Query 032303
Match_columns 143
No_of_seqs 151 out of 494
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 12:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3450 Predicted enzyme of th 100.0 2.8E-30 6.1E-35 193.1 10.8 86 52-138 26-115 (116)
2 PF05899 Cupin_3: Protein of u 99.9 4E-27 8.7E-32 161.7 10.6 72 63-135 3-74 (74)
3 PF06249 EutQ: Ethanolamine ut 99.1 1.8E-09 3.9E-14 84.3 10.8 68 69-138 79-146 (152)
4 PRK15457 ethanolamine utilizat 98.9 1.3E-08 2.9E-13 84.3 9.7 67 69-137 159-225 (233)
5 COG4766 EutQ Ethanolamine util 98.7 7E-08 1.5E-12 76.3 8.0 65 70-136 103-167 (176)
6 COG3837 Uncharacterized conser 98.4 1.6E-06 3.6E-11 68.4 7.7 47 79-127 58-104 (161)
7 PF07883 Cupin_2: Cupin domain 98.3 1.3E-05 2.9E-10 51.9 10.3 59 70-130 1-62 (71)
8 COG0662 {ManC} Mannose-6-phosp 98.2 2.7E-06 5.8E-11 63.2 5.7 53 74-128 46-98 (127)
9 PRK13290 ectC L-ectoine syntha 98.1 1.8E-05 3.9E-10 59.5 7.7 50 85-135 55-105 (125)
10 PF00190 Cupin_1: Cupin; Inte 98.0 0.00015 3.1E-09 54.4 11.1 70 70-140 37-121 (144)
11 PRK13264 3-hydroxyanthranilate 97.9 1.5E-05 3.4E-10 63.8 5.0 51 75-126 42-97 (177)
12 COG1917 Uncharacterized conser 97.8 3.3E-05 7.2E-10 56.7 5.1 59 71-131 47-108 (131)
13 TIGR03037 anthran_nbaC 3-hydro 97.8 3.7E-05 8.1E-10 60.6 5.5 49 78-126 40-91 (159)
14 PF02311 AraC_binding: AraC-li 97.6 0.00059 1.3E-08 47.5 8.6 57 78-136 15-74 (136)
15 TIGR03404 bicupin_oxalic bicup 97.5 0.00019 4.1E-09 62.5 6.0 59 70-129 248-313 (367)
16 PRK09943 DNA-binding transcrip 97.5 0.00039 8.5E-09 54.1 7.2 46 83-130 126-171 (185)
17 smart00835 Cupin_1 Cupin. This 97.5 0.0012 2.6E-08 49.5 9.3 60 68-128 31-98 (146)
18 PF06865 DUF1255: Protein of u 97.4 0.0011 2.3E-08 48.5 7.7 58 74-131 30-87 (94)
19 PRK10579 hypothetical protein; 97.4 0.0011 2.5E-08 48.3 7.8 57 74-130 30-86 (94)
20 TIGR03214 ura-cupin putative a 97.3 0.0015 3.2E-08 54.2 8.5 57 70-128 61-121 (260)
21 TIGR03404 bicupin_oxalic bicup 97.2 0.0024 5.2E-08 55.7 8.7 49 80-129 83-134 (367)
22 PRK04190 glucose-6-phosphate i 97.1 0.0011 2.4E-08 53.3 5.9 39 85-124 97-139 (191)
23 PRK11171 hypothetical protein; 97.1 0.0022 4.7E-08 53.3 7.5 58 70-129 64-125 (266)
24 TIGR01479 GMP_PMI mannose-1-ph 97.0 0.0033 7.1E-08 56.0 8.0 57 72-130 381-440 (468)
25 PRK15460 cpsB mannose-1-phosph 96.9 0.0023 5E-08 57.7 6.4 49 80-130 401-449 (478)
26 COG4297 Uncharacterized protei 96.8 0.0025 5.4E-08 50.1 5.3 49 70-121 48-101 (163)
27 PF01050 MannoseP_isomer: Mann 96.7 0.0051 1.1E-07 47.8 6.0 46 80-127 79-124 (151)
28 PF12852 Cupin_6: Cupin 96.6 0.0036 7.7E-08 48.3 4.7 39 86-125 36-75 (186)
29 PF04209 HgmA: homogentisate 1 96.5 0.018 4E-07 51.6 8.9 70 69-141 127-199 (424)
30 PF03079 ARD: ARD/ARD' family; 96.3 0.025 5.4E-07 44.3 7.8 49 81-129 87-139 (157)
31 COG2140 Thermophilic glucose-6 96.3 0.0075 1.6E-07 49.6 5.0 52 71-122 84-143 (209)
32 PRK10296 DNA-binding transcrip 96.3 0.0086 1.9E-07 48.4 5.2 42 80-123 37-79 (278)
33 PRK05341 homogentisate 1,2-dio 96.2 0.023 5E-07 51.3 8.0 71 69-141 135-208 (438)
34 PRK11171 hypothetical protein; 96.2 0.022 4.7E-07 47.4 7.2 61 68-130 185-248 (266)
35 TIGR03214 ura-cupin putative a 96.1 0.012 2.6E-07 48.8 5.3 58 66-125 178-238 (260)
36 TIGR01015 hmgA homogentisate 1 96.0 0.03 6.5E-07 50.4 7.8 70 69-141 129-201 (429)
37 PF11699 CENP-C_C: Mif2/CENP-C 95.9 0.021 4.5E-07 40.6 5.1 54 67-122 12-68 (85)
38 PRK13500 transcriptional activ 95.9 0.027 5.9E-07 46.9 6.5 51 79-131 61-112 (312)
39 PRK13502 transcriptional activ 95.8 0.026 5.7E-07 45.6 6.1 50 79-130 31-81 (282)
40 PRK13501 transcriptional activ 95.8 0.015 3.2E-07 47.5 4.5 48 81-130 33-81 (290)
41 PLN00212 glutelin; Provisional 95.7 0.02 4.3E-07 52.2 5.4 44 80-123 364-411 (493)
42 PF12973 Cupin_7: ChrR Cupin-l 95.5 0.089 1.9E-06 36.5 7.1 48 77-130 35-83 (91)
43 PLN02658 homogentisate 1,2-dio 95.5 0.069 1.5E-06 48.2 8.1 71 69-141 128-201 (435)
44 PRK10371 DNA-binding transcrip 95.5 0.023 4.9E-07 47.5 4.8 51 80-132 40-91 (302)
45 PRK13503 transcriptional activ 95.4 0.025 5.5E-07 45.3 4.5 50 79-130 28-78 (278)
46 TIGR02272 gentisate_1_2 gentis 95.3 0.06 1.3E-06 46.9 6.9 44 85-130 270-313 (335)
47 COG3123 Uncharacterized protei 95.2 0.13 2.9E-06 37.4 7.3 58 74-131 30-87 (94)
48 TIGR02297 HpaA 4-hydroxyphenyl 95.1 0.052 1.1E-06 43.8 5.6 50 80-131 37-88 (287)
49 COG3508 HmgA Homogentisate 1,2 95.0 0.094 2E-06 46.8 7.2 64 76-141 137-200 (427)
50 PF06052 3-HAO: 3-hydroxyanthr 94.3 0.21 4.5E-06 39.4 6.9 44 79-122 46-92 (151)
51 PF06560 GPI: Glucose-6-phosph 94.0 0.065 1.4E-06 43.1 3.7 40 83-122 81-127 (182)
52 COG4101 Predicted mannose-6-ph 93.6 0.12 2.6E-06 40.0 4.2 37 86-122 68-105 (142)
53 TIGR00218 manA mannose-6-phosp 93.1 0.34 7.4E-06 40.7 6.7 39 85-125 253-292 (302)
54 PRK10572 DNA-binding transcrip 93.1 0.33 7.2E-06 39.4 6.4 40 85-126 49-88 (290)
55 KOG2107 Uncharacterized conser 92.8 0.27 5.9E-06 39.6 5.3 45 85-129 93-140 (179)
56 PLN00212 glutelin; Provisional 92.5 1.6 3.6E-05 40.0 10.6 82 56-138 70-183 (493)
57 TIGR02272 gentisate_1_2 gentis 92.2 0.27 5.9E-06 42.9 5.0 40 85-128 101-140 (335)
58 COG3257 GlxB Uncharacterized p 92.0 0.82 1.8E-05 38.6 7.4 40 85-126 83-122 (264)
59 PLN02288 mannose-6-phosphate i 91.8 0.27 5.8E-06 43.7 4.6 41 85-125 354-394 (394)
60 PRK15131 mannose-6-phosphate i 91.7 0.75 1.6E-05 40.6 7.4 51 70-122 324-374 (389)
61 COG1791 Uncharacterized conser 91.1 0.65 1.4E-05 37.6 5.7 49 81-129 90-142 (181)
62 PRK09685 DNA-binding transcrip 91.0 0.93 2E-05 36.8 6.7 65 68-134 46-118 (302)
63 PF14499 DUF4437: Domain of un 90.4 0.77 1.7E-05 38.7 5.9 51 72-130 47-97 (251)
64 PF06339 Ectoine_synth: Ectoin 90.4 1.7 3.7E-05 33.3 7.3 58 80-138 49-108 (126)
65 PF02678 Pirin: Pirin; InterP 90.4 1.5 3.3E-05 32.2 6.8 53 76-130 39-93 (107)
66 PF14525 AraC_binding_2: AraC- 89.9 1.5 3.3E-05 31.8 6.4 47 88-136 58-104 (172)
67 KOG2757 Mannose-6-phosphate is 88.3 1.2 2.5E-05 40.0 5.7 51 85-136 353-403 (411)
68 TIGR02451 anti_sig_ChrR anti-s 85.7 1.1 2.3E-05 36.4 3.8 56 68-129 128-185 (215)
69 PF13621 Cupin_8: Cupin-like d 85.7 0.64 1.4E-05 36.1 2.4 55 68-122 132-226 (251)
70 PRK15186 AraC family transcrip 85.7 1.6 3.5E-05 36.9 4.9 56 71-127 23-79 (291)
71 PF02041 Auxin_BP: Auxin bindi 85.1 5.6 0.00012 31.8 7.4 65 64-128 39-115 (167)
72 PF04622 ERG2_Sigma1R: ERG2 an 85.0 3.5 7.5E-05 34.1 6.5 44 85-128 119-162 (216)
73 PF05523 FdtA: WxcM-like, C-te 84.6 4.8 0.0001 30.1 6.6 47 80-126 49-98 (131)
74 PF11142 DUF2917: Protein of u 84.5 4.1 9E-05 27.1 5.6 52 72-124 2-55 (63)
75 PF05726 Pirin_C: Pirin C-term 81.9 8.5 0.00018 27.3 6.7 40 85-128 20-59 (104)
76 PF04962 KduI: KduI/IolB famil 81.0 7.3 0.00016 32.7 7.0 67 71-139 31-107 (261)
77 KOG0501 K+-channel KCNQ [Inorg 81.0 2.6 5.6E-05 40.4 4.7 45 70-115 572-618 (971)
78 COG3435 Gentisate 1,2-dioxygen 80.1 2.2 4.8E-05 37.5 3.7 35 85-120 112-146 (351)
79 COG1482 ManA Phosphomannose is 80.0 3.9 8.4E-05 35.6 5.2 59 68-130 243-302 (312)
80 COG3435 Gentisate 1,2-dioxygen 78.9 2.9 6.3E-05 36.8 4.0 36 85-122 281-316 (351)
81 PF00027 cNMP_binding: Cyclic 73.3 6.9 0.00015 25.0 3.9 31 85-115 17-51 (91)
82 PRK13918 CRP/FNR family transc 72.3 9.3 0.0002 28.9 4.9 32 86-117 27-62 (202)
83 PF06719 AraC_N: AraC-type tra 70.3 21 0.00047 27.0 6.5 44 85-130 23-66 (155)
84 PRK00924 5-keto-4-deoxyuronate 69.5 18 0.00039 31.0 6.5 57 81-139 69-129 (276)
85 PF08007 Cupin_4: Cupin superf 68.9 19 0.00042 30.5 6.6 53 69-122 116-193 (319)
86 PF05962 HutD: HutD; InterPro 68.4 39 0.00085 26.7 7.9 57 76-133 45-104 (184)
87 COG1741 Pirin-related protein 67.8 8.6 0.00019 32.8 4.2 51 75-127 52-105 (276)
88 smart00100 cNMP Cyclic nucleot 64.8 29 0.00064 22.4 5.6 48 72-119 20-73 (120)
89 PRK15044 transcriptional regul 62.7 14 0.00031 31.9 4.6 42 83-125 38-79 (295)
90 PF09313 DUF1971: Domain of un 61.4 23 0.0005 24.9 4.8 41 87-130 27-72 (82)
91 PF02373 JmjC: JmjC domain, hy 60.9 7.4 0.00016 26.9 2.2 15 107-121 83-97 (114)
92 PF05962 HutD: HutD; InterPro 60.9 8.7 0.00019 30.4 2.8 36 85-122 135-170 (184)
93 PRK11753 DNA-binding transcrip 60.0 59 0.0013 24.6 7.2 62 56-118 8-75 (211)
94 PF02408 CUB_2: CUB-like domai 59.4 7 0.00015 28.5 1.9 19 112-130 33-51 (120)
95 PRK10402 DNA-binding transcrip 59.1 19 0.00042 28.2 4.6 48 71-118 33-86 (226)
96 PRK11396 hypothetical protein; 58.1 62 0.0013 26.3 7.3 59 76-136 46-107 (191)
97 PRK09774 fec operon regulator 57.1 37 0.00081 28.7 6.2 42 78-120 183-227 (319)
98 TIGR03697 NtcA_cyano global ni 55.8 24 0.00052 26.3 4.4 32 85-116 11-46 (193)
99 COG3257 GlxB Uncharacterized p 54.1 20 0.00043 30.5 4.0 29 89-119 207-235 (264)
100 KOG1417 Homogentisate 1,2-diox 53.6 43 0.00093 29.9 6.1 70 70-142 137-209 (446)
101 cd00038 CAP_ED effector domain 52.1 36 0.00079 21.9 4.4 45 74-118 22-72 (115)
102 PRK15185 transcriptional regul 51.9 27 0.00057 30.4 4.5 40 85-126 49-88 (309)
103 COG3097 Uncharacterized protei 51.9 7.3 0.00016 28.9 0.9 38 90-128 15-56 (106)
104 PLN02868 acyl-CoA thioesterase 51.5 72 0.0016 27.8 7.2 63 54-117 17-84 (413)
105 KOG3416 Predicted nucleic acid 48.8 18 0.0004 28.0 2.8 19 108-126 61-79 (134)
106 cd00320 cpn10 Chaperonin 10 Kd 47.2 30 0.00066 24.5 3.5 18 107-125 56-73 (93)
107 KOG0500 Cyclic nucleotide-gate 46.4 53 0.0011 30.8 5.7 61 50-115 312-379 (536)
108 PRK09391 fixK transcriptional 44.4 48 0.001 26.1 4.7 36 85-120 56-95 (230)
109 PRK05467 Fe(II)-dependent oxyg 44.1 38 0.00083 27.9 4.2 37 94-133 130-166 (226)
110 COG3128 PiuC Uncharacterized i 43.7 26 0.00056 29.2 3.0 28 93-120 132-159 (229)
111 PTZ00414 10 kDa heat shock pro 43.4 93 0.002 22.8 5.7 28 93-121 46-75 (100)
112 KOG0498 K+-channel ERG and rel 43.3 52 0.0011 31.9 5.4 44 73-116 446-494 (727)
113 TIGR00686 phnA alkylphosphonat 43.0 18 0.00038 27.2 1.8 48 68-121 16-63 (109)
114 PF13759 2OG-FeII_Oxy_5: Putat 42.0 23 0.00049 24.7 2.2 17 106-122 67-83 (101)
115 smart00783 A_amylase_inhib Alp 41.1 81 0.0018 21.9 4.7 27 96-123 32-58 (69)
116 COG1482 ManA Phosphomannose is 40.8 21 0.00045 31.1 2.2 73 44-122 86-175 (312)
117 PRK04980 hypothetical protein; 40.3 30 0.00064 25.6 2.6 35 91-126 15-49 (102)
118 TIGR00218 manA mannose-6-phosp 39.8 17 0.00037 30.6 1.5 16 107-122 153-168 (302)
119 PF02080 TrkA_C: TrkA-C domain 39.1 55 0.0012 20.6 3.6 29 86-117 28-56 (71)
120 PF02237 BPL_C: Biotin protein 38.8 57 0.0012 20.1 3.4 21 94-115 26-46 (48)
121 PRK14533 groES co-chaperonin G 37.7 1.4E+02 0.003 21.4 5.7 31 92-124 36-68 (91)
122 PRK00364 groES co-chaperonin G 37.6 72 0.0016 22.7 4.3 17 107-124 57-73 (95)
123 PRK11161 fumarate/nitrate redu 36.0 74 0.0016 24.7 4.5 44 74-117 42-91 (235)
124 PRK15131 mannose-6-phosphate i 35.9 29 0.00064 30.7 2.4 16 106-121 238-253 (389)
125 COG3712 FecR Fe2+-dicitrate se 35.3 46 0.00099 29.2 3.5 41 77-118 185-228 (322)
126 PRK09978 DNA-binding transcrip 33.9 83 0.0018 26.7 4.7 36 91-130 12-47 (274)
127 cd06919 Asp_decarbox Aspartate 33.5 29 0.00063 26.1 1.7 54 57-118 28-87 (111)
128 TIGR02219 phage_NlpC_fam putat 32.1 23 0.0005 26.3 1.0 11 108-118 76-86 (134)
129 PRK10838 spr outer membrane li 32.0 23 0.0005 28.5 1.0 13 108-120 128-140 (190)
130 PF06172 Cupin_5: Cupin superf 31.2 2E+02 0.0044 21.9 6.1 39 84-122 60-108 (139)
131 PF10162 G8: G8 domain; Inter 31.1 74 0.0016 23.4 3.6 21 110-130 10-30 (125)
132 PRK02946 aceK bifunctional iso 30.9 25 0.00055 33.1 1.2 39 81-121 473-519 (575)
133 cd04715 BAH_Orc1p_like BAH, or 30.2 1.1E+02 0.0024 23.9 4.5 14 67-80 2-15 (159)
134 PRK09392 ftrB transcriptional 29.9 96 0.0021 24.1 4.2 32 85-116 48-82 (236)
135 COG2905 Predicted signal-trans 29.6 68 0.0015 30.5 3.8 33 85-117 48-80 (610)
136 TIGR00223 panD L-aspartate-alp 29.0 37 0.0008 26.1 1.6 55 57-119 29-89 (126)
137 PHA00663 hypothetical protein 28.7 54 0.0012 22.5 2.2 21 110-130 16-36 (68)
138 KOG3706 Uncharacterized conser 28.7 31 0.00067 32.4 1.4 52 78-129 330-405 (629)
139 PRK05449 aspartate alpha-decar 28.7 38 0.00083 26.0 1.7 54 57-118 29-88 (126)
140 COG5583 Uncharacterized small 28.4 76 0.0017 21.1 2.8 26 94-120 24-49 (54)
141 PF00166 Cpn10: Chaperonin 10 28.4 49 0.0011 23.2 2.1 17 107-123 56-72 (93)
142 COG4579 Isocitrate dehydrogena 28.4 32 0.0007 31.8 1.4 44 82-127 473-524 (578)
143 PF03983 SHD1: SLA1 homology d 28.1 1.8E+02 0.0038 20.1 4.8 37 69-109 12-48 (70)
144 PF14499 DUF4437: Domain of un 27.2 49 0.0011 27.9 2.2 44 85-128 191-243 (251)
145 PF01356 A_amylase_inhib: Alph 27.1 91 0.002 21.6 3.1 25 96-121 29-55 (68)
146 TIGR03027 pepcterm_export puta 26.2 47 0.001 25.3 1.8 15 107-121 150-164 (165)
147 PHA02872 EFc gene family prote 25.0 96 0.0021 23.7 3.2 49 85-133 60-118 (124)
148 COG0664 Crp cAMP-binding prote 24.1 1.3E+02 0.0028 22.0 3.8 53 69-121 23-81 (214)
149 PRK10220 hypothetical protein; 24.0 56 0.0012 24.7 1.8 48 68-121 17-64 (111)
150 COG3718 IolB Uncharacterized e 23.1 2.1E+02 0.0046 24.6 5.2 60 69-130 31-100 (270)
151 cd06462 Peptidase_S24_S26 The 22.6 1.4E+02 0.0029 19.0 3.3 10 109-118 29-38 (84)
152 PLN03192 Voltage-dependent pot 22.1 1.3E+02 0.0028 28.7 4.3 65 50-115 379-448 (823)
153 COG2501 S4-like RNA binding pr 22.0 36 0.00078 23.8 0.4 31 89-119 32-63 (73)
154 cd06552 ASCH_yqfb_like ASC-1 h 21.4 1.1E+02 0.0024 21.0 2.8 30 91-121 12-41 (100)
155 TIGR01221 rmlC dTDP-4-dehydror 21.3 2E+02 0.0044 22.7 4.6 62 76-137 53-131 (176)
156 PF00908 dTDP_sugar_isom: dTDP 21.3 1.8E+02 0.004 22.9 4.3 56 76-131 52-124 (176)
157 PF00877 NLPC_P60: NlpC/P60 fa 21.2 40 0.00086 23.3 0.5 12 108-119 51-62 (105)
158 cd03699 lepA_II lepA_II: This 21.0 1.3E+02 0.0027 20.3 3.0 16 107-122 58-73 (86)
159 PHA00672 hypothetical protein 21.0 2E+02 0.0044 22.5 4.4 38 87-126 68-105 (152)
160 TIGR02988 YaaA_near_RecF S4 do 21.0 48 0.001 21.0 0.8 12 107-118 48-59 (59)
161 smart00702 P4Hc Prolyl 4-hydro 20.9 1.6E+02 0.0035 22.0 3.9 32 107-138 141-174 (178)
162 PF00127 Copper-bind: Copper b 20.5 1.8E+02 0.0038 20.1 3.7 15 116-130 63-77 (99)
163 TIGR02656 cyanin_plasto plasto 20.1 1.7E+02 0.0036 20.3 3.5 16 115-130 62-77 (99)
No 1
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=99.97 E-value=2.8e-30 Score=193.12 Aligned_cols=86 Identities=21% Similarity=0.345 Sum_probs=79.5
Q ss_pred EecCCCHHHHhhc----CCCceeeeeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEE
