Query 032304
Match_columns 143
No_of_seqs 137 out of 1102
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 12:19:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 4.9E-55 1.1E-59 307.6 13.0 141 2-142 8-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 5.9E-54 1.3E-58 307.7 14.6 141 1-141 11-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 3.5E-50 7.6E-55 290.1 17.1 141 2-142 9-149 (152)
4 PLN00172 ubiquitin conjugating 100.0 5.9E-50 1.3E-54 287.6 16.5 141 1-141 7-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 1.4E-49 3E-54 273.6 11.9 140 1-140 10-149 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 3.5E-47 7.5E-52 268.6 13.0 140 1-140 11-164 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 4.7E-45 1E-49 254.5 13.3 141 2-142 11-158 (158)
8 PF00179 UQ_con: Ubiquitin-con 100.0 6.9E-45 1.5E-49 259.0 11.8 136 1-136 3-140 (140)
9 smart00212 UBCc Ubiquitin-conj 100.0 2.8E-43 6E-48 252.1 16.9 140 1-140 4-145 (145)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 1.2E-43 2.6E-48 252.9 14.3 136 1-136 5-141 (141)
11 KOG0418 Ubiquitin-protein liga 100.0 5.8E-44 1.3E-48 259.0 12.4 141 2-142 10-154 (200)
12 KOG0426 Ubiquitin-protein liga 100.0 1.5E-43 3.1E-48 244.1 11.7 139 1-139 10-162 (165)
13 KOG0421 Ubiquitin-protein liga 100.0 1.9E-41 4E-46 236.6 9.9 136 2-138 36-171 (175)
14 KOG0416 Ubiquitin-protein liga 100.0 1.4E-39 3E-44 232.8 10.1 133 11-143 16-150 (189)
15 KOG0422 Ubiquitin-protein liga 100.0 2.8E-38 6E-43 219.5 12.0 140 2-142 9-150 (153)
16 KOG0423 Ubiquitin-protein liga 100.0 8.1E-38 1.8E-42 224.5 6.0 142 1-142 16-157 (223)
17 KOG0420 Ubiquitin-protein liga 100.0 7E-36 1.5E-40 214.1 9.7 120 21-141 54-175 (184)
18 KOG0427 Ubiquitin conjugating 100.0 2.9E-31 6.3E-36 182.9 9.7 114 1-115 21-136 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 1.7E-30 3.7E-35 192.4 12.3 125 1-127 11-141 (244)
20 KOG0429 Ubiquitin-conjugating 100.0 6.9E-28 1.5E-32 179.1 12.1 137 1-138 25-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 2.6E-23 5.7E-28 157.0 8.1 105 1-108 17-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 3.4E-18 7.4E-23 149.6 5.1 110 3-112 859-979 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 7.9E-16 1.7E-20 135.0 9.0 105 2-106 289-404 (1101)
24 KOG0896 Ubiquitin-conjugating 99.4 3.8E-13 8.3E-18 93.5 6.5 83 24-106 38-123 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.7 7.5E-08 1.6E-12 68.0 7.3 67 40-106 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.5 4.1E-07 9E-12 61.9 5.5 89 44-133 13-107 (122)
27 PF05743 UEV: UEV domain; Int 98.3 1.2E-06 2.5E-11 61.0 5.8 78 24-106 32-117 (121)
28 KOG2391 Vacuolar sorting prote 97.7 0.00017 3.7E-09 57.7 6.9 80 23-107 51-138 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.3 0.049 1.1E-06 37.9 8.2 91 13-104 12-119 (122)
30 smart00591 RWD domain in RING 96.0 0.16 3.5E-06 33.4 9.5 27 40-66 39-65 (107)
31 PF14457 Prok-E2_A: Prokaryoti 95.2 0.026 5.5E-07 41.2 3.7 61 46-106 57-126 (162)
32 PF05773 RWD: RWD domain; Int 95.2 0.054 1.2E-06 36.0 5.1 45 22-66 27-73 (113)
33 PF08694 UFC1: Ubiquitin-fold 94.7 0.037 8E-07 39.4 3.1 54 44-97 77-135 (161)
34 KOG3357 Uncharacterized conser 83.1 1.7 3.6E-05 30.6 3.3 70 26-95 52-136 (167)
35 KOG0309 Conserved WD40 repeat- 80.1 6.9 0.00015 35.4 6.6 53 13-66 437-491 (1081)
36 PF14460 Prok-E2_D: Prokaryoti 76.6 3.6 7.9E-05 30.1 3.5 41 65-108 90-134 (175)
37 TIGR03737 PRTRC_B PRTRC system 72.6 4.9 0.00011 30.9 3.4 38 65-106 131-172 (228)
38 PF09765 WD-3: WD-repeat regio 72.0 4.2 9.2E-05 32.4 3.0 64 21-104 122-186 (291)
39 PF06113 BRE: Brain and reprod 70.6 10 0.00022 30.8 4.9 42 24-71 53-95 (333)
