Query 032302
Match_columns 143
No_of_seqs 226 out of 931
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 20:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_V 50S ribosomal protein L 99.8 2.1E-20 7.2E-25 127.0 6.4 64 59-128 1-65 (67)
2 1r73_A TM1492, 50S ribosomal p 99.8 5E-20 1.7E-24 124.8 7.4 62 59-126 1-63 (66)
3 1vq8_V 50S ribosomal protein L 99.8 9.2E-20 3.2E-24 125.1 7.1 63 59-127 4-68 (71)
4 3r8s_Y 50S ribosomal protein L 99.8 1.8E-20 6.3E-25 125.9 3.5 61 59-125 1-62 (63)
5 3v2d_2 50S ribosomal protein L 99.8 9.6E-20 3.3E-24 125.4 6.9 64 57-126 6-70 (72)
6 3j21_W 50S ribosomal protein L 99.8 1E-18 3.4E-23 120.3 8.0 64 59-128 1-66 (72)
7 3iz5_c 60S ribosomal protein L 99.7 7.2E-17 2.5E-21 121.4 6.0 64 57-126 4-68 (124)
8 2zkr_v 60S ribosomal protein L 99.7 1.4E-16 4.8E-21 119.7 6.9 64 59-128 4-69 (123)
9 4a17_U RPL35, 60S ribosomal pr 99.7 8.2E-17 2.8E-21 121.1 5.4 63 58-126 4-68 (124)
10 3jyw_X 60S ribosomal protein L 99.6 1E-17 3.6E-22 119.1 -0.3 62 58-127 2-64 (86)
11 3bbo_Z Ribosomal protein L29; 99.6 1.2E-16 4E-21 125.8 5.3 73 59-137 65-139 (173)
12 3u5e_h 60S ribosomal protein L 99.6 1.7E-15 5.7E-20 113.4 8.2 60 59-126 4-64 (120)
13 3i9y_A Sensor protein; stacked 65.4 24 0.00082 29.0 7.6 47 96-142 179-225 (276)
14 1ybz_A Chorismate mutase; cons 49.5 44 0.0015 22.7 5.7 59 61-120 19-78 (91)
15 3i9w_A Sensor protein TORS; st 47.7 29 0.001 28.6 5.3 45 98-142 191-235 (290)
16 2lky_A Uncharacterized protein 25.9 1E+02 0.0035 22.3 4.6 44 65-114 39-89 (112)
17 3ol3_A Putative uncharacterize 21.7 1.7E+02 0.0057 20.9 5.0 50 65-114 42-96 (107)
18 2kvc_A Putative uncharacterize 20.7 94 0.0032 22.1 3.5 44 65-114 37-87 (103)
19 2gtv_X CM, chorismate mutase; 20.4 1.4E+02 0.0049 20.7 4.4 52 61-113 5-65 (104)
No 1
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=99.81 E-value=2.1e-20 Score=126.99 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=61.1
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302 59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEP 128 (143)
Q Consensus 59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~ 128 (143)
|++.|||.||.+||++.+.++++|+ |++| |+++|+++||++|+.||++||||+||++||..+..
T Consensus 1 Mk~~elr~~s~~EL~~~l~elk~ELf~LR~------q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~~~ 65 (67)
T 2zjr_V 1 MKPSEMRNLQATDFAKEIDARKKELMELRF------QAAAGQLAQPHRVRQLRREVAQLNTVKAELARKGE 65 (67)
T ss_dssp CCSTTTTTSCHHHHHHHHHTHHHHHHHHHH------HHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999 9999 99999999999999999999999999999987654
No 2
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=99.81 E-value=5e-20 Score=124.81 Aligned_cols=62 Identities=26% Similarity=0.316 Sum_probs=59.7
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302 59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIE 126 (143)
Q Consensus 59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a 126 (143)
|++.|||.||.+||++.+.++++|+ |++| |+++||++||++|+.||++||||+||++||+.+
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~ELf~LR~------q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (66)
T 1r73_A 1 MKASELRNYTDEELKNLLEEKKRQLMELRF------QLAMGQLKNTSLIKLTKRDIARIKTILRERELG 63 (66)
T ss_dssp CCCSHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHccCccCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999 9999 999999999999999999999999999999863
No 3
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=99.80 E-value=9.2e-20 Score=125.13 Aligned_cols=63 Identities=24% Similarity=0.168 Sum_probs=59.5
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhh-CCCCCCcchHHHHHHHHHHHHHHHHHHhhC
Q 032302 59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQN-LKFPNPERIPKVRKSMCRIKQVLTERAIEE 127 (143)
Q Consensus 59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~-~ql~np~rirkVRrtIARIkTVL~ER~~a~ 127 (143)
|++.|||.||.+||.+.+.++++|+ |++| |+++ ||++||++|+.|||+||||+||++||+.+.