Q 032303 52 VERQVSPERLKEL----DVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFF 127 (143)
Q Consensus 52 ve~~ps~~rl~~l----Gv~~wgiWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V 127 (143)
|+++|+......+ |....|+|+|+||+|++.|+.+|+||||+|+++||+|+|++ ++++|||+|+||+||+|+|+|
T Consensus 26 i~G~p~~~t~~~~~~~dg~~~~GiWe~TpG~~r~~y~~~E~chil~G~v~~T~d~Ge~-v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 26 ILGDPSAATWNLYGAPDGQVETGIWECTPGKFRVTYDEDEFCHILEGRVEVTPDGGEP-VEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred ccCCccceehheeeCCCCCeeEeEEEecCccceEEcccceEEEEEeeEEEEECCCCeE-EEEcCCCEEEECCCCeEEEEE
Confidence 7788877777655 34578999999999999999999999999999999999999 899999999999999999999
Q ss_pred ecceEEEEEEE
Q 032303 128 NGPYQERYSFR 138 (143)
Q Consensus 128 ~e~vrK~Y~~~ 138 (143)
++++||+|+++
T Consensus 105 ~EtvrK~Yv~~ 115 (116)
T COG3450 105 LETVRKHYVIR 115 (116)
T ss_pred eeeeEEEEEEe
Confidence 99999999986
No 2
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=99.95 E-value=4e-27 Score=161.65 Aligned_cols=72 Identities=28% Similarity=0.523 Sum_probs=68.6
Q ss_pred hcCCCceeeeeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEE
Q 032303 63 ELDVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERY 135 (143)
Q Consensus 63 ~lGv~~wgiWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y 135 (143)
..|..++|+|+|+||+|++.|+.+|+||||||+|+|++++|++ ++|+|||+|+||+|++|+|++++++||+|
T Consensus 3 ~~g~~~~g~w~~~pg~~~~~~~~~E~~~vleG~v~it~~~G~~-~~~~aGD~~~~p~G~~~~w~v~~~vrK~Y 74 (74)
T PF05899_consen 3 PDGVFSAGVWECTPGKFPWPYPEDEFFYVLEGEVTITDEDGET-VTFKAGDAFFLPKGWTGTWEVREPVRKVY 74 (74)
T ss_dssp CCTSEEEEEEEEECEEEEEEESSEEEEEEEEEEEEEEETTTEE-EEEETTEEEEE-TTEEEEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEECCceeEeeCCCCEEEEEEEeEEEEEECCCCE-EEEcCCcEEEECCCCEEEEEECeEEEEcC
Confidence 4578899999999999999999999999999999999999999 89999999999999999999999999998
No 3
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=99.07 E-value=1.8e-09 Score=84.34 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=55.2
Q ss_pred eeeeeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEEEE
Q 032303 69 WSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSFR 138 (143)
Q Consensus 69 wgiWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~~~ 138 (143)
.|.-+-+.+.|+|+|++||+-|||||+..|+.+ |+. +.-+|||+++||+|.+-+|......|=.|+.-
T Consensus 79 ~Gf~~le~~~f~wtl~YDEi~~VlEG~L~i~~~-G~~-~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~y 146 (152)
T PF06249_consen 79 AGFMELEKTSFPWTLTYDEIKYVLEGTLEISID-GQT-VTAKPGDVIFIPKGSTITFSTPDYARFFYVTY 146 (152)
T ss_dssp EEEEEEEEEEEEEE-SSEEEEEEEEEEEEEEET-TEE-EEEETT-EEEE-TT-EEEEEEEEEEEEEEEEE
T ss_pred eEEEEEeCCCccEEeecceEEEEEEeEEEEEEC-CEE-EEEcCCcEEEECCCCEEEEecCCCEEEEEEEC
Confidence 345555567899999999999999999999965 766 79999999999999999999999888888753
No 4
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.88 E-value=1.3e-08 Score=84.26 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=56.6
Q ss_pred eeeeeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEEE
Q 032303 69 WSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSF 137 (143)
Q Consensus 69 wgiWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~~ 137 (143)
.|.-.-+-.+|+|+++.+|+.|||||+.+++.+ |+. +.++|||.++||+|...+|......|-.|++
T Consensus 159 aGf~~~~~~sf~wtl~~dEi~YVLEGe~~l~Id-G~t-~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~ 225 (233)
T PRK15457 159 AGFMQWENAFFPWTLNYDEIDMVLEGELHVRHE-GET-MIAKAGDVMFIPKGSSIEFGTPSSVRFLYVA 225 (233)
T ss_pred eEEEEEecCccceeccceEEEEEEEeEEEEEEC-CEE-EEeCCCcEEEECCCCeEEecCCCCeeEEEEE
Confidence 344444568899999999999999999999995 666 7999999999999999999776666666665
No 5
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.70 E-value=7e-08 Score=76.29 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=56.6
Q ss_pred eeeeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEE
Q 032303 70 SMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYS 136 (143)
Q Consensus 70 giWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~ 136 (143)
|.=+-.+-.|+|+..+||+.|||||+..|..+|+. +.-+|||++++|||-+-+..+....|-.|+
T Consensus 103 G~m~~~~~tf~wtl~yDe~d~VlEGrL~V~~~g~t--v~a~aGDvifiPKgssIefst~gea~flyv 167 (176)
T COG4766 103 GLMEMKNTTFPWTLNYDEIDYVLEGRLHVRIDGRT--VIAGAGDVIFIPKGSSIEFSTTGEAKFLYV 167 (176)
T ss_pred ceeeeccccCcceecccceeEEEeeeEEEEEcCCe--EecCCCcEEEecCCCeEEEeccceEEEEEE
Confidence 34445568899999999999999999999999887 578999999999999999999888665555
No 6
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.37 E-value=1.6e-06 Score=68.38 Aligned_cols=47 Identities=28% Similarity=0.471 Sum_probs=39.5
Q ss_pred eeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEE
Q 032303 79 LPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFF 127 (143)
Q Consensus 79 f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V 127 (143)
+.|+-.+||++|||||+.++..++|+ +.++|||.+-||+|-..--++
T Consensus 58 ~H~Hs~edEfv~ILeGE~~l~~d~~e--~~lrpGD~~gFpAG~~~aHhl 104 (161)
T COG3837 58 RHWHSAEDEFVYILEGEGTLREDGGE--TRLRPGDSAGFPAGVGNAHHL 104 (161)
T ss_pred ccccccCceEEEEEcCceEEEECCee--EEecCCceeeccCCCcceeEE
Confidence 46677799999999999999999888 589999999999996433333
No 7
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.34 E-value=1.3e-05 Score=51.92 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=46.0
Q ss_pred eeeeecCcee-eeeec-c-ceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 70 SMWKTGKCKL-PWDWQ-V-DQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 70 giWec~pg~f-~~~y~-~-dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
|.|.-.||.- +++.+ . +|+.+||+|+++++. +|+. +++++||++++|+|..-.+.-...
T Consensus 1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~~-~~l~~Gd~~~i~~~~~H~~~n~~~ 62 (71)
T PF07883_consen 1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DGER-VELKPGDAIYIPPGVPHQVRNPGD 62 (71)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TTEE-EEEETTEEEEEETTSEEEEEEESS
T ss_pred CEEEECCCCCCCCEECCCCCEEEEEEECCEEEEE-ccEE-eEccCCEEEEECCCCeEEEEECCC
Confidence 4567778774 45554 3 499999999999995 5556 799999999999998877766554
No 8
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=2.7e-06 Score=63.18 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=41.9
Q ss_pred ecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEe
Q 032303 74 TGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFN 128 (143)
Q Consensus 74 c~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~ 128 (143)
.....++.+++.+|++|||||+++|+.+|.+ +++++||++++|+|..=.-+-.
T Consensus 46 g~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~--~~v~~gd~~~iP~g~~H~~~N~ 98 (127)
T COG0662 46 GEEISLHHHHHRDEHWYVLEGTGKVTIGGEE--VEVKAGDSVYIPAGTPHRVRNT 98 (127)
T ss_pred CcccCcccccCcceEEEEEeeEEEEEECCEE--EEecCCCEEEECCCCcEEEEcC
Confidence 3333556677789999999999999998544 7999999999999986544433
No 9
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.08 E-value=1.8e-05 Score=59.46 Aligned_cols=50 Identities=18% Similarity=0.025 Sum_probs=42.3
Q ss_pred cceEEEEEEeEEEEE-eCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEE
Q 032303 85 VDQLVYIEEGEVRVV-PEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERY 135 (143)
Q Consensus 85 ~dE~~yILEG~V~vt-~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y 135 (143)
..|++|||+|+++++ .++|+. +.++|||.++||++-.=.|.-.++++=.-
T Consensus 55 ~~E~~yVL~G~~~~~~i~~g~~-~~L~aGD~i~~~~~~~H~~~N~e~~~~l~ 105 (125)
T PRK13290 55 HLEAVYCIEGEGEVEDLATGEV-HPIRPGTMYALDKHDRHYLRAGEDMRLVC 105 (125)
T ss_pred CEEEEEEEeCEEEEEEcCCCEE-EEeCCCeEEEECCCCcEEEEcCCCEEEEE
Confidence 469999999999999 556777 79999999999999999998876655433
No 10
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=97.99 E-value=0.00015 Score=54.38 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=49.4
Q ss_pred eeeeecCcee---eeeeccceEEEEEEeEEEEEe--CCC------eeeEE--EcCCcEEEEcCCCEEEEEEe--cceEEE
Q 032303 70 SMWKTGKCKL---PWDWQVDQLVYIEEGEVRVVP--EGS------QRYMR--FLAGDLIRYPKWFEADLFFN--GPYQER 134 (143)
Q Consensus 70 giWec~pg~f---~~~y~~dE~~yILEG~V~vt~--d~G------~~~~e--~~AGDlv~fPkG~~gtW~V~--e~vrK~ 134 (143)
..=...||.+ .|+ +.+|++||++|+++++- .++ ..... +++||++++|+|+.-.|.-. .+....
T Consensus 37 ~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~ 115 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVL 115 (144)
T ss_dssp EEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEE
T ss_pred EeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEE
Confidence 3344478887 455 79999999999999532 332 22234 99999999999999888887 467777
Q ss_pred EEEEec
Q 032303 135 YSFRAY 140 (143)
Q Consensus 135 Y~~~a~ 140 (143)
+.|...
T Consensus 116 ~~f~~~ 121 (144)
T PF00190_consen 116 IIFDTN 121 (144)
T ss_dssp EEEEES
T ss_pred EEEECC
Confidence 777643
No 11
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.92 E-value=1.5e-05 Score=63.77 Aligned_cols=51 Identities=12% Similarity=0.300 Sum_probs=42.1
Q ss_pred cCc-eeeeeec-cceEEEEEEeEEEEEeC-CC--eeeEEEcCCcEEEEcCCCEEEEE
Q 032303 75 GKC-KLPWDWQ-VDQLVYIEEGEVRVVPE-GS--QRYMRFLAGDLIRYPKWFEADLF 126 (143)
Q Consensus 75 ~pg-~f~~~y~-~dE~~yILEG~V~vt~d-~G--~~~~e~~AGDlv~fPkG~~gtW~ 126 (143)
.|| +++||++ .+|++|+|+|+.+|... +| .. +.+++||++++|+|..=.+.
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~-v~L~eGd~fllP~gvpHsP~ 97 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRD-VPIREGEMFLLPPHVPHSPQ 97 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCceee-EEECCCCEEEeCCCCCcCCc
Confidence 566 5788885 69999999999999884 34 35 89999999999999876663
No 12
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.84 E-value=3.3e-05 Score=56.68 Aligned_cols=59 Identities=25% Similarity=0.307 Sum_probs=46.6
Q ss_pred eeeecCcee-eeeec--cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecce
Q 032303 71 MWKTGKCKL-PWDWQ--VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPY 131 (143)
Q Consensus 71 iWec~pg~f-~~~y~--~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~v 131 (143)
.+.-.||.. +|+.+ .+++.|+|+|+++++.+ |+. .++.+||.+++|+|-.=-+.-.+.-
T Consensus 47 ~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~-~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 47 LVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEK-KELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred EEEECCCcccccccCCCcceEEEEEecEEEEEec-CCc-eEecCCCEEEECCCCeeeeccCCCC
Confidence 455556553 67776 46999999999999999 776 7999999999999987666554443
No 13
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.82 E-value=3.7e-05 Score=60.62 Aligned_cols=49 Identities=12% Similarity=0.191 Sum_probs=38.8
Q ss_pred eeeeeec-cceEEEEEEeEEEEEeCC-Ce-eeEEEcCCcEEEEcCCCEEEEE
Q 032303 78 KLPWDWQ-VDQLVYIEEGEVRVVPEG-SQ-RYMRFLAGDLIRYPKWFEADLF 126 (143)
Q Consensus 78 ~f~~~y~-~dE~~yILEG~V~vt~d~-G~-~~~e~~AGDlv~fPkG~~gtW~ 126 (143)
+++||.+ .+|++|+|+|++.|...+ |+ ..+.+++||++++|+|..=.|.
T Consensus 40 R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~ 91 (159)
T TIGR03037 40 RTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQ 91 (159)
T ss_pred CcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccc
Confidence 4668875 799999999999995533 32 2389999999999999876654
No 14
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.62 E-value=0.00059 Score=47.52 Aligned_cols=57 Identities=19% Similarity=0.452 Sum_probs=40.7
Q ss_pred eeeeeec-cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEec--ceEEEEE
Q 032303 78 KLPWDWQ-VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNG--PYQERYS 136 (143)
Q Consensus 78 ~f~~~y~-~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e--~vrK~Y~ 136 (143)
.++++.. .-|++|+++|++++..++.. ..++|||++++|+|..=.+.... +.+..+.
T Consensus 15 ~~~~h~h~~~~i~~v~~G~~~~~~~~~~--~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 15 EFPPHWHDFYEIIYVLSGEGTLHIDGQE--YPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWI 74 (136)
T ss_dssp SEEEETT-SEEEEEEEEE-EEEEETTEE--EEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE
T ss_pred ccCCEECCCEEEEEEeCCEEEEEECCEE--EEEECCEEEEecCCccEEEecCCCCCEEEEEE
Confidence 3455544 68999999999999887665 69999999999999999999988 5555443
No 15
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=97.52 E-value=0.00019 Score=62.53 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=44.7
Q ss_pred eeeeecCcee---eeeeccceEEEEEEeEEEEEeCC----CeeeEEEcCCcEEEEcCCCEEEEEEec
Q 032303 70 SMWKTGKCKL---PWDWQVDQLVYIEEGEVRVVPEG----SQRYMRFLAGDLIRYPKWFEADLFFNG 129 (143)
Q Consensus 70 giWec~pg~f---~~~y~~dE~~yILEG~V~vt~d~----G~~~~e~~AGDlv~fPkG~~gtW~V~e 129 (143)
....-.||.. .||-..+|+.|||+|+++++..| ++. ..+++||+++||+|..=..+-.+
T Consensus 248 ~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~-~~l~~GD~~~iP~g~~H~i~N~G 313 (367)
T TIGR03404 248 AIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNART-FDYQAGDVGYVPRNMGHYVENTG 313 (367)
T ss_pred EEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEE-EEECCCCEEEECCCCeEEEEECC
Confidence 3455567765 34445799999999999998642 344 78999999999999887666544
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=97.52 E-value=0.00039 Score=54.06 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=39.8
Q ss_pred eccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 83 WQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 83 y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
...+|++|||+|+++++.++ +. ++++|||.+.||.+..=.|...+.
T Consensus 126 h~~~E~~~Vl~G~~~~~~~~-~~-~~l~~Gd~~~~~~~~~H~~~n~~~ 171 (185)
T PRK09943 126 HQGEEIGTVLEGEIVLTING-QD-YHLVAGQSYAINTGIPHSFSNTSA 171 (185)
T ss_pred cCCcEEEEEEEeEEEEEECC-EE-EEecCCCEEEEcCCCCeeeeCCCC
Confidence 34689999999999999865 55 799999999999999998988644
No 17
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=97.49 E-value=0.0012 Score=49.49 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=44.9
Q ss_pred ceeeeeecCcee-eeeec--cceEEEEEEeEEEEEeCCC---e--eeEEEcCCcEEEEcCCCEEEEEEe
Q 032303 68 RWSMWKTGKCKL-PWDWQ--VDQLVYIEEGEVRVVPEGS---Q--RYMRFLAGDLIRYPKWFEADLFFN 128 (143)
Q Consensus 68 ~wgiWec~pg~f-~~~y~--~dE~~yILEG~V~vt~d~G---~--~~~e~~AGDlv~fPkG~~gtW~V~ 128 (143)
....+...||.. +.+++ .+|++|||+|+.++...+. + . .++++||++.||+|..-.+.-.
