BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032302
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K2Y7|RM47_MOUSE 39S ribosomal protein L47, mitochondrial OS=Mus musculus GN=Mrpl47
PE=2 SV=2
Length = 252
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 58/86 (67%)
Query: 38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
LEEFF++ + ++K G SW +LR KS +DL+KLWYVLLKE+NML+T +Q Q
Sbjct: 66 LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125
Query: 98 LKFPNPERIPKVRKSMCRIKQVLTER 123
L P+PER+ KV SM + +V+ ER
Sbjct: 126 LPMPSPERLEKVVDSMDNVDKVVQER 151
>sp|Q08DT6|RM47_BOVIN 39S ribosomal protein L47, mitochondrial OS=Bos taurus GN=MRPL47
PE=2 SV=1
Length = 252
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 58/86 (67%)
Query: 38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
LEEFF++ + ++K G SW +LR KS +DL+KLWYVLLKE+NML+T +Q Q
Sbjct: 66 LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125
Query: 98 LKFPNPERIPKVRKSMCRIKQVLTER 123
L P+PER+ KV SM + +V+ ER
Sbjct: 126 LPMPSPERLEKVVDSMDALDKVVQER 151
>sp|Q9HD33|RM47_HUMAN 39S ribosomal protein L47, mitochondrial OS=Homo sapiens GN=MRPL47
PE=1 SV=2
Length = 250
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 57/86 (66%)
Query: 38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
LEEFF++ + +K G +W +LR KS +DL+KLWYVLLKE+NML+T +Q Q
Sbjct: 64 LEEFFDDPKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 123
Query: 98 LKFPNPERIPKVRKSMCRIKQVLTER 123
L P+PER+ KV SM + +V+ ER
Sbjct: 124 LPMPSPERLDKVVDSMDALDKVVQER 149
>sp|P87232|RM04_SCHPO 54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl4 PE=3 SV=1
Length = 144
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 32 TSRHNPLEEFFENDRG--PDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQ 89
S +PL FF + + P ++ +GR+W A ELR KS++DL+ LWY L+EKN+L TQ
Sbjct: 32 VSDTHPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQ 91
Query: 90 QQMLHAQNLKFPNP--ERIPKVRKSMCRIKQVLTER 123
+ + L P ER+ V K+M IK VL ER
Sbjct: 92 RAEMKRLQLTIPKASNERVLAVNKTMAAIKFVLWER 127
>sp|Q2H080|RM04_CHAGB 54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=MRPL4 PE=3 SV=1
Length = 272
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 38 LEEFFEN-----DRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQM 92
L EFF+N + P+ K +GRSW A ELR KSWDDL++LW+V KE+N + T
Sbjct: 99 LWEFFQNRTMVVNSPPEIAK--HGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWE 156
Query: 93 LHAQNLKFPNP---ERIPKVRKSMCRIKQVLTER 123
+ L F ER VR++M IK VLTER
Sbjct: 157 RNKSGLGFGEAEMRERDNAVRQTMRSIKHVLTER 190
>sp|Q7S910|RM04_NEUCR 54S ribosomal protein L4, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=mrpl-4 PE=3 SV=2
Length = 263
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 55 YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFP---NPERIPKVRK 111
+GR+W SELR KSWDDL++LW+V +KE+N + T L F ER V++
