BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032304
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 228 bits (581), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 117/133 (87%)
Query: 8 FVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 67
+ PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEEYPMAAPKVRF+TKI
Sbjct: 19 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 78
Query: 68 YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
YHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+
Sbjct: 79 YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 138
Query: 128 AVETAKEWTRLYA 140
A+ETA+ WTRLYA
Sbjct: 139 AIETARAWTRLYA 151
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 228 bits (580), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 117/133 (87%)
Query: 8 FVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 67
+ PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEEYPMAAPKVRF+TKI
Sbjct: 16 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 75
Query: 68 YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
YHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+
Sbjct: 76 YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135
Query: 128 AVETAKEWTRLYA 140
A+ETA+ WTRLYA
Sbjct: 136 AIETARAWTRLYA 148
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 228 bits (580), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 117/133 (87%)
Query: 8 FVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 67
+ PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEEYPMAAPKVRF+TKI
Sbjct: 18 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 77
Query: 68 YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
YHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+
Sbjct: 78 YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 137
Query: 128 AVETAKEWTRLYA 140
A+ETA+ WTRLYA
Sbjct: 138 AIETARAWTRLYA 150
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 228 bits (580), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 117/133 (87%)
Query: 8 FVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 67
+ PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEEYPMAAPKVRF+TKI
Sbjct: 21 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 80
Query: 68 YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
YHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+
Sbjct: 81 YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 140
Query: 128 AVETAKEWTRLYA 140
A+ETA+ WTRLYA
Sbjct: 141 AIETARAWTRLYA 153
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 228 bits (580), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 117/133 (87%)
Query: 8 FVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 67
+ PGI A P E N RYF+V+I GP SP+EGG FKLELFLPEEYPMAAPKVRF+TKI
Sbjct: 14 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 73
Query: 68 YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
YHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+
Sbjct: 74 YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 133
Query: 128 AVETAKEWTRLYA 140
A+ETA+ WTRLYA
Sbjct: 134 AIETARAWTRLYA 146
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 201 bits (512), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 91/131 (69%), Positives = 110/131 (83%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++YPM APKVRFLTKIYH
Sbjct: 20 DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH 79
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAV 129
PNID+LGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL+ ++A+ W NE A
Sbjct: 80 PNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAK 139
Query: 130 ETAKEWTRLYA 140
A+EWT+LYA
Sbjct: 140 AKAREWTKLYA 150
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 201 bits (512), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 91/132 (68%), Positives = 110/132 (83%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++YPM APKVRFLTKIYH
Sbjct: 18 DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH 77
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAV 129
PNID+LGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL+ ++A+ W NE A
Sbjct: 78 PNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAK 137
Query: 130 ETAKEWTRLYAS 141
A+EWT+LYA
Sbjct: 138 AKAREWTKLYAK 149
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 90/132 (68%), Positives = 109/132 (82%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++YPM APKVRFLTKIYH
Sbjct: 18 DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH 77
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAV 129
PNID+LGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DPL+ ++A+ W NE A
Sbjct: 78 PNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAK 137
Query: 130 ETAKEWTRLYAS 141
A+EWT+LYA
Sbjct: 138 AKAREWTKLYAK 149
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 196 bits (499), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 108/130 (83%)
Query: 13 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
PGI A P +N R+FN++I GP +PYEGG +KLELFLPE+YPM PKVRFLTKIYHPNI
Sbjct: 19 PGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI 78
Query: 73 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETA 132
DKLGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL +A+H+K ++ +A A
Sbjct: 79 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVA 138
Query: 133 KEWTRLYASG 142
++W ++YA+
Sbjct: 139 RQWNKIYANN 148
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 196 bits (499), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 108/130 (83%)
Query: 13 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
PGI A P +N R+FN++I GP +PYEGG +KLELFLPE+YPM PKVRFLTKIYHPNI
Sbjct: 19 PGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI 78
Query: 73 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETA 132
DKLGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL +A+H+K ++ +A A
Sbjct: 79 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVA 138
Query: 133 KEWTRLYASG 142
++W ++YA+
Sbjct: 139 RQWNKIYANN 148
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 195 bits (495), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 89/132 (67%), Positives = 108/132 (81%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++YPM APKVRFLTKIYH
Sbjct: 18 DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH 77
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAV 129
P ID+LGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DPL+ ++A+ W NE A