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~-~~l~~GD~~~ip~g~~H~~~n~ 98 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYD-ARLREGDVFVVPQGHPHFQVNS 98 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEE-EEecCCCEEEECCCCEEEEEcC
Confidence 445666777664 45553 6899999999999987543 1 4 7899999999999987666553
No 18
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=97.41 E-value=0.0011 Score=48.48 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=45.0
Q ss_pred ecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecce
Q 032303 74 TGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPY 131 (143)
Q Consensus 74 c~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~v 131 (143)
..||.|.+.....|.+.|++|+..|.-.+...-.++.||+.|.+|++-+=.-++.+++
T Consensus 30 m~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~ 87 (94)
T PF06865_consen 30 MLPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPT 87 (94)
T ss_dssp E-SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-E
T ss_pred EeeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECcce
Confidence 3688888888899999999999999999876558899999999999988777776653
No 19
>PRK10579 hypothetical protein; Provisional
Probab=97.40 E-value=0.0011 Score=48.32 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=49.5
Q ss_pred ecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 74 TGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 74 c~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
-.||.|.+.....|.+.|++|+.+|.-.+.+...+|.||+.|.+|++-+=.-+|.+.
T Consensus 30 m~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~ 86 (94)
T PRK10579 30 MAEGEYTFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEP 86 (94)
T ss_pred EeeeEEEEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcc
Confidence 357888888889999999999999999987766799999999999998877777654
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=97.30 E-value=0.0015 Score=54.24 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=41.7
Q ss_pred eeeeecCcee-ee---eeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEe
Q 032303 70 SMWKTGKCKL-PW---DWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFN 128 (143)
Q Consensus 70 giWec~pg~f-~~---~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~ 128 (143)
-.++-.||.- .- +-..+|++|||+|+++|+.+ |+. .++++||.++||+|..=+|.-.
T Consensus 61 ~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~-g~~-~~L~~Gd~~y~pa~~~H~~~N~ 121 (260)
T TIGR03214 61 YIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE-GET-HELREGGYAYLPPGSKWTLANA 121 (260)
T ss_pred EEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC-CEE-EEECCCCEEEECCCCCEEEEEC
Confidence 4555566542 11 11247999999999999965 545 6999999999999998777543
No 21
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=97.16 E-value=0.0024 Score=55.74 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=39.4
Q ss_pred eeeeccceEEEEEEeEEEEEeCC--Ceee-EEEcCCcEEEEcCCCEEEEEEec
Q 032303 80 PWDWQVDQLVYIEEGEVRVVPEG--SQRY-MRFLAGDLIRYPKWFEADLFFNG 129 (143)
Q Consensus 80 ~~~y~~dE~~yILEG~V~vt~d~--G~~~-~e~~AGDlv~fPkG~~gtW~V~e 129 (143)
.|| ...|++|+|+|+++++..+ |+.+ ..+++||+++||+|..=.+.-..
T Consensus 83 HwH-~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~ 134 (367)
T TIGR03404 83 HWH-KEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLD 134 (367)
T ss_pred ccC-CCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECC
Confidence 455 4689999999999999853 5553 26999999999999988877653
No 22
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=97.13 E-value=0.0011 Score=53.31 Aligned_cols=39 Identities=10% Similarity=0.279 Sum_probs=32.0
Q ss_pred cceEEEEEEeEEEEEeCCC----eeeEEEcCCcEEEEcCCCEEE
Q 032303 85 VDQLVYIEEGEVRVVPEGS----QRYMRFLAGDLIRYPKWFEAD 124 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G----~~~~e~~AGDlv~fPkG~~gt 124 (143)
..|+.|+|+|++.+..++. .. .+++|||++++|+|+.=.
T Consensus 97 ~~EiyyvlsG~g~~~l~~~~G~~~~-~~v~pGd~v~IPpg~~H~ 139 (191)
T PRK04190 97 RAEIYYGLKGKGLMLLQDPEGEARW-IEMEPGTVVYVPPYWAHR 139 (191)
T ss_pred CCEEEEEEeCEEEEEEecCCCcEEE-EEECCCCEEEECCCCcEE
Confidence 3599999999999886543 24 789999999999998744
No 23
>PRK11171 hypothetical protein; Provisional
Probab=97.10 E-value=0.0022 Score=53.34 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=44.0
Q ss_pred eeeeecCcee---eeee-ccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEec
Q 032303 70 SMWKTGKCKL---PWDW-QVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNG 129 (143)
Q Consensus 70 giWec~pg~f---~~~y-~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e 129 (143)
-.++-.||.- +.+. ..+|++|||+|+++|+.+ |+. +.+.+||.+.||++..-.|.-..
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~-g~~-~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLE-GKT-HALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEEC-CEE-EEECCCCEEEECCCCCEEEEECC
Confidence 4566667642 2222 247999999999999985 555 79999999999999998887543
No 24
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.99 E-value=0.0033 Score=56.04 Aligned_cols=57 Identities=11% Similarity=-0.001 Sum_probs=45.6
Q ss_pred eeecCcee---eeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 72 WKTGKCKL---PWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 72 Wec~pg~f---~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
..-.||.- +++.+.+|++|||+|+++++.++. . ..+++||.++||+|..=.|.-.+.
T Consensus 381 ~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~-~-~~l~~GDsi~ip~~~~H~~~N~g~ 440 (468)
T TIGR01479 381 ITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE-T-LLLTENESTYIPLGVIHRLENPGK 440 (468)
T ss_pred EEECCCCccCccccCCCceEEEEEeeEEEEEECCE-E-EEecCCCEEEECCCCcEEEEcCCC
Confidence 44467763 244557899999999999998754 4 699999999999999999987544
No 25
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=96.90 E-value=0.0023 Score=57.72 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=41.7
Q ss_pred eeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 80 PWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 80 ~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
++|.+.+|+.|||+|+++++.+|- . .++.+||.+.||+|..=.|+-...
T Consensus 401 ~~H~~~~E~~~VlsG~~~v~idg~-~-~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 401 QMHHHRAEHWVVVAGTAKVTIDGD-I-KLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred CCCCCCceEEEEEeeEEEEEECCE-E-EEecCCCEEEECCCCcEEEEcCCC
Confidence 455567899999999999999754 4 799999999999999999987533
No 26
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=96.83 E-value=0.0025 Score=50.10 Aligned_cols=49 Identities=14% Similarity=0.389 Sum_probs=40.2
Q ss_pred eeeeecCceeee-eec--cceEEEEEEeEEEEEe--CCCeeeEEEcCCcEEEEcCCC
Q 032303 70 SMWKTGKCKLPW-DWQ--VDQLVYIEEGEVRVVP--EGSQRYMRFLAGDLIRYPKWF 121 (143)
Q Consensus 70 giWec~pg~f~~-~y~--~dE~~yILEG~V~vt~--d~G~~~~e~~AGDlv~fPkG~ 121 (143)
+.|.... |++ +|+ .+|+.-+|+|++.|.- +||.. +++++||.+++|+|.
T Consensus 48 gsW~g~V--f~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~e-l~v~~GDvlliPAGv 101 (163)
T COG4297 48 GSWRGGV--FNYHHYHSGAHEVLGVLRGQAGLQIGGADGQE-LEVGEGDVLLIPAGV 101 (163)
T ss_pred ccccccc--cccccccCCcceEEEEecceeEEEecCCCCce-eeecCCCEEEEecCc
Confidence 7887654 544 365 7999999999999876 45777 899999999999996
No 27
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=96.69 E-value=0.0051 Score=47.76 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=38.9
Q ss_pred eeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEE
Q 032303 80 PWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFF 127 (143)
Q Consensus 80 ~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V 127 (143)
..|+.-+|.-+||+|.+.|+.+|.. ..+.+||.+++|+|..-+-+-
T Consensus 79 q~H~~R~E~W~Vv~G~a~v~~~~~~--~~~~~g~sv~Ip~g~~H~i~n 124 (151)
T PF01050_consen 79 QYHHHRSEHWTVVSGTAEVTLDDEE--FTLKEGDSVYIPRGAKHRIEN 124 (151)
T ss_pred eeecccccEEEEEeCeEEEEECCEE--EEEcCCCEEEECCCCEEEEEC
Confidence 4555679999999999999986555 689999999999998877654
No 28
>PF12852 Cupin_6: Cupin
Probab=96.61 E-value=0.0036 Score=48.25 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=32.7
Q ss_pred ceEEEEEEeEEEEEeCC-CeeeEEEcCCcEEEEcCCCEEEE
Q 032303 86 DQLVYIEEGEVRVVPEG-SQRYMRFLAGDLIRYPKWFEADL 125 (143)
Q Consensus 86 dE~~yILEG~V~vt~d~-G~~~~e~~AGDlv~fPkG~~gtW 125 (143)
--+.+|++|++.+..++ +++ +++.+||+|++|.|..=.-
T Consensus 36 ~~fh~V~~G~~~l~~~~~~~~-~~L~~GDivllp~g~~H~l 75 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGGEP-IRLEAGDIVLLPRGTAHVL 75 (186)
T ss_pred eEEEEEECCeEEEEEcCCCCe-EEecCCCEEEEcCCCCeEe
Confidence 46789999999999665 666 8999999999999965443
No 29
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.47 E-value=0.018 Score=51.63 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=50.2
Q ss_pred eeeeeecCce---eeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEEEEecc
Q 032303 69 WSMWKTGKCK---LPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSFRAYG 141 (143)
Q Consensus 69 wgiWec~pg~---f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~~~a~~ 141 (143)
..+|.|..+- +=+.-+.||++++-+|+.+|..+=|. .++++||.++||+|.+=+++..++.| -|++-.+|
T Consensus 127 i~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G~--L~v~pGd~~VIPRG~~~rv~l~~p~r-gyi~E~~~ 199 (424)
T PF04209_consen 127 IHVYAANASMDDRAFRNADGDELIFPQQGSLRLETEFGR--LDVRPGDYVVIPRGTRFRVELPGPAR-GYIIENFG 199 (424)
T ss_dssp EEEEEE-S---SEEEEESSEEEEEEEEES-EEEEETTEE--EEE-TTEEEEE-TT--EEEE-SSSEE-EEEEEEES
T ss_pred EEEEEcCCCCCCcceEcCCCCEEEEEEECCEEEEecCee--EEEcCCeEEEECCeeEEEEEeCCCce-EEEEEcCC
Confidence 4578876543 33366789999999999999999998 79999999999999999999886654 58877766
No 30
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=96.31 E-value=0.025 Score=44.29 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=32.6
Q ss_pred eee-ccceEEEEEEeEEEEEeCC--Cee-eEEEcCCcEEEEcCCCEEEEEEec
Q 032303 81 WDW-QVDQLVYIEEGEVRVVPEG--SQR-YMRFLAGDLIRYPKWFEADLFFNG 129 (143)
Q Consensus 81 ~~y-~~dE~~yILEG~V~vt~d~--G~~-~~e~~AGDlv~fPkG~~gtW~V~e 129 (143)
-+. ..+|+.|||+|+..+...+ +.- -+.+++||++++|+|..=..+..+
T Consensus 87 EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~ 139 (157)
T PF03079_consen 87 EHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGE 139 (157)
T ss_dssp -EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred eEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCC
Confidence 344 4799999999999887643 332 168999999999999876555543
No 31
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=96.28 E-value=0.0075 Score=49.60 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=38.5
Q ss_pred eeeecCcee---eeeeccce--EEEEEEeEEEEEeCCCe---eeEEEcCCcEEEEcCCCE
Q 032303 71 MWKTGKCKL---PWDWQVDQ--LVYIEEGEVRVVPEGSQ---RYMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 71 iWec~pg~f---~~~y~~dE--~~yILEG~V~vt~d~G~---~~~e~~AGDlv~fPkG~~ 122 (143)
.-.-+||.. .||-..|| +.|+|+|+++.+..+.+ ....++|||.+++|+|+-
T Consensus 84 e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~g 143 (209)
T COG2140 84 EVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYG 143 (209)
T ss_pred EEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcc
Confidence 455677743 34433455 99999999999886643 457889999999999973
No 32
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.26 E-value=0.0086 Score=48.40 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=34.9
Q ss_pred eeee-ccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEE
Q 032303 80 PWDW-QVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEA 123 (143)
Q Consensus 80 ~~~y-~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~g 123 (143)
++++ +..|+.|+++|.+.+..++. . ..+.|||++++|+|-.=
T Consensus 37 ~~H~H~~~ei~~v~~G~~~~~i~~~-~-~~l~~g~l~~i~p~~~H 79 (278)
T PRK10296 37 GLHQHDYYEFTLVLTGRYYQEINGK-R-VLLERGDFVFIPLGSHH 79 (278)
T ss_pred CCcccccEEEEEEEeceEEEEECCE-E-EEECCCcEEEeCCCCcc
Confidence 4555 46899999999999998654 4 69999999999999744
No 33
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.20 E-value=0.023 Score=51.26 Aligned_cols=71 Identities=13% Similarity=0.268 Sum_probs=57.8
Q ss_pred eeeeeecCc---eeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEEEEecc
Q 032303 69 WSMWKTGKC---KLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSFRAYG 141 (143)
Q Consensus 69 wgiWec~pg---~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~~~a~~ 141 (143)
..++.|... .+-+.-+.||++++.+|+..|..+=|. .++++||.++||+|.+=++++.+.--+-|++..||
T Consensus 135 i~~y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~--L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g 208 (438)
T PRK05341 135 IHLYAANRSMQDRYFYNADGELLIVPQQGRLRLATELGV--LDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYG 208 (438)
T ss_pred EEEEeCCCCcccceeecCCCCEEEEEEeCCEEEEEeccc--eEecCCCEEEEcCccEEEEecCCCCeeEEEEEecC
Confidence 467777654 233456789999999999999999998 79999999999999998887756445678888777
No 34
>PRK11171 hypothetical protein; Provisional
Probab=96.16 E-value=0.022 Score=47.40 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=46.6
Q ss_pred ceeeeeecCce-eeee--eccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 68 RWSMWKTGKCK-LPWD--WQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 68 ~wgiWec~pg~-f~~~--y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
..-.++=.||. +.++ -...|..|||+|+.+++.+ |+. +++.|||.+.||.+-.-.+.-...
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~-~~~-~~l~~GD~i~~~~~~~h~~~N~g~ 248 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLN-NDW-VEVEAGDFIWMRAYCPQACYAGGP 248 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEEC-CEE-EEeCCCCEEEECCCCCEEEECCCC
Confidence 44456677885 3442 2367999999999999975 555 799999999999999888775433
No 35
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=96.07 E-value=0.012 Score=48.82 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=42.8
Q ss_pred CCceeeeeecCceee-e-ee-ccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEE
Q 032303 66 VSRWSMWKTGKCKLP-W-DW-QVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADL 125 (143)
Q Consensus 66 v~~wgiWec~pg~f~-~-~y-~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW 125 (143)
.....+-.=.||..- + +. ...|..|||+|+..+..+ |+. .+++|||.+++|+|-.=.-
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~-g~~-~~V~~GD~i~i~~~~~h~~ 238 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLD-NNW-VPVEAGDYIWMGAYCPQAC 238 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEEC-CEE-EEecCCCEEEECCCCCEEE
Confidence 345556666777753 2 22 356788999999999875 555 7999999999999987533
No 36
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.00 E-value=0.03 Score=50.38 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=57.2
Q ss_pred eeeeeecCc---eeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEEEEecc
Q 032303 69 WSMWKTGKC---KLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSFRAYG 141 (143)
Q Consensus 69 wgiWec~pg---~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~~~a~~ 141 (143)
..++.|..+ ++=+.-+.||++++-+|...|..+=|. .++++||.++||.|.+=+++..++.| -|++-.||
T Consensus 129 i~iy~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~--L~v~pgei~VIPRG~~frv~l~gp~r-gyi~E~~g 201 (429)
T TIGR01015 129 IHIYLCNASMENRAFYNADGDFLIVPQQGALLITTEFGR--LLVEPNEICVIPRGVRFRVTVLEPAR-GYICEVYG 201 (429)
T ss_pred EEEEeCCCCcccceeeccCCCEEEEEEeCcEEEEEeccc--eEecCCCEEEecCccEEEEeeCCCce-EEEEeccC
Confidence 467777654 233456789999999999999999998 79999999999999998888877655 57777766
No 37
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=95.89 E-value=0.021 Score=40.63 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=36.2
Q ss_pred CceeeeeecCceee---eeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCE
Q 032303 67 SRWSMWKTGKCKLP---WDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 67 ~~wgiWec~pg~f~---~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~ 122 (143)
..+|.=+=+|+... -..+..-++||++|.|.||-.+.+ ..+.+||.+.+|+|=.
T Consensus 12 fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~--f~v~~G~~F~VP~gN~ 68 (85)
T PF11699_consen 12 FASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETS--FVVTKGGSFQVPRGNY 68 (85)
T ss_dssp -EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEE--EEEETT-EEEE-TT-E
T ss_pred ceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcE--EEEeCCCEEEECCCCE
Confidence 34555555666542 234567899999999999997655 5799999999999853
No 38
>PRK13500 transcriptional activator RhaR; Provisional
Probab=95.86 E-value=0.027 Score=46.95 Aligned_cols=51 Identities=16% Similarity=0.014 Sum_probs=41.6
Q ss_pred eeeeec-cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecce
Q 032303 79 LPWDWQ-VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPY 131 (143)
Q Consensus 79 f~~~y~-~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~v 131 (143)
|+++++ ..|++|+++|.+.+..++.. ..+.+||++++|+|-.=.++..+.+
T Consensus 61 ~~~H~H~~~el~~v~~G~g~~~v~~~~--~~l~~Gdl~~I~~~~~H~~~~~~~~ 112 (312)
T PRK13500 61 FAEHTHDFCELVIVWRGNGLHVLNDRP--YRITRGDLFYIHADDKHSYASVNDL 112 (312)
T ss_pred CCccccceEEEEEEEcCeEEEEECCEE--EeecCCeEEEECCCCeecccccCCc
Confidence 455554 68999999999999987665 6999999999999998777765543
No 39
>PRK13502 transcriptional activator RhaR; Provisional
Probab=95.81 E-value=0.026 Score=45.59 Aligned_cols=50 Identities=16% Similarity=0.023 Sum_probs=39.7
Q ss_pred eeeee-ccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 79 LPWDW-QVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 79 f~~~y-~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
+++++ +.-|+.++++|.++++.++.. ..++|||++++|+|..=.+...+.
T Consensus 31 ~~~H~h~~~~l~~v~~G~~~~~i~~~~--~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 31 FAEHTHEFCELVMVWRGNGLHVLNERP--YRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCccccceEEEEEEecCcEEEEECCEE--EeecCCcEEEECCCCcccccccCC
Confidence 34454 367999999999999986554 699999999999998777765444
No 40
>PRK13501 transcriptional activator RhaR; Provisional
Probab=95.76 E-value=0.015 Score=47.52 Aligned_cols=48 Identities=15% Similarity=-0.023 Sum_probs=39.1
Q ss_pred eee-ccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 81 WDW-QVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 81 ~~y-~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
+++ +.-|+.|+++|++++..++. . ..+.+||++++|+|-.=.|+..+.