Sbjct: 122 HGRAWTVSELRKKSWDDLHRLWWVCVKERNRIATANWERTKSELGFGLAEANERDRNVKQ 181
Query: 112 SMCRIKQVLTER 123
+M IK VLTER
Sbjct: 182 TMRGIKHVLTER 193
>sp|A6RDX3|RM04_AJECN 54S ribosomal protein L4, mitochondrial OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=MRPL4 PE=3 SV=1
Length = 248
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 41 FFENDRGP---DDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMT---QQQMLH 94
FF DR P +++ +GR+W ELR KSWDDL+KL+++ +KE+N + T ++Q L
Sbjct: 105 FFGPDRKPIPTPEEEYAHGRAWSIQELRQKSWDDLHKLYWLCVKERNRIATARYERQRLQ 164
Query: 95 AQNLKFPNPERIPKVRKSMCRIKQVLTER 123
A + + R VR + IKQVL ER
Sbjct: 165 AGYGDYESNNRDKTVRGTQQSIKQVLRER 193
>sp|A2QCC7|RM04_ASPNC 54S ribosomal protein L4, mitochondrial OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=mrpl4 PE=3 SV=1
Length = 273
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 31 ATSRHNPLEEFFENDRGPDDQKPVY----GRSWKASELRLKSWDDLNKLWYVLLKEKNML 86
AT H L FF DR P Y GRSW ELR KSWDDL+ LW+V +KE+N +
Sbjct: 96 ATPDHG-LWGFFPTDRTAL-STPTYDIECGRSWSIQELREKSWDDLHSLWWVCVKERNRI 153
Query: 87 MT---QQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTER 123
T +++ L A ++ + ER +R + IK VL ER
Sbjct: 154 ATSDMERKRLKAGYGEWESSERDRVIRVTQNGIKHVLRER 193
>sp|Q756Y8|RM04_ASHGO 54S ribosomal protein L4, mitochondrial OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=MRPL4 PE=3 SV=3
Length = 341
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 26 AAASMATSRHNPLEEFFENDR------GPDDQKPVYGRSWKASELRLKSWDDLNKLWYVL 79
AAA++ + +PL +FF+ R DD+ R W ELR KS+DDL+ LWY
Sbjct: 84 AAANLECNPEHPLWQFFDGGRFMRSAEELDDK----SRPWTVPELRRKSFDDLHSLWYAC 139
Query: 80 LKEKNMLMTQQQM-LHAQNLKFPNPERIPKVRKSMCRIKQVLTER 123
LKE+N+L + + + Q + + +VR +M RI+ VL+ER
Sbjct: 140 LKERNILAREMHLRRNMQEEGSAHAQLDERVRTTMWRIRHVLSER 184
>sp|Q6FK61|RM04_CANGA 54S ribosomal protein L4, mitochondrial OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MRPL4 PE=3 SV=1
Length = 315
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 36 NPLEEFFEND---RGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQM 92
+PL +FF + R P+D R+W ELR KS++DL+ LWY LKE+N+L + +
Sbjct: 66 HPLWQFFSDKKFMRRPEDLDTT-SRAWSIPELRRKSFEDLHSLWYTCLKERNILARENHL 124
Query: 93 LH--AQNLKFPNPERIPKVRKSMCRIKQVLTER 123
L A+N + + K+R +M RI+ VL+ER
Sbjct: 125 LKNAAKNNRNDYEDISEKIRTTMWRIRHVLSER 157
>sp|Q5B0N3|RM04_EMENI 54S ribosomal protein L4, mitochondrial OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=mrpl4 PE=3 SV=1
Length = 219
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 41 FFENDRG---PDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMT---QQQMLH 94
FF DR + +GRSW ELR KSW+DL+ LW+V LKEKN + T +++ L
Sbjct: 105 FFPKDRSALSTPEYDNAHGRSWSIQELREKSWEDLHSLWWVCLKEKNRIATSNLERKRLK 164
Query: 95 AQNLKFPNPERIPKVRKSMCRIKQVLTER 123
A ++ +R+ +R + IK VL ER
Sbjct: 165 AGYGEWEANQRLRTIRVTQLNIKHVLRER 193
>sp|A7EWR0|RM04_SCLS1 54S ribosomal protein L4, mitochondrial OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=MRPL4 PE=3 SV=1