Sbjct: 78 PAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAK 137
Query: 130 ETAKEWTRLYAS 141
A+EWT+LYA
Sbjct: 138 AKAREWTKLYAK 149
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 145 bits (367), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 87/131 (66%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D SA P D+M ++ I+GP SPY GGVF L + P +YP PKV F TKIYH
Sbjct: 36 DPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH 95
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAV 129
PNI+ G ICLDILKD+WSPAL I VLLSI +LL+ PNPDDPL IA +K++
Sbjct: 96 PNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYD 155
Query: 130 ETAKEWTRLYA 140
+TA+EW++ YA
Sbjct: 156 QTAREWSQKYA 166
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 145 bits (367), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 90/125 (72%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D++ ++ I GP SPY+GG+F L++ P +YP AP+V F+TK+YHPNI+K
Sbjct: 25 SAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKN 84
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDILKD+WSPAL + VLLSI +LL+ PNP DPL +A + N+ + +TA+EW
Sbjct: 85 GVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREW 144
Query: 136 TRLYA 140
TR+YA
Sbjct: 145 TRMYA 149
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 86/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D++ ++ I+GP SPY GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 22 SAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSN 81
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+D+WSPAL I VLLSI +LL+ PNPDDPL IA +KT+ + +A+EW
Sbjct: 82 GSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREW 141
Query: 136 TRLYA 140
TR YA
Sbjct: 142 TRKYA 146
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 27 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 86
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 87 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 146
Query: 136 TRLYA 140
T+ YA
Sbjct: 147 TQKYA 151
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 136 TRLYA 140
T+ YA
Sbjct: 144 TQKYA 148
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 40 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 99
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 100 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 159
Query: 136 TRLYA 140
T+ YA
Sbjct: 160 TQKYA 164
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 136 TRLYA 140
T+ YA
Sbjct: 144 TQKYA 148
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 81
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 82 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 141
Query: 136 TRLYA 140
T+ YA
Sbjct: 142 TQKYA 146
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 86/131 (65%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D SA P D++ ++ I+GP SPY GGVF L + P +YP PK+ F TKIYH
Sbjct: 17 DPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYH 76
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAV 129
PNI+ G ICLDILKD+WSPAL + VLLSI +LL+ NPDDPL IA +KT+ +
Sbjct: 77 PNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYE 136
Query: 130 ETAKEWTRLYA 140
TA+EWT+ YA
Sbjct: 137 ATAREWTKKYA 147
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 32 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 91
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EW
Sbjct: 92 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 151
Query: 136 TRLYA 140
T+ YA
Sbjct: 152 TQKYA 156
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 86/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D++ ++ I+GP +SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 25 SAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 84
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 85 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREW 144
Query: 136 TRLYA 140
T+ YA
Sbjct: 145 TQKYA 149
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 21 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 80
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EW
Sbjct: 81 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 140
Query: 136 TRLYA 140
T+ YA
Sbjct: 141 TQKYA 145
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EW
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 143
Query: 136 TRLYA 140
T+ YA
Sbjct: 144 TQKYA 148
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 32 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 91
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ ++T+ + A+EW
Sbjct: 92 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREW 151
Query: 136 TRLYA 140
T+ YA
Sbjct: 152 TQKYA 156
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 30 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 89
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EW
Sbjct: 90 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 149
Query: 136 TRLYA 140
T+ YA
Sbjct: 150 TQKYA 154
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 84/125 (67%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +W PAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 84 GSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 136 TRLYA 140
T+ YA
Sbjct: 144 TQKYA 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 139 bits (350), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 84 GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 136 TRLYASGA 143
T+ YA G
Sbjct: 144 TQKYAMGG 151
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 139 bits (350), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 87/125 (69%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D++ ++ I+GP+ SPY+GGVF L + P +YP PKV F TKIYHPNI+
Sbjct: 27 SAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSN 86
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA +K+++ + A+EW
Sbjct: 87 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREW 146
Query: 136 TRLYA 140
T+ YA
Sbjct: 147 TQKYA 151
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 84/125 (67%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLD L+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 84 GSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 136 TRLYA 140
T+ YA
Sbjct: 144 TQKYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 84/125 (67%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ +GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 24 SAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 83
