEEEecCCCCeEeEEEEEEccC------CEEEEeceeee
Q 032297 70 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLK 108 (143)
Q Consensus 70 IkkGD~V~VIsG~dKGK~G~V~~V~~k~------n~ViVegvN~~ 108 (143)
+++|-.|.|++|.+.|+...|++.+.+. +.++|-|+...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdry 49 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKY 49 (136)
T ss_dssp CCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTT
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccC
Confidence 6889999999999999999999987665 37899998643
No 109
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=39.13 E-value=30 Score=21.24 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=13.0
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (71)
T 2jt4_A 22 ELTIKSGDKVYILDDK 37 (71)
T ss_dssp BCCBCTTCEEEEEESS
T ss_pred cccCCCCCEEEEEECC
Confidence 4568999999999843
No 110
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=38.95 E-value=16 Score=23.53 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 32 ~eLsf~~Gd~i~Vl~~ 47 (72)
T 2l0a_A 32 NELTFKAGEIITVLDD 47 (72)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CccCCCCCCEEEEEEe
Confidence 3556899999999973
No 111
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q
Probab=38.68 E-value=3.5 Score=30.56 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=32.3
Q ss_pred eeeeCCEEEEEe------c----CCCCeEeEEEEEEccCC----------EEEEeceeeeeeeecCCc
Q 032297 69 HVKAGDTVKVIA------G----CDKGKIGEITKVFRHNS----------TVMVKDINLKTKHVKKRE 116 (143)
Q Consensus 69 ~IkkGD~V~VIs------G----~dKGK~G~V~~V~~k~n----------~ViVegvN~~kkhvKp~~ 116 (143)
..++||.|-|.- | .+-||+|+|..|..+-- +++.+-+|+.-.|+|++.
T Consensus 32 ~yk~GD~VdIk~~gsVqKGmPHk~YHGKTGrV~nvt~~AvgivVnkqv~gKil~KrInVriEHik~sk 99 (116)
T 3jyw_Q 32 VYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSK 99 (116)
T ss_dssp CCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEECCCSSSSCCCEEEECGGGBCCCC
T ss_pred HhCCCCEEEEeccCccCCCCCCcccCCCCeEEEeecCcEEEEEEEEEECCeeeeeEEEECHhHCcccc
Confidence 467999998743 2 27799999876555544 444456777777888753
No 112
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.34 E-value=17 Score=22.56 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (70)
T 2da9_A 22 DELTIKEGDIVTLINK 37 (70)
T ss_dssp TBCCCCTTEEEEEEEC
T ss_pred CEeeEcCCCEEEEEEC
Confidence 3566899999999975
No 113
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=38.28 E-value=29 Score=24.87 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=34.4
Q ss_pred eeeeeeee-eeeeeccCCCCCcc-------cccceeeeCCEEEEEecCCCCeEeEEEEEEccC
Q 032297 43 CLIVVRLK-RWERKECKPNSLPV-------LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN 97 (143)
Q Consensus 43 ~~~~~~~k-~Werk~~kpn~lp~-------~~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~ 97 (143)
+.++-.+- .|.+-+|.-...-+ .....|.+||.|.|-.-++-...|.|+.+++.+
T Consensus 36 G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~ 98 (117)
T 2oqk_A 36 GQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTPD 98 (117)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECCHH
T ss_pred EEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEechH
Confidence 55555555 67777664322111 124557799999997655445579999888753
No 114
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=38.19 E-value=21 Score=22.53 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.1
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 25 eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 25 ELSFKRGDILKVLNEE 40 (74)
T ss_dssp BCCBCTTCEEECCBCS
T ss_pred eeeEcCCCEEEEeEec
Confidence 5568999999999754
No 115
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=38.19 E-value=16 Score=23.49 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=12.9
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 41 eLs~~~Gd~i~v~~~~ 56 (86)
T 2oi3_A 41 DLSFQKGDQMVVLEES 56 (86)
T ss_dssp CCCCCTTCEEEEEEES
T ss_pred cCcCCCCCEEEEEEcC
Confidence 4568999999998744
No 116
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.95 E-value=32 Score=22.92 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=12.3
Q ss_pred ccceeeeCCEEEEEe
Q 032297 66 HKMHVKAGDTVKVIA 80 (143)
Q Consensus 66 ~k~~IkkGD~V~VIs 80 (143)
..+.+++||.|.|+.
T Consensus 40 ~eLsf~~Gd~i~vl~ 54 (97)
T 2csq_A 40 EELPFKEGQIIKVYG 54 (97)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 356689999999994
No 117
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=37.56 E-value=25 Score=28.12 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=26.4
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEE
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM 101 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~Vi 101 (143)
-+.++.||.|.+..|...--.++|..+.++.-.+-
T Consensus 30 VLRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~ 64 (257)
T 3kw2_A 30 VLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVS 64 (257)
T ss_dssp TSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEE
T ss_pred hccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEE
Confidence 35689999999999985556788988877654443
No 118
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=37.47 E-value=22 Score=23.22 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=13.6
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 31 eLsf~~Gd~i~v~~~~~ 47 (92)
T 1jqq_A 31 EVALKKGDLMAILSKKD 47 (92)
T ss_dssp BCCBCTTCEEEEEEEEC
T ss_pred CcCCCCCCEEEEEECCC
Confidence 55689999999998643
No 119
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=37.47 E-value=27 Score=27.99 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=26.9
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEE
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTV 100 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~V 100 (143)
.-+.++.||.|.|..|...=-.++|..+.++.-.+
T Consensus 33 ~VLRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~ 67 (268)
T 1vhk_A 33 NVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSC 67 (268)
T ss_dssp TTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEE
T ss_pred HhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEE
Confidence 34678999999999998777778898887664333
No 120
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=37.30 E-value=27 Score=21.58 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=11.6
Q ss_pred cceeeeCCEEEEEe
Q 032297 67 KMHVKAGDTVKVIA 80 (143)
Q Consensus 67 k~~IkkGD~V~VIs 80 (143)
.+.+++||.|.|+.
T Consensus 23 eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 23 EISFEQNEILQVSD 36 (70)
T ss_dssp BCCBCTTCEEEEEC
T ss_pred cccCCCCCEEEEEE
Confidence 55689999999985
No 121
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=37.30 E-value=24 Score=21.84 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.3
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (68)
T 1wxt_A 23 ELTVVQGEKLEVLDH 37 (68)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCCCCCCEEEEEEc
Confidence 556899999999863
No 122
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=37.25 E-value=33 Score=25.90 Aligned_cols=33 Identities=9% Similarity=0.149 Sum_probs=25.2
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCC
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 98 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n 98 (143)
.+..|++||.|.|---++.-..|.|+.++...+
T Consensus 66 k~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~de 98 (143)
T 1d7q_A 66 KKVWINTSDIILVGLRDYQDNKADVILKYNADE 98 (143)
T ss_dssp GSCCCCTTCEEEEECSSSSSSCCEEEEEECTTT
T ss_pred eeEEecCCCEEEEeeccCCCCeEEEEEEeCHHH
Confidence 356699999999976665555599999987654
No 123
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.18 E-value=32 Score=22.14 Aligned_cols=16 Identities=25% Similarity=0.798 Sum_probs=12.9
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 33 eLsf~~Gd~i~v~~~~ 48 (81)
T 1x6g_A 33 ELAFRKGDVVTILEAC 48 (81)
T ss_dssp CCCBCTTCEEEEEECC
T ss_pred CCCCCCCCEEEEEecc
Confidence 4558999999999853
No 124
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=36.98 E-value=24 Score=20.99 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=14.1
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (58)
T 2bz8_A 16 DELTISVGEIITNIRKED 33 (58)
T ss_dssp TBCCBCTTCEEEEEECCT
T ss_pred CEeeECCCCEEEEEEeCC
Confidence 355689999999998643
No 125
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=36.87 E-value=18 Score=25.75 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=23.1
Q ss_pred cceeeeCCEEEEEecCCC-CeEeEEEEEEccC
Q 032297 67 KMHVKAGDTVKVIAGCDK-GKIGEITKVFRHN 97 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dK-GK~G~V~~V~~k~ 97 (143)
+..|++||.|.|---++. -..|.|+.++..+
T Consensus 56 ~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~d 87 (102)
T 1jt8_A 56 RIWVREGDVVIVKPWEVQGDQKCDIIWRYTKT 87 (102)
T ss_dssp HHCCCSCEEEEECCBCCTTSEEEEEEEESSCS
T ss_pred eEEecCCCEEEEEeccCCCCceEEEEEEeCHH
Confidence 456999999999665554 5669998887653
No 126
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=36.78 E-value=22 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=12.6
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 22 ELNFEKGETMEVIEK 36 (71)
T ss_dssp BCCCCSSCCEEEEEC
T ss_pred cccCCCCCEEEEEEC
Confidence 456899999999985
No 127
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=36.31 E-value=38 Score=19.99 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=12.6
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 18 eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 18 ELTIKSGDKVYILDD 32 (60)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred CccCCCCCEEEEEeC
Confidence 556899999999984
No 128
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=36.24 E-value=26 Score=27.76 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=27.9
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEE
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViV 102 (143)
.-+.++.||.|.|..|...--.++|..+.++.-.+.+
T Consensus 37 ~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i 73 (234)
T 1z85_A 37 RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKI 73 (234)
T ss_dssp HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred HhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEE
Confidence 3467899999999988866667789888776544443
No 129
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=36.06 E-value=69 Score=25.02 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=36.9
Q ss_pred eeeeeccCCCCCcccccceeeeCCEEEEEec---CCCCeEeEEEEEEccCCEEEEeceeee
Q 032297 51 RWERKECKPNSLPVLHKMHVKAGDTVKVIAG---CDKGKIGEITKVFRHNSTVMVKDINLK 108 (143)
Q Consensus 51 ~Werk~~kpn~lp~~~k~~IkkGD~V~VIsG---~dKGK~G~V~~V~~k~n~ViVegvN~~ 108 (143)
-|++.+..+...| +.||.|+--.| .--|.++.|++|. .+.|.|-.-|..