Length = 191
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 55 YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMT---QQQMLHAQNLKFPNPERIPKVRK 111
+GR W A ELR KSW+DL+ LW++ KE+N + T ++ L A + + +R VR+
Sbjct: 64 HGRPWSAEELRGKSWEDLHSLWWICCKERNRIATESYERDRLEAGYGEEDSEKRDMTVRR 123
Query: 112 SMCRIKQVLTER 123
+ IKQVLTER
Sbjct: 124 TQRAIKQVLTER 135
>sp|A1DH31|RM04_NEOFI 54S ribosomal protein L4, mitochondrial OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=mrpl4 PE=3 SV=1
Length = 217
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 31 ATSRHNPLEEFFENDRG---PDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLM 87
AT H L FF DR + +GRSW ELR KSW+DL+ LW+V +KE+N +
Sbjct: 96 ATPDHG-LWGFFPRDRSALSTPEYDVAHGRSWSIQELREKSWEDLHCLWWVCVKERNRIA 154
Query: 88 T---QQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRR 132
T ++Q L A ++ ER +R + IK VL ER D +R
Sbjct: 155 TSNLERQRLKAGYGEWEASERDRTIRVTQNGIKHVLRERWYAWEDAKR 202
>sp|A4RHR8|RM04_MAGO7 54S ribosomal protein L4, mitochondrial OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MRPL4 PE=3
SV=1
Length = 302
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 51 QKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNP-----ER 105
Q +GRSW ELR KSW+DL+ LW++ +E+N + T + +K NP R
Sbjct: 135 QLSAHGRSWTVQELRGKSWEDLHALWWMCCRERNRIATAIRTRQFIGIKKDNPFDEAEAR 194
Query: 106 IPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMIN 141
V K+M IK VLTER D R+ A IN
Sbjct: 195 GRTVNKTMQAIKHVLTERFYAWEDARKLAMEDPEIN 230
>sp|A6SLT9|RM04_BOTFB 54S ribosomal protein L4, mitochondrial OS=Botryotinia fuckeliana
(strain B05.10) GN=mrpl4 PE=3 SV=1
Length = 252
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 55 YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMT---QQQMLHAQNLKFPNPERIPKVRK 111
+GR W A ELR KSW+DL+ LW++ KE+N + T ++Q L A +R VR+
Sbjct: 125 HGRPWSAEELRGKSWEDLHSLWWICCKERNRIATESYERQRLEAGYGDEDAEKRDMTVRR 184
Query: 112 SMCRIKQVLTER 123
+ IKQVLTER
Sbjct: 185 TQRAIKQVLTER 196
>sp|Q4X156|RM04_ASPFU 54S ribosomal protein L4, mitochondrial OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=mrpl4 PE=3 SV=1
Length = 217
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 31 ATSRHNPLEEFFENDRG---PDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLM 87
AT H L FF DR + +GRSW ELR KSW+DL+ LW+V +KE+N +
Sbjct: 96 ATPNHG-LWGFFPRDRSALSTPEYDIAHGRSWSIQELREKSWEDLHCLWWVCVKERNRIA 154
Query: 88 T---QQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRR 132
T ++Q L A ++ ER +R + IK VL ER D +R
Sbjct: 155 TSNLERQRLKAGYGEWEARERDRTIRITQNGIKHVLRERWYAWEDAKR 202
>sp|A5E713|RM04_LODEL 54S ribosomal protein L4, mitochondrial OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=MRPL4 PE=3 SV=1
Length = 296
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 6/74 (8%)
Query: 56 GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLK----FPNPERIPKVRK 111