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 84 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 143
Query: 136 TRLYA 140
T+ YA
Sbjct: 144 TQKYA 148
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 86/132 (65%), Gaps = 4/132 (3%)
Query: 13 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
PGI+ +D M ILG +PYE GVFKLE+ +PE YP P++RFLT IYHPNI
Sbjct: 22 PGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81
Query: 73 DKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEA 128
D GRICLD+L K W P+L I TVL SIQ L+S PNPDDPL +I+ +K N+
Sbjct: 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAF 141
Query: 129 VETAKEWTRLYA 140
++ A++WT +A
Sbjct: 142 LKNARQWTEKHA 153
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 85/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 21 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 80
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G I LDIL+ +WSPAL+I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 81 GSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 140
Query: 136 TRLYA 140
T+ YA
Sbjct: 141 TQKYA 145
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 137 bits (344), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 84/125 (67%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 25 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 84
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 85 GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 144
Query: 136 TRLYA 140
T+ YA
Sbjct: 145 TQKYA 149
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 84/125 (67%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 40 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 99
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EW
Sbjct: 100 GSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW 159
Query: 136 TRLYA 140
T+ YA
Sbjct: 160 TQKYA 164
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 135 bits (341), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 85/133 (63%)
Query: 9 VDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY 68
+D P SA P DN+ + ILGP S YEGGVF L++ EYP PKV F T+IY
Sbjct: 62 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY 121
Query: 69 HPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEA 128
H NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL +IA + TN AE
Sbjct: 122 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH 181
Query: 129 VETAKEWTRLYAS 141
A++WT+ YA+
Sbjct: 182 DRMARQWTKRYAT 194
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 135 bits (341), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 84/125 (67%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHPNI+
Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 81
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EW
Sbjct: 82 GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141
Query: 136 TRLYA 140
T+ YA
Sbjct: 142 TQKYA 146
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 85/133 (63%)
Query: 9 VDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY 68
+D P SA P DN+ + ILGP S YEGGVF L++ +YP PKV F T+IY
Sbjct: 17 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIY 76
Query: 69 HPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEA 128
H NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL +IA + TN AE
Sbjct: 77 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH 136
Query: 129 VETAKEWTRLYAS 141
A++WT+ YA+
Sbjct: 137 DRMARQWTKRYAT 149
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
Query: 15 ISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID- 73
I A + N + I GP +PYEGG F L + +P +YP PK++F+TKI+HPNI
Sbjct: 43 IDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISS 102
Query: 74 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAK 133
+ G ICLD+LK++WSPAL IRT LLSIQALLS P PDDP +AK +K N A V+TA
Sbjct: 103 QTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTAS 162
Query: 134 EWTRLYASG 142
WT+ +A+G
Sbjct: 163 VWTKTFATG 171
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 86/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D++ ++ I+GP S Y+GGVF L + P +YP PK+ F TKIYHPNI+
Sbjct: 40 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 99
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA+ +K+++ + A+EW
Sbjct: 100 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREW 159
Query: 136 TRLYA 140
T+ YA
Sbjct: 160 TQKYA 164
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 86/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D++ ++ I+GP S Y+GGVF L + P +YP PK+ F TKIYHPNI+
Sbjct: 24 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 83
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA+ +K+++ + A+EW
Sbjct: 84 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREW 143
Query: 136 TRLYA 140
T+ YA
Sbjct: 144 TQKYA 148
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 86/125 (68%)
Query: 16 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
SA P D++ ++ I+GP S Y+GGVF L + P +YP PK+ F TKIYHPNI+
Sbjct: 28 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSN 87
Query: 76 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 135
G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA+ +K+++ + A+EW
Sbjct: 88 GSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREW 147
Query: 136 TRLYA 140
T+ YA
Sbjct: 148 TQKYA 152
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 132 bits (332), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 82/124 (66%)
Query: 17 ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 76
A P D+M ++ I+GP SPY+GGVF L + P +YP PKV F T+IYHP I+ G
Sbjct: 23 AGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNG 82
Query: 77 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 136
I LDIL+ +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EWT
Sbjct: 83 SISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWT 142
Query: 137 RLYA 140
+ YA
Sbjct: 143 QKYA 146
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 128 bits (322), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 84/124 (67%)
Query: 17 ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 76
A P D++ ++ I+GP S Y+GGVF L + P +YP PK+ F TKIYHPNI+ G
Sbjct: 29 AGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNG 88
Query: 77 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 136
I LDIL+ +WSPAL + VLLSI +LL PNPDDPL +IA+ +K+++ + A+EWT
Sbjct: 89 SIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWT 148