T Consensus 33 ~H~H~~~ei~~i~~G~~~~~i~~~-~-~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 33 EHTHQFCEIVIVWRGNGLHVLNDH-P-YRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred cccccceeEEEEecCceEEEECCe-e-eeecCCeEEEEcCCCcccccccCC
Confidence 344 57899999999999998654 4 699999999999999877765443
No 41
>PLN00212 glutelin; Provisional
Probab=95.69 E-value=0.02 Score=52.23 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=34.6
Q ss_pred eeeeccceEEEEEEeEEEEEeC--CCeeeE--EEcCCcEEEEcCCCEE
Q 032303 80 PWDWQVDQLVYIEEGEVRVVPE--GSQRYM--RFLAGDLIRYPKWFEA 123 (143)
Q Consensus 80 ~~~y~~dE~~yILEG~V~vt~d--~G~~~~--e~~AGDlv~fPkG~~g 123 (143)
.|+-.++|++|+++|++.|..- .|..+. ++.+||+++||+|+.-
T Consensus 364 Hwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v 411 (493)
T PLN00212 364 FWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAV 411 (493)
T ss_pred eecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeE
Confidence 3555689999999999887653 454423 7999999999999954
No 42
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=95.52 E-value=0.089 Score=36.53 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=35.7
Q ss_pred ceeeeee-ccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 77 CKLPWDW-QVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 77 g~f~~~y-~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
++++.+. ...|.+|||||+.. ++++ .+.+||.++.|+|..=+....+-
T Consensus 35 ~~~p~H~H~g~ee~~VLeG~~~--d~~~----~~~~G~~~~~p~g~~h~~~s~~g 83 (91)
T PF12973_consen 35 ASLPRHRHPGGEEILVLEGELS--DGDG----RYGAGDWLRLPPGSSHTPRSDEG 83 (91)
T ss_dssp EEEEEEEESS-EEEEEEECEEE--ETTC----EEETTEEEEE-TTEEEEEEESSC
T ss_pred CCcCccCCCCcEEEEEEEEEEE--ECCc----cCCCCeEEEeCCCCccccCcCCC
Confidence 3567765 46899999999987 3343 36999999999999988876554
No 43
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.52 E-value=0.069 Score=48.19 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=56.7
Q ss_pred eeeeeecCce---eeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEEEEecc
Q 032303 69 WSMWKTGKCK---LPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSFRAYG 141 (143)
Q Consensus 69 wgiWec~pg~---f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~~~a~~ 141 (143)
..++.|..+- +=+.-+.||++++-+|...|..+=|. .++++||.++||.|.+=+.++.+.--+-|++-.||
T Consensus 128 i~iy~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~--L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g 201 (435)
T PLN02658 128 IHMYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTELGK--LQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFG 201 (435)
T ss_pred EEEEeCCCCCccceeecCCCCEEEEEEeCCEEEEEeccc--eEecCCCEEEecCccEEEEecCCCCeeEEEEeecC
Confidence 4777887642 33456789999999999999999998 79999999999999986666645445578887775
No 44
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=95.51 E-value=0.023 Score=47.45 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=40.4
Q ss_pred eeeec-cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceE
Q 032303 80 PWDWQ-VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQ 132 (143)
Q Consensus 80 ~~~y~-~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vr 132 (143)
+||++ .-|+.|+++|++.+..+|.. ..+.+||+++++.|..=.+...+..+
T Consensus 40 ~~HwH~e~Ei~yv~~G~~~~~i~g~~--~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 40 TSHWHGQVEVNVPFDGDVEYLINNEK--VQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred CCCccccEEEEEecCCcEEEEECCEE--EEEcCCcEEEEecCCcccccccCCCc
Confidence 46665 57999999999999986554 68999999999999776655555544
No 45
>PRK13503 transcriptional activator RhaS; Provisional
Probab=95.39 E-value=0.025 Score=45.28 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=40.1
Q ss_pred eeeeec-cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 79 LPWDWQ-VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 79 f~~~y~-~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
++++++ .-|+.|+++|.+++..++.. ..+.+||++++|+|-.=.|+..+.
T Consensus 28 ~~~H~H~~~ei~~v~~G~~~~~i~~~~--~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 28 FPEHHHDFHEIVIVEHGTGIHVFNGQP--YTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred ccccccCceeEEEEecCceeeEecCCc--ccccCCcEEEECCCccchhhhccC
Confidence 345554 68999999999999988775 689999999999987666655443
No 46
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=95.31 E-value=0.06 Score=46.89 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=36.7
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
...++||+||+...+.++. . +++++||+|++|.+..-++.-.+.
T Consensus 270 ~s~Vf~VieG~G~s~ig~~-~-~~W~~gD~f~vPsW~~~~h~a~~d 313 (335)
T TIGR02272 270 DATVFCVVEGRGQVRIGDA-V-FRFSPKDVFVVPSWHPVRFEASDD 313 (335)
T ss_pred ccEEEEEEeCeEEEEECCE-E-EEecCCCEEEECCCCcEecccCCC
Confidence 4789999999999998655 4 899999999999997777765544
No 47
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.25 E-value=0.13 Score=37.36 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=50.5
Q ss_pred ecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecce
Q 032303 74 TGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPY 131 (143)
Q Consensus 74 c~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~v 131 (143)
..||.+.+-...-|.++++.|..++.-++...-.++.||..|-+|.+.+=...|.++.
T Consensus 30 m~~geytFgTa~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat 87 (94)
T COG3123 30 MAPGEYTFGTAAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEAT 87 (94)
T ss_pred EeceeEEeccCCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeee
Confidence 4678887777789999999999999998887778999999999999998888887663
No 48
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=95.12 E-value=0.052 Score=43.75 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=39.9
Q ss_pred eeeec--cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecce
Q 032303 80 PWDWQ--VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPY 131 (143)
Q Consensus 80 ~~~y~--~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~v 131 (143)
+++++ .-|++++++|++.+..++. . ..+.+||++++|+|..=.+......
T Consensus 37 ~~H~H~~~~~l~~~~~G~~~~~~~~~-~-~~l~~g~~~ii~~~~~H~~~~~~~~ 88 (287)
T TIGR02297 37 PVHFHDRYYQLHYLTEGSIALQLDEH-E-YSEYAPCFFLTPPSVPHGFVTDLDA 88 (287)
T ss_pred CCcccccceeEEEEeeCceEEEECCE-E-EEecCCeEEEeCCCCccccccCCCc
Confidence 44555 3699999999999988654 5 7999999999999987777665543
No 49
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.01 E-value=0.094 Score=46.76 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=54.4
Q ss_pred CceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEEEEecc
Q 032303 76 KCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSFRAYG 141 (143)
Q Consensus 76 pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~~~a~~ 141 (143)
+..|-+..+.+|+.++-.|+.++..+=|. +++++||..+||.|++=+-+..+.---.|...-||
T Consensus 137 ~~~~f~NADge~Livpq~G~l~l~te~G~--l~v~pgeiavIPRG~~frve~~~~~~rgy~~En~g 200 (427)
T COG3508 137 TKRFFRNADGELLIVPQQGELRLKTELGV--LEVEPGEIAVIPRGTTFRVELKDGEARGYGCENYG 200 (427)
T ss_pred hhhhhhcCCCCEEEEeecceEEEEEeece--EEecCCcEEEeeCCceEEEEecCCceEEEEEeecc
Confidence 34455567789999999999999999998 79999999999999999988877776677777666
No 50
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=94.32 E-value=0.21 Score=39.41 Aligned_cols=44 Identities=11% Similarity=0.308 Sum_probs=29.1
Q ss_pred eeeeec-cceEEEEEEeEEEEEe--CCCeeeEEEcCCcEEEEcCCCE
Q 032303 79 LPWDWQ-VDQLVYIEEGEVRVVP--EGSQRYMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 79 f~~~y~-~dE~~yILEG~V~vt~--d~G~~~~e~~AGDlv~fPkG~~ 122 (143)
-+||++ ..|++|-++|.+.|.. ++...-+.|++||.+.+|++..
T Consensus 46 ~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vp 92 (151)
T PF06052_consen 46 TDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVP 92 (151)
T ss_dssp SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--
T ss_pred CccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCC
Confidence 357776 5899999999887654 4444458999999999999864
No 51
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=94.03 E-value=0.065 Score=43.08 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=27.7
Q ss_pred eccceEEEEEEeEEEEEeC--CC----ee-eEEEcCCcEEEEcCCCE
Q 032303 83 WQVDQLVYIEEGEVRVVPE--GS----QR-YMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 83 y~~dE~~yILEG~V~vt~d--~G----~~-~~e~~AGDlv~fPkG~~ 122 (143)
.+..|+.++|+|++.+--. +| +. .++.+|||+|.+|.||-
T Consensus 81 ~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~ya 127 (182)
T PF06560_consen 81 LSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYA 127 (182)
T ss_dssp TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-E
T ss_pred CCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCce
Confidence 5578999999999988754 34 21 37899999999999984
No 52
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.58 E-value=0.12 Score=39.96 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=28.9
Q ss_pred ceEEEEEEeEEEEEeCCC-eeeEEEcCCcEEEEcCCCE
Q 032303 86 DQLVYIEEGEVRVVPEGS-QRYMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 86 dE~~yILEG~V~vt~d~G-~~~~e~~AGDlv~fPkG~~ 122 (143)
.-.+|+|+|++..--.+- +...+.+|||.+.+|+|..
T Consensus 68 EtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVP 105 (142)
T COG4101 68 ETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVP 105 (142)
T ss_pred cEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCC
Confidence 446899999999876442 3347899999999999963
No 53
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=93.13 E-value=0.34 Score=40.75 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=30.8
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCC-EEEE
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWF-EADL 125 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~-~gtW 125 (143)
.-.++.+++|+++|.. ++.. .++++|+.|++|++. ..+-
T Consensus 253 ~~~il~v~~G~~~i~~-~~~~-~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 253 SALILSVLEGSGRIKS-GGKT-LPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CcEEEEEEcceEEEEE-CCEE-EEEecccEEEEccCCccEEE
Confidence 3467889999999987 4444 799999999999987 3444
No 54
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=93.07 E-value=0.33 Score=39.39 Aligned_cols=40 Identities=18% Similarity=0.085 Sum_probs=32.6
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEE
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLF 126 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~ 126 (143)
.-++.++++|+..+..+++ . ..+++||++++|+|..-.+.
T Consensus 49 ~~~i~~~~~G~~~~~~~~~-~-~~~~~g~~i~i~p~~~h~~~ 88 (290)
T PRK10572 49 GYILNLTIRGQGVIFNGGR-A-FVCRPGDLLLFPPGEIHHYG 88 (290)
T ss_pred ceEEEEEEeccEEEecCCe-e-EecCCCCEEEECCCCceeec
Confidence 4578899999999986555 4 79999999999999875443
No 55
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=92.82 E-value=0.27 Score=39.60 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=35.6
Q ss_pred cceEEEEEEeEEEEEeCCCee---eEEEcCCcEEEEcCCCEEEEEEec
Q 032303 85 VDQLVYIEEGEVRVVPEGSQR---YMRFLAGDLIRYPKWFEADLFFNG 129 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~---~~e~~AGDlv~fPkG~~gtW~V~e 129 (143)
.+|+-|||+|..-+-..+-.. .+-+..||++++|+|.-=+.++..
T Consensus 93 deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 93 DEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred hhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence 579999999999877665321 367899999999999877776643
No 56
>PLN00212 glutelin; Provisional
Probab=92.49 E-value=1.6 Score=39.96 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=53.1
Q ss_pred CCHHHHhhcCCCceeeeeecCcee--eeeeccceEEEEEEeEEEEEeCC-C-e--------------------------e
Q 032303 56 VSPERLKELDVSRWSMWKTGKCKL--PWDWQVDQLVYIEEGEVRVVPEG-S-Q--------------------------R 105 (143)
Q Consensus 56 ps~~rl~~lGv~~wgiWec~pg~f--~~~y~~dE~~yILEG~V~vt~d~-G-~--------------------------~ 105 (143)
+....|.-.|++ --.-.-.|+.+ |.+.+..+++||++|+..+..-. | . .
T Consensus 70 ~~~~q~~caGv~-~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqk 148 (493)
T PLN00212 70 EKNEQFQCTGVF-VIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQK 148 (493)
T ss_pred CCChhhcccceE-EEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccccccccccccc
Confidence 334455545664 33344467776 43446899999999999876532 1 0 1
Q ss_pred eEEEcCCcEEEEcCCCEEEEEEecc--eEEEEEEE
Q 032303 106 YMRFLAGDLIRYPKWFEADLFFNGP--YQERYSFR 138 (143)
Q Consensus 106 ~~e~~AGDlv~fPkG~~gtW~V~e~--vrK~Y~~~ 138 (143)
...|+.||++.||+|..-=|.-... +..++.++
T Consensus 149 v~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d 183 (493)
T PLN00212 149 IHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYD 183 (493)
T ss_pred ceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEe
Confidence 1489999999999998765555433 55555554
No 57
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=92.16 E-value=0.27 Score=42.88 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=33.6
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEe
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFN 128 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~ 128 (143)
..-+.+|+||+...|.-||+. +.+++||+|+.|.| .|+-+
T Consensus 101 ~sAl~~vveG~G~~t~V~g~~-~~~~~gD~~~tP~w---~wH~H 140 (335)
T TIGR02272 101 QSALRFIVEGKGAFTAVDGER-TTMHPGDFIITPSW---TWHDH 140 (335)
T ss_pred cceEEEEEEcCceEEEECCEE-EeeeCCCEEEeCCC---eeEec
Confidence 568889999998766668888 89999999999997 56554
No 58
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=91.95 E-value=0.82 Score=38.62 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=32.8
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEE
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLF 126 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~ 126 (143)
.+-+.+|+||+++++.++. . ..+.+|+-+++|+|..=+..
T Consensus 83 ae~~lfVv~Ge~tv~~~G~-t-h~l~eggyaylPpgs~~~~~ 122 (264)
T COG3257 83 AETFLFVVSGEITVKAEGK-T-HALREGGYAYLPPGSGWTLR 122 (264)
T ss_pred ceEEEEEEeeeEEEEEcCe-E-EEeccCCeEEeCCCCcceEe
Confidence 4568899999999998654 4 79999999999999764444
No 59
>PLN02288 mannose-6-phosphate isomerase
Probab=91.81 E-value=0.27 Score=43.68 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=33.4
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEE
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADL 125 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW 125 (143)
.-+++.+++|+++|...+++...++++|++|++|++....|
T Consensus 354 gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~~~~ 394 (394)
T PLN02288 354 GPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEIHV 394 (394)
T ss_pred CCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCcccC
Confidence 45899999999999876665225699999999999887654
No 60
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.75 E-value=0.75 Score=40.63 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=35.4
Q ss_pred eeeeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCE
Q 032303 70 SMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 70 giWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~ 122 (143)
..+..+.+......+.-++..+++|+++|.. +|.. ..+++|+.|++|++..
T Consensus 324 ~~~~l~~~~~~~~~~~~~Illv~~G~~~i~~-~~~~-~~l~~G~~~fipa~~~ 374 (389)
T PRK15131 324 SLHDLSDQPTTLSQQSAAILFCVEGEAVLWK-GEQQ-LTLKPGESAFIAANES 374 (389)
T ss_pred EEEEECCceEEecCCCcEEEEEEcceEEEEe-CCeE-EEECCCCEEEEeCCCc
Confidence 3444433333333334478899999999986 4555 7899999999999854
No 61
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=91.11 E-value=0.65 Score=37.57 Aligned_cols=49 Identities=20% Similarity=0.155 Sum_probs=36.1
Q ss_pred eeec-cceEEEEEEeEEEEEe--CCCee-eEEEcCCcEEEEcCCCEEEEEEec
Q 032303 81 WDWQ-VDQLVYIEEGEVRVVP--EGSQR-YMRFLAGDLIRYPKWFEADLFFNG 129 (143)
Q Consensus 81 ~~y~-~dE~~yILEG~V~vt~--d~G~~-~~e~~AGDlv~fPkG~~gtW~V~e 129 (143)
-+.+ .+|+-|+|+|+..+.. .||.. -+...+||++.+|+|..=-.+..+
T Consensus 90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~ 142 (181)
T COG1791 90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTE 142 (181)
T ss_pred HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccC
Confidence 3443 7999999999987765 45543 267889999999999885444433
No 62
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=91.01 E-value=0.93 Score=36.84 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=45.0
Q ss_pred ceeeeeecCceeeee-----eccce---EEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEE
Q 032303 68 RWSMWKTGKCKLPWD-----WQVDQ---LVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQER 134 (143)
Q Consensus 68 ~wgiWec~pg~f~~~-----y~~dE---~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~ 134 (143)
.-..+.+++..+... -+.+| ++++++|.+.+..++.+ ..+.|||++++|.+-...++..+.....
T Consensus 46 ~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g~~--~~l~~G~~~l~~~~~p~~~~~~~~~~~~ 118 (302)
T PRK09685 46 KLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDDRQ--VQLAAGDITLIDASRPCSIYPQGLSEQI 118 (302)
T ss_pred EEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECCeE--EEEcCCCEEEEECCCCcEeecCCCceeE
Confidence 334566666655432 11223 45568999999876554 6899999999999988888776666543
No 63
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=90.44 E-value=0.77 Score=38.68 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=29.0
Q ss_pred eeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 72 WKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 72 Wec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
|+..|+-+ ..++-++||+|.+..-+.+.+. +.+.||..+++|+| .+++...
T Consensus 47 ~~~pph~H----~~~~~~~Vi~G~~~~~~~~a~~-~~l~~Gsy~~~PaG---~~h~~~~ 97 (251)
T PF14499_consen 47 FSSPPHIH----NADYRGTVISGELHNGDPKAAA-MWLPAGSYWFQPAG---EPHITAA 97 (251)
T ss_dssp -EE--BEE----SS-EEEEEEESEEEETTEE------E-TTEEEEE-TT----EEEETT
T ss_pred ccCCCcce----eeeEEEEEEEeEEEcCCCcccc-eecCCCceEeccCC---Cceeeec
Confidence 66666443 3578899999987664322233 67999999999999 6666655
No 64
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=90.43 E-value=1.7 Score=33.33 Aligned_cols=58 Identities=17% Similarity=0.069 Sum_probs=47.6
Q ss_pred eeeecc-ceEEEEEEeEEEEEeC-CCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEEEE
Q 032303 80 PWDWQV-DQLVYIEEGEVRVVPE-GSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSFR 138 (143)
Q Consensus 80 ~~~y~~-dE~~yILEG~V~vt~d-~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~~~ 138 (143)
+.+|.. -|-||.++|+.+|.+- +|+. ..|+||.+..+-+--+=...-.+.++-.=+|+
T Consensus 49 ~~~YknHlEAvyci~G~Gev~~~~~G~~-~~i~pGt~YaLd~hD~H~lra~~dm~~vCVFn 108 (126)
T PF06339_consen 49 HIHYKNHLEAVYCIEGEGEVEDLDTGEV-HPIKPGTMYALDKHDRHYLRAKTDMRLVCVFN 108 (126)
T ss_pred EEEecCceEEEEEEeceEEEEEccCCcE-EEcCCCeEEecCCCccEEEEecCCEEEEEEcC
Confidence 455654 6999999999999997 6777 89999999999998887777777777766664
No 65
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=90.38 E-value=1.5 Score=32.19 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=42.5
Q ss_pred Cceeeeeec--cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 76 KCKLPWDWQ--VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 76 pg~f~~~y~--~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
...|+.+-. .+=+-|+++|+++=.+.-|+. ..++|||+=.+-+| +|.|+-..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~-~~l~~G~vq~m~AG-~Gi~H~E~~ 93 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHRDSLGNR-GVLRAGDVQWMTAG-SGIVHSERN 93 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEEETTSEE-EEEETTEEEEEE-T-TTEEEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEECCCCCe-eEeCCCeEEEEeCC-CCceEEEec
Confidence 456777643 566789999999999998998 79999999999999 688886544
No 66
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=89.85 E-value=1.5 Score=31.83 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=38.2
Q ss_pred EEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEE
Q 032303 88 LVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYS 136 (143)
Q Consensus 88 ~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~ 136 (143)
++..++|.+.+.-. |.. .++.|||+++++.+-.-+-+..+..++...
T Consensus 58 l~~~~~G~~~~~~~-g~~-~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l 104 (172)
T PF14525_consen 58 LVLPLSGSARIEQG-GRE-VELAPGDVVLLDPGQPYRLEFSAGCRQLSL 104 (172)
T ss_pred EEEEccCCEEEEEC-CEE-EEEcCCeEEEEcCCCCEEEEECCCccEEEE
Confidence 45667999999975 444 799999999999999988888777777544
No 67
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.32 E-value=1.2 Score=39.99 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=41.9
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEE
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYS 136 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~ 136 (143)
.--+..+++|++++..+.+.+ ..+..||.+++|+...-+.......-+.|.
