RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032297
(143 letters)
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 66.7 bits (163), Expect = 5e-16
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 125
KMHVK GDTV V +G KG++G++ +V V+V+ +N+ K V+ + QG I+
Sbjct: 3 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIE 61
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 110
Score = 64.0 bits (156), Expect = 6e-15
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKL 126
K+H K GDTV V++G KG+ G++ + V+V+ +N+ TK+VK QG +
Sbjct: 10 KLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQR 69
Query: 127 KC 128
+
Sbjct: 70 EL 71
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 61.6 bits (150), Expect = 7e-14
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 44 LIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 103
+ L R+E + + V AGDTV+V+ G G+ GE+ V + + V+
Sbjct: 22 QVRATLSADLREEYGQRN------VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 75
Query: 104 DINLKTKHVKKRE---EEEQGQIIKLKCD 129
D+ L+ ++ + ++ L +
Sbjct: 76 DVTLEKTDGEEVPRPLDTSNVRVTDLDLE 104
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 55.1 bits (133), Expect = 1e-11
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 70 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKR-EEEEQGQIIK 125
++ D V V+ G DKGK G++ V V+V+ INL KH K + G I++
Sbjct: 2 IRRDDEVIVLTGKDKGKRGKVKNVLSSG-KVIVEGINLVKKHQKPVPALNQPGGIVE 57
>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 213
Score = 30.9 bits (70), Expect = 0.037
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 61 SLPVLHKMHVKAGDTVK--VIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEE 118
+ HV AG + GCD G++ ++ M + + ++ K R
Sbjct: 98 PMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLP 157
Query: 119 EQGQII---KLKCDALLK 133
Q + ++ +AL
Sbjct: 158 MQMVKVQSNRVHVNALSS 175
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
NusG, C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 58
Score = 28.8 bits (65), Expect = 0.045
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102
K+ + GD V+VI G G + +V + V
Sbjct: 2 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV 37
>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol
dehydrogenase) {Silverleaf whitefly (Bemisia
argentifolii) [TaxId: 77855]}
Length = 178
Score = 30.3 bits (67), Expect = 0.059
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 65 LHKMHVKAGDTVKVIAGC 82
KA +T+KV+ C
Sbjct: 159 FEAARKKADNTIKVMISC 176
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 58
Score = 27.6 bits (62), Expect = 0.12
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 67 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102
++ + GD V+V++G G +T++ V V
Sbjct: 2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV 37
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 27.7 bits (62), Expect = 0.14
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 69 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM 101
+ K GD VKVIAG +G G I +V + +
Sbjct: 10 YFKMGDHVKVIAGRFEGDTGLIVRVEENFVILF 42
>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 26.5 bits (57), Expect = 0.94
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 63 PVLHKMHVKAGDTVKVIAGCDK-GKIGEITKVFRHNSTVMVKDINLKTKHVKK 114
++ ++ G V + KV + + V K K+
Sbjct: 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 71
>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 25.5 bits (56), Expect = 1.5
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 39 TDKPCLIVVRL-KRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN 97
TD P + L W + P + V+ V G V V+AG D+ E+ R+
Sbjct: 16 TDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAEL----RNA 71
Query: 98 STVM 101
+ M
Sbjct: 72 TAAM 75
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 25.8 bits (56), Expect = 2.1
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 72 AGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 124
D V AG G + NS ++ V ++ + G I
Sbjct: 182 LTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQI 234
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.0 bits (54), Expect = 4.0
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 14/50 (28%)
Query: 90 ITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKLKCDALLKRNGSSK 139
++KVF+ V + ++N+ E G+ +L +G+ K
Sbjct: 9 VSKVFKKGKVVALDNVNINI---------ENGERF-----GILGPSGAGK 44
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus
influenzae [TaxId: 727]}
Length = 72
Score = 23.6 bits (51), Expect = 4.0
Identities = 4/35 (11%), Positives = 16/35 (45%)
Query: 68 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 102
+ + G+ +++ G + +I + + + V +
Sbjct: 31 LRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEI 65
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus
caballus) [TaxId: 9796]}
Length = 176
Score = 24.6 bits (52), Expect = 4.4
Identities = 11/79 (13%), Positives = 20/79 (25%)
Query: 64 VLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
+ V G T V G + + ++ DIN K +
Sbjct: 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 79
Query: 124 IKLKCDALLKRNGSSKPGG 142
+ + + GG
Sbjct: 80 PQDYKKPIQEVLTEMSNGG 98
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 24.3 bits (53), Expect = 5.3
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 19/73 (26%)
Query: 66 HKMHVKAGDTVK---VIAGCDKGKIGEITKVFRHNSTVMV--------KDINLKTKHVKK 114
K + G VK + D + E K ++ V K++ + V
Sbjct: 85 FKRIAEEGQRVKVGDTVIEFDLPLLEEKAK----STLTPVVISNMDEIKELIKLSGSVTV 140
Query: 115 REEEEQGQIIKLK 127
E +I++K
Sbjct: 141 GETP----VIRIK 149
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin
{Nitrosomonas europaea [TaxId: 915]}
Length = 112
Score = 23.9 bits (51), Expect = 6.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 60 NSLPVLHKMHVKAGDTVKVI 79
N L + VK GD VKV+
Sbjct: 32 NVLNEPETLVVKKGDAVKVV 51
>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse
(Mus musculus), class II [TaxId: 10090]}
Length = 202
Score = 24.5 bits (52), Expect = 6.2
Identities = 3/18 (16%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 63 PVLHKMH-VKAGDTVKVI 79
+ + +K G +++ I
Sbjct: 182 SINDAIDLMKEGKSIRTI 199
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 23.6 bits (51), Expect = 6.5
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 64 VLHKMHVKAGDTVKV 78
V+ K++ D V
Sbjct: 57 VIKKLYYNLDDIAYV 71
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 23.2 bits (50), Expect = 6.6
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 64 VLHKMHVKAGDTVKV 78
+ ++ V G V
Sbjct: 54 KVLEILVPEGTVATV 68
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 23.2 bits (50), Expect = 7.1
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 64 VLHKMHVKAGDTVKV 78
+L + G TV
Sbjct: 55 ILDAVLEDEGTTVTS 69
>d1rh6a_ a.6.1.7 (A:) Excisionase Xis {Bacteriophage lambda
[TaxId: 10710]}
Length = 55
Score = 22.5 bits (48), Expect = 9.4
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 47 VRLKRWERKECKPNSLPVLHKMHVKAG 73
+ L+ W ++ +P SL + + V+
Sbjct: 3 LTLQEWNARQRRPRSLETVRR-WVRES 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,521
Number of extensions: 21981
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 35
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)