R W ++ELR KS++DL++LWY++LKE+N+L + ++ + ++ F N + K+ K
Sbjct: 75 SREWTSAELRQKSFEDLHRLWYIILKERNILAREVRLAESIGMRDVKQFNNIDY--KLIK 132
Query: 112 SMCRIKQVLTERAI 125
S+ RIKQVL ER I
Sbjct: 133 SLRRIKQVLLERHI 146
>sp|Q6CWC4|RM04_KLULA 54S ribosomal protein L4, mitochondrial OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=MRPL4 PE=3 SV=1
Length = 332
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 26 AAASMATSRHNPLEEFFEND---RGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKE 82
AAA++ +PL +FF R P++ + R W ELR KS+ DL+ LWY LKE
Sbjct: 55 AAANLTCPDDHPLWQFFSEKKFLRTPEELDTL-SRPWTIPELRRKSFTDLHSLWYTCLKE 113
Query: 83 KNMLMTQQQMLH----AQNLKFPNPERIPKVRKSMCRIKQVLTER 123
+N+L + ++ AQ + + K+R +M RI+ VL+ER
Sbjct: 114 RNVLARENHLVQFNFEAQTEAYQDISE--KIRTTMWRIRHVLSER 156
>sp|Q0CXX1|RM04_ASPTN 54S ribosomal protein L4, mitochondrial OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=mrpl4 PE=3 SV=1
Length = 214
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 41 FFENDR---GPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMT---QQQMLH 94
FF DR + +GRSW ELR KSW+DL+ LW+V +KE+N + T +++ L
Sbjct: 105 FFPKDRQALSTPEYDHAHGRSWSIQELREKSWEDLHALWWVCVKERNRIATSNLERERLK 164
Query: 95 AQNLKFPNPERIPKVRKSMCRIKQVLTER 123
A ++ + ER +R + IK VL ER
Sbjct: 165 AGYGEYESSERDRVIRVTQNGIKHVLRER 193
>sp|A1C6F8|RM04_ASPCL 54S ribosomal protein L4, mitochondrial OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=mrpl4 PE=3 SV=1
Length = 217
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 55 YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMT---QQQMLHAQNLKFPNPERIPKVRK 111
+GRSW ELR KSWDDL+ LW+V +KE+N + T ++Q L A ++ +R +R
Sbjct: 122 HGRSWSIQELREKSWDDLHSLWWVCVKERNRIATSNLERQRLKAGYGEWEANDRDKVIRV 181
Query: 112 SMCRIKQVLTERAIEEPDPRR 132
+ IK VL ER D +R
Sbjct: 182 TQKSIKHVLRERWYAWEDAQR 202
>sp|Q6CF20|RM04_YARLI 54S ribosomal protein L4, mitochondrial OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=MRPL4 PE=3 SV=1
Length = 340
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 8/100 (8%)
Query: 36 NPLEEFFENDRG-PDDQKPVYG--RSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQM 92
+PL +FF D+ DQ+ R W +ELR KS++DL+ LWYV LKE+N+L+ ++++
Sbjct: 53 HPLWQFFCKDKKIVRDQRSFDSSTRPWSVAELRRKSFEDLHALWYVCLKERNILLKEERV 112
Query: 93 ---LHAQNLKFPNPERIPKVRKSMCRIKQVLTE--RAIEE 127
+H +N +V ++M I+ VL E RA EE
Sbjct: 113 TTRMHFENQNGGYRSEHDRVGETMVNIRHVLAERYRAFEE 152
>sp|A7TNQ2|RM04_VANPO 54S ribosomal protein L4, mitochondrial OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=MRPL4 PE=3
SV=1
Length = 322
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 26 AAASMATSRHNPLEEFFENDRGPDDQKPV--YGRSWKASELRLKSWDDLNKLWYVLLKEK 83
+A ++ +PL +FF + + D+ + + R W ELR KS++DL+ LWY LKE+
Sbjct: 55 SAKNIVCPEDHPLWQFFADKKFLRDRADLDNHSRPWTIPELRRKSFEDLHSLWYTSLKER 114
Query: 84 NMLMTQQQMLH-AQNLKFPNPERI-PKVRKSMCRIKQVLTER 123