T Consensus 100 ~l~~y~Ng~~~~P-------~~Gdl~V~~~g~~~~~yGHVAvV~~V~--~~~i~i~EQN~~ 151 (197)
T 3a2z_A 100 PLQAFPNGSPRAP-------VAGALLIWDKGGEFKDTGHVAIITQLH--GNKVRIAEQNVI 151 (197)
T ss_dssp ECEEEETTCSSCC-------CTTCEEEECSCGGGTTTCEEEEEEEEC--SSEEEEECSSSC
T ss_pred ceEEEccCCCCCC-------CCCeEEEECCCCcCCCCccEEEEEEEc--CCeEEEEecccC
Confidence 4777777777777 89997766443 3589999999996 568887777754
No 130
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.49 E-value=28 Score=22.49 Aligned_cols=17 Identities=0% Similarity=0.241 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 34 ~eLs~~~Gd~i~v~~~~ 50 (85)
T 2yuq_A 34 QELALRRNEEYCLLDSS 50 (85)
T ss_dssp SBCCCCBTEEEEEEECC
T ss_pred CcCCCCCCCEEEEEEec
Confidence 35568999999999754
No 131
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=35.40 E-value=26 Score=23.42 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=12.8
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 45 ELsf~~GD~I~Vl~~ 59 (89)
T 2rf0_A 45 ELTLRRGDRVQVLSQ 59 (89)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred ccccCCCCEEEEEec
Confidence 556899999999985
No 132
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=35.27 E-value=20 Score=21.50 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=12.3
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 17 ELSVMKDDVLEILDD 31 (60)
T ss_dssp BCCBCTTCEEEECGG
T ss_pred cccCCCCCEEEEEEc
Confidence 456899999999874
No 133
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=34.98 E-value=32 Score=21.23 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=12.6
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 24 eLs~~~Gd~i~v~~~ 38 (68)
T 2k2m_A 24 ELSVKQRDVLEVLDD 38 (68)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cccCCCCCEEEEEEc
Confidence 556899999999974
No 134
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.93 E-value=32 Score=24.72 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=22.4
Q ss_pred cceeeeCCEEEEEecCCC-CeEeEEEEEEcc
Q 032297 67 KMHVKAGDTVKVIAGCDK-GKIGEITKVFRH 96 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dK-GK~G~V~~V~~k 96 (143)
...|++||.|.|---++- -..|.|+.++++
T Consensus 51 ~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~ 81 (111)
T 2dgy_A 51 NIWIKRGDFLIVDPIEEGEKVKAEISFVLCK 81 (111)
T ss_dssp CCCCCSSCEEEEEECSSCSSCCEEEEEECCH
T ss_pred cEEEcCCCEEEEEecccCCcceEEEEEEeCH
Confidence 456999999999765544 456888877765
No 135
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=34.71 E-value=36 Score=22.14 Aligned_cols=16 Identities=25% Similarity=0.572 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 32 EELNFEKGETMEVIEK 47 (91)
T ss_dssp SBCCCCTTCEEEEEEC
T ss_pred CcccCCCCCEEEEEEC
Confidence 3556899999999975
No 136
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=34.68 E-value=26 Score=22.43 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=15.2
Q ss_pred ccceeeeCCEEEEEecCCCC
Q 032297 66 HKMHVKAGDTVKVIAGCDKG 85 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKG 85 (143)
..+.+++||.|.|+.-.+.|
T Consensus 25 ~eLsf~~Gd~i~v~~~~~~~ 44 (80)
T 2i0n_A 25 SLLPFKRNDIITITFKDQEN 44 (80)
T ss_dssp SSCCBCSSEEEEEEEESSSS
T ss_pred CCcCCCCCCEEEEEEecCCC
Confidence 34568999999999865544
No 137
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=34.19 E-value=11 Score=23.71 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=12.2
Q ss_pred ccceeeeCCEEEEEe
Q 032297 66 HKMHVKAGDTVKVIA 80 (143)
Q Consensus 66 ~k~~IkkGD~V~VIs 80 (143)
..+.+++||.|.|+.
T Consensus 25 ~eLsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 25 SELSFTAGTVFDNVH 39 (72)
T ss_dssp SBCCBCTTCEEBSCC
T ss_pred CEeCCcCCCEEEEEE
Confidence 356689999999886
No 138
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=33.65 E-value=27 Score=27.66 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.9
Q ss_pred eeeeCCEEEEEecC----------CCCeEeEEEEEE
Q 032297 69 HVKAGDTVKVIAGC----------DKGKIGEITKVF 94 (143)
Q Consensus 69 ~IkkGD~V~VIsG~----------dKGK~G~V~~V~ 94 (143)
.++.||+|.|..=. -+||+|+|..+.
T Consensus 118 ~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~ 153 (206)
T 4fm4_B 118 GFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGIS 153 (206)
T ss_dssp CCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEC
T ss_pred CCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEe
Confidence 48999999997643 578999998774
No 139
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.59 E-value=39 Score=20.76 Aligned_cols=16 Identities=6% Similarity=0.316 Sum_probs=12.8
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~vl~~~ 38 (70)
T 2ct4_A 23 TISMAEGEDLSLMEED 38 (70)
T ss_dssp CCCBCTTCEEEEEECC
T ss_pred cCCCCCCCEEEEEecc
Confidence 4568999999999754
No 140
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=33.58 E-value=28 Score=20.66 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 15 ~eLs~~~Gd~i~v~~~~ 31 (58)
T 1jo8_A 15 NELTFVENDKIINIEFV 31 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcccCCCCEEEEEEec
Confidence 35568999999999853
No 141
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=33.42 E-value=91 Score=19.89 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=27.0
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEE
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViV 102 (143)
.-.++.|.+++++.-...--..+|++|....+++.|
T Consensus 10 ~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~~~~~~V 45 (69)
T 3sd4_A 10 GISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLI 45 (69)
T ss_dssp TCCCSTTCEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CCCcCCCCEEEEEECCCCccccEEEEEeccCCEEEE
Confidence 345799999999866555578999999766666644
No 142
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=33.41 E-value=57 Score=26.54 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=26.0
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEE---EEeceee
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTV---MVKDINL 107 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~V---iVegvN~ 107 (143)
...+||.|.+-... +..|.|.+|.+.+|.+ ++.++.+
T Consensus 50 ~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~anvD~ 89 (307)
T 1t9h_A 50 TPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQ 89 (307)
T ss_dssp CCCBTCEEEEECCT--TSCEEEEEECCCSCEETTTTEECCCE
T ss_pred CCCCCeEEEEEEcC--CCceEEEEEcchhhhhhHHHHHhCCE
Confidence 35699999986433 3479999999988776 3454443
No 143
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=33.34 E-value=25 Score=21.19 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.0
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 21 eLs~~~Gd~i~v~~~~ 36 (62)
T 1k4u_S 21 DLEFQEGDIILVLSKV 36 (62)
T ss_dssp BCCBCSSCEEEEEEES
T ss_pred CccCCCCCEEEEEEeC
Confidence 4568999999999753
No 144
>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}
Probab=33.31 E-value=32 Score=21.30 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 26 ~eLs~~~Gd~i~v~~~ 41 (74)
T 2m0y_A 26 DELSLQIGDTVHILET 41 (74)
T ss_dssp SBCCEETTEEEEEEEB
T ss_pred CcccCCCCCEEEEEEc
Confidence 3566899999999874
No 145
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=32.77 E-value=22 Score=22.44 Aligned_cols=15 Identities=7% Similarity=0.355 Sum_probs=12.4
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 20 ELsf~~Gd~i~vl~~ 34 (67)
T 2b86_A 20 ELDIKKNERLWLLDD 34 (67)
T ss_dssp SCCBCTTCEEEEEEC
T ss_pred ccccCCCCEEEEEec
Confidence 456899999999974
No 146
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=32.73 E-value=30 Score=20.36 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 18 DELTFKEGDTIIVHQKD 34 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 34568999999998754
No 147
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=32.61 E-value=26 Score=22.21 Aligned_cols=19 Identities=32% Similarity=0.791 Sum_probs=14.4
Q ss_pred ccceeeeCCEEEEEecCCC
Q 032297 66 HKMHVKAGDTVKVIAGCDK 84 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dK 84 (143)
..+.+++||.|.|+.-.+.
