BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032303
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O5U|A Chain A, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
Thermotoga Maritima At 1.83 A Resolution
pdb|1O5U|B Chain B, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
Thermotoga Maritima At 1.83 A Resolution
Length = 101
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 50 VRVERQVSPERLKELDVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRF 109
V++E+ +PE+LKEL V +W +W+ + W + ++ YI EG+V V E ++Y+
Sbjct: 15 VKIEKP-TPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYV-I 72
Query: 110 LAGDLIRYPK 119
GDL+ +PK
Sbjct: 73 EKGDLVTFPK 82
>pdb|1LKN|A Chain A, Solution Nmr Structure Of Protein Tm_1112 From Thermotoga
Maritima. Ontario Centre For Structural Proteomics
Target Tm1112_1_89; Northeast Structural Genomics
Consortium Target Vt74.
pdb|2K9Z|A Chain A, Nmr Structure Of The Protein Tm1112
Length = 89
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 49 NVRVERQVSPERLKELDVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMR 108
V++E+ +PE+LKEL V +W +W+ + W + ++ YI EG+V V E ++Y+
Sbjct: 2 EVKIEKP-TPEKLKELSVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYV- 59
Query: 109 FLAGDLIRYPK 119
GDL+ +PK
Sbjct: 60 IEKGDLVTFPK 70
>pdb|2PYT|A Chain A, Crystal Structure Of A Putative Ethanolamine Utilization
Protein Q (Eutq, Stm2468) From Salmonella Typhimurium
Lt2 At 1.90 A Resolution
pdb|2PYT|B Chain B, Crystal Structure Of A Putative Ethanolamine Utilization
Protein Q (Eutq, Stm2468) From Salmonella Typhimurium
Lt2 At 1.90 A Resolution
Length = 133
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 79 LPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSFR 138
PW D++ + EGE+ V EG + AGD+ PK + + F P R+ +
Sbjct: 69 FPWTLNYDEIDXVLEGELHVRHEGETXIAK--AGDVXFIPK--GSSIEFGTPTSVRFLYV 124
Query: 139 AY 140
A+
Sbjct: 125 AW 126
>pdb|2O5A|A Chain A, Crystal Structure Of Q9kd89 From Bacillus Halodurans.
Northeast Structural Genomics Target Bhr21
pdb|2O5A|B Chain B, Crystal Structure Of Q9kd89 From Bacillus Halodurans.
Northeast Structural Genomics Target Bhr21
Length = 125
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 30 LPCHGIRAMRVEKPLEELYNVRVERQVSPERLKELDVSRWSMWKTG 75
L CHG +V+ EL V E+ + +RL+ + +RW + G
Sbjct: 38 LICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLIDLG 83
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 36 RAMRVEKPLEELYNVRVERQVSPERLKELDVSRWSMWKTGKCKLPWDWQVDQLVYI---- 91
R++R K +EL N ++ SPE ++VSR+++ + W +D+LV I
Sbjct: 35 RSIRTFKDDKELEN---GQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFE 91
Query: 92 EEGEVRVVP 100
++G + V+P
Sbjct: 92 KKGSITVMP 100
>pdb|2XIO|A Chain A, Structure Of Putative Deoxyribonuclease Tatdn1 Isoform A
Length = 301
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 13 FSVKKTSRDSRKLNNRNLPCHGIR------AMRVEKPLE---ELYNVRVE 53
F KK L +RN PCH I+ A+R E PLE LYN ++
Sbjct: 239 FPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIK 288
>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
Length = 364
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 46 ELYNVRVERQVSPERLKELDVSRWSM--WKTGKCKLPWDWQVDQLVYIEEGEVR 97
E ++ V+P R +L++ + M W TG LPW+ + Y+ + ++R
Sbjct: 226 EFTSIDAHNGVAPSRRGDLEILGYCMIQWLTG--HLPWEDNLKDPKYVRDSKIR 277
>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
Length = 361
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 46 ELYNVRVERQVSPERLKELDVSRWSM--WKTGKCKLPWDWQVDQLVYIEEGEVR 97
E ++ V+P R +L++ + M W TG LPW+ + Y+ + ++R
Sbjct: 226 EFTSIDAHNGVAPSRRGDLEILGYCMIQWLTG--HLPWEDNLKDPKYVRDSKIR 277
>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
1(Vrk1)
Length = 368
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 46 ELYNVRVERQVSPERLKELDVSRWSM--WKTGKCKLPWDWQVDQLVYIEEGEVR 97
E ++ V+P R +L++ + M W TG LPW+ + Y+ + ++R
Sbjct: 226 EFTSIDAHNGVAPSRRGDLEILGYCMIQWLTG--HLPWEDNLKDPKYVRDSKIR 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,774,878
Number of Sequences: 62578
Number of extensions: 200342
Number of successful extensions: 354
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 11
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)