40 KOG4018 Uncharacterized conser 69.8 4.6 0.0001 30.7 2.6 20 43-62 50-69 (215)
41 PF06113 BRE: Brain and reprod 60.1 14 0.0003 30.1 3.9 29 40-69 304-332 (333)
42 cd00421 intradiol_dioxygenase 49.1 29 0.00063 24.5 3.7 26 40-65 64-90 (146)
43 cd07981 TAF12 TATA Binding Pro 44.9 51 0.0011 20.4 3.9 43 99-141 6-48 (72)
44 cd03457 intradiol_dioxygenase_ 42.2 41 0.00089 25.0 3.7 26 40-65 85-110 (188)
45 KOG1047 Bifunctional leukotrie 41.6 27 0.00059 30.5 2.9 30 36-66 247-279 (613)
46 KOG0177 20S proteasome, regula 36.8 7.7 0.00017 29.1 -0.9 30 75-104 135-164 (200)
47 cd03459 3,4-PCD Protocatechuat 35.2 63 0.0014 23.3 3.7 26 40-65 71-101 (158)
48 cd05845 Ig2_L1-CAM_like Second 35.2 86 0.0019 20.5 4.0 26 39-66 16-41 (95)
49 PF14455 Metal_CEHH: Predicted 34.9 96 0.0021 22.6 4.4 37 28-66 40-76 (177)
50 KOG4445 Uncharacterized conser 34.6 51 0.0011 26.7 3.3 25 42-66 45-69 (368)
51 PF03847 TFIID_20kDa: Transcri 32.9 95 0.0021 19.1 3.7 43 99-141 4-46 (68)
52 PF04881 Adeno_GP19K: Adenovir 30.2 92 0.002 22.0 3.6 31 10-40 31-63 (139)
53 KOG2851 Eukaryotic-type DNA pr 29.7 1.3E+02 0.0027 25.1 4.8 32 72-103 332-369 (412)
54 KOG0700 Protein phosphatase 2C 28.2 1.6E+02 0.0034 24.7 5.2 98 2-105 252-358 (390)
55 smart00803 TAF TATA box bindin 27.8 83 0.0018 19.1 2.8 30 112-141 19-48 (65)
56 PF12018 DUF3508: Domain of un 27.4 86 0.0019 24.7 3.5 29 112-140 238-266 (281)
57 PF12652 CotJB: CotJB protein; 27.0 1.4E+02 0.003 19.0 3.8 31 110-140 24-54 (78)
58 PRK05414 urocanate hydratase; 26.6 74 0.0016 27.7 3.1 29 113-141 280-308 (556)
59 PF03366 YEATS: YEATS family; 26.0 1.8E+02 0.004 18.5 5.9 43 25-69 2-44 (84)
60 TIGR01228 hutU urocanate hydra 25.9 77 0.0017 27.4 3.1 29 113-141 271-299 (545)
61 PF11333 DUF3135: Protein of u 25.8 1.4E+02 0.003 19.2 3.7 27 112-138 4-30 (83)
62 PF01175 Urocanase: Urocanase; 25.2 1.2E+02 0.0026 26.4 4.2 28 113-140 270-297 (546)
63 KOG3696 Aspartyl beta-hydroxyl 25.2 2.2E+02 0.0047 23.2 5.3 56 22-78 268-329 (334)
64 PF13950 Epimerase_Csub: UDP-g 24.6 57 0.0012 19.6 1.6 18 85-102 36-53 (62)
65 KOG0662 Cyclin-dependent kinas 24.5 59 0.0013 24.8 2.0 56 56-111 167-226 (292)
66 TIGR02423 protocat_alph protoc 23.4 1.2E+02 0.0027 22.6 3.6 25 40-64 95-124 (193)
67 smart00107 BTK Bruton's tyrosi 22.8 33 0.00071 18.6 0.3 15 67-81 7-22 (36)
68 PF00779 BTK: BTK motif; Inte 22.4 33 0.00071 18.1 0.2 15 67-81 2-17 (32)
69 PF00845 Gemini_BL1: Geminivir 21.9 1.9E+02 0.0042 22.7 4.4 48 22-70 100-156 (276)
70 PF04314 DUF461: Protein of un 21.6 1.3E+02 0.0027 20.1 3.0 27 26-52 77-103 (110)
71 COG2819 Predicted hydrolase of 20.6 1.6E+02 0.0035 23.2 3.8 31 36-66 15-47 (264)
72 cd03463 3,4-PCD_alpha Protocat 20.5 1.6E+02 0.0034 21.8 3.6 23 41-63 92-119 (185)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-55 Score=307.62 Aligned_cols=141 Identities=62% Similarity=1.013 Sum_probs=139.2
Q ss_pred cchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEec
Q 032304 2 CSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLD 81 (143)
Q Consensus 2 ~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl~ 81 (143)
|||+++++++++|+++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|+|+||||||+.+|+||+|
T Consensus 8 kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclD 87 (148)
T KOG0417|consen 8 KELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLD 87 (148)
T ss_pred HHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 032304 82 ILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 142 (143)
Q Consensus 82 ~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 142 (143)
+|++.|+|+++|..||.+|+++|.+||+++|++.+++++|+.|+++|.++||+||.+||+.