Query: 137 RLYA 140
+ YA
Sbjct: 149 QKYA 152
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Query: 11 TAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHP 70
T+ G+SA ++ + I GP +PYEGG F L++ +P +YP PK++F+TKI+HP
Sbjct: 61 TSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHP 120
Query: 71 NID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAV 129
NI + G ICLDILK +WSPAL IRT LLSIQA+L+ P P DP +AK N V
Sbjct: 121 NISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFV 180
Query: 130 ETAKEWTRLYA 140
+TAK WT +A
Sbjct: 181 QTAKLWTETFA 191
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
Query: 20 SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRI 78
SE ++ + LGP +PYEGG F +++ +P EYP PK++F TK+YHPNI + G I
Sbjct: 27 SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 86
Query: 79 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 138
CLDILK+ WSP + +++ L+S+QALL +P P+DP +A+H+ + +TA WTRL
Sbjct: 87 CLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 146
Query: 139 YAS 141
YAS
Sbjct: 147 YAS 149
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
Query: 20 SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRI 78
SE ++ + LGP +PYEGG F +++ +P EYP PK++F TK+YHPNI + G I
Sbjct: 28 SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 87
Query: 79 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 138
CLDIL++ WSP + +++ L+S+QALL +P P+DP +A+H+ + +TA WTRL
Sbjct: 88 CLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 147
Query: 139 YAS 141
YAS
Sbjct: 148 YAS 150
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 83/125 (66%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D PG+SASP DN+ +N MI+GP +PYE G F+L L EEYP P V+FL++++H
Sbjct: 19 DAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH 78
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAV 129
PN+ G ICLDIL+++W+P + ++L SIQ+L + PNP P + A +K ++++ V
Sbjct: 79 PNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYV 138
Query: 130 ETAKE 134
+ KE
Sbjct: 139 KRVKE 143
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 78/114 (68%)
Query: 14 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 73
G+S +PSE+N+ +N +I GP +P+E G FKL + EEYP P VRFL+K++HPN+
Sbjct: 23 GVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVY 82
Query: 74 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
G ICLDIL+++WSP + ++L SIQ+LL PNP+ P + A+ ++ N+ E
Sbjct: 83 ADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 116 bits (290), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 77/118 (65%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D G+S +P+EDN+ + +I GP ++P+E G FKL L EEYP P V+F++K++H
Sbjct: 19 DPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFH 78
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
PN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P + A+ ++ N E
Sbjct: 79 PNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 116 bits (290), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 77/118 (65%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D G+S +P+EDN+ + +I GP ++P+E G FKL L EEYP P V+F++K++H
Sbjct: 22 DPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFH 81
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
PN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P + A+ ++ N E
Sbjct: 82 PNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 139
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 77/118 (65%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D GIS +P ++N+ +N +I GP +P++GG FKL L E+YP P VRF+++++H
Sbjct: 19 DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH 78
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
PNI G ICLDIL+++WSP + +L SIQ+LL PNP+ P + A+ + ++ E
Sbjct: 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKRE 136
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRIC 79
++N I GP +PYEGG ++LE+ +PE YP PKVRF+TKI+HPNI + G IC
Sbjct: 50 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 109
Query: 80 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 139
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K N +TA+ W +Y
Sbjct: 110 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 169
Query: 140 ASG 142
A
Sbjct: 170 AGA 172
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRIC 79
++N I GP +PYEGG ++LE+ +PE YP PKVRF+TKI+HPNI + G IC
Sbjct: 86 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 145
Query: 80 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 139
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K N +TA+ W +Y
Sbjct: 146 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 205
Query: 140 ASG 142
A
Sbjct: 206 AGA 208
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRIC 79
++N I GP +PYEGG ++LE+ +PE YP PKVRF+TKI+HPNI + G IC
Sbjct: 35 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 94
Query: 80 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 139
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K N +TA+ W +Y
Sbjct: 95 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 154
Query: 140 ASG 142
A
Sbjct: 155 AGA 157
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRIC 79
++N I GP +PYEGG ++LE+ +PE YP PKVRF+TKI+HPNI + G IC
Sbjct: 34 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 93
Query: 80 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 139
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K N +TA+ W +Y
Sbjct: 94 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 153
Query: 140 ASG 142
A
Sbjct: 154 AGA 156
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRIC 79
++N I GP +PYEGG ++LE+ +PE YP PKVRF+TKI+HPNI + G IC
Sbjct: 37 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAIC 96
Query: 80 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 139
LDILKD+W+ A+ +RTVLLS+QALL+A PDDP +A +K N +TA+ W +Y
Sbjct: 97 LDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 156
Query: 140 ASG 142
A
Sbjct: 157 AGA 159
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 71/119 (59%)
Query: 4 LIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRF 63
L+ + GISA P DN+ + I G + YE +KL L P YP AP V+F
Sbjct: 39 LMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98
Query: 64 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 122
LT YHPN+D G I LDILK+KWS +RT+LLSIQ+LL PN D PL+ + A+ WK
Sbjct: 99 LTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 78/131 (59%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D GI P+E+++ V I GP +PY GG+F+++L L +++P + PK FLTKI+H