T Consensus 4 mk~~elr~~s~~EL~~~l~elk~ELf~LR~------q~atggql~n~~~ir~vRr~IARi~Tvl~er~~~~ 68 (71)
T 1vq8_V 4 LHVQEIRDMTPAEREAELDDLKTELLNARA------VQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQ 68 (71)
T ss_dssp SCHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhcCCccChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999 9999 9999 799999999999999999999999998764
No 4
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=99.80 E-value=1.8e-20 Score=125.94 Aligned_cols=61 Identities=36% Similarity=0.494 Sum_probs=59.0
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 032302 59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAI 125 (143)
Q Consensus 59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~ 125 (143)
|++.|||.||.+||++.+.++++|+ |++| |+++||++||++|+.|||+||||+||++||+.
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~Elf~LR~------q~atgql~n~~~ir~vRr~IARi~Tvl~er~~ 62 (63)
T 3r8s_Y 1 MKAKELREKSVEELNTELLNLLREQFNLRM------QAASGQLQQSHLLKQVRRDVARVKTLLNEKAG 62 (63)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHTHHHHHHHH------HHHTTCCSCGGGTHHHHHHHHHHHHTTTSSTT
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCCcCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999 9999 99999999999999999999999999999864
No 5
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=99.80 E-value=9.6e-20 Score=125.42 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=61.2
Q ss_pred CCCChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302 57 RSWKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIE 126 (143)
Q Consensus 57 RaWk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a 126 (143)
..|++.|||.+|.+||.+.+.++++|+ |++| |+++||++||++|+.|||+||||+||++||+.+
T Consensus 6 ~~mK~~elr~~s~eEL~~~L~elk~ELf~LR~------q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~ 70 (72)
T 3v2d_2 6 VRKQLEEARKLSPVELEKLVREKKRELMELRF------QASIGQLSQNHKIRDLKRQIARLLTVLNEKRRQ 70 (72)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHTTCCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 348899999999999999999999999 9999 999999999999999999999999999999765
No 6
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.77 E-value=1e-18 Score=120.31 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=61.2
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCC-CCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302 59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLK-FPNPERIPKVRKSMCRIKQVLTERAIEEP 128 (143)
Q Consensus 59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~q-l~np~rirkVRrtIARIkTVL~ER~~a~~ 128 (143)
|++.|||.+|.+||.+.+.++++|+ ||+| |+++|| ++||++|+.||++||||+||++||+.+..
