BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032303
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q87PC0|RLMKL_VIBPA Ribosomal RNA large subunit methyltransferase K/L OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rlmL PE=3 SV=1
Length = 707
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 24 KLNNRNLPCHGIRAMRVEKPLEELYNVRVERQVSPE---RLKEL--DVSRWSMWKTGKCK 78
KLNN LPCH E+ +E+ Q++P+ RLK+ + +W+ + C
Sbjct: 363 KLNNGALPCHQKNYSIAERSADEVKGADTNTQIAPDFSNRLKKNIGKIGKWARKEKLDCY 422
Query: 79 LPWDWQV-----------DQLVYIEEGEVRVVPEGSQRYMRFLAGDLIR 116
+D + DQ+V E + +PE ++ R L D+IR
Sbjct: 423 RIYDADLPEYNVAIDVYGDQIVIQEYAAPKNIPE--EKAKRRLT-DIIR 468
>sp|A1KUC8|KCY_NEIMF Cytidylate kinase OS=Neisseria meningitidis serogroup C / serotype
2a (strain ATCC 700532 / FAM18) GN=cmk PE=3 SV=1
Length = 218
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 12 FFSVKKTSRDSRKLNNRNLPCHGIRAMRVEKPLEELYNVRVERQVSPERLKE------LD 65
F + + R R+ +PC G+ R+ +E R+V+P LK+ LD
Sbjct: 141 FLTAESKIRAERRAKQIGIPCEGLAFERILSDIEARDEADRNRKVAP--LKQQPDALLLD 198
Query: 66 VSRWSMWKTGKCKLPW 81
SR ++ +T K L W
Sbjct: 199 TSRLTIEETVKKVLDW 214
>sp|P57065|KCY_NEIMB Cytidylate kinase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=cmk PE=3 SV=1
Length = 218
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 12 FFSVKKTSRDSRKLNNRNLPCHGIRAMRVEKPLEELYNVRVERQVSPERLKE------LD 65
F + + R R+ +PC G+ R+ +E R+V+P LK+ LD
Sbjct: 141 FLTAESKIRAERRAKQIGIPCEGLAFERILSDIEARDEADRNRKVAP--LKQQPDALLLD 198
Query: 66 VSRWSMWKTGKCKLPW 81
SR ++ +T K L W
Sbjct: 199 TSRLTIEETVKKVLDW 214
>sp|P57064|KCY_NEIMA Cytidylate kinase OS=Neisseria meningitidis serogroup A / serotype
4A (strain Z2491) GN=cmk PE=3 SV=1
Length = 218
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 12 FFSVKKTSRDSRKLNNRNLPCHGIRAMRVEKPLEELYNVRVERQVSPERLKE------LD 65
F + + R R+ +PC G+ R+ +E R+V+P LK+ LD
Sbjct: 141 FLTAESKIRAERRAKQIGIPCEGLAFERILSDIEARDEADRNRKVAP--LKQQPDALLLD 198
Query: 66 VSRWSMWKTGKCKLPW 81
SR ++ +T K L W
Sbjct: 199 TSRLTIEETVKKVLDW 214
>sp|A1APF9|PYRG_PELPD CTP synthase OS=Pelobacter propionicus (strain DSM 2379) GN=pyrG
PE=3 SV=1
Length = 535
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 45 EELYNVRVERQVSPERLKELDVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEG 102
E +Y V + +S ERL E V + ++W PW V+ + + GEVR+ G
Sbjct: 242 EHIYYVPL--ALSKERLDERVVEKLNIWTKAPDLTPWQDVVETVCHPGHGEVRIAIVG 297
>sp|A9AY15|MIAA_HERA2 tRNA dimethylallyltransferase OS=Herpetosiphon aurantiacus (strain
ATCC 23779 / DSM 785) GN=miaA PE=3 SV=1
Length = 315
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 16 KKTSRDSRKLNNRNLPCHGIRAMRVEKPLEELYNVRVERQVSPERLKELDVSRWSMWKTG 75
+T + +L RN P + I + +E+P +ELY R++++V + L W++ + G
Sbjct: 173 HETGQPISQLQQRNPPHYRILTLDLERPRDELY-ARIDQRVDLMMREGLIAEVWALIRQG 231
Query: 76 KCKLPWDWQVDQLVYIEEGEVRVVPEGSQ 104
+ W++ + + E R + +G Q
Sbjct: 232 -----YGWELPSMSGLGYAEFRPLWQGQQ 255
>sp|Q7ZUS1|VRK1_DANRE Serine/threonine-protein kinase VRK1 OS=Danio rerio GN=vrk1 PE=2
SV=1
Length = 425
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 46 ELYNVRVERQVSPERLKELDVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVRV 98
E ++ + VSP R +L++ + M + +LPW+ ++ +Y+ + ++R
Sbjct: 227 EFTSIDAHKGVSPSRRADLEIMGYCMIQWLCSRLPWEDKLQDPLYVRDSKLRC 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,536,326
Number of Sequences: 539616
Number of extensions: 2418605
Number of successful extensions: 4414
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4413
Number of HSP's gapped (non-prelim): 7
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)