T Consensus 21 ~ELs~~~Gd~i~v~~~~~~ 39 (65)
T 2lj0_A 21 DELELRDGDIVDVMEKCDD 39 (65)
T ss_dssp TBCCBCTTCEEEEEEECTT
T ss_pred CCcCCCCCCEEEEeEeCCC
Confidence 3566899999999875443
No 148
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=32.46 E-value=33 Score=21.01 Aligned_cols=16 Identities=13% Similarity=0.569 Sum_probs=12.7
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (70)
T 2cuc_A 22 EELDLQKGEGIRVLGK 37 (70)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CcCCCCCCCEEEEEEe
Confidence 3456899999999864
No 149
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=32.45 E-value=81 Score=19.37 Aligned_cols=34 Identities=21% Similarity=0.044 Sum_probs=24.2
Q ss_pred eeeCCEEEEEe-cCCCCeEeEEEEEEccCCEEEEe
Q 032297 70 VKAGDTVKVIA-GCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 70 IkkGD~V~VIs-G~dKGK~G~V~~V~~k~n~ViVe 103 (143)
+++||.|...- .+.+=-.++|+++...++.+.|.
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~ 38 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 38 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 57899998884 34445779999998755555443
No 150
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=32.29 E-value=30 Score=20.43 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1uti_A 16 DELGFRSGEVVEVLDSS 32 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCCCCCCCCEEEEEEEC
Confidence 35668999999999754
No 151
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=32.28 E-value=30 Score=20.40 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=12.9
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (57)
T 1cka_A 17 DLPFKKGDILRIRDKP 32 (57)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred CCCCCCCCEEEEEEec
Confidence 4568999999999753
No 152
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.95 E-value=21 Score=23.34 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 32 ~eLsf~~Gd~i~v~~~ 47 (90)
T 2yup_A 32 VELSFRKGEHICLIRK 47 (90)
T ss_dssp SBCCCCTTCEEEESSC
T ss_pred CcCCCCCCCEEEEEEE
Confidence 3566899999999974
No 153
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=31.92 E-value=40 Score=21.02 Aligned_cols=16 Identities=6% Similarity=0.358 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (72)
T 2jw4_A 22 QELDIKKNERLWLLDD 37 (72)
T ss_dssp TSCCCCTTCEEEEEEC
T ss_pred CcccCCCCCEEEEEEC
Confidence 3456899999999974
No 154
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=31.49 E-value=31 Score=20.79 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=13.0
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 21 eLs~~~Gd~i~v~~~~ 36 (62)
T 1uj0_A 21 ELTFKHGELITVLDDS 36 (62)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEeC
Confidence 4568999999999843
No 155
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=31.30 E-value=29 Score=21.28 Aligned_cols=19 Identities=16% Similarity=0.581 Sum_probs=14.5
Q ss_pred ccceeeeCCEEEEEecCCC
Q 032297 66 HKMHVKAGDTVKVIAGCDK 84 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dK 84 (143)
..+.+++||.|.|+.-.+.
T Consensus 28 ~eLs~~~Gd~i~v~~~~~~ 46 (72)
T 4glm_A 28 NELDFEVGDKIRILATLED 46 (72)
T ss_dssp TBCCBCTTCEEEEEEECST
T ss_pred CcCCCCCCCEEEEEEccCC
Confidence 3566899999999975543
No 156
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=31.18 E-value=32 Score=20.23 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (58)
T 2vwf_A 17 GELGFRRGDFIHVMDNS 33 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEcC
Confidence 35668999999999853
No 157
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=31.07 E-value=61 Score=25.23 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=31.4
Q ss_pred ccceeeeCCEEEEEecC----CCCeEeEEEEEEccCCEEEEecee
Q 032297 66 HKMHVKAGDTVKVIAGC----DKGKIGEITKVFRHNSTVMVKDIN 106 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~----dKGK~G~V~~V~~k~n~ViVegvN 106 (143)
....+++||.|-.-... +-=-.++|++++.++++..|+|.-
T Consensus 41 ~~~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~~~~rYeV~D~d 85 (180)
T 3mea_A 41 GDYVARPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDID 85 (180)
T ss_dssp TTCCCCTTCEEEEEEECCC--EEEEEEEEEEEETTTTEEEEEECC
T ss_pred CCcccCCCCEEEEEcCCCCCCccEEEEEEEEEcCCCCEEEEecCC
Confidence 45568899999887643 234578999999999999998874
No 158
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=31.04 E-value=36 Score=20.74 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=11.9
Q ss_pred ceeeeCCEEEEEec
Q 032297 68 MHVKAGDTVKVIAG 81 (143)
Q Consensus 68 ~~IkkGD~V~VIsG 81 (143)
+.+++||.+.|+..
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 25 LSFKEGDLITLLVP 38 (67)
T ss_dssp CCBCTTCEEEECSS
T ss_pred ccCCCCCEEEEeec
Confidence 56899999999964
No 159
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=30.88 E-value=46 Score=21.28 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=12.4
Q ss_pred ccceeeeCCEEEEEe
Q 032297 66 HKMHVKAGDTVKVIA 80 (143)
Q Consensus 66 ~k~~IkkGD~V~VIs 80 (143)
..+.+++||.|.|+.
T Consensus 20 ~eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 20 EDIDLHLGDILTVNK 34 (83)
T ss_dssp TBCCBCTTCEEEEEH
T ss_pred CccccCCCCEEEEee
Confidence 456689999999994
No 160
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=30.75 E-value=22 Score=24.33 Aligned_cols=28 Identities=32% Similarity=0.595 Sum_probs=18.1
Q ss_pred eccCCCCCccc-------ccceeeeCCEEEEEecC
Q 032297 55 KECKPNSLPVL-------HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 55 k~~kpn~lp~~-------~k~~IkkGD~V~VIsG~ 82 (143)
-.+++..||.+ ...-+++||.|+|++-.
T Consensus 29 y~i~~~qLP~I~~~DPvar~~G~k~GdVvkI~R~S 63 (77)
T 1eik_A 29 LDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKS 63 (77)
T ss_dssp TTCCTTTSCCCBTTSHHHHGGGCCTTCEEEEEEEE
T ss_pred cCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEECC
Confidence 34556666653 34577888888887754
No 161
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=30.70 E-value=33 Score=21.22 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=13.5
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (65)
T 2nwm_A 17 ELTLQKGDIVYIHKEVD 33 (65)
T ss_dssp BCCBCTTCEEEEEECCT
T ss_pred ccCCcCCCEEEEEEecC
Confidence 45689999999997543
No 162
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=30.43 E-value=23 Score=28.36 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=33.3
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEc--------cCCEEEEeceeeeeeeecCCcccCCceEEEEeeceeec
Q 032297 68 MHVKAGDTVKVIAGCDKGKIGEITKVFR--------HNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLK 133 (143)
Q Consensus 68 ~~IkkGD~V~VIsG~dKGK~G~V~~V~~--------k~n~ViVegvN~~kkhvKp~~~~~~GgIi~~E~PIhiS 133 (143)
-+++.||.|++ .|..|.|.+|.- ++..++|-+-.+.+..+.-... .....++.+.+++|.