T Consensus 1 MK~~elr~~s~~EL~~~L~elk~ELf~LR~------q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~ 66 (72)
T 3j21_W 1 MKPSEIREMSIEEIDAKIRELRLQLAKERG------LLTMGTSLENPMVIRNLRRDIARLLTIKKEKLRERE 66 (72)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999 9999 999999 99999999999999999999999987643
No 7
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=99.66 E-value=7.2e-17 Score=121.38 Aligned_cols=64 Identities=30% Similarity=0.282 Sum_probs=61.3
Q ss_pred CCCChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302 57 RSWKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIE 126 (143)
Q Consensus 57 RaWk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a 126 (143)
-.+++.|||.+|.+||.+.+.++.+|+ ||+| |+++||++||++|+.||++||||+|||+|++.+
T Consensus 4 ~~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRf------q~atgqlen~~rIr~vRRdIARi~Tvl~er~~~ 68 (124)
T 3iz5_c 4 GKVKAGELWNKSKDDLTKQLAELKTELGQLRI------QKVASSGSKLNRIHDIRKSIARVLTVINAKQRA 68 (124)
T ss_dssp CCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999 9999 999999999999999999999999999999765
No 8
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.66 E-value=1.4e-16 Score=119.67 Aligned_cols=64 Identities=27% Similarity=0.214 Sum_probs=57.5
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhC-CCCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302 59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNL-KFPNPERIPKVRKSMCRIKQVLTERAIEEP 128 (143)
Q Consensus 59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~-ql~np~rirkVRrtIARIkTVL~ER~~a~~ 128 (143)
|++.|||.+|.+||.+.+.++++|+ ||+| |+++| +++||++|+.||++||||+||++|++.+..
T Consensus 4 mK~~ELR~~s~eEL~~~L~eLK~ELf~LRf------q~atgq~len~~rir~vRrdIARI~Tvl~er~~~~l 69 (123)
T 2zkr_v 4 IKARDLRGKKKEELLKQLDDLKVELSQLRV------AKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 69 (123)
T ss_dssp CCHHHHTTSCHHHHHHHHHHHHHHHHHHHH------HHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999 9999 99999 599999999999999999999999987643
No 9
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=99.65 E-value=8.2e-17 Score=121.09 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=60.4
Q ss_pred CCChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhC-CCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302 58 SWKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNL-KFPNPERIPKVRKSMCRIKQVLTERAIE 126 (143)
Q Consensus 58 aWk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~-ql~np~rirkVRrtIARIkTVL~ER~~a 126 (143)
.+++.|||.+|.+||.+.+.++.+|+ ||+| |+++| +++||++|+.||++||||+|||+|++.+
T Consensus 4 ~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRf------q~atggqlen~~rIr~vRRdIARi~Tvl~er~~~ 68 (124)
T 4a17_U 4 SVRVFKLRTQTEEQLVGELGKLQTELSQLRI------AKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQ 68 (124)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 9999 99999 9999999999999999999999999765
No 10
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.64 E-value=1e-17 Score=119.07 Aligned_cols=62 Identities=29% Similarity=0.267 Sum_probs=59.1
Q ss_pred CCChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhC
Q 032302 58 SWKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEE 127 (143)
Q Consensus 58 aWk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~ 127 (143)
.|++.|||.||.+||.+.+.++++|+ ||+| |+.+||+ |++|+.|||+||||+|||+||+.+.
T Consensus 2 ~MKa~ELR~~S~eEL~~~L~eLK~ELf~LRf------q~atgql--p~rIr~vRRdIARikTvl~er~~~~ 64 (86)
T 3jyw_X 2 GVKAYELRTKSKEQLASQLVDLKKELAELKV------QKLSRPS--LPKIKTVRKSIACVLTVINEQQAAA 64 (86)
T ss_dssp CSCHHHHHTSCHHHHHHHHHHHTTTHHHHHH------HHHTCCC--HHHHTCCSTTTHHHHTTTTHHHHHH
T ss_pred CCCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHHCCC--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 9999 9999999 9999999999999999999997653
No 11
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.64 E-value=1.2e-16 Score=125.81 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=59.9