T Consensus 353 ~~SIllv~~G~g~l~~~t~~~-~~v~rG~V~fI~a~~~i~~~~~sd~~~~yr 403 (411)
T KOG2757|consen 353 GPSILLVLKGSGILKTDTDSK-ILVNRGDVLFIPANHPIHLSSSSDPFLGYR 403 (411)
T ss_pred CceEEEEEecceEEecCCCCc-eeeccCcEEEEcCCCCceeeccCcceeeee
Confidence 456778999999999984555 799999999999999998887777655554
No 68
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=85.74 E-value=1.1 Score=36.36 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=40.3
Q ss_pred ceeeeeecCce-eeeeec-cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEec
Q 032303 68 RWSMWKTGKCK-LPWDWQ-VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNG 129 (143)
Q Consensus 68 ~wgiWec~pg~-f~~~y~-~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e 129 (143)
....|.-.||. ++.+.+ ..|+.+||+|+. .+++| .+.+||.+..|.|..=.+...+
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f--~de~g----~y~~Gd~i~~p~~~~H~p~a~~ 185 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAF--SDETG----VYGVGDFEEADGSVQHQPRTVS 185 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEE--EcCCC----ccCCCeEEECCCCCCcCcccCC
Confidence 34567777764 455544 689999999995 44333 4799999999999876666553
No 69
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=85.71 E-value=0.64 Score=36.13 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=35.5
Q ss_pred ceeeeeecCcee-eeeec-cceEEEEEEeEEEEE-------------eC-------------C------------CeeeE
Q 032303 68 RWSMWKTGKCKL-PWDWQ-VDQLVYIEEGEVRVV-------------PE-------------G------------SQRYM 107 (143)
Q Consensus 68 ~wgiWec~pg~f-~~~y~-~dE~~yILEG~V~vt-------------~d-------------~------------G~~~~ 107 (143)
...+|=+.+|.. ++||| .+=+..+|.|+=+++ +. + ..-.+
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~ 211 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEV 211 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEE
T ss_pred ccEEEEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEE
Confidence 457898888876 67887 567778889986665 10 0 01147
Q ss_pred EEcCCcEEEEcCCCE
Q 032303 108 RFLAGDLIRYPKWFE 122 (143)
Q Consensus 108 e~~AGDlv~fPkG~~ 122 (143)
+++|||+++||+||-
T Consensus 212 ~l~pGD~LfiP~gWw 226 (251)
T PF13621_consen 212 VLEPGDVLFIPPGWW 226 (251)
T ss_dssp EEETT-EEEE-TT-E
T ss_pred EECCCeEEEECCCCe
Confidence 899999999999984
No 70
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=85.65 E-value=1.6 Score=36.94 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=43.7
Q ss_pred eeeecCceeeee-eccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEE
Q 032303 71 MWKTGKCKLPWD-WQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFF 127 (143)
Q Consensus 71 iWec~pg~f~~~-y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V 127 (143)
+|......+.-. ...-=+|++..|.++|..++|+. ..+.++.++++|++..-+-..
T Consensus 23 ~~~~~~~~~~~~~~~~~~li~v~~G~~~i~~~~g~~-l~i~~p~~~~~p~~~~~~~~~ 79 (291)
T PRK15186 23 NWQRKSLSLQGLNLLQSVLIKLTTGKISITTSSGEY-ITASGPMLIFLAKDQTIHITM 79 (291)
T ss_pred hhcCCceEEEeeeecceEEEEeccceEEEEeCCCce-EEeCCCeEEEEeCCcEEEEEe
Confidence 455555555433 33567999999999999999987 899999999999999886543
No 71
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=85.07 E-value=5.6 Score=31.80 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=36.0
Q ss_pred cCCCceeeeeec--Ccee-eeeec-cceEEEEEEeEEEEEeCCC------e-eeEEEcCCcEEEEcCCCE-EEEEEe
Q 032303 64 LDVSRWSMWKTG--KCKL-PWDWQ-VDQLVYIEEGEVRVVPEGS------Q-RYMRFLAGDLIRYPKWFE-ADLFFN 128 (143)
Q Consensus 64 lGv~~wgiWec~--pg~f-~~~y~-~dE~~yILEG~V~vt~d~G------~-~~~e~~AGDlv~fPkG~~-gtW~V~ 128 (143)
.|.....+|--+ ||+- +.+-+ -.|+++||+|+.++.-... + +..++.+++.+.||.+-. -.|...
T Consensus 39 hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 39 HGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp H--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred cCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 366666788764 6664 44544 6899999999999987642 1 237899999999999854 345444
No 72
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=85.03 E-value=3.5 Score=34.09 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=37.1
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEe
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFN 128 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~ 128 (143)
.|-.|+||+|++.--.++......+.|||...+|+|..-.-..+
T Consensus 119 ad~y~tIL~G~~~~~~~g~~~~evy~pGd~~~l~rg~a~~y~m~ 162 (216)
T PF04622_consen 119 ADDYFTILSGEQWAWSPGSLEPEVYKPGDSHHLPRGEAKQYQMP 162 (216)
T ss_pred eeeEEEEEEEEEEEEcCCCCCceEeccCCEEEecCceEEEEEeC
Confidence 78899999999999888764447899999999999987665554
No 73
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=84.64 E-value=4.8 Score=30.14 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=28.2
Q ss_pred eeeeccceEEEEEEeEEEEEeCCCee--eEEEcCC-cEEEEcCCCEEEEE
Q 032303 80 PWDWQVDQLVYIEEGEVRVVPEGSQR--YMRFLAG-DLIRYPKWFEADLF 126 (143)
Q Consensus 80 ~~~y~~dE~~yILEG~V~vt~d~G~~--~~e~~AG-Dlv~fPkG~~gtW~ 126 (143)
.+|-...|.+++|+|+++|..+++.. ...+..- ..+.+|+|..-...
T Consensus 49 H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~ 98 (131)
T PF05523_consen 49 HAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIK 98 (131)
T ss_dssp EEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE
T ss_pred cccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhh
Confidence 34445799999999999999887632 2445544 48999999876664
No 74
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=84.47 E-value=4.1 Score=27.14 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=38.7
Q ss_pred eeecCce-eeeeeccceEEEEEEeEEEEEeCC-CeeeEEEcCCcEEEEcCCCEEE
Q 032303 72 WKTGKCK-LPWDWQVDQLVYIEEGEVRVVPEG-SQRYMRFLAGDLIRYPKWFEAD 124 (143)
Q Consensus 72 Wec~pg~-f~~~y~~dE~~yILEG~V~vt~d~-G~~~~e~~AGDlv~fPkG~~gt 124 (143)
|+=.||. ..|.-.......+.+|.|=||.++ ... +-+.|||.+.++.|-...
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWlT~~g~~~D-~~L~~G~~l~l~~g~~vv 55 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWLTREGDPDD-YWLQAGDSLRLRRGGRVV 55 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEEECCCCCCC-EEECCCCEEEeCCCCEEE
Confidence 3334444 345555566689999999999986 455 789999999999997643
No 75
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=81.87 E-value=8.5 Score=27.34 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=30.2
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEe
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFN 128 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~ 128 (143)
..=++|+++|+++|..+. ..+.+|++++|..|-..+-...
T Consensus 20 ~~~~iyv~~G~~~v~~~~----~~~~~~~~~~l~~g~~i~~~a~ 59 (104)
T PF05726_consen 20 HNAFIYVLEGSVEVGGEE----DPLEAGQLVVLEDGDEIELTAG 59 (104)
T ss_dssp -EEEEEEEESEEEETTTT----EEEETTEEEEE-SECEEEEEES
T ss_pred CEEEEEEEECcEEECCCc----ceECCCcEEEECCCceEEEEEC
Confidence 467899999998885443 3689999999997777776666
No 76
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=81.00 E-value=7.3 Score=32.70 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=43.1
Q ss_pred eeeecCce-eeeeeccceEEE-EEEeEEEEEeCCCeeeEEEcCC--------cEEEEcCCCEEEEEEecceEEEEEEEe
Q 032303 71 MWKTGKCK-LPWDWQVDQLVY-IEEGEVRVVPEGSQRYMRFLAG--------DLIRYPKWFEADLFFNGPYQERYSFRA 139 (143)
Q Consensus 71 iWec~pg~-f~~~y~~dE~~y-ILEG~V~vt~d~G~~~~e~~AG--------Dlv~fPkG~~gtW~V~e~vrK~Y~~~a 139 (143)
+..=.+|. +....+..|.+. +|+|+++|+.++.+. .+++.- |.+.+|.|.+.+=+-.+. -|+|...+
T Consensus 31 ~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~-~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-ae~~~~sa 107 (261)
T PF04962_consen 31 VLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEF-YELGGRESVFDGPPDALYVPRGTKVVIFASTD-AEFAVCSA 107 (261)
T ss_dssp CEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEE-EEE-TTSSGGGS--EEEEE-TT--EEEEESST-EEEEEEEE
T ss_pred EEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceE-EEecccccccCCCCcEEEeCCCCeEEEEEcCC-CEEEEEcc
Confidence 45544443 223344567765 579999999977555 688887 999999999987777655 56666543
No 77
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=80.96 E-value=2.6 Score=40.43 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=39.3
Q ss_pred eeeeecCceeeeeec--cceEEEEEEeEEEEEeCCCeeeEEEcCCcEE
Q 032303 70 SMWKTGKCKLPWDWQ--VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLI 115 (143)
Q Consensus 70 giWec~pg~f~~~y~--~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv 115 (143)
-.=.|.||-.-||.. .|-.|.|++|+.+|.-||.-. .-++.||.|
T Consensus 572 ~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEVV-AILGKGDVF 618 (971)
T KOG0501|consen 572 QTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEVV-AILGKGDVF 618 (971)
T ss_pred HhccCCCcceeeecCCccceEEEEEecceEEeecCcEE-EEeecCccc
Confidence 445799999988876 699999999999999988877 789999976
No 78
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.07 E-value=2.2 Score=37.51 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=32.6
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCC
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKW 120 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG 120 (143)
..-+-.|+||+.-.|.-||++ +...+||.+.-|+|
T Consensus 112 qsAlRFvveG~Ga~T~VdGer-~~M~~GDfilTP~w 146 (351)
T COG3435 112 QSALRFVVEGKGAYTVVDGER-TPMEAGDFILTPAW 146 (351)
T ss_pred ccceEEEEeccceeEeecCce-eeccCCCEEEccCc
Confidence 578889999999999999999 89999999999987
No 79
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=80.03 E-value=3.9 Score=35.59 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=41.1
Q ss_pred ceeeeeecC-ceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 68 RWSMWKTGK-CKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 68 ~wgiWec~p-g~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
+-..|.-.. ..+. ....-.+++++||+++++.+ |+. ..+.+|+.+++|+.. +.|.+...
T Consensus 243 ~l~~~~i~~~~~~~-~~~~~~il~v~eG~~~l~~~-~~~-~~l~~G~s~~ipa~~-~~~~i~g~ 302 (312)
T COG1482 243 ALYKWDISGTAEFI-KQESFSILLVLEGEGTLIGG-GQT-LKLKKGESFFIPAND-GPYTIEGE 302 (312)
T ss_pred EEEEEeccChhhhc-cCCCcEEEEEEcCeEEEecC-CEE-EEEcCCcEEEEEcCC-CcEEEEec
Confidence 445555543 2221 23355789999999999987 666 799999999999984 34555554
No 80
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.87 E-value=2.9 Score=36.79 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=29.5
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCE
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~ 122 (143)
..-+.+|.||+..+.- +|+. .++.+||+|++|.+..
T Consensus 281 ~s~iy~V~eGsg~~~I-g~~r-f~~~~~D~fvVPsW~~ 316 (351)
T COG3435 281 DSTIYHVVEGSGYTII-GGER-FDWSAGDIFVVPSWAW 316 (351)
T ss_pred CCEEEEEEecceeEEE-CCEE-eeccCCCEEEccCcce
Confidence 3456789999999886 5666 7999999999998753
No 81
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=73.26 E-value=6.9 Score=25.00 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=23.9
Q ss_pred cceEEEEEEeEEEEEeCC--Cee--eEEEcCCcEE
Q 032303 85 VDQLVYIEEGEVRVVPEG--SQR--YMRFLAGDLI 115 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~--G~~--~~e~~AGDlv 115 (143)
.+.+++|++|.+.+...+ |.. ...+.+||.+
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 589999999999998754 442 2478888876
No 82
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=72.33 E-value=9.3 Score=28.93 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=22.6
Q ss_pred ceEEEEEEeEEEEEe--CCCee-e-EEEcCCcEEEE
Q 032303 86 DQLVYIEEGEVRVVP--EGSQR-Y-MRFLAGDLIRY 117 (143)
Q Consensus 86 dE~~yILEG~V~vt~--d~G~~-~-~e~~AGDlv~f 117 (143)
+.+++|++|.|++.- ++|.+ . ..+.|||.+=.
T Consensus 27 ~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 27 DMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred CeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 668889999999854 44543 2 34599998744
No 83
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=70.31 E-value=21 Score=26.99 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=37.5
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
.-=+|.|+.|+=+++-.+ +. .++.||+.++.+.+...+=+|.+.
T Consensus 23 ~p~i~~vlQG~K~~~~g~-~~-~~Y~~g~~lv~~~~lPv~~~v~~A 66 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLGD-QV-FEYDAGQYLVSSVDLPVESEVVEA 66 (155)
T ss_pred CCeEEEEEeeeEEEEECC-ce-EEecCCcEEEecCCCcEEEEEeec
Confidence 345899999999999874 55 799999999999999999998443
No 84
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=69.47 E-value=18 Score=31.05 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=39.1
Q ss_pred eeeccceEEE-EEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCE-EEEEEecce--EEEEEEEe
Q 032303 81 WDWQVDQLVY-IEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFE-ADLFFNGPY--QERYSFRA 139 (143)
Q Consensus 81 ~~y~~dE~~y-ILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~-gtW~V~e~v--rK~Y~~~a 139 (143)
+-.+..|+|. +|.|+++|+.+ |+. .++++.|.+.+|+|.+ -+-...... -|+|...|
T Consensus 69 ~fl~rrE~giV~lgG~~~V~vd-G~~-~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sA 129 (276)
T PRK00924 69 YFLERRELGIINIGGAGTVTVD-GET-YELGHRDALYVGKGAKEVVFASADAANPAKFYLNSA 129 (276)
T ss_pred eecCCcEEEEEEccceEEEEEC-CEE-EecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEcc
Confidence 3445678765 57899999975 566 6799999999999976 333222222 36776654
No 85
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=68.89 E-value=19 Score=30.50 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=29.9
Q ss_pred eeeeeecCc--eeeeeeccce-EEEEEEeEEE--EEeC--------------------CCeeeEEEcCCcEEEEcCCCE
Q 032303 69 WSMWKTGKC--KLPWDWQVDQ-LVYIEEGEVR--VVPE--------------------GSQRYMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 69 wgiWec~pg--~f~~~y~~dE-~~yILEG~V~--vt~d--------------------~G~~~~e~~AGDlv~fPkG~~ 122 (143)
....-..+| .|..|||... |+.=++|+=+ |... --.. +.++|||++++|+|+.
T Consensus 116 ~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~pGD~LYlPrG~~ 193 (319)
T PF08007_consen 116 ANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEE-VVLEPGDVLYLPRGWW 193 (319)
T ss_dssp EEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEE-EEE-TT-EEEE-TT-E
T ss_pred eEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEE-EEECCCCEEEECCCcc
Confidence 345667777 7888998644 4444777543 3330 0123 7899999999999974
No 86
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=68.39 E-value=39 Score=26.67 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=36.7
Q ss_pred Cceeeeeec-cceEEEEEEeE-EEEEeCCCeeeEEEcCCcEEEEcCCCEEEEE-EecceEE
Q 032303 76 KCKLPWDWQ-VDQLVYIEEGE-VRVVPEGSQRYMRFLAGDLIRYPKWFEADLF-FNGPYQE 133 (143)
Q Consensus 76 pg~f~~~y~-~dE~~yILEG~-V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~-V~e~vrK 133 (143)
.|.|. .|+ .+=+..+|+|. ++++.++......+.+++.+.|+-++..+-+ ..++++-
T Consensus 45 ~g~FS-~FpG~~R~l~~L~G~gl~L~~~~~~~~~~l~p~~~~~F~G~~~v~~~l~~G~~~d 104 (184)
T PF05962_consen 45 DGPFS-DFPGYDRILTLLEGNGLRLTHDGQQEHTLLQPFQPFAFDGDWPVTSELLDGPVRD 104 (184)
T ss_dssp SEEE----TT-EEEEEEEESS-EEEEETTCSE-EEE-BT--EEEETTS-EEEEESSS-EEE
T ss_pred CCCCC-CCCCCcEEEEEEeCCcEEEecCCCcceeccCCCCcEEcCCCCeEEEEECCCCEEE
Confidence 44465 555 67799999999 9999998843256999999999999988776 3344544
No 87
>COG1741 Pirin-related protein [General function prediction only]
Probab=67.77 E-value=8.6 Score=32.76 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=38.0
Q ss_pred cCce-eeeeec-c-ceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEE
Q 032303 75 GKCK-LPWDWQ-V-DQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFF 127 (143)
Q Consensus 75 ~pg~-f~~~y~-~-dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V 127 (143)
.||. |+++=+ . +=+-|+|+|+++=.+..|+. ..++|||+-.+-+|. |.++-
T Consensus 52 ~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~-~~i~pGdvqwMTAG~-GI~HS 105 (276)
T COG1741 52 APGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNK-GVIRPGDVQWMTAGS-GIVHS 105 (276)
T ss_pred cCCCcCCCCCCCCcEEEEEEEccEEEEeecCCce-eeecccceeEEcCCC-ceeec
Confidence 4543 555532 3 44569999999999998988 899999999999995 44443
No 88
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=64.80 E-value=29 Score=22.37 Aligned_cols=48 Identities=19% Similarity=0.069 Sum_probs=32.1
Q ss_pred eeecCceeeeeec--cceEEEEEEeEEEEEeC--CCe--eeEEEcCCcEEEEcC
Q 032303 72 WKTGKCKLPWDWQ--VDQLVYIEEGEVRVVPE--GSQ--RYMRFLAGDLIRYPK 119 (143)
Q Consensus 72 Wec~pg~f~~~y~--~dE~~yILEG~V~vt~d--~G~--~~~e~~AGDlv~fPk 119 (143)
=...+|..-+.-. .+.+.+|++|.+.+... +|. ....+.+||.+-...