T Consensus 128 ~pf~vGD~I~i-----~g~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~-~~~~r~~~~v~v~y~ 195 (286)
T 2vv5_A 128 RPFRAGEYVDL-----GGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSR-EPVRRNEFIIGVAYD 195 (286)
T ss_dssp CSSCTTCEEES-----SSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSS-SSEEEEEEEEEECTT
T ss_pred CCccCCCEEEE-----CCEEEEEEEEEeEEEEEEeCCCCEEEechHHHhhCceEECCC-CCcEEEEEEEEEcCC
Confidence 34799999997 378999988864 3344555554433222211111 112345556666664
No 163
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=30.42 E-value=31 Score=20.75 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (62)
T 2fpe_A 18 DELELEVDDPLLVELQA 34 (62)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcCcCCCCCEEEEEEec
Confidence 35668999999998643
No 164
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=30.14 E-value=42 Score=23.27 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=19.0
Q ss_pred eeeeCCEEEEEe-cCCCCeEeEEEEEEc
Q 032297 69 HVKAGDTVKVIA-GCDKGKIGEITKVFR 95 (143)
Q Consensus 69 ~IkkGD~V~VIs-G~dKGK~G~V~~V~~ 95 (143)
.|..||+|.|.. |...+..|.|.-|=.
T Consensus 7 ~~~VG~rV~V~~~~~~~~~~GtVryvG~ 34 (95)
T 1whl_A 7 GIDVGCPVKVQLRSGEEKFPGVVRFRGP 34 (95)
T ss_dssp CCCSSCEEEEECSSSSCEEEEEEEEECC
T ss_pred cCcCCCEEEEecCCCccceeEEEEEeCc
Confidence 478999999973 433467788776643
No 165
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=30.00 E-value=99 Score=20.65 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=27.4
Q ss_pred ceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 68 ~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
..++.||-|..-==+=.=-.|+|.+|+..+++.+|+
T Consensus 12 ~~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~ 47 (66)
T 2eqj_A 12 CKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFII 47 (66)
T ss_dssp CCSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred ccccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEE
Confidence 347899999777534344589999999988887775
No 166
>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} SCOP: b.34.4.2 PDB: 1pse_A 1psf_A
Probab=29.96 E-value=11 Score=25.83 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=27.0
Q ss_pred eeeCCEEEEEecC--CCCeEeEEEEEEccC--CEEEEe
Q 032297 70 VKAGDTVKVIAGC--DKGKIGEITKVFRHN--STVMVK 103 (143)
Q Consensus 70 IkkGD~V~VIsG~--dKGK~G~V~~V~~k~--n~ViVe 103 (143)
|++||.|.|++=. +-..+|+|..|+... +-|+|.
T Consensus 2 i~RGskVrIlR~ESYWyn~vGtVasVD~sgi~YPVvVR 39 (73)
T 1gxi_E 2 LNRGDKVRIKRTESYWYGDVGTVASVEKSGILYPVIVR 39 (73)
T ss_dssp CCTTCCEEECCSSSTTTTEEECBCCTTTCCSSSCEEEC
T ss_pred ccCCCEEEEccccceeecCcceEEEEcCCCCEeeEEEE
Confidence 6899999999986 778999999998853 345553
No 167
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=29.77 E-value=20 Score=22.06 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=12.1
Q ss_pred ccceeeeCCEEEEEe
Q 032297 66 HKMHVKAGDTVKVIA 80 (143)
Q Consensus 66 ~k~~IkkGD~V~VIs 80 (143)
..+.+++||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 1wi7_A 22 DELELKVGDIIEVVG 36 (68)
T ss_dssp TBCCBCTTCEECCCE
T ss_pred CCccCcCCCEEEEEE
Confidence 355689999999985
No 168
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=29.76 E-value=35 Score=20.43 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (65)
T 2oaw_A 16 REVTMKKGDILTLLNST 32 (65)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCCCCCCCCEEEEEEcC
Confidence 35568999999999854
No 169
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=29.71 E-value=27 Score=24.47 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 74 ~eLsf~~Gd~i~vl~~ 89 (119)
T 2rqr_A 74 PQLSLQIGDVVRIQET 89 (119)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CcccCcCCCEEEEEEc
Confidence 3566899999999874
No 170
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=29.71 E-value=35 Score=20.41 Aligned_cols=16 Identities=0% Similarity=0.106 Sum_probs=13.2
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (61)
T 1y0m_A 19 ELTFTKSAIIQNVEKQ 34 (61)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCcCCCEEEEEEec
Confidence 5668999999999864
No 171
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.68 E-value=22 Score=22.69 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (79)
T 1x6b_A 32 DEVTLQQADVVLVLQQ 47 (79)
T ss_dssp SBCCCCTTEEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3566899999999873
No 172
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}
Probab=29.33 E-value=24 Score=31.42 Aligned_cols=64 Identities=20% Similarity=0.137 Sum_probs=23.7
Q ss_pred hhccccccccccccCcccCCCCCCCccccCCCCceeeeeeeeeeeeeccCCCCCcccccceeeeCCEEEEEe
Q 032297 9 SSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIA 80 (143)
Q Consensus 9 ~~~~~l~~~~~~f~g~~l~~~~~~~~~~~~~~~~~~~~~~~k~Werk~~kpn~lp~~~k~~IkkGD~V~VIs 80 (143)
+++++||+.+.+|.++-+.... .......-.++.......|-... ..+| +-..|+.||+|.|=+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~lpa~~~tv~wg~fs---~~~~--PvltV~sGd~V~ieT 108 (484)
T 3b9t_A 45 ASAASLGISSSAFGQTMPKTGL---TSGHATHYYIPASDKTVSWGFFS---KSLK--PVVELESGDFATIET 108 (484)
T ss_dssp --------------------CC---SCEECCEEEECCSTTTEEESEEC---TTSC--CSEEECTTCEEEEEE
T ss_pred cccccccccchhhcccchhccc---CCCCCCceEccCCCCceEeCCcC---CCCC--ceEEECCCCEEEEEE
Confidence 5677888866665544332111 11112222344445556675542 3333 567899999999875
No 173
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=29.30 E-value=50 Score=25.73 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=26.8
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
-+.++.||.|.+..|.. =-.++|..+.+ .-.+.+.
T Consensus 26 VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~-~~~~~i~ 60 (228)
T 1v6z_A 26 VLRARVGDRFTVFDGER-EALAEVVDLGP-PLRYRVL 60 (228)
T ss_dssp TSCCCTTCEEEEECSSC-EEEEEEEECCS-SCEEEEE
T ss_pred hccCCCCCEEEEEeCCc-EEEEEEEECCC-eEEEEEE
Confidence 46789999999999987 66778888876 5555443
No 174
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=29.30 E-value=32 Score=21.30 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (71)
T 2fpf_A 21 DELELEVDDPLLVELQA 37 (71)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcccCcCCcEEEEeEec
Confidence 35668999999998644
No 175
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=29.20 E-value=50 Score=22.75 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=18.3
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEc
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFR 95 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~ 95 (143)
.|+.||+|.|..| ++.|.|.-|=+
T Consensus 5 ~i~vG~Rv~v~~~---~~~G~VryvG~ 28 (84)
T 4b6m_A 5 TIHVGDRCLCRPG---DRLGSVRFVGR 28 (84)
T ss_dssp CCCTTCEEEETTT---TEEEEEEEEEE
T ss_pred CcccCCEEEEcCC---CeEEEEEEEec
Confidence 4789999998544 57888888754
No 176
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=29.16 E-value=34 Score=20.92 Aligned_cols=16 Identities=6% Similarity=0.283 Sum_probs=13.3
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (67)
T 1gl5_A 18 DLRLERGQEYIILEKN 33 (67)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred eecCCcCCEEEEEEcc
Confidence 4568999999999864
No 177
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=29.02 E-value=36 Score=20.41 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.5
Q ss_pred ccceeeeCCEEEEEecCCC
Q 032297 66 HKMHVKAGDTVKVIAGCDK 84 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dK 84 (143)
..+.+++||.|.|+.-.+.