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCCC-hhhHHHH
Q 032302 59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPD-PRRSAEM 136 (143)
Q Consensus 59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~~-~~~~~~~ 136 (143)
.++.|||.||.+||.+.+.++++|+ ||+| |+++||++||++|+.|||+||||+|||+||+.+... .+.+..+
T Consensus 65 ~Ka~ELR~lS~eEL~ekL~eLKkELFnLRf------QkATGQLeNpsrIR~VRRdIARIkTVLrErel~~~~~kr~SRk~ 138 (173)
T 3bbo_Z 65 AELKEIRSKTTEQLQEEVVDLKGELFMLRL------QKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKL 138 (173)
T ss_dssp SCHHHHHHSCHHHHHHHHHHHTTHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 7899999999999999999999999 9999 999999999999999999999999999999886543 3333343
Q ss_pred H
Q 032302 137 K 137 (143)
Q Consensus 137 ~ 137 (143)
+
T Consensus 139 ~ 139 (173)
T 3bbo_Z 139 D 139 (173)
T ss_dssp -
T ss_pred H
Confidence 3
No 12
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=99.61 E-value=1.7e-15 Score=113.37 Aligned_cols=60 Identities=32% Similarity=0.284 Sum_probs=58.1
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302 59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIE 126 (143)
Q Consensus 59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a 126 (143)
+++.|||++|.+||.+.+.++.+|+ ||+| |+++||+ |++|+.||++||||+|||+|++.+
T Consensus 4 mK~~ELR~~s~eEL~~~L~eLK~ELf~LRf------q~atgql--~~~Ir~vRR~IARi~Tvl~er~~~ 64 (120)
T 3u5e_h 4 VKAYELRTKSKEQLASQLVDLKKELAELKV------QKLSRPS--LPKIKTVRKSIACVLTVINEQQRE 64 (120)
T ss_dssp CCHHHHTTSCHHHHHHHHHHHHHHHHHHHH------HHTTSSC--CTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHHCCc--chhHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999 9999 9999999 999999999999999999999765
No 13
>3i9y_A Sensor protein; stacked two four-helix bundles, ATP-binding, kinase, nucleotide-binding, phosphoprotein, transferase, transmembrane; 2.16A {Vibrio parahaemolyticus} PDB: 3o1i_A* 3o1h_A* 3o1j_A
Probab=65.39 E-value=24 Score=28.95 Aligned_cols=47 Identities=19% Similarity=0.436 Sum_probs=42.4
Q ss_pred hhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHhhh
Q 032302 96 QNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINA 142 (143)
Q Consensus 96 ~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~~~~~~~~~~~~in~ 142 (143)
..+.+.++.++..++....+-..+|..|....+||.++.+|...+..
T Consensus 179 ~~~~~~~~~~l~~l~~~~~~~l~il~rRv~~I~DP~R~~q~~~lL~~ 225 (276)
T 3i9y_A 179 EARTLTNVDRIQQIQTAFENNLKIMKRRVLAVEDPTRSKQMSQLLTE 225 (276)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 44667889999999999999999999999999999999999987754
No 14
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=49.51 E-value=44 Score=22.71 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=42.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHhhhchHHHHHHHhh-CCCCCCcchHHHHHHHHHHHHHH
Q 032302 61 ASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN-LKFPNPERIPKVRKSMCRIKQVL 120 (143)
Q Consensus 61 ~~ELR~KS~eDLhkLw~~LlKErNlr~Te~~~~q~~~-~ql~np~rirkVRrtIARIkTVL 120 (143)
..+||. ..|++-..+..|+.||.-+..+--..+... .+..+|.|-..|-..+..|..|.
T Consensus 19 L~~lR~-~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~i~~if 78 (91)
T 1ybz_A 19 LKLLRK-EIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGEFREIF 78 (91)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHGGGHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHHHHH
Confidence 677876 488888899999999966565555566544 47888999888777665544433
No 15
>3i9w_A Sensor protein TORS; stacked two four-helix bundles, ATP-binding, cell inner membrane, cell membrane, kinase, membrane; 2.70A {Escherichia coli k-12}
Probab=47.74 E-value=29 Score=28.61 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=39.6
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHhhh
Q 032302 98 LKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINA 142 (143)
Q Consensus 98 ~ql~np~rirkVRrtIARIkTVL~ER~~a~~~~~~~~~~~~~in~ 142 (143)
+.+.++.++..++....+-..+|..|....+||.++.+|...+..