Sbjct: 28 DPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH 87
Query: 70 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAV 129
PN+ G IC+++LK W+ L IR VLL+I+ LL PNP+ L+E + N E
Sbjct: 88 PNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYA 147
Query: 130 ETAKEWTRLYA 140
A+ T ++
Sbjct: 148 ARARLLTEIHG 158
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 13 PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
PGI+A P DN+ + + GP + YE +KL L P +YP P V+F T +HPN+
Sbjct: 27 PGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV 86
Query: 73 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 127
D+ G ICLDILK+ W+ + +RT+LLS+Q+LL PN PL+ A W +N+ E
Sbjct: 87 DQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTE 140
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 78/125 (62%), Gaps = 14/125 (11%)
Query: 14 GISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
G SA +DN Y + V+I+GP + YEGGVFK L P++YP+ PK++F+T+I+HPN+
Sbjct: 36 GFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 95
Query: 73 DKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
DK G +C+ IL +++W P + T+++S+ ++L+ PN D P + + AK
Sbjct: 96 DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAK 155
Query: 120 HWKTN 124
W+ +
Sbjct: 156 EWRED 160
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 27 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKD 85
F+VM GP + YEGG++K+ + LP++YP A+P + F+ K+ HPN+D+ G +CLD++
Sbjct: 31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
Query: 86 KWSPALQIRTVL-LSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 141
W+P + V + + LL+ PNP DPL+ + A ++ E KE+ +LYAS
Sbjct: 91 TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYAS 147
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 31 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSP 89
++ P PY+ G F++E+ P EYP PK+ F TKIYHPNID+ G++CL ++ + W P
Sbjct: 38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKP 97
Query: 90 ALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 141
A + V+ S+ AL++ P P+ PL ++A+ + + + + A+E+T+ Y
Sbjct: 98 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 31 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSP 89
++ P PY+ G F++E+ P EYP PK+ F TKIYHPNID+ G++CL ++ + W P
Sbjct: 40 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKP 99
Query: 90 ALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 141
A + V+ S+ AL++ P P+ PL ++A+ + + + + A+E+T+ Y
Sbjct: 100 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 151
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 14/138 (10%)
Query: 14 GISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
G SA +DN Y + V+++GP + YEGG FK L P +YP PK++F+++I+HPNI
Sbjct: 22 GFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI 81
Query: 73 DKLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
DK G +C+ IL D +W P + T+LLS+ ++L+ PN + P + + AK
Sbjct: 82 DKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAK 141
Query: 120 HWKTNEAEAVETAKEWTR 137
+ N AE + + R
Sbjct: 142 MQRENYAEFKKKVAQCVR 159
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 27 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKD 85
F V GP +PYEGGV+K+ + LP++YP +P + F+ KI+HPNID+ G +CLD++
Sbjct: 53 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ 112
Query: 86 KWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 141
W+ + + S + LL+ PNP DPL+ + A + E + KE+ + YA+
Sbjct: 113 TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 14/138 (10%)
Query: 10 DTAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY 68
D+ PGI A P SE+N+ ++ +I GP +PY GVF +L P++YP++ PK+ F I
Sbjct: 19 DSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSIL 78
Query: 69 HPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSE 115
HPNI G +C+ IL +++WSP + +LLS+ ++LS PN + +
Sbjct: 79 HPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANI 138
Query: 116 NIAKHWKTNEAEAVETAK 133
+ W+ N E K
Sbjct: 139 DACILWRDNRPEFERQVK 156
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 30 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSP 89
+I+ P + Y G L E YP+ PKV L KI+HPNID G +CL+IL++ WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 90 ALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 143
AL +++++ + L PNP+DPL+++ AK E E E RL SG
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEA----VRLTMSGG 177
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 14/135 (10%)
Query: 14 GISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
GI A P +E+N + +I+GP + +E GVF L P +YP++ PK+RF +++HPNI
Sbjct: 28 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 87
Query: 73 DKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
GR+C+ IL ++WSP + +LLS+ ++L+ PN + + + +K
Sbjct: 88 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 147
Query: 120 HWKTNEAEAVETAKE 134
W+ + + + AK+
Sbjct: 148 MWRDDREQFYKIAKQ 162
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 14/135 (10%)
Query: 14 GISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
GI A P +E+N + +I+GP + +E GVF L P +YP++ PK+RF +++HPNI
Sbjct: 22 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81
Query: 73 DKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
GR+C+ IL ++WSP + +LLS+ ++L+ PN + + + +K
Sbjct: 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 141
Query: 120 HWKTNEAEAVETAKE 134
W+ + + + AK+
Sbjct: 142 MWRDDREQFYKIAKQ 156
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 14/135 (10%)
Query: 14 GISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
GI A P +E+N + +I+GP + +E GVF L P +YP++ PK+RF +++HPNI
Sbjct: 25 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 84
Query: 73 DKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
GR+C+ IL ++WSP + +LLS+ ++L+ PN + + + +K
Sbjct: 85 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 144
Query: 120 HWKTNEAEAVETAKE 134
W+ + + + AK+
Sbjct: 145 MWRDDREQFYKIAKQ 159
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 14/135 (10%)
Query: 14 GISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 72
GI A P +E+N + +I+GP + +E GVF L P +YP++ PK+RF +++HPNI
Sbjct: 26 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 85
Query: 73 DKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
GR+C+ IL ++WSP + +LLS+ ++L+ PN + + + +K
Sbjct: 86 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 145
Query: 120 HWKTNEAEAVETAKE 134
W+ + + + AK+
Sbjct: 146 MWRDDREQFYKIAKQ 160
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+ + I G +P+EGG+FKL + ++YP + PK