T Consensus 24 ~eLs~~~Gd~i~v~~~~~~ 42 (65)
T 3ulr_B 24 DEISFDPDDIITNIEMIDD 42 (65)
T ss_dssp TBCCBCTTCEEEEEECCSS
T ss_pred CEeeEecCCEEEEEEecCC
Confidence 3566899999999976543
No 178
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=28.76 E-value=35 Score=21.04 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.0
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 19 eLsf~~Gd~i~v~~~~ 34 (65)
T 1b07_A 19 DLPFKKGDILRIRDKP 34 (65)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred ccCCcCCCEEEEEEec
Confidence 4568999999999854
No 179
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=28.65 E-value=34 Score=20.27 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (58)
T 1zx6_A 17 GDLGLKPGDKVQLLEKL 33 (58)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCccCCCCCEEEEEEec
Confidence 35668999999998653
No 180
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=28.63 E-value=36 Score=21.01 Aligned_cols=18 Identities=6% Similarity=0.438 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 30 ~eLs~~~Gd~i~v~~~~~ 47 (73)
T 3h0h_A 30 DDLSFHKGEKFQILNSSE 47 (73)
T ss_dssp TBCCBCTTCEEEEEECSS
T ss_pred CcceEeCCCEEEEEEecC
Confidence 356689999999997543
No 181
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=28.53 E-value=34 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (65)
T 2j05_A 21 DEISFLKGDMFIVHNEL 37 (65)
T ss_dssp SBCCBCTTCEEEEEEEC
T ss_pred CcCcCCCCCEEEEeEec
Confidence 35668999999998753
No 182
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.00 E-value=38 Score=21.15 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (73)
T 2dm1_A 22 RELSLREGDVVRIYSRI 38 (73)
T ss_dssp TBCCBCTTCEEECCBSS
T ss_pred CcCCCCCCCEEEEEEec
Confidence 35568999999999753
No 183
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=27.94 E-value=37 Score=21.63 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=13.8
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 18 eLs~~~Gd~i~v~~~~~ 34 (80)
T 2pqh_A 18 EVTMKKGDILTLLNSTN 34 (80)
T ss_dssp BCCBCTTCEEEEEECCS
T ss_pred ccCCCCCCEEEEEEecC
Confidence 55689999999998644
No 184
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=27.90 E-value=37 Score=19.83 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 16 ~eLs~~~Gd~i~v~~~~~ 33 (58)
T 4e6r_A 16 DELSLVXGSRVTVMEXCS 33 (58)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CEeeEeCCCEEEEeEcCC
Confidence 346689999999987543
No 185
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.86 E-value=37 Score=20.78 Aligned_cols=17 Identities=6% Similarity=0.303 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2p_A 22 TQLSFLRGEKILILRQT 38 (68)
T ss_dssp TBCCCCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEcC
Confidence 34568999999999864
No 186
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=27.78 E-value=79 Score=20.19 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=18.9
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
.++.||+|.+ +|++++.+++++.+.
T Consensus 45 ~~~~Gd~V~v----------~V~~vd~~~~~i~ls 69 (80)
T 2k52_A 45 NLNVGDEIIV----------QAIDVRPEKREIDFK 69 (80)
T ss_dssp GCCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred eeCCCCEEEE----------EEEEEECCCCEEEEE
Confidence 4789999987 377888877776554
No 187
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=27.76 E-value=31 Score=27.54 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=20.9
Q ss_pred cceeeeCCEEEEEecC----------CCCeEeEE-EEE
Q 032297 67 KMHVKAGDTVKVIAGC----------DKGKIGEI-TKV 93 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~----------dKGK~G~V-~~V 93 (143)
.-.++.||+|.|..-. -+||+|+| ..+
T Consensus 120 ~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~ 157 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRT 157 (212)
T ss_dssp CCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEC
T ss_pred CcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEe
Confidence 4558999999997654 58999999 444
No 188
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=27.65 E-value=40 Score=20.52 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (68)
T 2dl3_A 22 KELPLQKGDIVYIYKQI 38 (68)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEeEec
Confidence 34568999999999753
No 189
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.61 E-value=54 Score=20.81 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (81)
T 1x43_A 32 TELSLLADEVITVFSV 47 (81)
T ss_dssp TBCCCCTTCEEEEECC
T ss_pred CcCCCCCCCEEEEEEc
Confidence 3566899999999975
No 190
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=27.61 E-value=33 Score=21.71 Aligned_cols=18 Identities=6% Similarity=0.298 Sum_probs=14.1
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 22 ~eLs~~~Gd~i~v~~~~~ 39 (80)
T 1ue9_A 22 EQLSLAPGQLILILKKNT 39 (80)
T ss_dssp TBCCCCTTCEEEEEEECS
T ss_pred CCCCCCCCCEEEEEEecC
Confidence 345689999999998643
No 191
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=27.22 E-value=42 Score=19.85 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (58)
T 1zlm_A 18 DELYFEEGDIIYITDMS 34 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEEEeC
Confidence 35668999999999753
No 192
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=27.14 E-value=36 Score=20.79 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=13.8
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLs~~~Gd~i~v~~~~~ 38 (69)
T 4esr_A 21 DELTIHRGDIIRVFFKDN 38 (69)
T ss_dssp TBCCBCTTCEEEEEEECS
T ss_pred CcCCCCCCCEEEEEEecC
Confidence 356689999999997543
No 193
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=26.85 E-value=39 Score=20.67 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=13.2
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.|.|+.-.+
T Consensus 23 eLs~~~Gd~i~v~~~~~ 39 (68)
T 2djq_A 23 DLKFNKGDVILLRRQLD 39 (68)
T ss_dssp CCCCCTTCEEEEEECCC
T ss_pred CccCCCCCEEEEEEecC
Confidence 45589999999987543
No 194
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=26.72 E-value=40 Score=21.66 Aligned_cols=17 Identities=6% Similarity=0.411 Sum_probs=13.5
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~vl~~~ 36 (79)
T 3cqt_A 20 DDLSFHKGEKFQILNSS 36 (79)
T ss_dssp TBCCBCTTCEEEEEECT
T ss_pred CcCCCCCCCEEEEEEec
Confidence 35568999999999754
No 195
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=26.65 E-value=43 Score=19.80 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=14.1
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLs~~~Gd~i~v~~~~~ 38 (62)
T 3ngp_A 21 RELTVKKGDILTLLNSTN 38 (62)
T ss_dssp TBCCBCTTCEEEEEECCS
T ss_pred CCccCCCCCEEEEeEecC
Confidence 355689999999998644
No 196
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=26.42 E-value=32 Score=26.91 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=23.7
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccC
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN 97 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~ 97 (143)
.-+.++.||.|.+ .|...--.++|..+.++.
T Consensus 25 ~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~ 55 (229)
T 2egv_A 25 RVRRIEKDEEFGV-IHEGKIYVCKVRREDKRE 55 (229)
T ss_dssp HHTTCCTTCCEEE-EETTEEEEEEEEEECSSE
T ss_pred HhhcCCCCCEEEE-eCCCCEEEEEEEEecCCE
Confidence 3466899999999 887666667888886654
No 197
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=26.38 E-value=39 Score=20.06 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=13.7
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLs~~~Gd~i~v~~~~~ 38 (64)
T 4f14_A 21 DEVSFRDGDYIVNVQPID 38 (64)
T ss_dssp TBCCBCTTCEEEEEEECS
T ss_pred CcCCCCCCCEEEEEEeCC
Confidence 346689999999987543
No 198
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=25.88 E-value=40 Score=20.27 Aligned_cols=15 Identities=7% Similarity=0.523 Sum_probs=12.6
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
.+.+++||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 17 ELTIRVGEIIRNVKK 31 (62)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCcCCCEEEEEEe
Confidence 456899999999985
No 199
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=25.28 E-value=96 Score=22.90 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=26.1
Q ss_pred ceeeeCCEEEEEecC--CCCeEeEEEEEEcc-CCEEEEe
Q 032297 68 MHVKAGDTVKVIAGC--DKGKIGEITKVFRH-NSTVMVK 103 (143)
Q Consensus 68 ~~IkkGD~V~VIsG~--dKGK~G~V~~V~~k-~n~ViVe 103 (143)
..++.||-|.|.... .+=-+|.|.++... ++...|.