T Consensus 191 ~~~~~~~~l~~l~~~~~~~l~il~rRv~~I~DP~R~~q~~~lL~~ 235 (290)
T 3i9w_A 191 GLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTT 235 (290)
T ss_dssp CSHHHHHTHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 344557889999999999999999999999999999999987754
No 16
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=25.90 E-value=1e+02 Score=22.26 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=33.6
Q ss_pred hcCCHHHHHHHHHHHHHHH-------hhhchHHHHHHHhhCCCCCCcchHHHHHHHH
Q 032302 65 RLKSWDDLNKLWYVLLKEK-------NMLMTQQQMLHAQNLKFPNPERIPKVRKSMC 114 (143)
Q Consensus 65 R~KS~eDLhkLw~~LlKEr-------Nlr~Te~~~~q~~~~ql~np~rirkVRrtIA 114 (143)
|.+|.+|+.+.-..|..+- .... ...+.++|.|+-|..|+.-++
T Consensus 39 r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I------~~vt~~~Ps~eDI~RV~arLa 89 (112)
T 2lky_A 39 RRLTNDEIKAIAEDLEKRAHFDHIDIGVLI------TQMTDEMPREEDIERVRRHLA 89 (112)
T ss_dssp TTCCHHHHHHHHHHHHHHCCCSCCCSHHHH------HHHTTCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHH------HHHhccCCCHHHHHHHHHHHH
Confidence 8899999999888887662 3333 678889999988888876554
No 17
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=21.66 E-value=1.7e+02 Score=20.87 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=34.7
Q ss_pred hcCCHHHHHHHHHHHHHHHhh--hchHH---HHHHHhhCCCCCCcchHHHHHHHH
Q 032302 65 RLKSWDDLNKLWYVLLKEKNM--LMTQQ---QMLHAQNLKFPNPERIPKVRKSMC 114 (143)
Q Consensus 65 R~KS~eDLhkLw~~LlKErNl--r~Te~---~~~q~~~~ql~np~rirkVRrtIA 114 (143)
|.+|.+|+.+.-..|.++..- -++.. ....+.+.++|.|+.|..|+.-++
T Consensus 42 R~Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLa 96 (107)
T 3ol3_A 42 RSLTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLA 96 (107)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 568999998888877776431 12211 123678899999999888887654
No 18
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=20.67 E-value=94 Score=22.09 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=32.9
Q ss_pred hcCCHHHHHHHHHHHHHHH-------hhhchHHHHHHHhhCCCCCCcchHHHHHHHH
Q 032302 65 RLKSWDDLNKLWYVLLKEK-------NMLMTQQQMLHAQNLKFPNPERIPKVRKSMC 114 (143)
Q Consensus 65 R~KS~eDLhkLw~~LlKEr-------Nlr~Te~~~~q~~~~ql~np~rirkVRrtIA 114 (143)
|.+|.+|+.+.-..|..+- .... ...+.++|.|+-|..|+.-++
T Consensus 37 r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I------~~vt~~~Ps~eDI~RV~arLa 87 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMRLGDFDQIDIGVVI------THFTDELPSPEDVERVRARLA 87 (103)
T ss_dssp TTSCHHHHHHHHHHHHHHTSSCSSCHHHHH------HSCCSSCSCHHHHHHHHHHHG
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHH------HHHhccCCCHHHHHHHHHHHH
Confidence 7899999999888777662 2333 677889999988888876554
No 19
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=20.41 E-value=1.4e+02 Score=20.66 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=37.9
Q ss_pred hHHHhcCCHHHHHHHHH--------HHHHHHhhhchHHHHHHHhhC-CCCCCcchHHHHHHH
Q 032302 61 ASELRLKSWDDLNKLWY--------VLLKEKNMLMTQQQMLHAQNL-KFPNPERIPKVRKSM 113 (143)
Q Consensus 61 ~~ELR~KS~eDLhkLw~--------~LlKErNlr~Te~~~~q~~~~-ql~np~rirkVRrtI 113 (143)
..+||. ..|++-..+. .|+.||.-+..+--+.+...| +..+|+|-+.|-..+
T Consensus 5 L~~lR~-~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~ 65 (104)
T 2gtv_X 5 LAEIRK-KIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRI 65 (104)
T ss_dssp HHHHHH-HHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHH
Confidence 556765 4788888888 899999777777767776554 778888876665443
Done!