Sbjct: 18 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 77
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 78 CKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 137
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 138 TIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+ + I G +P+EGG+FKL + ++YP + PK
Sbjct: 16 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 75
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 76 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 135
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 136 TIYCQNRVEYEKRVRAQAKKFA 157
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSEDNMRYFNVM-----ILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+M I G +P+EGG+FKL + ++YP + PK
Sbjct: 17 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 76
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 77 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 136
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 137 TIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+ + I G +P+EGG+FKL + ++YP + PK
Sbjct: 17 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 76
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 77 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 136
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 137 TIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+ + I G +P+EGG+FKL + ++YP + PK
Sbjct: 15 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 74
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 75 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 134
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 135 TIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSEDNMRYFNVM-----ILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+M I G +P+EGG+FKL + ++YP + PK
Sbjct: 20 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 79
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 80 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 139
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 140 TIYCQNRVEYEKRVRAQAKKFA 161
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+ + I G +P+EGG+FKL + ++YP + PK
Sbjct: 18 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 77
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 78 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 137
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 138 TIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 80
E ++ + V I GP + YEGG FK L P +YP + P RFLTK++HPNI + G +C+
Sbjct: 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCI 93
Query: 81 DIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTN 124
IL ++W+P +RT+LLS+ +LL+ PN P + + + + WK +
Sbjct: 94 SILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES 153
Query: 125 EAEAVE 130
+ + E
Sbjct: 154 KGKDRE 159
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 80
E ++ + V I GP + YEGG FK L P +YP + P RFLTK++HPNI + G +C+
Sbjct: 31 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCI 90
Query: 81 DILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTN 124
IL ++W+P +RT+LLS+ +LL+ PN P + + + + WK +
Sbjct: 91 SILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES 150
Query: 125 EAEAVE 130
+ + E
Sbjct: 151 KGKDRE 156
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 15 ISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK 74
IS S +D + + +++ P + Y+ G F + + YP PKV+ T +YHPNID
Sbjct: 26 ISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDL 83
Query: 75 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 124
G +CL+IL++ W P L I +++ +Q L PNP+DPL++ A+ + N
Sbjct: 84 EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 133
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSEDNMRYFNVM-----ILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+M I G +P+EGG+FKL + ++YP + PK
Sbjct: 18 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 77
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HP + G +CL IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 78 CKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 137
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 138 TIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 7 WFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKV 61
W D G A P + ++ + V I G ++ +EGG++KL + PEEYP PK
Sbjct: 22 WRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKC 81
Query: 62 RFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
RF ++HPN+ G +CL IL ++ W PA+ I+ +LL IQ LL PN P
Sbjct: 82 RFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYT 141
Query: 120 HWKTNEAEAVETAKEWTR 137
+K ++ E + + R
Sbjct: 142 MFKKDKVEYEKRVRAQAR 159
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+ + I G +P+EGG+FKL + ++YP + PK
Sbjct: 18 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 77
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN P
Sbjct: 78 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAY 137
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 138 TIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+ + I G +P+EGG+FKL + ++YP + PK
Sbjct: 18 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 77
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN P
Sbjct: 78 CKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAY 137
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 138 TIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 7 WFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKV 61
W D G A P + +++ + I G + + GGV+ + + P EYP PKV
Sbjct: 18 WRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKV 77
Query: 62 RFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
+F YHPN+ G ICL IL + W PA+ ++ ++L +Q LL +PNP+ P E +
Sbjct: 78 KFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWR 137
Query: 120 HWKTNEAE 127
+ N+AE
Sbjct: 138 SFSRNKAE 145
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSEDNMRYFNVM-----ILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+M I G +P+EGG+FKL + ++YP + PK
Sbjct: 15 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 74
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G + L IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 75 CKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 134
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 135 TIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 6 VWFVDTAPGISASPSEDNMRYFNVM-----ILGPTQSPYEGGVFKLELFLPEEYPMAAPK 60