N+L + +L A + E++ KVR +M RI+ VL+ER
Sbjct: 115 NILARENHLLKTAVESSDDSFEKVADKVRTTMWRIRHVLSER 156
>sp|Q1DNY5|RM04_COCIM 54S ribosomal protein L4, mitochondrial OS=Coccidioides immitis
(strain RS) GN=MRPL4 PE=3 SV=1
Length = 245
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 54 VYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMT---QQQMLHAQNLKFPNPERIPKVR 110
+GR+W ELR KSWDDL+ LW+V ++E+N + T +++ L A F R VR
Sbjct: 119 AHGRAWTIQELRQKSWDDLHCLWWVTVRERNRIATSNYERKRLAAGYGDFEADNRDKTVR 178
Query: 111 KSMCRIKQVLTER 123
+ IK VL ER
Sbjct: 179 ATQHAIKHVLRER 191
>sp|Q59RP7|RM04_CANAL 54S ribosomal protein L4, mitochondrial OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=MRPL4 PE=3 SV=1
Length = 309
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 6/74 (8%)
Query: 56 GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNL----KFPNPERIPKVRK 111
R W ++ELR KS++DL+K+WY+ LKE+N+L + ++ + + +F N +R K+ K
Sbjct: 76 SREWSSAELRQKSFEDLHKIWYLTLKERNILSREVRLGESLGMGDFRQFNNVDR--KLIK 133
Query: 112 SMCRIKQVLTERAI 125
+ RIKQVL ER +
Sbjct: 134 TQKRIKQVLLERQV 147
>sp|A3LYY9|RM04_PICST 54S ribosomal protein L4, mitochondrial OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=MRPL4 PE=3 SV=2
Length = 299
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 50 DQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKV 109
D+ + R W +ELR KS++DL+KLWY+ LKE+N+L + ++ A++L++ ++ +
Sbjct: 71 DELDMNSREWTFAELRRKSFEDLHKLWYLTLKERNILAREVRL--AESLRYSRTQQHDAL 128
Query: 110 RKSMC----RIKQVLTERAI 125
+ + RIKQVL ER +
Sbjct: 129 DEKLVTVQKRIKQVLLERQV 148
>sp|P36517|RM04_YEAST 54S ribosomal protein L4, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MRPL4 PE=1 SV=2
Length = 319
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 16/101 (15%)
Query: 36 NPLEEFFEND---RGPDDQKPV-YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQ 91
+PL +FF N R DD P + R W ELR KS++DL+ LWY L+E+N+L +
Sbjct: 66 HPLWQFFSNKKFIRSADDLPPSSHIRPWSIPELRHKSFNDLHSLWYNCLREQNVLARENH 125
Query: 92 ML-------HAQNLKFPNPERIPKVRKSMCRIKQVLTERAI 125
+L H + + N +R +M +I+ VL ER +
Sbjct: 126 LLKNIVGSTHDEFSELSN-----SIRTTMWQIRHVLNEREL 161
>sp|A7A1V9|RM04_YEAS7 54S ribosomal protein L4, mitochondrial OS=Saccharomyces cerevisiae
(strain YJM789) GN=MRPL4 PE=3 SV=1
Length = 319
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 16/101 (15%)
Query: 36 NPLEEFFEND---RGPDDQKPV-YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQ 91
+PL +FF N R DD P + R W ELR KS++DL+ LWY L+E+N+L +
Sbjct: 66 HPLWQFFSNKKFIRSADDLPPSSHIRPWSIPELRHKSFNDLHSLWYNCLREQNVLARENH 125
Query: 92 ML-------HAQNLKFPNPERIPKVRKSMCRIKQVLTERAI 125
+L H + + N +R +M +I+ VL ER +
Sbjct: 126 LLKNIVGSTHDEFSELSN-----SIRTTMWQIRHVLNEREL 161
>sp|A5DH98|RM04_PICGU 54S ribosomal protein L4, mitochondrial OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MRPL4 PE=3 SV=2
Length = 295