T Consensus 25 ~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~ 63 (174)
T 1w4s_A 25 SMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLY 63 (174)
T ss_dssp -CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEE
T ss_pred EEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEE
Confidence 358999999998875 34569999999985 3444433
No 200
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.17 E-value=45 Score=20.48 Aligned_cols=16 Identities=13% Similarity=0.569 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 2dl4_A 22 EDLEMRPGDIITLLED 37 (68)
T ss_dssp TBCCCCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3566899999999984
No 201
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=25.03 E-value=44 Score=20.84 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 14 ~eLs~~~Gd~i~v~~~~~ 31 (73)
T 2kxd_A 14 REVTMKKGDILTLLNSTN 31 (73)
T ss_dssp CCCCBCTTCEEEEEECCS
T ss_pred CEeeEcCCCEEEEEEecC
Confidence 345589999999998643
No 202
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}
Probab=24.94 E-value=68 Score=20.68 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (90)
T 3reb_B 18 DDLSFQKGDQMVVLEE 33 (90)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEe
Confidence 3566899999999975
No 203
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=24.60 E-value=46 Score=20.24 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=13.8
Q ss_pred cceeeeCCEEEEEecCCC
Q 032297 67 KMHVKAGDTVKVIAGCDK 84 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dK 84 (143)
.+.+++||.|.|+.-.+.
T Consensus 5 eLs~~~Gd~i~v~~~~~~ 22 (63)
T 1tuc_A 5 EVTMKKGDILTLLNSTNK 22 (63)
T ss_dssp CCCBCTTCEEEEEECCSS
T ss_pred ccCCCCCCEEEEEEecCC
Confidence 445899999999986543
No 204
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.47 E-value=1.4e+02 Score=19.15 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=13.9
Q ss_pred cceeeeCCEEEEEecCCC
Q 032297 67 KMHVKAGDTVKVIAGCDK 84 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dK 84 (143)
.+.+++||.|.|+.-.+.
T Consensus 34 eLsf~~Gd~i~v~~~~~~ 51 (88)
T 2dbk_A 34 ALALEVGDIVKVTRMNIN 51 (88)
T ss_dssp BCCBCTTCEEEEEEECTT
T ss_pred cccCCCCCEEEEEEecCC
Confidence 456899999999976443
No 205
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.06 E-value=16 Score=30.55 Aligned_cols=24 Identities=42% Similarity=0.401 Sum_probs=0.0
Q ss_pred hhhhhhhccccccccccccCcccC
Q 032297 4 MAALQSSMTSLSISSNSFFGQRLS 27 (143)
Q Consensus 4 ~~~~~~~~~~l~~~~~~f~g~~l~ 27 (143)
||+-.++..+||++|+|.|...-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (293)
T 3bbo_G 1 MATSTSSSLSLSFFSSSLFSSKSR 24 (293)
T ss_dssp ------------------------
T ss_pred CCccccCcceeeeeeccccccCcc
Confidence 445566778888888777765543
No 206
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=23.91 E-value=1.2e+02 Score=20.34 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=19.4
Q ss_pred eeeCCEEEE----EecCCCCeEeEEEEEEccCCEEEEece
Q 032297 70 VKAGDTVKV----IAGCDKGKIGEITKVFRHNSTVMVKDI 105 (143)
Q Consensus 70 IkkGD~V~V----IsG~dKGK~G~V~~V~~k~n~ViVegv 105 (143)
+++||++.+ +.=+.++..+.+.-....+++++.++.
T Consensus 73 v~~Gd~l~~~a~v~~~~~~~~~~~v~~~~~~~g~~v~~g~ 112 (121)
T 2f41_A 73 VKQGERVVAKAKVTAVEKEKGRTVVEVNSYVGEEIVFSGR 112 (121)
T ss_dssp CBTTCEEEEEEEEEEECSSSSCEEEEEEEEETTEEEEEEE
T ss_pred cCCCCEEEEEEEEEEEEccCCEEEEEEEEEECCEEEEEEE
Confidence 688997754 422334455555444444556655553
No 207
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=23.83 E-value=35 Score=22.31 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=14.0
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 34 ~eLsf~~GDiI~V~~~~~ 51 (83)
T 2ke9_A 34 TALNVRAGDVITVLEQHP 51 (83)
T ss_dssp TBCCBCTTCEEEESCSSC
T ss_pred CcccccCCCEEEEEEecC
Confidence 355689999999997654
No 208
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=23.69 E-value=75 Score=19.06 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=21.5
Q ss_pred eeeCCEEEEEe-cCCCCeEeEEEEEEccCCEEEEe
Q 032297 70 VKAGDTVKVIA-GCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 70 IkkGD~V~VIs-G~dKGK~G~V~~V~~k~n~ViVe 103 (143)
.++||.|...- .+.+=-.++|++|...++.+.|.
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~ 36 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 36 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEE
Confidence 47899998885 33334568888887766555443
No 209
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=23.69 E-value=53 Score=20.07 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=13.6
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 18 DELSFRKGDIMTVLEQD 34 (69)
T ss_dssp TBCCBCTTCEEEEEETT
T ss_pred CccCCcCCCEEEEeECC
Confidence 35568999999999864
No 210
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.11 E-value=97 Score=20.53 Aligned_cols=40 Identities=20% Similarity=0.082 Sum_probs=26.1
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEcc-CCEEEEeceeee
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRH-NSTVMVKDINLK 108 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k-~n~ViVegvN~~ 108 (143)
.+++||.|.-.--+.+=-.++|.+|... ...|...|-|..
T Consensus 9 ~~kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dyn~e 49 (74)
T 2equ_A 9 DFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIR 49 (74)
T ss_dssp CCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEE
T ss_pred CCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEecCCeE
Confidence 4688999998865333368899999764 334544454533
No 211
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=23.11 E-value=48 Score=20.15 Aligned_cols=16 Identities=13% Similarity=0.439 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (67)
T 2o9s_A 21 VEMSFRKGERITLLRQ 36 (67)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CccCCCCCCEEEEEEe
Confidence 3556899999999974
No 212
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.91 E-value=38 Score=20.69 Aligned_cols=16 Identities=31% Similarity=0.835 Sum_probs=13.0
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (70)
T 2ct3_A 23 ELELREGDRVDVMQQC 38 (70)
T ss_dssp BCCBCTTEEEEEEEEC
T ss_pred CccCCCCCEEEEEEEC
Confidence 5568999999998753
No 213
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=22.79 E-value=59 Score=22.04 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=18.7
Q ss_pred cceeeeCCEEEEEecCCCCeEeEEE
Q 032297 67 KMHVKAGDTVKVIAGCDKGKIGEIT 91 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKGK~G~V~ 91 (143)
+..|.+||+|.|---++--..|.|+
T Consensus 51 ~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 51 YIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp TCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred CccCCCCCEEEEEECccCCCcEEEE
Confidence 4458999999997666656667774
No 214
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1
Probab=22.79 E-value=54 Score=20.12 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=14.1
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 20 ~eLs~~~Gd~i~v~~~~~ 37 (73)
T 3thk_A 20 REVTMKKGDILTLLNSTN 37 (73)
T ss_dssp TBCCBCTTCEEEEEECCS
T ss_pred CccCCCCCCEEEEEECCC
Confidence 356689999999998644
No 215
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.51 E-value=49 Score=21.64 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=13.1
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 31 ~eLs~~~Gd~i~v~~~ 46 (94)
T 2e5k_A 31 DELELVPGDFIFMSPM 46 (94)
T ss_dssp SBCCBCTTCEEEECGG
T ss_pred CCcCCCCCCEEEEEEC
Confidence 3566899999999975
No 216
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=22.49 E-value=88 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.8
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEcc
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRH 96 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k 96 (143)
..=.|++||.|.++-+ |+.++|.+|..+
T Consensus 294 ~~G~l~~gd~v~~~p~---~~~~~V~~i~~~ 321 (467)
T 1r5b_A 294 EAGSIKKNSNVLVMPI---NQTLEVTAIYDE 321 (467)
T ss_dssp CBSEEETTEEEEEETT---TEEEEEEEEECT
T ss_pred eeeEEeeCCEEEEccC---CeeEEEEEEecc
Confidence 4457899999999865 578899999876
No 217
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=22.40 E-value=98 Score=20.91 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=19.2
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
.++.||+|.|. |++|+.++.++.+.