W D G A P+++ N+M I G +P+EGG+FKL + ++YP + PK
Sbjct: 15 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPK 74
Query: 61 VRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 118
+F ++HPN+ G + L IL++ W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 75 CKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAY 134
Query: 119 KHWKTNEAEAVETAKEWTRLYA 140
+ N E + + + +A
Sbjct: 135 TIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 7 WFVDTAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKV 61
W D G A P + +++ + I G + + GGV+ + + P EYP PKV
Sbjct: 16 WRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKV 75
Query: 62 RFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
+F YHPN+ G ICL IL + W PA+ ++ ++L +Q LL +PNP+ P E +
Sbjct: 76 KFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWR 135
Query: 120 HWKTNEAE 127
+ N+AE
Sbjct: 136 SFSRNKAE 143
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 31 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSP 89
+L P Q PY F L + P EYP P ++F TKIYHPN+D+ G+ICL I+ + W P
Sbjct: 37 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKP 96
Query: 90 ALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 136
+ VL ++ L++ PN +PL ++A N + A+E+T
Sbjct: 97 CTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT 143
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICL 80
D + F V GP +PYE G + L + LP +YP +P + F +I HPN+D + G +CL
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 81 DILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSENIAK 119
D++ W+P Q+ + + + LL PNP DPL+ A
Sbjct: 95 DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAH 134
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 31 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSP 89
+L P Q PY F L + P EYP P ++F TKIYHPN+D+ G+ICL I+ + W P
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKP 99
Query: 90 ALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 136
+ VL ++ L++ PN +PL ++A N + A+E+T
Sbjct: 100 CTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT 146
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 15 ISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK 74
IS S +D + + +++ P + Y+ G F + + YP PKV+ T +YHPNID
Sbjct: 46 ISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 103
Query: 75 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 124
G + L+IL++ W P L I +++ +Q L PNP+DPL++ A+ + N
Sbjct: 104 EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 153
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 19 PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRI 78
P + + F + + P + Y+GG F+ E +P+ Y M PKV+ LTKI+HPNI + G I
Sbjct: 39 PDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEI 97
Query: 79 CLDILKDK------WSPALQIRTVLLSIQALLSA-PNPDDPLSENIAKHWKTNEAEAVET 131
CL +L++ W+P ++ V+ + +L + N DDPL+ A+H ++ +
Sbjct: 98 CLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNK 157
Query: 132 AKEWTRLYASGA 143
++ + YA
Sbjct: 158 VDDYIKRYARSG 169
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 19 PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRI 78
P + + F + + P + Y+GG F+ E +P+ Y M PKV+ LTKI+HPNI + G I
Sbjct: 39 PDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEI 97
Query: 79 CLDILKDK------WSPALQIRTVLLSIQALLSA-PNPDDPLSENIAKHWKTNEAEAVET 131
CL +L++ W+P ++ V+ + +L + N DDPL+ A+H ++ +
Sbjct: 98 CLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNK 157
Query: 132 AKEWTRLYA 140
++ + YA
Sbjct: 158 VDDYIKRYA 166
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 14 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 73
GI+A P ++M + V I G S ++G VF+L + EY A P V+F+T +HPN+D
Sbjct: 42 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 74 -KLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 119
G+ C+D L + KW+ + ++LL++Q +LS P ++P++ A+
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 150
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNIDK-LGRI 78
E ++ + +I GP+ +PYE F++ + +P YPM PK+ F+ I H N+ G I
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEI 103
Query: 79 CLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVE 130
CL+ILK ++W+P + + ++ LL P D PL +I + + A +
Sbjct: 104 CLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNIDK-LGRI 78
E ++ + +I GP+ +PYE F++ + +P YPM PK+ F+ I H N+ G I
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEI 103
Query: 79 CLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVE 130
CL+ILK ++W+P + + ++ LL P D PL +I + + A +
Sbjct: 104 CLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNIDK-LGRI 78
E ++ + +I GP+ +PYE F++ + +P YPM PK+ F+ I H N+ G I
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEI 103
Query: 79 CLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVE 130
CL+ILK ++W+P + + ++ LL P D PL +I + + A +
Sbjct: 104 CLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQ 156
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH-----PNIDKL 75
E+ + V+I GP +PY G F+ +++ P++YP + P V T H PN+
Sbjct: 106 EERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYND 165
Query: 76 GRICLDIL-------KDKWSPAL-QIRTVLLSIQALLSAPNP 109
G++CL IL ++KW+P VL+S+Q+L+ P
Sbjct: 166 GKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK-IYHPNIDKLGRICL 80
+N+R + V +G + Y V+KL++ P++YP+ P V FL K H ++ G ICL
Sbjct: 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL 92
Query: 81 DILKDKWSPALQIRTVLLSIQALLSA 106
+L D ++P+L I ++LSI ++LS+
Sbjct: 93 SLLGDDYNPSLSISGLVLSIISMLSS 118
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 15 ISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK-IYHPNID 73
I PS N+R + V +G + Y V+K+++ P+ YP+ P V FL K H ++
Sbjct: 42 IDVHPS--NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVY 99
Query: 74 KLGRICLDILKDKWSPALQIRTVLLSIQALLSA 106
G ICL +L D ++P+L I ++LSI ++LS+
Sbjct: 100 SNGDICLSVLGDDYNPSLSISGLILSIISMLSS 132
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 39 YEGGVFKLELFLPEEYPMAAPKVRFLTKI--YHPNIDKLGRICLDILKDKWSPALQIRTV 96
YEG F+L YP +P+V F + HP++ G ICL IL + WSPAL +++V
Sbjct: 68 YEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSV 127
Query: 97 LLSIQALLS 105
LSI ++LS
Sbjct: 128 CLSIISMLS 136
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 10 DTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69
D P I A P N+ ++ ++ GP +PYEGG + +L P E+P P + +T
Sbjct: 29 DPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT---- 84
Query: 70 PN--IDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 109
PN R+CL D D W+PA + T+L + + + P