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 54 VYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLK--FPNPERIPKVRK 111
+ R+W +ELR KS++DL++LWY++LKE+N+L + ++ A N + + + K+
Sbjct: 71 IQSRAWTTAELRRKSFEDLHQLWYLVLKERNVLAREVRLADAINERNTHVHDQVDEKLLL 130
Query: 112 SMCRIKQVLTER 123
+ RIKQVL ER
Sbjct: 131 TQKRIKQVLLER 142
>sp|Q0U6J9|RM04_PHANO 54S ribosomal protein L4, mitochondrial OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=MRPL4 PE=3
SV=2
Length = 250
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 51 QKPV----YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQ---QMLHAQNLKFPNP 103
Q PV +GR+W ELR + WD L++LW+V +KE+N L T++ L A N
Sbjct: 105 QTPVDESRHGRAWTVGELRNQDWDALHQLWWVCVKERNRLATEKIERARLDAGYGDQENK 164
Query: 104 ERIPKVRKSMCRIKQVLTER 123
+R V+++M I L+ER
Sbjct: 165 DRDTVVQETMKAILDTLSER 184
>sp|Q6BQK3|RM04_DEBHA 54S ribosomal protein L4, mitochondrial OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=MRPL4 PE=3 SV=2
Length = 302
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 14/80 (17%)
Query: 54 VYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQM--------LHAQNLKFPNPER 105
+ R W ELR KS++DL+KLWY++LKE+N+L + ++ HA N +
Sbjct: 74 IQSRPWGLPELRRKSFEDLHKLWYLILKERNILAREVRLADSFNERSTHAHN------DL 127
Query: 106 IPKVRKSMCRIKQVLTERAI 125
K+ + RIKQ L ER +
Sbjct: 128 DDKLTLTQKRIKQALIERQV 147
>sp|A4SSZ8|RL29_AERS4 50S ribosomal protein L29 OS=Aeromonas salmonicida (strain A449)
GN=rpmC PE=3 SV=1
Length = 63
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIK 117
KA +LR KS D+LN+ LL+E+ NM M A + + +VR+ + RIK
Sbjct: 1 MKAQDLRQKSVDELNQELLGLLREQFNMRM------QASTGQLAQTHTLKQVRRDVARIK 54
Query: 118 QVLTERA 124
VLTE+A
Sbjct: 55 TVLTEKA 61
>sp|P55840|RL29_AGGAC 50S ribosomal protein L29 OS=Aggregatibacter actinomycetemcomitans
GN=rpmC PE=3 SV=1
Length = 63
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KA ELR KS ++LN LL E+ L Q A + ++ +VR+S+ +IK
Sbjct: 1 MKAQELRTKSVEELNAELVNLLGEQFKLRMQ-----AATGQLQQTHQLKQVRRSIAQIKT 55
Query: 119 VLTERAIE 126
VLTE+A E
Sbjct: 56 VLTEKAGE 63
>sp|Q9CL39|RL29_PASMU 50S ribosomal protein L29 OS=Pasteurella multocida (strain Pm70)
GN=rpmC PE=3 SV=1
Length = 63
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KA ELR KS ++LN LL E+ L Q A + ++ +VR+S+ ++K
Sbjct: 1 MKAQELRTKSVEELNAELVNLLGEQFKLRMQ-----AATGQLQQTHQLKQVRRSIAQVKT 55
Query: 119 VLTERAIE 126
VLTE+A E
Sbjct: 56 VLTEKAGE 63
>sp|A1S226|RL29_SHEAM 50S ribosomal protein L29 OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=rpmC PE=3 SV=1
Length = 63
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR KS ++LN LL+E+ L +M HA + ++ +VR+++ R+K
Sbjct: 1 MKASELREKSVEELNAELLGLLREQFNL----RMQHATG-QLAQTHQLKQVRRNIARVKT 55
Query: 119 VLTERA 124
++T +A
Sbjct: 56 IITSKA 61
>sp|B6IRR4|RL29_RHOCS 50S ribosomal protein L29 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rpmC PE=3 SV=1
Length = 69
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 60 KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