T Consensus 20 ~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~ 73 (120)
T smart00100 20 VRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELA 73 (120)
T ss_pred EEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhh
Confidence 3455666544433 57888999999998854 333 235678999886543
No 89
>PRK15044 transcriptional regulator SirC; Provisional
Probab=62.71 E-value=14 Score=31.90 Aligned_cols=42 Identities=19% Similarity=0.039 Sum_probs=35.7
Q ss_pred eccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEE
Q 032303 83 WQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADL 125 (143)
Q Consensus 83 y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW 125 (143)
...-=.+.+-.|+++|+.+.|+- .+..|-+++++|||=.-+-
T Consensus 38 ~~~~~l~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~k~~~i~~ 79 (295)
T PRK15044 38 VANCLLFKLNKGSLRIENEFGEF-IEQSAPCLFLLEKDQTITL 79 (295)
T ss_pred ecceEEEEEecCeEEEEecCCce-EEecCCeeEEEeCCCEEEE
Confidence 34556788899999999999997 8999999999999976544
No 90
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=61.40 E-value=23 Score=24.88 Aligned_cols=41 Identities=15% Similarity=0.030 Sum_probs=29.7
Q ss_pred eEEEEEEeEEEEEeCCC-----eeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 87 QLVYIEEGEVRVVPEGS-----QRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 87 E~~yILEG~V~vt~d~G-----~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
....||+|++++...++ +..+.+.+|+..++++.. |+-.++
T Consensus 27 g~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~---wH~V~p 72 (82)
T PF09313_consen 27 GKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQ---WHRVEP 72 (82)
T ss_dssp EEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT----EEEEEE
T ss_pred EEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCc---eEEEEE
Confidence 56889999999998665 333789999999999874 544443
No 91
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=60.86 E-value=7.4 Score=26.86 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=11.0
Q ss_pred EEEcCCcEEEEcCCC
Q 032303 107 MRFLAGDLIRYPKWF 121 (143)
Q Consensus 107 ~e~~AGDlv~fPkG~ 121 (143)
.+-+|||+|++|+|+
T Consensus 83 ~~Q~~Ge~V~i~pg~ 97 (114)
T PF02373_consen 83 FVQKPGEFVFIPPGA 97 (114)
T ss_dssp EEEETT-EEEE-TT-
T ss_pred ceECCCCEEEECCCc
Confidence 678999999999995
No 92
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=60.85 E-value=8.7 Score=30.41 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=24.9
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCE
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~ 122 (143)
..=++|+++|++.|+.+ ++. ..+.+||++.+-....
T Consensus 135 ~~~l~~~~~G~~~i~~~-~~~-~~L~~~d~l~~~~~~~ 170 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEG-GNC-ISLSAGDLLLIDDEED 170 (184)
T ss_dssp SEEEEEESSS-EEECCC-EEE-EEE-TT-EEEEESEEC
T ss_pred CEEEEEEeeCcEEEecC-CCc-eEcCCCCEEEEeCCCc
Confidence 34567999999888866 455 7999999999887433
No 93
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=60.01 E-value=59 Score=24.61 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCHHHHhhcCCCceeeeeecCceeeeee--ccceEEEEEEeEEEEEe--CCCee--eEEEcCCcEEEEc
Q 032303 56 VSPERLKELDVSRWSMWKTGKCKLPWDW--QVDQLVYIEEGEVRVVP--EGSQR--YMRFLAGDLIRYP 118 (143)
Q Consensus 56 ps~~rl~~lGv~~wgiWec~pg~f~~~y--~~dE~~yILEG~V~vt~--d~G~~--~~e~~AGDlv~fP 118 (143)
.+++.+.++-. ....-.-.+|..-+.- ..+.+..|++|.+++.. ++|.. ...+++||.+-..
T Consensus 8 ~~~~~~~~l~~-~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 75 (211)
T PRK11753 8 QTDPTLEWFLS-HCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGEL 75 (211)
T ss_pred CCHHHHHHHHh-hCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeeh
Confidence 45555555432 2234455566554332 25778999999999873 45543 2468999997443
No 94
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=59.39 E-value=7 Score=28.49 Aligned_cols=19 Identities=16% Similarity=0.157 Sum_probs=17.3
Q ss_pred CcEEEEcCCCEEEEEEecc
Q 032303 112 GDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 112 GDlv~fPkG~~gtW~V~e~ 130 (143)
.+++.||+|+.|+|.|.-|
T Consensus 33 ~~~~~~p~n~~C~y~i~iP 51 (120)
T PF02408_consen 33 TSPPQFPANQNCTYQINIP 51 (120)
T ss_pred CCccccCCCCceEEEEEcC
Confidence 3999999999999999776
No 95
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=59.12 E-value=19 Score=28.20 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=32.4
Q ss_pred eeeecCceeeeeec--cceEEEEEEeEEEEEe--CCCee--eEEEcCCcEEEEc
Q 032303 71 MWKTGKCKLPWDWQ--VDQLVYIEEGEVRVVP--EGSQR--YMRFLAGDLIRYP 118 (143)
Q Consensus 71 iWec~pg~f~~~y~--~dE~~yILEG~V~vt~--d~G~~--~~e~~AGDlv~fP 118 (143)
.-...+|.+=+.-+ .+.+++|++|.|++.- ++|.. ...+.|||+|-..
T Consensus 33 ~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 33 LFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred heeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 34556676654433 4789999999999864 45653 2357899987643
No 96
>PRK11396 hypothetical protein; Provisional
Probab=58.13 E-value=62 Score=26.32 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=43.8
Q ss_pred Cceeeeeec-cceEEEEEEe-EEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEe-cceEEEEE
Q 032303 76 KCKLPWDWQ-VDQLVYIEEG-EVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFN-GPYQERYS 136 (143)
Q Consensus 76 pg~f~~~y~-~dE~~yILEG-~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~-e~vrK~Y~ 136 (143)
.|.|. .|+ .+=++.+|+| .++++.++... +++.++|.+.|+.+....=+.. .++..-|-
T Consensus 46 ~GpFS-~FpGidR~i~lL~G~g~~L~~~~~~~-~~l~~~~p~~F~Gd~~v~a~L~~G~v~~dfN 107 (191)
T PRK11396 46 NGEFS-LFPGMERIVTLLEGGEMFLESADRFN-HTLKPLQPFAFAADQVVKAKLTAGQMSMDFN 107 (191)
T ss_pred CCCCC-CCCCccEEEEEEECCCEEEeeCCccc-eecCCCCCeEeCCCCeeEEEECCCCeEEEEE
Confidence 55565 444 7899999998 78888776655 6789999999999988887754 44544333
No 97
>PRK09774 fec operon regulator FecR; Reviewed
Probab=57.10 E-value=37 Score=28.71 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=29.4
Q ss_pred eeeeeec-cceEEEEEEeEEEEEeCC--CeeeEEEcCCcEEEEcCC
Q 032303 78 KLPWDWQ-VDQLVYIEEGEVRVVPEG--SQRYMRFLAGDLIRYPKW 120 (143)
Q Consensus 78 ~f~~~y~-~dE~~yILEG~V~vt~d~--G~~~~e~~AGDlv~fPkG 120 (143)
+|..... ..-.+.++||+|.|...+ +.. ..+.||+.+.|..+
T Consensus 183 ~F~V~~~~~~~~V~V~eG~V~v~~~~~~~~~-~~L~~Gq~~~~~~~ 227 (319)
T PRK09774 183 EFTVRQQDNFTQLAVQQHAVEVLLASAPAQK-RIVNAGESLQFSAS 227 (319)
T ss_pred EEEEEEcCCCceEEEEEEEEEEEECCCCCcc-eEECCCcEEEEcCC
Confidence 4554433 223467899999998754 234 57999999999775
No 98
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=55.75 E-value=24 Score=26.31 Aligned_cols=32 Identities=9% Similarity=0.327 Sum_probs=23.2
Q ss_pred cceEEEEEEeEEEEEe--CCCee--eEEEcCCcEEE
Q 032303 85 VDQLVYIEEGEVRVVP--EGSQR--YMRFLAGDLIR 116 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~--d~G~~--~~e~~AGDlv~ 116 (143)
.+-+.+|++|.|++.- ++|++ ...+++||.+-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 4678899999999753 45654 24579999774
No 99
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=54.15 E-value=20 Score=30.48 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=23.9
Q ss_pred EEEEEeEEEEEeCCCeeeEEEcCCcEEEEcC
Q 032303 89 VYIEEGEVRVVPEGSQRYMRFLAGDLIRYPK 119 (143)
Q Consensus 89 ~yILEG~V~vt~d~G~~~~e~~AGDlv~fPk 119 (143)
.|||||++...-+..= ++++|||...+-+
T Consensus 207 lyvLeGk~vYrLn~dw--v~V~aGD~mwm~A 235 (264)
T COG3257 207 LYVLEGKGVYRLNNNW--VPVEAGDYIWMGA 235 (264)
T ss_pred eEEEecceEEeecCce--EEeecccEEEeec
Confidence 6899999999886554 7999999987643
No 100
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=53.61 E-value=43 Score=29.90 Aligned_cols=70 Identities=14% Similarity=0.295 Sum_probs=50.6
Q ss_pred eeeeecCceee---eeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEEEEEEEeccC
Q 032303 70 SMWKTGKCKLP---WDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQERYSFRAYGD 142 (143)
Q Consensus 70 giWec~pg~f~---~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK~Y~~~a~~~ 142 (143)
-+..|..+-=. +.-+.|=++.=..|...|+.+=|. ..+.|+.+.+||+|++=.=.|.++-|- |....||+
T Consensus 137 H~~~cN~sM~~safyNsDGDFLiVPQ~G~L~I~TEfGr--llV~P~EI~VIpqG~RFsi~v~~~sRG-YilEvYg~ 209 (446)
T KOG1417|consen 137 HIYSCNTSMENSAFYNSDGDFLIVPQQGRLWITTEFGR--LLVTPNEIAVIPQGIRFSIDVPGPSRG-YILEVYGA 209 (446)
T ss_pred EEEeecCCcccceeecCCCCEEEecccCcEEEEeeccc--eeecccceEEeecccEEEEecCCCCcc-eEEEEecc
Confidence 45555443322 122344455556788889988887 689999999999999999888888775 77777775
No 101
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=52.12 E-value=36 Score=21.89 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=29.1
Q ss_pred ecCceeeeeec--cceEEEEEEeEEEEEeCC--Ce--eeEEEcCCcEEEEc
Q 032303 74 TGKCKLPWDWQ--VDQLVYIEEGEVRVVPEG--SQ--RYMRFLAGDLIRYP 118 (143)
Q Consensus 74 c~pg~f~~~y~--~dE~~yILEG~V~vt~d~--G~--~~~e~~AGDlv~fP 118 (143)
..+|..-+..+ .+.+.+|++|.+.+...+ |. ....+.+||.+-..
T Consensus 22 ~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 22 FPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred eCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 34555544433 477899999999997654 32 23567788877553
No 102
>PRK15185 transcriptional regulator HilD; Provisional
Probab=51.93 E-value=27 Score=30.39 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=34.6
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEE
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLF 126 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~ 126 (143)
.-=++|+-.|+++|+.++| . ..+-|+++.+++|+-.-.-.
T Consensus 49 ~~~l~~~~~~~~~i~~~~~-~-~~~~~~~~~~~~k~~~i~~~ 88 (309)
T PRK15185 49 SFTLVCFRSGKLTISNNHD-T-IYCDEPGMLVLKKEQVVNVT 88 (309)
T ss_pred eeEEEEEccceEEEEcCCc-e-EEeCCCceEEEeCCcEEEEE
Confidence 4567889999999999998 4 79999999999999887653
No 103
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.92 E-value=7.3 Score=28.92 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=27.8
Q ss_pred EEEEeEEEEEeCCCeeeEEEcCCcEEEEc----CCCEEEEEEe
Q 032303 90 YIEEGEVRVVPEGSQRYMRFLAGDLIRYP----KWFEADLFFN 128 (143)
Q Consensus 90 yILEG~V~vt~d~G~~~~e~~AGDlv~fP----kG~~gtW~V~ 128 (143)
-||.|+-+||--|..+ -+|+|||.+.+- .++-|+=+|.
T Consensus 15 dilagrKTITIRD~SE-Shf~~g~vlrV~r~Ed~~~fc~I~vl 56 (106)
T COG3097 15 DILAGRKTITIRDKSE-SHFKPGDVLRVGRFEDDRYFCTIEVL 56 (106)
T ss_pred HHhCCCceEEEeccch-hcCCCCCEEEEEEecCCcEEEEEEEE
Confidence 3789999999987666 589999999763 3444554443
No 104
>PLN02868 acyl-CoA thioesterase family protein
Probab=51.47 E-value=72 Score=27.79 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=40.4
Q ss_pred cCCCHHHHhhcCCCceeeeeecCceeeeee--ccceEEEEEEeEEEEEeC--CCee-eEEEcCCcEEEE
Q 032303 54 RQVSPERLKELDVSRWSMWKTGKCKLPWDW--QVDQLVYIEEGEVRVVPE--GSQR-YMRFLAGDLIRY 117 (143)
Q Consensus 54 ~~ps~~rl~~lGv~~wgiWec~pg~f~~~y--~~dE~~yILEG~V~vt~d--~G~~-~~e~~AGDlv~f 117 (143)
+..+++.+.++-. ...+-...+|..=..- ..+.+++|++|+|+|... +|+. ...+++||.+-.
T Consensus 17 ~~L~~~~l~~l~~-~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 17 QRLPSSSLKKIAE-VVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred ccCCHHHHHHHHH-hceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 4445555555532 2345677788765443 357899999999998653 3432 345799998763
No 105
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=48.76 E-value=18 Score=28.01 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=16.9
Q ss_pred EEcCCcEEEEcCCCEEEEE
Q 032303 108 RFLAGDLIRYPKWFEADLF 126 (143)
Q Consensus 108 e~~AGDlv~fPkG~~gtW~ 126 (143)
.|.|||++.+-+|+...|.
T Consensus 61 ~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 61 LIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred ccCCccEEEecccchhhhc
Confidence 6899999999999987775
No 106
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=47.20 E-value=30 Score=24.53 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=14.8
Q ss_pred EEEcCCcEEEEcCCCEEEE
Q 032303 107 MRFLAGDLIRYPKWFEADL 125 (143)
Q Consensus 107 ~e~~AGDlv~fPkG~~gtW 125 (143)
..++.||.|+||+ +.|+.
T Consensus 56 ~~vk~GD~Vl~~~-~~g~~ 73 (93)
T cd00320 56 LSVKVGDKVLFPK-YAGTE 73 (93)
T ss_pred ccccCCCEEEECC-CCceE
Confidence 6899999999999 44554
No 107
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=46.39 E-value=53 Score=30.77 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=39.2
Q ss_pred eEEecCCCHHHHhhc------CCCceeeeeecCceeeeeeccceEEEEEEeEEEEEeCCC-eeeEEEcCCcEE
Q 032303 50 VRVERQVSPERLKEL------DVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGS-QRYMRFLAGDLI 115 (143)
Q Consensus 50 I~ve~~ps~~rl~~l------Gv~~wgiWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G-~~~~e~~AGDlv 115 (143)
++|=.+..+.-|.++ -|++=|-.=|..|.- ..|.+-|-+|...|..||| +...+++||+.|
T Consensus 312 V~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdv-----gkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 312 VRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDV-----GKEMYIVKEGKLAVVADDGVTVFVTLKAGSVF 379 (536)
T ss_pred hhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcc-----cceEEEEEccEEEEEecCCcEEEEEecCCcee
Confidence 444444444444443 344434444444332 4799999999999999887 556889999865
No 108
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=44.40 E-value=48 Score=26.14 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=24.6
Q ss_pred cceEEEEEEeEEEEEe--CCCee--eEEEcCCcEEEEcCC
Q 032303 85 VDQLVYIEEGEVRVVP--EGSQR--YMRFLAGDLIRYPKW 120 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~--d~G~~--~~e~~AGDlv~fPkG 120 (143)
.+-+.+|++|.|++.- ++|++ ...+.+||++-+..+
T Consensus 56 ~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~ 95 (230)
T PRK09391 56 ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESG 95 (230)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCC
Confidence 4677788999999874 45543 223589998865543
No 109
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=44.06 E-value=38 Score=27.95 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=23.5
Q ss_pred eEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecceEE
Q 032303 94 GEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGPYQE 133 (143)
Q Consensus 94 G~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~vrK 133 (143)
|+-.|.+..|...+...+||+|+||.. .+|=..||.+
T Consensus 130 GEl~~~~~~g~~~Vkp~aG~~vlfps~---~lH~v~pVt~ 166 (226)
T PRK05467 130 GELVIEDTYGEHRVKLPAGDLVLYPST---SLHRVTPVTR 166 (226)
T ss_pred CceEEecCCCcEEEecCCCeEEEECCC---CceeeeeccC
Confidence 344444344444478899999999974 5565566543
No 110
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=43.65 E-value=26 Score=29.21 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=21.5
Q ss_pred EeEEEEEeCCCeeeEEEcCCcEEEEcCC
Q 032303 93 EGEVRVVPEGSQRYMRFLAGDLIRYPKW 120 (143)
Q Consensus 93 EG~V~vt~d~G~~~~e~~AGDlv~fPkG 120 (143)
-|+.+|.+.-|+-.+.+-|||+|.+|.-
T Consensus 132 GGeLVv~dtYg~h~VklPAGdLVlypSt 159 (229)
T COG3128 132 GGELVVNDTYGNHRVKLPAGDLVLYPST 159 (229)
T ss_pred CceEEEeccccceEEeccCCCEEEcccc
Confidence 3666677766765589999999999963
No 111
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=43.41 E-value=93 Score=22.80 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=19.5
Q ss_pred EeEEEEEeCCCe--eeEEEcCCcEEEEcCCC
Q 032303 93 EGEVRVVPEGSQ--RYMRFLAGDLIRYPKWF 121 (143)
Q Consensus 93 EG~V~vt~d~G~--~~~e~~AGDlv~fPkG~ 121 (143)
+|+|.-.-++.. + ..+++||.|+||+--
T Consensus 46 ~g~VvAVG~G~~~~~-~~Vk~GD~Vl~~~y~ 75 (100)
T PTZ00414 46 EGTVVAVAAATKDWT-PTVKVGDTVLLPEFG 75 (100)
T ss_pred eeEEEEECCCCcccc-ceecCCCEEEEcCCC
Confidence 676665554422 4 689999999998743
No 112
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.28 E-value=52 Score=31.88 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=33.9
Q ss_pred eecCceeeeee-c-cceEEEEEEeEEEEEeCCC---eeeEEEcCCcEEE
Q 032303 73 KTGKCKLPWDW-Q-VDQLVYIEEGEVRVVPEGS---QRYMRFLAGDLIR 116 (143)
Q Consensus 73 ec~pg~f~~~y-~-~dE~~yILEG~V~vt~d~G---~~~~e~~AGDlv~ 116 (143)
-++||.+=..- + .+|+..|+.|++.+...+| .....+++||.+=
T Consensus 446 ~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~G 494 (727)
T KOG0498|consen 446 YFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFG 494 (727)
T ss_pred ccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccc
Confidence 36788875443 2 6999999999999998875 2237899999875
No 113
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=42.98 E-value=18 Score=27.24 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=32.9
Q ss_pred ceeeeeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCC
Q 032303 68 RWSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWF 121 (143)
Q Consensus 68 ~wgiWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~ 121 (143)
.-..|-|+.+.+.|.-...+ .-+....+.+.+|. .+..||.|++=|.+
T Consensus 16 dg~~~iCpeC~~EW~~~~~~---~~~~~~~~kDsnG~---~L~dGDsV~liKDL 63 (109)
T TIGR00686 16 DGTQLICPSCLYEWNENEVN---DDDDELIVKDCNGN---LLANGDSVILIKDL 63 (109)
T ss_pred cCCeeECccccccccccccc---cccCCceEEcCCCC---CccCCCEEEEEeec
Confidence 44579999999988754322 12333456777786 48999999997644
No 114
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=42.01 E-value=23 Score=24.69 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=11.4
Q ss_pred eEEEcCCcEEEEcCCCE
Q 032303 106 YMRFLAGDLIRYPKWFE 122 (143)
Q Consensus 106 ~~e~~AGDlv~fPkG~~ 122 (143)
.++-++||+++||..+.
T Consensus 67 ~~~p~~G~lvlFPs~l~ 83 (101)
T PF13759_consen 67 IVEPEEGDLVLFPSWLW 83 (101)
T ss_dssp EE---TTEEEEEETTSE
T ss_pred EeCCCCCEEEEeCCCCE
Confidence 36778999999998763
No 115
>smart00783 A_amylase_inhib Alpha amylase inhibitor. Alpha amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases.