T Consensus 75 ~~~vGd~V~v~----------V~~vd~~~~ki~LS 99 (109)
T 2khj_A 75 VLSVGDEVEAK----------FTGVDRKNRAISLS 99 (109)
T ss_dssp SCCTTCEEEEE----------EEEEETTTTEEEEE
T ss_pred ccCCCCEEEEE----------EEEEECCCCEEEEE
Confidence 48899999864 88888877676553
No 218
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.18 E-value=42 Score=20.87 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=13.2
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (77)
T 2d8j_A 23 DLSFRAGDKLQVLDTS 38 (77)
T ss_dssp BCCBCTTCCEEEEECC
T ss_pred ccCCCCCCEEEEEECC
Confidence 5668999999999864
No 219
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.12 E-value=52 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 32 ~eLsf~~Gd~i~v~~~~~ 49 (78)
T 2ed0_A 32 DELSFQEGAIIYVIKKND 49 (78)
T ss_dssp TBCCBCSSCEEEEEEECS
T ss_pred CcccccCCCEEEEEEeCC
Confidence 356689999999997543
No 220
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=22.01 E-value=34 Score=20.42 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=12.9
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (65)
T 3u23_A 22 DELELKVGDIIDINEE 37 (65)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3566899999999864
No 221
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=21.99 E-value=52 Score=20.11 Aligned_cols=16 Identities=6% Similarity=0.175 Sum_probs=12.8
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 22 ~eLsf~~Gd~i~v~~~ 37 (68)
T 1tg0_A 22 DDLNFEKDQEIIVTSV 37 (68)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCCCCCCCCEEEEEEe
Confidence 3556899999999974
No 222
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=21.93 E-value=55 Score=19.99 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=12.9
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 24 eLs~~~Gd~i~v~~~~ 39 (69)
T 2dil_A 24 ELDLSAGDILEVILEG 39 (69)
T ss_dssp SCCBCTTCEEEEEECC
T ss_pred ccCCCCCCEEEEEECC
Confidence 4568999999999753
No 223
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=21.88 E-value=44 Score=21.60 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=10.9
Q ss_pred cceeeeCCEEEEEec
Q 032297 67 KMHVKAGDTVKVIAG 81 (143)
Q Consensus 67 k~~IkkGD~V~VIsG 81 (143)
+..+.+||.|.|-.=
T Consensus 44 ~i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 44 YIRILPGDRVVVEIT 58 (71)
T ss_dssp CCCCCTTCEEEEECC
T ss_pred CcCCCCCCEEEEEEE
Confidence 344679999998644
No 224
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=21.78 E-value=92 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=24.3
Q ss_pred ceeeeCCEEEEEecCCCC-eEeEEEEEEccCCEEEE
Q 032297 68 MHVKAGDTVKVIAGCDKG-KIGEITKVFRHNSTVMV 102 (143)
Q Consensus 68 ~~IkkGD~V~VIsG~dKG-K~G~V~~V~~k~n~ViV 102 (143)
-+..-||+|.|--=+.+| .+|+|.+|....+.-+|
T Consensus 52 ~~a~~GD~V~v~i~~~~~~~eg~v~~iler~~~~~v 87 (644)
T 2id0_A 52 KKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFV 87 (644)
T ss_dssp TTSCTTCEEEEEEECCSSSCEEEEEEEEECSCSEEE
T ss_pred hcCCCCCEEEEEEecCCCCeEEEEEEEEecCCCEEE
Confidence 345779999985433333 68999999887765544
No 225
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=21.70 E-value=1.6e+02 Score=19.38 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=20.4
Q ss_pred eeeeeeeeeeeeeccCCCCCcccccceeeeCCEEEEE
Q 032297 43 CLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVI 79 (143)
Q Consensus 43 ~~~~~~~k~Werk~~kpn~lp~~~k~~IkkGD~V~VI 79 (143)
+..+.++-.++... .|+.-+ -..+.+++||.|.|+
T Consensus 17 ~~~~~Alydy~~~~-~~~~~~-~~eLsf~~Gd~i~v~ 51 (96)
T 1wie_A 17 VHLCVARYSYNPFD-GPNENP-EAELPLTAGKYLYVY 51 (96)
T ss_dssp EEEEEESSCCCGGG-SSCSCT-TTBCCCCTTCEEEEE
T ss_pred CcEEEECCccCCCc-ccCCCC-CCeeeECCCCEEEEe
Confidence 44455555554433 222111 246678999999999
No 226
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.60 E-value=46 Score=20.44 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=13.3
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 23 ~eLs~~~Gd~i~v~~~~ 39 (71)
T 2dnu_A 23 DEIGFEKGVTVEVIRKN 39 (71)
T ss_dssp TBCCBCTTCEEEECCCC
T ss_pred CCCcCCCCCEEEEeECC
Confidence 35568999999998753
No 227
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}
Probab=21.33 E-value=67 Score=20.78 Aligned_cols=16 Identities=6% Similarity=0.358 Sum_probs=13.0
Q ss_pred ccceeeeCCEEEEEec
Q 032297 66 HKMHVKAGDTVKVIAG 81 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG 81 (143)
..+.+++||.|.|+.-
T Consensus 46 ~eLs~~~Gd~i~v~~~ 61 (86)
T 2jxb_A 46 QELDIKKNERLWLLDD 61 (86)
T ss_dssp SBCCCCTTEEEEEEEC
T ss_pred CEeccCCCCEEEEEec
Confidence 3566899999999974
No 228
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=21.27 E-value=81 Score=27.52 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=23.2
Q ss_pred cceeeeCCEEEEEecCCCC---eEeEEEEEEccC
Q 032297 67 KMHVKAGDTVKVIAGCDKG---KIGEITKVFRHN 97 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~dKG---K~G~V~~V~~k~ 97 (143)
.-+|+.||.|.|-.....+ -.|.|.+|....
T Consensus 78 ~~~~~~Gd~v~~~~~~~~~~~~~~g~v~~~~~~~ 111 (646)
T 4b3f_X 78 SNSFTSGDIVGLYDAANEGSQLATGILTRVTQKS 111 (646)
T ss_dssp CCCCCTTCEEEEEETTTTSCCCEEEEEEEEETTE
T ss_pred cCCCCCCCEEEEEecCCCCCceEEEEEEEEeCCE
Confidence 3468999999998765443 479999997653
No 229
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.27 E-value=60 Score=20.43 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=13.2
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (79)
T 2yun_A 22 DELNLEKGDIVIIHEKK 38 (79)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEcC
Confidence 34568999999998753
No 230
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=21.20 E-value=1.5e+02 Score=18.44 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=27.5
Q ss_pred ccccCcccCCCCCCCccccCCCCceeeeeeeeeeeeeccCCCCCcccccceeeeCCEEEEEecC
Q 032297 19 NSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 19 ~~f~g~~l~~~~~~~~~~~~~~~~~~~~~~~k~Werk~~kpn~lp~~~k~~IkkGD~V~VIsG~ 82 (143)
+.+.|++|.-.... ..| .+.+.+|-.+.- -|. ....+..||++.|+.-+
T Consensus 25 s~~~Gk~l~el~~~--------~~~-~i~~I~R~~~~~-~p~-----~~~~l~~GD~l~v~g~~ 73 (86)
T 3jxo_A 25 SPVVGKKLKDLPLP--------RDS-IIAAIVRGGVLV-VPR-----GDTEILSGDKLYVIVSA 73 (86)
T ss_dssp CTTTTCBGGGSCCC--------SSE-EEEEEEETTEEE-CCC-----TTCBCCTTCEEEEEEET
T ss_pred CccccCCHHHCCCC--------CCC-EEEEEEECCEEE-CCC-----CCCEECCCCEEEEEECH
Confidence 56778877643211 123 345555543221 122 46679999999887543
No 231
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=21.11 E-value=63 Score=19.40 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=13.4
Q ss_pred cceeeeCCEEEEEecCC
Q 032297 67 KMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~d 83 (143)
.+.+++||.+.|+.=.+
T Consensus 37 eLsf~~Gd~i~v~~~~~ 53 (62)
T 1g2b_A 37 EVTMKKGDILTLLNSTN 53 (62)
T ss_dssp BCCBCTTCEEEEEECCS
T ss_pred ccCCCCCCEEEEEEecC
Confidence 45689999999997543
No 232
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.04 E-value=47 Score=20.30 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=13.1
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (71)
T 2cre_A 23 ELAFSRGDILTILEQH 38 (71)
T ss_dssp BCCCCSSCCEEEEESC
T ss_pred CCCCCCCCEEEEeEcC
Confidence 4568999999999864
No 233
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=21.04 E-value=88 Score=20.65 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=33.6
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEcc-CCEEEEec---eeeeeeeecCCcc
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRH-NSTVMVKD---INLKTKHVKKREE 117 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k-~n~ViVeg---vN~~kkhvKp~~~ 117 (143)
.++.||+|..-=|+-+=-.++|++|..+ ...|...| -+++-.|+||.+.