KA+++R KS D+LN+ L KE+ L Q+ + + N R+ +VR+ + RIK +
Sbjct: 3 KATDIRTKSADELNEQLLQLKKEQFNLRFQR-----ASGQLENTARVREVRRDIARIKTI 57
Query: 120 LTERA 124
L ER
Sbjct: 58 LGERT 62
>sp|B8F763|RL29_HAEPS 50S ribosomal protein L29 OS=Haemophilus parasuis serovar 5 (strain
SH0165) GN=rpmC PE=3 SV=1
Length = 63
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KA ELR KS ++LN LL E+ L Q A + ++ +VR+S+ ++K
Sbjct: 1 MKAQELRNKSVEELNGELVNLLGEQFKLRMQ-----AATGQLQQTHQLKQVRRSIAQVKT 55
Query: 119 VLTERAIE 126
VLTE+A E
Sbjct: 56 VLTEKAGE 63
>sp|Q1LI45|RL29_RALME 50S ribosomal protein L29 OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=rpmC PE=3 SV=1
Length = 64
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR K LN+ LLK + L Q+ QN ++ KVRK + R++
Sbjct: 1 MKASELRGKDAAGLNQELSELLKAQFSLRMQKATQQLQN-----TSQLKKVRKDIARVQT 55
Query: 119 VLTERA 124
VLTE+A
Sbjct: 56 VLTEKA 61
>sp|B3R7R5|RL29_CUPTR 50S ribosomal protein L29 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rpmC PE=3 SV=1
Length = 64
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR K LN+ LLK + L Q+ QN ++ KVRK + R++
Sbjct: 1 MKASELRGKDAAGLNQELSELLKAQFSLRMQKATQQLQN-----TSQLKKVRKDIARVQT 55
Query: 119 VLTERA 124
VLTE+A
Sbjct: 56 VLTEKA 61
>sp|Q46WF2|RL29_CUPPJ 50S ribosomal protein L29 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rpmC PE=3 SV=1
Length = 64
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR K LN+ LLK + L Q+ QN ++ KVRK + R++
Sbjct: 1 MKASELRGKDAAGLNQELSELLKAQFSLRMQKATQQLQN-----TSQLKKVRKDIARVQT 55
Query: 119 VLTERA 124
VLTE+A
Sbjct: 56 VLTEKA 61
>sp|B0UX21|RL29_HAES2 50S ribosomal protein L29 OS=Haemophilus somnus (strain 2336)
GN=rpmC PE=3 SV=1
Length = 63
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KA ELR K+ ++LN LL E+ L Q A + ++ +VR+S+ ++K
Sbjct: 1 MKAQELRTKTVEELNAELVNLLGEQFKLRMQ-----AATGQLQQTHQLKQVRRSIAQVKT 55
Query: 119 VLTERA 124
VLTE+A
Sbjct: 56 VLTEKA 61
>sp|Q0I155|RL29_HAES1 50S ribosomal protein L29 OS=Haemophilus somnus (strain 129Pt)
GN=rpmC PE=3 SV=1
Length = 63
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KA ELR K+ ++LN LL E+ L Q A + ++ +VR+S+ ++K
Sbjct: 1 MKAQELRTKTVEELNAELVNLLGEQFKLRMQ-----AATGQLQQTHQLKQVRRSIAQVKT 55
Query: 119 VLTERA 124
VLTE+A
Sbjct: 56 VLTEKA 61
>sp|A1REC2|RL29_SHESW 50S ribosomal protein L29 OS=Shewanella sp. (strain W3-18-1)
GN=rpmC PE=3 SV=1
Length = 63
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR KS ++LN LL+E+ L +M HA + ++ VR+++ R+K
Sbjct: 1 MKASELREKSVEELNAELLGLLREQFNL----RMQHATG-QLTQTHQLKLVRRNIARVKT 55
Query: 119 VLTERA 124
++T +A
Sbjct: 56 IITSKA 61
>sp|Q0I097|RL29_SHESR 50S ribosomal protein L29 OS=Shewanella sp. (strain MR-7) GN=rpmC
PE=3 SV=1
Length = 63
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR KS ++LN LL+E+ L +M HA + ++ VR+++ R+K
Sbjct: 1 MKASELREKSVEELNAELLGLLREQFNL----RMQHATG-QLTQTHQLKLVRRNIARVKT 55