Probab=41.08 E-value=81 Score=21.89 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=18.6
Q ss_pred EEEEeCCCeeeEEEcCCcEEEEcCCCEE
Q 032303 96 VRVVPEGSQRYMRFLAGDLIRYPKWFEA 123 (143)
Q Consensus 96 V~vt~d~G~~~~e~~AGDlv~fPkG~~g 123 (143)
|..++..-.+...+.|||...|| |+-+
T Consensus 32 V~Y~dg~~~pCr~~~PG~~~Tf~-GYgt 58 (69)
T smart00783 32 VVYTDGTWGPCRTAAPGDITTFG-GYGT 58 (69)
T ss_pred EEEeCCCcceeEeeCCCCEEEec-cccc
Confidence 44444333456899999999999 7643
No 116
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=40.75 E-value=21 Score=31.15 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=41.0
Q ss_pred ccceeceEEecCCCHHHHhhcCCCceeeeeecCceeeeeec-cceEEEEEE-eEEE-------EEeC-CC-------eee
Q 032303 44 LEELYNVRVERQVSPERLKELDVSRWSMWKTGKCKLPWDWQ-VDQLVYIEE-GEVR-------VVPE-GS-------QRY 106 (143)
Q Consensus 44 ~~e~~~I~ve~~ps~~rl~~lGv~~wgiWec~pg~f~~~y~-~dE~~yILE-G~V~-------vt~d-~G-------~~~ 106 (143)
..+-+.|+|-. +.+-.++. .-|++..+++.+-.+-. .-|++|=+. .... =..+ +| + +
T Consensus 86 A~~~LSiQVHP--~d~~A~~~---~~g~~gkte~w~y~D~~~k~Eli~g~~~~~~~~~~e~l~~~i~~~~~~d~~lLn-~ 159 (312)
T COG1482 86 ANDPLSIQVHP--SDEYAEEG---EEGILGKTECWYYKDANHKPELIYGLTPAKSKPAIEELKEMIDRGGLFDPLLLN-R 159 (312)
T ss_pred cCCcceEEECC--CHHHHhhc---ccCccCCCcceeecCCCCCceEEEEEchhhcchhHHHHHHhhhhccccchhhhc-E
Confidence 34556788854 44444442 22356666654322222 468888776 2211 0001 22 3 4
Q ss_pred EEEcCCcEEEEcCCCE
Q 032303 107 MRFLAGDLIRYPKWFE 122 (143)
Q Consensus 107 ~e~~AGDlv~fPkG~~ 122 (143)
++++|||.+++|+|..
T Consensus 160 v~lkpGe~~fl~Agt~ 175 (312)
T COG1482 160 VKLKPGEAFFLPAGTP 175 (312)
T ss_pred EecCCCCEEEecCCCc
Confidence 8999999999999974
No 117
>PRK04980 hypothetical protein; Provisional
Probab=40.28 E-value=30 Score=25.56 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=26.5
Q ss_pred EEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEE
Q 032303 91 IEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLF 126 (143)
Q Consensus 91 ILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~ 126 (143)
||+|+=++|--++.. -++.|||.+.+--.=.|+|-
T Consensus 15 ILsGkKTiTiRd~se-~~~~~G~~~~V~~~e~g~~~ 49 (102)
T PRK04980 15 ILAGRKTITIRDESE-SHFKPGDVLRVGTFEDDRYF 49 (102)
T ss_pred HHcCCceEEeeCCcc-cCCCCCCEEEEEECCCCcEE
Confidence 789999999977766 58999999999533334444
No 118
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=39.85 E-value=17 Score=30.55 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=14.6
Q ss_pred EEEcCCcEEEEcCCCE
Q 032303 107 MRFLAGDLIRYPKWFE 122 (143)
Q Consensus 107 ~e~~AGDlv~fPkG~~ 122 (143)
+.+++||.+++|+|+-
T Consensus 153 v~v~~Gd~i~ipaGt~ 168 (302)
T TIGR00218 153 IKLKPGDFFYVPSGTP 168 (302)
T ss_pred cccCCCCEEEeCCCCc
Confidence 7899999999999974
No 119
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=39.11 E-value=55 Score=20.64 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=18.1
Q ss_pred ceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEE
Q 032303 86 DQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRY 117 (143)
Q Consensus 86 dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~f 117 (143)
--++.|..|...+.+.+ + ..|.+||.+++
T Consensus 28 ~~i~~i~R~~~~~~p~~-~--~~l~~gD~l~v 56 (71)
T PF02080_consen 28 VRIVAIKRGGEIIIPDG-D--TVLQAGDILIV 56 (71)
T ss_dssp EEEEEEEETEEEES--T-T---BE-TTEEEEE
T ss_pred EEEEEEEECCEEECCCC-C--CEECCCCEEEE
Confidence 35667778855555554 4 47999999986
No 120
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=38.82 E-value=57 Score=20.12 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=14.5
Q ss_pred eEEEEEeCCCeeeEEEcCCcEE
Q 032303 94 GEVRVVPEGSQRYMRFLAGDLI 115 (143)
Q Consensus 94 G~V~vt~d~G~~~~e~~AGDlv 115 (143)
|...|..++|.. ..|.+||..
T Consensus 26 G~L~v~~~~g~~-~~i~sGdv~ 46 (48)
T PF02237_consen 26 GALLVRTEDGSI-RTISSGDVS 46 (48)
T ss_dssp SEEEEEETTEEE-EEESSSEEE
T ss_pred CEEEEEECCCCE-EEEEEEEEE
Confidence 566666777755 678888865
No 121
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=37.73 E-value=1.4e+02 Score=21.36 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEeEEEEEeCCC--eeeEEEcCCcEEEEcCCCEEE
Q 032303 92 EEGEVRVVPEGS--QRYMRFLAGDLIRYPKWFEAD 124 (143)
Q Consensus 92 LEG~V~vt~d~G--~~~~e~~AGDlv~fPkG~~gt 124 (143)
.+|.|.-.-.+. .+ ..+++||.|+|++ |.|+
T Consensus 36 ~~G~VvavG~g~~~~~-~~Vk~GD~Vl~~~-y~g~ 68 (91)
T PRK14533 36 MKAEVVAVGKLDDEED-FDIKVGDKVIFSK-YAGT 68 (91)
T ss_pred ceEEEEEECCCCcccc-ccccCCCEEEEcc-CCCe
Confidence 366666554322 24 6799999999998 5554
No 122
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=37.62 E-value=72 Score=22.71 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=13.9
Q ss_pred EEEcCCcEEEEcCCCEEE
Q 032303 107 MRFLAGDLIRYPKWFEAD 124 (143)
Q Consensus 107 ~e~~AGDlv~fPkG~~gt 124 (143)
..+++||.|+|++ +.|+
T Consensus 57 ~~vk~GD~Vlf~~-~~g~ 73 (95)
T PRK00364 57 LDVKVGDKVLFGK-YAGT 73 (95)
T ss_pred cccCCCCEEEEcC-CCCe
Confidence 6799999999997 4455
No 123
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=36.02 E-value=74 Score=24.68 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=28.2
Q ss_pred ecCceeeeee-c-cceEEEEEEeEEEEEe--CCCee-eE-EEcCCcEEEE
Q 032303 74 TGKCKLPWDW-Q-VDQLVYIEEGEVRVVP--EGSQR-YM-RFLAGDLIRY 117 (143)
Q Consensus 74 c~pg~f~~~y-~-~dE~~yILEG~V~vt~--d~G~~-~~-e~~AGDlv~f 117 (143)
-.+|..=+.- + .+.+.+|++|.|++.- ++|+. .. .+.|||.+-.
T Consensus 42 ~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 42 IQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred ecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 4466543332 2 4778888999998774 34543 22 3489999854
No 124
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=35.94 E-value=29 Score=30.71 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=14.6
Q ss_pred eEEEcCCcEEEEcCCC
Q 032303 106 YMRFLAGDLIRYPKWF 121 (143)
Q Consensus 106 ~~e~~AGDlv~fPkG~ 121 (143)
++.++|||++++|+|.
T Consensus 238 ~v~l~pGeaifipAg~ 253 (389)
T PRK15131 238 VVKLNPGEAMFLFAET 253 (389)
T ss_pred EEEeCCCCEEEeCCCC
Confidence 3789999999999996
No 125
>COG3712 FecR Fe2+-dicitrate sensor, membrane component [Inorganic ion transport and metabolism / Signal transduction mechanisms]
Probab=35.33 E-value=46 Score=29.15 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=30.2
Q ss_pred ceeeeee-ccceEEEEEEeEEEEEeCCCe--eeEEEcCCcEEEEc
Q 032303 77 CKLPWDW-QVDQLVYIEEGEVRVVPEGSQ--RYMRFLAGDLIRYP 118 (143)
Q Consensus 77 g~f~~~y-~~dE~~yILEG~V~vt~d~G~--~~~e~~AGDlv~fP 118 (143)
..|...- +..=.+.++||+|.|.+.++. ..+ ++||..+.|-
T Consensus 185 T~F~Vr~~~~~t~V~v~eG~V~v~~~~~~~~~~v-l~aGq~~~~~ 228 (322)
T COG3712 185 TRFNVRREDGATRVTVLEGSVRVSPAGGRAAERV-LGAGQSVRFD 228 (322)
T ss_pred eEEEEEecCCcEEEEEEeeeEEEecCCCcccchh-cCCCeeEEec
Confidence 3465443 345567799999999999873 325 9999999887
No 126
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=33.87 E-value=83 Score=26.68 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=29.5
Q ss_pred EEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 91 IEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 91 ILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
+-|-++.|+..+|+. ..+.|||++++-+.- +.+...
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~---~~~~~~ 47 (274)
T PRK09978 12 YARHKYILTMVNGEY-RYFNGGDLVFADASQ---IRVDKC 47 (274)
T ss_pred EEcceEEEEEcCCce-eEecCCcEEEEeccc---cccccc
Confidence 347788999999998 899999999998876 666554
No 127
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=33.49 E-value=29 Score=26.14 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=34.6
Q ss_pred CHHHHhhcCC---CceeeeeecCceeeeeeccceEEEEEEeE---EEEEeCCCeeeEEEcCCcEEEEc
Q 032303 57 SPERLKELDV---SRWSMWKTGKCKLPWDWQVDQLVYIEEGE---VRVVPEGSQRYMRFLAGDLIRYP 118 (143)
Q Consensus 57 s~~rl~~lGv---~~wgiWec~pg~f~~~y~~dE~~yILEG~---V~vt~d~G~~~~e~~AGDlv~fP 118 (143)
.++-|+.-|. ..--+|.-+-|.-= .-|+++|+ -.|...|... ....+||.|++-
T Consensus 28 D~~Ll~aagi~~~E~V~I~Nv~NG~Rf-------~TYvI~g~~gSg~I~lNGAAA-r~~~~GD~vII~ 87 (111)
T cd06919 28 DEDLLEAAGILPYEKVLVVNVNNGARF-------ETYVIPGERGSGVICLNGAAA-RLGQPGDRVIIM 87 (111)
T ss_pred CHHHHHhcCCCCCCEEEEEECCCCcEE-------EEEEEEcCCCCCEEEeCCHHH-hcCCCCCEEEEE
Confidence 3455555554 24566666655421 23667666 6777777666 789999999874
No 128
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=32.06 E-value=23 Score=26.32 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=9.7
Q ss_pred EEcCCcEEEEc
Q 032303 108 RFLAGDLIRYP 118 (143)
Q Consensus 108 e~~AGDlv~fP 118 (143)
+++|||+|+|-
T Consensus 76 ~~qpGDlvff~ 86 (134)
T TIGR02219 76 AAQPGDVLVFR 86 (134)
T ss_pred cCCCCCEEEEe
Confidence 57999999995
No 129
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=32.01 E-value=23 Score=28.52 Aligned_cols=13 Identities=23% Similarity=0.490 Sum_probs=11.1
Q ss_pred EEcCCcEEEEcCC
Q 032303 108 RFLAGDLIRYPKW 120 (143)
Q Consensus 108 e~~AGDlv~fPkG 120 (143)
+++|||+|+|..|
T Consensus 128 ~lqpGDLVfF~~~ 140 (190)
T PRK10838 128 KLRTGDLVLFRAG 140 (190)
T ss_pred CCCCCcEEEECCC
Confidence 5799999999855
No 130
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=31.17 E-value=2e+02 Score=21.89 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=24.8
Q ss_pred ccceEEEEEEe---EEEEEeCCCee-eEEEcCC------cEEEEcCCCE
Q 032303 84 QVDQLVYIEEG---EVRVVPEGSQR-YMRFLAG------DLIRYPKWFE 122 (143)
Q Consensus 84 ~~dE~~yILEG---~V~vt~d~G~~-~~e~~AG------Dlv~fPkG~~ 122 (143)
..||+-|..+| ++.+..+||.. .+.+++. =.+++|+|.-
T Consensus 60 ~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W 108 (139)
T PF06172_consen 60 DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTW 108 (139)
T ss_dssp SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSE
T ss_pred CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEE
Confidence 78999999999 34445566654 1344433 2588999863
No 131
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=31.08 E-value=74 Score=23.38 Aligned_cols=21 Identities=29% Similarity=0.165 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCEEEEEEecc
Q 032303 110 LAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 110 ~AGDlv~fPkG~~gtW~V~e~ 130 (143)
.+||.|++|+|....-++..+
T Consensus 10 ~~g~~V~I~~g~~v~lD~~~~ 30 (125)
T PF10162_consen 10 GAGDNVVIPAGQTVLLDVSTP 30 (125)
T ss_pred CCCCEEEECCCCEEEEcCCCh
Confidence 578888888888877777744
No 132
>PRK02946 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated
Probab=30.92 E-value=25 Score=33.13 Aligned_cols=39 Identities=26% Similarity=0.495 Sum_probs=29.5
Q ss_pred eeeccceEEEEEEeEEEEEeCC--------CeeeEEEcCCcEEEEcCCC
Q 032303 81 WDWQVDQLVYIEEGEVRVVPEG--------SQRYMRFLAGDLIRYPKWF 121 (143)
Q Consensus 81 ~~y~~dE~~yILEG~V~vt~d~--------G~~~~e~~AGDlv~fPkG~ 121 (143)
.=||+||+||+.+=..+-.|.- |++-..++|+|.| |.=|
T Consensus 473 VFYDYDEI~ylTd~nFR~iP~pr~~e~ems~epWysVgp~DVF--PEeF 519 (575)
T PRK02946 473 VFYDYDEICYLTECNFRDIPPPRYPEDEMSSEPWYSVGPGDVF--PEEF 519 (575)
T ss_pred EEecccceeeecccccccCCCCCChhHhhccCCCcccCCCCcC--HHHH
Confidence 3489999999999888877754 5665678888865 6543
No 133
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=30.22 E-value=1.1e+02 Score=23.92 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=11.4
Q ss_pred CceeeeeecCceee
Q 032303 67 SRWSMWKTGKCKLP 80 (143)
Q Consensus 67 ~~wgiWec~pg~f~ 80 (143)
+.||+|...|++=.
T Consensus 2 ~~~~~~~g~~~~~~ 15 (159)
T cd04715 2 FKWGVKRGEGGKKK 15 (159)
T ss_pred cccceecccccccC
Confidence 57999999998753
No 134
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=29.86 E-value=96 Score=24.11 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=22.3
Q ss_pred cceEEEEEEeEEEEEe--CCCee-eEEEcCCcEEE
Q 032303 85 VDQLVYIEEGEVRVVP--EGSQR-YMRFLAGDLIR 116 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~--d~G~~-~~e~~AGDlv~ 116 (143)
.+.++.|++|.|++.- ++++. ...+.+||.+-
T Consensus 48 ~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 48 ADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred cceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 5789999999999964 33332 24567888754
No 135
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=29.59 E-value=68 Score=30.52 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=28.1
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEE
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRY 117 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~f 117 (143)
..=...|++|-|.+..++|+.+-.+.+||+|=|
T Consensus 48 ~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~ 80 (610)
T COG2905 48 VHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGF 80 (610)
T ss_pred cceeEEEEeceeeEEcCCCeeeeeeccCccccc
Confidence 345677899999999999998788999999854
No 136
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=28.95 E-value=37 Score=26.12 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=33.8
Q ss_pred CHHHHhhcCC---CceeeeeecCceeeeeeccceEEEEEEeE---EEEEeCCCeeeEEEcCCcEEEEcC
Q 032303 57 SPERLKELDV---SRWSMWKTGKCKLPWDWQVDQLVYIEEGE---VRVVPEGSQRYMRFLAGDLIRYPK 119 (143)
Q Consensus 57 s~~rl~~lGv---~~wgiWec~pg~f~~~y~~dE~~yILEG~---V~vt~d~G~~~~e~~AGDlv~fPk 119 (143)
.++-|++-|. ..--+|.-+-|.- =.-|+++|+ -.|-..|... ....+||.|++-.
T Consensus 29 D~~Lm~aagi~p~E~V~V~Nv~NG~R-------f~TYvI~G~~GSg~I~lNGAAA-rl~~~GD~VII~s 89 (126)
T TIGR00223 29 DEDLLDAAGILENEKVDIVNVNNGKR-------FSTYAIAGKRGSRIICVNGAAA-RCVSVGDIVIIAS 89 (126)
T ss_pred CHHHHHhcCCCCCCEEEEEECCCCcE-------EEEEEEEcCCCCCEEEeCCHHH-hcCCCCCEEEEEE
Confidence 3455555554 2345565555541 123667766 6677666666 7899999998743
No 137
>PHA00663 hypothetical protein
Probab=28.71 E-value=54 Score=22.48 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCEEEEEEecc
Q 032303 110 LAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 110 ~AGDlv~fPkG~~gtW~V~e~ 130 (143)
++||.|-+|.|-+.+|.+...
T Consensus 16 ~~gdvFdvpdg~kaSWfvpA~ 36 (68)
T PHA00663 16 EPGDKFDVPDGAKASWFAPAS 36 (68)
T ss_pred ccCceeecCCCCeeeeEeehh
Confidence 499999999999999998653
No 138
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.71 E-value=31 Score=32.45 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=32.7
Q ss_pred eeeeeecc-ceEEEEEEeEEEE---------------Ee-----CC-Ceee--EEEcCCcEEEEcCCCEEEEEEec
Q 032303 78 KLPWDWQV-DQLVYIEEGEVRV---------------VP-----EG-SQRY--MRFLAGDLIRYPKWFEADLFFNG 129 (143)
Q Consensus 78 ~f~~~y~~-dE~~yILEG~V~v---------------t~-----d~-G~~~--~e~~AGDlv~fPkG~~gtW~V~e 129 (143)
.|.=||+. +-|+.=|||+=.- .. ++ |++. .-+.|||++.||.|+--.=+..+
T Consensus 330 GfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~~ 405 (629)
T KOG3706|consen 330 GFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTPA 405 (629)
T ss_pred CCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccccc
Confidence 36667874 6666778887431 11 11 4441 24799999999999865544433
No 139
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=28.67 E-value=38 Score=26.02 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=34.6
Q ss_pred CHHHHhhcCC---CceeeeeecCceeeeeeccceEEEEEEeE---EEEEeCCCeeeEEEcCCcEEEEc
Q 032303 57 SPERLKELDV---SRWSMWKTGKCKLPWDWQVDQLVYIEEGE---VRVVPEGSQRYMRFLAGDLIRYP 118 (143)
Q Consensus 57 s~~rl~~lGv---~~wgiWec~pg~f~~~y~~dE~~yILEG~---V~vt~d~G~~~~e~~AGDlv~fP 118 (143)
.++-|++-|. ..-.+|.-+-|.-= .-|+++|+ -.|...|... ....+||.|++-
T Consensus 29 D~~Ll~aagi~p~E~V~V~Nv~NG~Rf-------~TYvI~g~~GSg~I~lNGAAA-r~~~~GD~vII~ 88 (126)
T PRK05449 29 DEDLLDAAGILENEKVQIVNVNNGARF-------ETYVIAGERGSGVICLNGAAA-RLVQVGDLVIIA 88 (126)
T ss_pred CHHHHHhcCCCCCCEEEEEECCCCcEE-------EEEEEEcCCCCCEEEeCCHHH-hcCCCCCEEEEE
Confidence 3455665564 34566666655421 23666665 6677777666 789999999874
No 140
>COG5583 Uncharacterized small protein [Function unknown]
Probab=28.43 E-value=76 Score=21.07 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.9
Q ss_pred eEEEEEeCCCeeeEEEcCCcEEEEcCC
Q 032303 94 GEVRVVPEGSQRYMRFLAGDLIRYPKW 120 (143)
Q Consensus 94 G~V~vt~d~G~~~~e~~AGDlv~fPkG 120 (143)
|+|+||.-||.. +.+.+-.-|.|+..