T Consensus 6 ~~~vGd~vmArW~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 6 EFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 58 (67)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred ccccCCEEEEEcCCCCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHcccCCc
Confidence 3588999999986666678999999886 35566665 2244456666544
No 234
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.01 E-value=48 Score=20.36 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=11.9
Q ss_pred cceeeeCCEEEEEe
Q 032297 67 KMHVKAGDTVKVIA 80 (143)
Q Consensus 67 k~~IkkGD~V~VIs 80 (143)
.+.+++||.|.|+.
T Consensus 23 eLs~~~Gd~i~v~~ 36 (68)
T 1wxb_A 23 ELSVLKDEVLEVLE 36 (68)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 45589999999996
No 235
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.01 E-value=55 Score=21.16 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=13.1
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 33 eLsf~~Gd~i~v~~~~ 48 (88)
T 1x2q_A 33 ELTFKHGEIIIVLDDS 48 (88)
T ss_dssp CCCCCSSCEEEEEECS
T ss_pred ccCCCCCCEEEEEEeC
Confidence 4568999999999843
No 236
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=20.72 E-value=37 Score=21.14 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=13.9
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 22 ~eLs~~~Gd~i~v~~~~~ 39 (73)
T 2dbm_A 22 GELGFKEGDIITLTNQID 39 (73)
T ss_dssp TCCCBCTTCEEECCBCSS
T ss_pred CCccCCCCCEEEEEEecC
Confidence 355689999999988543
No 237
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=20.62 E-value=98 Score=22.63 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=8.3
Q ss_pred eeeeCCEEEE
Q 032297 69 HVKAGDTVKV 78 (143)
Q Consensus 69 ~IkkGD~V~V 78 (143)
+++.||++.+
T Consensus 115 PV~~GDtl~~ 124 (159)
T 3k67_A 115 PVRIGDVVRV 124 (159)
T ss_dssp CCCTTCEEEE
T ss_pred CcCCCCEEEE
Confidence 4789999986
No 238
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Probab=20.60 E-value=35 Score=20.83 Aligned_cols=16 Identities=13% Similarity=0.430 Sum_probs=12.7
Q ss_pred cceeeeCCEEEEEecC
Q 032297 67 KMHVKAGDTVKVIAGC 82 (143)
Q Consensus 67 k~~IkkGD~V~VIsG~ 82 (143)
.+.+++||.|.|+.-.
T Consensus 24 eLs~~~Gd~i~v~~~~ 39 (67)
T 1aww_A 24 DLQLRKGDEYFILEES 39 (67)
T ss_dssp SCCCCSSCEEECCCCC
T ss_pred CccCCCCCEEEEEEcc
Confidence 4558999999998743
No 239
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...
Probab=20.44 E-value=62 Score=20.95 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=14.3
Q ss_pred ccceeeeCCEEEEEecCC
Q 032297 66 HKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~d 83 (143)
..+.+++||.|.|+.-.+
T Consensus 21 ~eLsf~~Gd~i~vl~~~~ 38 (84)
T 4ag1_C 21 TDLSFHKGEKFQILEFGP 38 (84)
T ss_dssp TBCCBCTTCEEEEEECCS
T ss_pred CcccccCCCEEEEEEecC
Confidence 356689999999998553
No 240
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=20.35 E-value=1.1e+02 Score=20.91 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=19.9
Q ss_pred eeeeCCEEEEEecCCCCeEeEEEEEEccCCEEEEe
Q 032297 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103 (143)
Q Consensus 69 ~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ViVe 103 (143)
.++.||+|.| +|++|+.+++++.+.
T Consensus 75 ~~~vGd~V~v----------kV~~vd~~~~rI~ls 99 (115)
T 2khi_A 75 VVNVGDVVEV----------MVLDIDEERRRISLG 99 (115)
T ss_dssp TCCTTCEEEE----------EEEEEETTTTEEEEC
T ss_pred EECCCCEEEE----------EEEEEECCCCEEEEE
Confidence 4799999988 488899887777653
No 241
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.24 E-value=1.9e+02 Score=19.62 Aligned_cols=34 Identities=21% Similarity=0.084 Sum_probs=24.6
Q ss_pred eeeeCCEEEEEec-CCCCeEeEEEEEEccCCEEEE
Q 032297 69 HVKAGDTVKVIAG-CDKGKIGEITKVFRHNSTVMV 102 (143)
Q Consensus 69 ~IkkGD~V~VIsG-~dKGK~G~V~~V~~k~n~ViV 102 (143)
.+++||.|...-- +.+=-.++|.+|....+.+.|
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V 44 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVV 44 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEE
Confidence 4588999999863 444468999999875555544
No 242
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.19 E-value=48 Score=20.86 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=13.4
Q ss_pred ccceeeeCCEEEEEecC
Q 032297 66 HKMHVKAGDTVKVIAGC 82 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~ 82 (143)
..+.+++||.|.|+.-.
T Consensus 24 ~eLs~~~Gd~i~vl~~~ 40 (75)
T 2egc_A 24 ETAGFQEGVSMEVLERN 40 (75)
T ss_dssp SSCCBCTTCEEEECEEC
T ss_pred CcCCCCCCCEEEEEEcC
Confidence 35568999999999754
No 243
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=20.19 E-value=1.2e+02 Score=25.35 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=30.1
Q ss_pred cceeeeCCEEEEE----ecCCCCeEeEEEEEEccCCEEEEece
Q 032297 67 KMHVKAGDTVKVI----AGCDKGKIGEITKVFRHNSTVMVKDI 105 (143)
Q Consensus 67 k~~IkkGD~V~VI----sG~dKGK~G~V~~V~~k~n~ViVegv 105 (143)
...+++||.|-.. .+..-=-.++|++++.++++-.|+|+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~~y~v~d~ 427 (522)
T 3mp6_A 385 NAPILVGSEVAYKPRRGSADGEWIQCEVLKVVADGTRFEVRDP 427 (522)
T ss_dssp CCCBCTTCEEEECCC-----CCEEEEEEEEEETTTTEEEEEEC
T ss_pred ccccCCCCEEEEecCCCCCCCCEEEEEEEEEeCCCCEEEEeCC
Confidence 4458999999886 34455667899999999999999877
No 244
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.18 E-value=34 Score=21.87 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=12.0
Q ss_pred cceeeeCCEEEEEe
Q 032297 67 KMHVKAGDTVKVIA 80 (143)
Q Consensus 67 k~~IkkGD~V~VIs 80 (143)
.+.+++||.+.|+.
T Consensus 33 eLs~~~Gd~i~v~~ 46 (79)
T 2cud_A 33 PPIFRRGEKLRVIS 46 (79)
T ss_dssp CCSSCTTCEEEEEE
T ss_pred cCCCCCCCEEEEEe
Confidence 45689999999997
No 245
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=20.15 E-value=73 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=23.6
Q ss_pred ccceeeeCCEEEEEecCCCCeEeEEEEEEccCCE
Q 032297 66 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNST 99 (143)
Q Consensus 66 ~k~~IkkGD~V~VIsG~dKGK~G~V~~V~~k~n~ 99 (143)
..=.|++||.|.+..+ |+..+|.+|...+..
T Consensus 266 ~~G~l~~gd~v~~~p~---~~~~~V~~i~~~~~~ 296 (434)
T 1zun_B 266 ASGIVHKGDEIVVLPS---GKSSRVKSIVTFEGE 296 (434)
T ss_dssp CBSCEETTCEEEETTT---CCEEEEEEEEETTEE
T ss_pred ecceEeCCCEEEEecC---CeEEEEEEEEEcCcc
Confidence 4557899999999764 478889888876543
No 246
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=20.05 E-value=46 Score=20.22 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=14.9
Q ss_pred cccceeeeCCEEEEEecCC
Q 032297 65 LHKMHVKAGDTVKVIAGCD 83 (143)
Q Consensus 65 ~~k~~IkkGD~V~VIsG~d 83 (143)
+.++.|..||.|.+..-.+
T Consensus 21 r~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 21 RQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHSCCCTTCEEEEEECSS
T ss_pred HHHcCcCCCCEEEEEEECC
Confidence 4567899999999887543
Done!