Query: 119 VLTERA 124
++T +A
Sbjct: 56 IITSKA 61
>sp|Q0HNS9|RL29_SHESM 50S ribosomal protein L29 OS=Shewanella sp. (strain MR-4) GN=rpmC
PE=3 SV=1
Length = 63
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR KS ++LN LL+E+ L +M HA + ++ VR+++ R+K
Sbjct: 1 MKASELREKSVEELNAELLGLLREQFNL----RMQHATG-QLTQTHQLKLVRRNIARVKT 55
Query: 119 VLTERA 124
++T +A
Sbjct: 56 IITSKA 61
>sp|A0KRN2|RL29_SHESA 50S ribosomal protein L29 OS=Shewanella sp. (strain ANA-3) GN=rpmC
PE=3 SV=1
Length = 63
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR KS ++LN LL+E+ L +M HA + ++ VR+++ R+K
Sbjct: 1 MKASELREKSVEELNAELLGLLREQFNL----RMQHATG-QLTQTHQLKLVRRNIARVKT 55
Query: 119 VLTERA 124
++T +A
Sbjct: 56 IITSKA 61
>sp|A4YBX5|RL29_SHEPC 50S ribosomal protein L29 OS=Shewanella putrefaciens (strain CN-32
/ ATCC BAA-453) GN=rpmC PE=3 SV=1
Length = 63
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR KS ++LN LL+E+ L +M HA + ++ VR+++ R+K
Sbjct: 1 MKASELREKSVEELNAELLGLLREQFNL----RMQHATG-QLTQTHQLKLVRRNIARVKT 55
Query: 119 VLTERA 124
++T +A
Sbjct: 56 IITSKA 61
>sp|Q8EK61|RL29_SHEON 50S ribosomal protein L29 OS=Shewanella oneidensis (strain MR-1)
GN=rpmC PE=3 SV=1
Length = 63
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR KS ++LN LL+E+ L +M HA + ++ VR+++ R+K
Sbjct: 1 MKASELREKSVEELNAELLGLLREQFNL----RMQHATG-QLTQTHQLKLVRRNIARVKT 55
Query: 119 VLTERA 124
++T +A
Sbjct: 56 IITSKA 61
>sp|Q12SV1|RL29_SHEDO 50S ribosomal protein L29 OS=Shewanella denitrificans (strain OS217
/ ATCC BAA-1090 / DSM 15013) GN=rpmC PE=3 SV=1
Length = 63
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR KS ++LN LL+E+ L +M HA + ++ VR+++ R+K
Sbjct: 1 MKASELREKSVEELNTELLGLLREQFNL----RMQHATG-QLTQTNQLKLVRRNIARVKT 55
Query: 119 VLTERA 124
++T +A
Sbjct: 56 IITSKA 61
>sp|C1DAS5|RL29_LARHH 50S ribosomal protein L29 OS=Laribacter hongkongensis (strain
HLHK9) GN=rpmC PE=3 SV=1
Length = 62
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEK---NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCR 115
KASELR KS D+L LLK + M + QQ+ LK KVR+ + R
Sbjct: 1 MKASELRAKSVDELKTELLSLLKAQFGLRMQLATQQLAKTSELK--------KVRRDIAR 52
Query: 116 IKQVLTERA 124
++ +L+E+A
Sbjct: 53 VRTILSEKA 61
>sp|A9KWB0|RL29_SHEB9 50S ribosomal protein L29 OS=Shewanella baltica (strain OS195)
GN=rpmC PE=3 SV=1
Length = 63
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 59 WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ 118
KASELR KS ++LN LL+E+ L +M HA + ++ VR+++ R+K
Sbjct: 1 MKASELREKSVEELNAELLGLLREQFNL----RMQHATG-QLTQTNQLKLVRRNIARVKT 55
Query: 119 VLTERA 124
++T +A
Sbjct: 56 IITSKA 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,587,387
Number of Sequences: 539616
Number of extensions: 1750936
Number of successful extensions: 6374
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 6189
Number of HSP's gapped (non-prelim): 261
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)