Sbjct: 85 PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 31 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC---LDILKDKW 87
I G + +E ++ L +F + YP + P V+F TKI +D GR+ L ILK+ W
Sbjct: 61 IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-W 119
Query: 88 SPALQIRTVLLSI-QALLSAPNPDDP 112
+ I T+L+S+ Q +LS+ N P
Sbjct: 120 NRNYTIETILISLRQEMLSSANKRLP 145
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 31 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC---LDILKDKW 87
I G + +E ++ L +F + YP + P V+F TKI +D GR+ L ILK+ W
Sbjct: 65 IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-W 123
Query: 88 SPALQIRTVLLSI-QALLSAPNPDDP 112
+ I T+L+S+ Q +LS+ N P
Sbjct: 124 NRNYTIETILISLRQEMLSSANKRLP 149
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 31 ILGPTQSPY--EGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWS 88
+ P S Y G ++L + ++YP P VRF+T +Y P + G IC ++ D W+
Sbjct: 56 VKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWT 115
Query: 89 PALQ----IRTVLLSIQALLSAPNPDDPLSENIAKHW 121
P I+ VL + + + DD E A+H+
Sbjct: 116 PDQHASDVIKLVLDRVFSQYKSRRDDDVNPE--ARHY 150
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 24 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDI 82
M +N ILGP S +E ++ L + YP + PKV F++KI P ++ G + D
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
Query: 83 --LKDKWSPALQIRTVLLSIQALLSAP 107
L+D W A + T+LL ++ ++ P
Sbjct: 99 HTLRD-WKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 24 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDI 82
M +N ILGP S +E ++ L + YP + PKV F++KI P ++ G + D
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
Query: 83 --LKDKWSPALQIRTVLLSIQALLSAP 107
L+D W A + T+LL ++ ++ P
Sbjct: 98 HTLRD-WKRAYTMETLLLDLRKEMATP 123
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 30 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC----LDILKD 85
MI+GP ++ YE ++ L++ +YP A P VRF+TKI I+ + + +L
Sbjct: 49 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 107
Query: 86 KWSPALQIRTVLLSIQALL 104
KW + I+ VL ++ L+
Sbjct: 108 KWQNSYSIKVVLQELRRLM 126
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 30 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRI----CLDILKD 85
MILGP ++ YE ++ L++ +YP A P VRF+TKI ++ + + +L
Sbjct: 46 MILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA- 104
Query: 86 KWSPALQIRTVLLSIQALL 104
KW + I+ VL ++ L+
Sbjct: 105 KWQNSYSIKVVLQELRRLM 123
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 30 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC----LDILKD 85
MI+GP ++ YE ++ L++ +YP A P VRF+TKI I+ + + +L
Sbjct: 43 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 101
Query: 86 KWSPALQIRTVLLSIQALL 104
KW + I+ VL ++ L+
Sbjct: 102 KWQNSYSIKVVLQELRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 30 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC----LDILKD 85
MI+GP ++ YE ++ L++ +YP A P VRF+TKI I+ + + +L
Sbjct: 54 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 112
Query: 86 KWSPALQIRTVLLSIQALL 104
KW + I+ VL ++ L+
Sbjct: 113 KWQNSYSIKVVLQELRRLM 131
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 30 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC----LDILKD 85
MI+GP ++ YE ++ L++ +YP A P VRF+TKI I+ + + +L
Sbjct: 44 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 102
Query: 86 KWSPALQIRTVLLSIQALL 104
KW + I+ VL ++ L+
Sbjct: 103 KWQNSYSIKVVLQELRRLM 121
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 30 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRI----CLDILKD 85
MI+GP ++ YE ++ L++ +YP A P VRF+TKI ++ + + +L
Sbjct: 64 MIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA- 122
Query: 86 KWSPALQIRTVLLSIQALL 104
KW + I+ VL ++ L+
Sbjct: 123 KWQNSYSIKVVLQELRRLM 141
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 30 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRI----CLDILKD 85
MI+GP ++ YE ++ L++ +YP A P VRF+TKI ++ + + +L
Sbjct: 74 MIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA- 132
Query: 86 KWSPALQIRTVLLSIQALL 104
KW + I+ VL ++ L+
Sbjct: 133 KWQNSYSIKVVLQELRRLM 151
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 7 WFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 59
+ + T PG+ PS + Y ++I P + ++GG+ + ++L EY A+P
Sbjct: 152 FVIATEPGLGVRPSNE---YRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASP 201
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 7 WFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 59
+ + T PG+ PS + Y ++I P + ++GG+ + ++L EY A+P
Sbjct: 153 FVIATEPGLGVRPSNE---YRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASP 202
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 53
D +R + V I+GP +P GG+ L + L +E
Sbjct: 90 DLIREYRVAIMGPLTTPVGGGIRSLNVALRQE 121
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 53
D +R + V I GP +P GG+ +L + L +E
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRELNVALRQE 121
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 53
D +R + V I GP +P GG+ L + L +E
Sbjct: 88 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 119
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 53
D +R + V I GP +P GG+ L + L +E
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 53
D +R + V I GP +P GG+ L + L +E
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 53
D +R + V I GP +P GG+ L + L +E
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 53
D +R + V I GP +P GG+ L + L +E
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 53
D +R + V I GP +P GG+ L + L +E
Sbjct: 90 DLIREYRVAIKGPLTTPVGGGIRSLNVALRQE 121
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 11 TAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP 59
T PG+ P+ +Y ++I P + ++GG+ + +++ EY A P
Sbjct: 152 TEPGLGVRPA---TQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACP 197
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 22 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAP--KVRFLTKIYHP 70
D +R + + I GP +P GG+ L + L +E + VR+ T + P
Sbjct: 81 DVIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVXLRPVRYFTGVPSP 131
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 45 KLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 75
K+ P++ +VR + K++HPNI +L
Sbjct: 63 KIRQINPKDVERIKTEVRLMKKLHHPNIARL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,505,406
Number of Sequences: 62578
Number of extensions: 168291
Number of successful extensions: 540
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 132
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)