T Consensus 24 GsV~ItVhdgqV-iQIE~~EK~Rl~q~ 49 (54)
T COG5583 24 GSVTITVHDGQV-IQIEASEKVRLRQN 49 (54)
T ss_pred ceEEEEEECCEE-EEEehhhheecccc
Confidence 899999999988 89999998888764
No 141
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=28.40 E-value=49 Score=23.25 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=13.3
Q ss_pred EEEcCCcEEEEcCCCEE
Q 032303 107 MRFLAGDLIRYPKWFEA 123 (143)
Q Consensus 107 ~e~~AGDlv~fPkG~~g 123 (143)
..+++||.|.||+.---
T Consensus 56 ~~vk~GD~Vl~~~~~g~ 72 (93)
T PF00166_consen 56 MDVKVGDKVLFPKYAGT 72 (93)
T ss_dssp TSS-TTSEEEEETTTSE
T ss_pred eeeeeccEEeccccCce
Confidence 57899999999987733
No 142
>COG4579 Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms]
Probab=28.37 E-value=32 Score=31.78 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=31.1
Q ss_pred eeccceEEEEEEeEEEEEeC--------CCeeeEEEcCCcEEEEcCCCEEEEEE
Q 032303 82 DWQVDQLVYIEEGEVRVVPE--------GSQRYMRFLAGDLIRYPKWFEADLFF 127 (143)
Q Consensus 82 ~y~~dE~~yILEG~V~vt~d--------~G~~~~e~~AGDlv~fPkG~~gtW~V 127 (143)
-|++||+||+.|=.++-.|. .|++-..++|+|. ||.-|.--.-.
T Consensus 473 FYDYDEIcYlTevNfRdiP~PR~pEdEMssEpWYSV~P~Dv--FPeef~~FL~~ 524 (578)
T COG4579 473 FYDYDEICYMTEVNFRDIPPPRYPEDEMASEPWYSVSPGDV--FPEEFRHFLCA 524 (578)
T ss_pred EeeccceeeeeecccccCCCCCCchhhhccCCceecCCCcc--Chhhccceeec
Confidence 47899999999988877653 2566567899995 67666543333
No 143
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=28.12 E-value=1.8e+02 Score=20.12 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=26.7
Q ss_pred eeeeeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEE
Q 032303 69 WSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRF 109 (143)
Q Consensus 69 wgiWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~ 109 (143)
.=+|...-|+|..+ .|+.-+-.|+|.|.-.+|.. +.+
T Consensus 12 ~RtWtD~tG~f~Ve---A~fv~~~dgkV~L~k~nG~~-i~V 48 (70)
T PF03983_consen 12 TRTWTDRTGKFKVE---AEFVGVNDGKVHLHKTNGVK-IAV 48 (70)
T ss_dssp SEEEEBSSS--EEE---EEEEEEETTEEEEE-TTS-E-EEE
T ss_pred ceEEEeCCCCEEEE---EEEEEeeCCEEEEEecCCeE-EEe
Confidence 34799999999865 57888899999999999976 444
No 144
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=27.17 E-value=49 Score=27.91 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=29.2
Q ss_pred cceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCC---------CEEEEEEe
Q 032303 85 VDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKW---------FEADLFFN 128 (143)
Q Consensus 85 ~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG---------~~gtW~V~ 128 (143)
..|-.|+|+|++.+...+......+.+|--|.-|++ -.|+|-|.
T Consensus 191 ~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~~H~~~~~e~~~vlyIR 243 (251)
T PF14499_consen 191 SNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHITHGIFITEDECVLYIR 243 (251)
T ss_dssp S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E------EESS-EEEEEE
T ss_pred CceEEEEEEeEEEEeecccCCCccccCCcccccCCcccccccccCCCEEEEEE
Confidence 689999999999997654433378999999999998 55666554
No 145
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=27.15 E-value=91 Score=21.61 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=16.2
Q ss_pred EEEEeCCC--eeeEEEcCCcEEEEcCCC
Q 032303 96 VRVVPEGS--QRYMRFLAGDLIRYPKWF 121 (143)
Q Consensus 96 V~vt~d~G--~~~~e~~AGDlv~fPkG~ 121 (143)
|+|.=.|| .+...+.|||.+.|| |+
T Consensus 29 VtV~Y~dG~~~PCrv~~PG~~~Tf~-Gy 55 (68)
T PF01356_consen 29 VTVEYTDGQEVPCRVIPPGDIATFP-GY 55 (68)
T ss_dssp EEEEETTS-CEEEEEE-TTEEEEEE--T
T ss_pred EEEEEeCCCcceeEEeCCCCEEEec-cc
Confidence 34444454 457889999999999 65
No 146
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=26.18 E-value=47 Score=25.33 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=13.3
Q ss_pred EEEcCCcEEEEcCCC
Q 032303 107 MRFLAGDLIRYPKWF 121 (143)
Q Consensus 107 ~e~~AGDlv~fPkG~ 121 (143)
..+.+||.+++|+.+
T Consensus 150 ~~L~~gD~I~Vp~~~ 164 (165)
T TIGR03027 150 VELKPGDVLIIPESW 164 (165)
T ss_pred ceeCCCCEEEEeccc
Confidence 689999999999864
No 147
>PHA02872 EFc gene family protein; Provisional
Probab=25.04 E-value=96 Score=23.69 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=32.1
Q ss_pred cceEEEEEEeEEEEE--------eCCCeeeEEEcCCcEEEEcCCCEEE--EEEecceEE
Q 032303 85 VDQLVYIEEGEVRVV--------PEGSQRYMRFLAGDLIRYPKWFEAD--LFFNGPYQE 133 (143)
Q Consensus 85 ~dE~~yILEG~V~vt--------~d~G~~~~e~~AGDlv~fPkG~~gt--W~V~e~vrK 133 (143)
..--+|+|||+.-+. +++.+..--+..|+-|-|..++.|- .-+..+..|
T Consensus 60 dtvkIYflEGkG~LIfSv~dv~sp~~eedSgyv~eG~~Vef~t~f~C~iTlacts~~Nt 118 (124)
T PHA02872 60 DTVKIYFLEGKGGLIFSVSDVGSPDNEEDSGYVNEGECVEFETDFACFITLACTSPINT 118 (124)
T ss_pred CeEEEEEEecCCcEEEEEEecCCCCccccccceecccEEEEecCceEEEEEEecCCcce
Confidence 345689999987553 2222222357899999999999984 444455544
No 148
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=24.10 E-value=1.3e+02 Score=22.02 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=32.6
Q ss_pred eeeeeecCceeeeee--ccceEEEEEEeEEEEEeC--CCee--eEEEcCCcEEEEcCCC
Q 032303 69 WSMWKTGKCKLPWDW--QVDQLVYIEEGEVRVVPE--GSQR--YMRFLAGDLIRYPKWF 121 (143)
Q Consensus 69 wgiWec~pg~f~~~y--~~dE~~yILEG~V~vt~d--~G~~--~~e~~AGDlv~fPkG~ 121 (143)
.....-.+|..-..- ..+-+++|++|.+.+.-. +|.+ ...+++||.|-...=+
T Consensus 23 ~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL 81 (214)
T ss_pred ceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh
Confidence 334444555433221 235588999999998865 4533 2357899998766533
No 149
>PRK10220 hypothetical protein; Provisional
Probab=24.00 E-value=56 Score=24.67 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=32.4
Q ss_pred ceeeeeecCceeeeeeccceEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCC
Q 032303 68 RWSMWKTGKCKLPWDWQVDQLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWF 121 (143)
Q Consensus 68 ~wgiWec~pg~f~~~y~~dE~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~ 121 (143)
.-..|-|+.+.+.|.-...+ --+....+.+.+|. .+..||.|++=|.+
T Consensus 17 d~~~~vCpeC~hEW~~~~~~---~~~~~~~vkDsnG~---~L~dGDsV~viKDL 64 (111)
T PRK10220 17 DNGMYICPECAHEWNDAEPA---QESDELIVKDANGN---LLADGDSVTIVKDL 64 (111)
T ss_pred CCCeEECCcccCcCCccccc---cccCCceEEcCCCC---CccCCCEEEEEeec
Confidence 34579999999988755311 11222456777786 48999999997654
No 150
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=23.06 E-value=2.1e+02 Score=24.58 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=39.3
Q ss_pred eeeeeecCcee-eeeeccceEEEE-EEeEEEEEeCCCe------e--eEEEcCCcEEEEcCCCEEEEEEecc
Q 032303 69 WSMWKTGKCKL-PWDWQVDQLVYI-EEGEVRVVPEGSQ------R--YMRFLAGDLIRYPKWFEADLFFNGP 130 (143)
Q Consensus 69 wgiWec~pg~f-~~~y~~dE~~yI-LEG~V~vt~d~G~------~--~~e~~AGDlv~fPkG~~gtW~V~e~ 130 (143)
..+|+=.+|.- .-.....|.|.| |+|+++|+..+.. + ..+=+|=|.|.+|+|-. |.+...
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~--~~vtA~ 100 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSA--FSVTAT 100 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCce--EEEEee
Confidence 45677777763 333456788865 7999999987632 1 12333779999999975 555444
No 151
>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr
Probab=22.55 E-value=1.4e+02 Score=19.01 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=4.4
Q ss_pred EcCCcEEEEc
Q 032303 109 FLAGDLIRYP 118 (143)
Q Consensus 109 ~~AGDlv~fP 118 (143)
+..||++++-
T Consensus 29 ~~~G~iv~~~ 38 (84)
T cd06462 29 PKRGDIVVFR 38 (84)
T ss_pred CcCCEEEEEE
Confidence 3444444443
No 152
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=22.12 E-value=1.3e+02 Score=28.72 Aligned_cols=65 Identities=18% Similarity=0.088 Sum_probs=40.0
Q ss_pred eEEecCCCHHHHhhcCCCceeeeeecCceeeeee--ccceEEEEEEeEEEEEeCC-Cee--eEEEcCCcEE
Q 032303 50 VRVERQVSPERLKELDVSRWSMWKTGKCKLPWDW--QVDQLVYIEEGEVRVVPEG-SQR--YMRFLAGDLI 115 (143)
Q Consensus 50 I~ve~~ps~~rl~~lGv~~wgiWec~pg~f~~~y--~~dE~~yILEG~V~vt~d~-G~~--~~e~~AGDlv 115 (143)
+-+=++.+++.+.++-.. ...-...||..=+.- ..++++.|++|+|.+...+ |.+ ...+++||.|
T Consensus 379 ~~lF~~~s~~~l~~L~~~-~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 379 VYLFKGVSREILLLLVTK-MKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred CcchhcCCHHHHHHHHHh-hheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 334456677777666321 122345677653332 2588999999999987543 322 2468999976
No 153
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=21.96 E-value=36 Score=23.79 Aligned_cols=31 Identities=35% Similarity=0.588 Sum_probs=21.2
Q ss_pred EEEEEeEEEEEeCCC-eeeEEEcCCcEEEEcC
Q 032303 89 VYIEEGEVRVVPEGS-QRYMRFLAGDLIRYPK 119 (143)
Q Consensus 89 ~yILEG~V~vt~d~G-~~~~e~~AGDlv~fPk 119 (143)
.+|.+|.|.|-.+-. .+-..+.+||.|-||.
T Consensus 32 ~~i~eg~V~vNGe~EtRRgkKlr~gd~V~i~~ 63 (73)
T COG2501 32 AFIAEGEVKVNGEVETRRGKKLRDGDVVEIPG 63 (73)
T ss_pred HHHHCCeEEECCeeeeccCCEeecCCEEEECC
Confidence 356788887765432 1124689999999985
No 154
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=21.44 E-value=1.1e+02 Score=21.00 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=21.9
Q ss_pred EEEeEEEEEeCCCeeeEEEcCCcEEEEcCCC
Q 032303 91 IEEGEVRVVPEGSQRYMRFLAGDLIRYPKWF 121 (143)
Q Consensus 91 ILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~ 121 (143)
|++|+-++|--.... ..+++||.+++-.+.
T Consensus 12 I~sG~Kt~t~R~~~~-~~~~~Gd~~~~~~~~ 41 (100)
T cd06552 12 ILSGKKTATIRDGGE-SHLKPGDVVEVHTGE 41 (100)
T ss_pred HHcCCCEEEEeCCCc-cCCCCCCEEEEEECC
Confidence 567887777766333 358999999988765
No 155
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=21.28 E-value=2e+02 Score=22.73 Aligned_cols=62 Identities=21% Similarity=0.168 Sum_probs=40.0
Q ss_pred Cceee-eeec----cceEEEEEEeEEEEEeCC---Cee------eEEEcC--CcEEEEcCCCEEEEEEecc-eEEEEEE
Q 032303 76 KCKLP-WDWQ----VDQLVYIEEGEVRVVPEG---SQR------YMRFLA--GDLIRYPKWFEADLFFNGP-YQERYSF 137 (143)
Q Consensus 76 pg~f~-~~y~----~dE~~yILEG~V~vt~d~---G~~------~~e~~A--GDlv~fPkG~~gtW~V~e~-vrK~Y~~ 137 (143)
+|..+ +||+ ...+++++.|++....-| +.+ .+++.+ +-++.+|+|+-=-.-+.+. ..=.|..
T Consensus 53 ~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 53 KGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred CCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 45543 5554 689999999998765433 211 367777 5599999998766665443 3334443
No 156
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=21.27 E-value=1.8e+02 Score=22.88 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=37.6
Q ss_pred Cceee-eeec-----cceEEEEEEeEEEEEeCC--------Ce-eeEEEcCCc--EEEEcCCCEEEEEEecce
Q 032303 76 KCKLP-WDWQ-----VDQLVYIEEGEVRVVPEG--------SQ-RYMRFLAGD--LIRYPKWFEADLFFNGPY 131 (143)
Q Consensus 76 pg~f~-~~y~-----~dE~~yILEG~V~vt~d~--------G~-~~~e~~AGD--lv~fPkG~~gtW~V~e~v 131 (143)
+|..+ +||+ ...++.++.|++....-| |. ..+++.+++ ++++|+|+-=-+.+.+.-
T Consensus 52 ~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 52 KGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp TTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred ccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 35543 5554 257999999988765433 32 136788886 799999998888877763
No 157
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=21.19 E-value=40 Score=23.31 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=10.0
Q ss_pred EEcCCcEEEEcC
Q 032303 108 RFLAGDLIRYPK 119 (143)
Q Consensus 108 e~~AGDlv~fPk 119 (143)
+++|||+++|..
T Consensus 51 ~~~pGDlif~~~ 62 (105)
T PF00877_consen 51 ELQPGDLIFFKG 62 (105)
T ss_dssp G-TTTEEEEEEG
T ss_pred cCCcccEEEEeC
Confidence 579999999988
No 158
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=21.04 E-value=1.3e+02 Score=20.31 Aligned_cols=16 Identities=13% Similarity=-0.056 Sum_probs=13.2
Q ss_pred EEEcCCcEEEEcCCCE
Q 032303 107 MRFLAGDLIRYPKWFE 122 (143)
Q Consensus 107 ~e~~AGDlv~fPkG~~ 122 (143)
.++.|||++.+.+|..
T Consensus 58 ~~~~aGdI~~v~~g~~ 73 (86)
T cd03699 58 DELSAGQVGYIIAGIK 73 (86)
T ss_pred ceECCCCEEEEEcccc
Confidence 6789999999988653
No 159
>PHA00672 hypothetical protein
Probab=21.03 E-value=2e+02 Score=22.55 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=29.3
Q ss_pred eEEEEEEeEEEEEeCCCeeeEEEcCCcEEEEcCCCEEEEE
Q 032303 87 QLVYIEEGEVRVVPEGSQRYMRFLAGDLIRYPKWFEADLF 126 (143)
Q Consensus 87 E~~yILEG~V~vt~d~G~~~~e~~AGDlv~fPkG~~gtW~ 126 (143)
|.+.|++|+++|..+++ . .++.+=-...=|+|.+-.-.
T Consensus 68 ~~~ii~sG~itV~tdge-~-~rl~g~~~i~~~aG~Kragy 105 (152)
T PHA00672 68 STVLIFSGHATVFIGGE-A-VELRGYHVIPASAGRKQAFV 105 (152)
T ss_pred eEEEEecccEEEEeCCc-E-EEEecceeeecCCCccccee
Confidence 45599999999998844 4 68888888888888764433
No 160
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=20.99 E-value=48 Score=20.99 Aligned_cols=12 Identities=33% Similarity=0.777 Sum_probs=9.8
Q ss_pred EEEcCCcEEEEc
Q 032303 107 MRFLAGDLIRYP 118 (143)
Q Consensus 107 ~e~~AGDlv~fP 118 (143)
..+.+||.+.|+
T Consensus 48 ~~l~~Gd~v~i~ 59 (59)
T TIGR02988 48 KKLYPGDVIEIP 59 (59)
T ss_pred CCCCCCCEEEeC
Confidence 478899999875
No 161
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=20.85 E-value=1.6e+02 Score=22.03 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=24.0
Q ss_pred EEEcCCcEEEEcCCCEEEEEEecceEE--EEEEE
Q 032303 107 MRFLAGDLIRYPKWFEADLFFNGPYQE--RYSFR 138 (143)
Q Consensus 107 ~e~~AGDlv~fPkG~~gtW~V~e~vrK--~Y~~~ 138 (143)
+.-.+|++++|+.+....|+-..++.+ +|.+.
T Consensus 141 v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~ 174 (178)
T smart00702 141 VKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAIT 174 (178)
T ss_pred EeCCCCcEEEEeCCCCCccccCCcceeCCEEEEE
Confidence 677899999999987667777777764 55543
No 162
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=20.46 E-value=1.8e+02 Score=20.13 Aligned_cols=15 Identities=13% Similarity=0.033 Sum_probs=7.7
Q ss_pred EEcCCCEEEEEEecc
Q 032303 116 RYPKWFEADLFFNGP 130 (143)
Q Consensus 116 ~fPkG~~gtW~V~e~ 130 (143)
.+.+|...+|.+.++
T Consensus 63 ~~~~G~~~~~tF~~~ 77 (99)
T PF00127_consen 63 LLAPGETYSVTFTKP 77 (99)
T ss_dssp EBSTTEEEEEEEESS
T ss_pred ecCCCCEEEEEeCCC
Confidence 344555555555543
No 163
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=20.10 E-value=1.7e+02 Score=20.34 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=11.0
Q ss_pred EEEcCCCEEEEEEecc
Q 032303 115 IRYPKWFEADLFFNGP 130 (143)
Q Consensus 115 v~fPkG~~gtW~V~e~ 130 (143)
+.+.+|-+.+|.+..+
T Consensus 62 ~~~~pG~t~~~tF~~~ 77 (99)
T TIGR02656 62 LLNSPGESYEVTFSTP 77 (99)
T ss_pred cccCCCCEEEEEeCCC
Confidence 4567777777777764
Done!