T Consensus 88 ILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 88 ILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred hhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999973
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-54 Score=307.66 Aligned_cols=141 Identities=48% Similarity=0.926 Sum_probs=138.6
Q ss_pred CcchhhhHhCCCCCeEEeeCCC-CcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceE
Q 032304 1 MCSLIVWFVDTAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC 79 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~ic 79 (143)
++||+.|++++++|+++.|.++ |+++|++.|.||.+||||||+|++.|.||++||++||+|+|.++|||||||++|+||
T Consensus 11 ~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vC 90 (153)
T COG5078 11 LKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVC 90 (153)
T ss_pred HHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCCh
Confidence 5899999999999999999887 999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 032304 80 LDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 141 (143)
Q Consensus 80 l~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 141 (143)
+|+|.+.|+|++++++||.+|+++|.+||.++|+|.||+++|++|+++|.++||+|+++||.
T Consensus 91 LdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 91 LDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred hHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.5e-50 Score=290.05 Aligned_cols=141 Identities=65% Similarity=1.098 Sum_probs=138.5
Q ss_pred cchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEec
Q 032304 2 CSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLD 81 (143)
Q Consensus 2 ~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl~ 81 (143)
+|++++++++++|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+++|.||++
T Consensus 9 ~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~ 88 (152)
T PTZ00390 9 KETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLD 88 (152)
T ss_pred HHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 032304 82 ILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 142 (143)
Q Consensus 82 ~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 142 (143)
+|.+.|+|++++++||.+|+++|.+|++++|+|.+||++|++|++.|.++||+|+++||+.
T Consensus 89 iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 89 ILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred cCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999973
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.9e-50 Score=287.56 Aligned_cols=141 Identities=50% Similarity=0.897 Sum_probs=138.2
Q ss_pred CcchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEe
Q 032304 1 MCSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 80 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl 80 (143)
++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|+||||+++|.||+
T Consensus 7 ~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl 86 (147)
T PLN00172 7 QKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICL 86 (147)
T ss_pred HHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 032304 81 DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 141 (143)
Q Consensus 81 ~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 141 (143)
+++.++|+|++++++||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 87 ~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 87 DILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred ccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-49 Score=273.58 Aligned_cols=140 Identities=41% Similarity=0.750 Sum_probs=136.4
Q ss_pred CcchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEe
Q 032304 1 MCSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 80 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl 80 (143)
|.++++++++|+.||++.|.++|+++|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.++.||||||.+|.+|+
T Consensus 10 mrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iCl 89 (152)
T KOG0419|consen 10 MRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICL 89 (152)
T ss_pred HHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 032304 81 DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 140 (143)
Q Consensus 81 ~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 140 (143)
|+|...|+|.|++.+||.+||+||.+||+++|+|.+||++|.+|+.+|.+++++.+.+.-
T Consensus 90 DiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 90 DILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred HHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999988754
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-47 Score=268.62 Aligned_cols=140 Identities=31% Similarity=0.678 Sum_probs=133.8
Q ss_pred CcchhhhHhCCCCCeEEeeCC-CCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceE
Q 032304 1 MCSLIVWFVDTAPGISASPSE-DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC 79 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~ic 79 (143)
+++|++|+++|.+|+.+...+ .|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.+++||||||++|++|
T Consensus 11 ~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vC 90 (171)
T KOG0425|consen 11 LKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVC 90 (171)
T ss_pred HHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEE
Confidence 368999999999999999865 5999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC-------------CcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 032304 80 LDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 140 (143)
Q Consensus 80 l~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 140 (143)
+++|. +.|.|.+++++||++|.+||.+||.++|+|.||++.|++|+++|+++++++|++.-
T Consensus 91 ISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~ 164 (171)
T KOG0425|consen 91 ISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQ 164 (171)
T ss_pred EEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99984 57999999999999999999999999999999999999999999999999998753
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-45 Score=254.46 Aligned_cols=141 Identities=32% Similarity=0.632 Sum_probs=135.0
Q ss_pred cchhhhHhCCCCCeEEeeCC-----CCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCC
Q 032304 2 CSLIVWFVDTAPGISASPSE-----DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 76 (143)
Q Consensus 2 ~e~~~l~~~~~~~i~v~p~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G 76 (143)
.|-+.|+++.+-|+++.|.. .|++.|+|.|.|+.||+||||.|.+++.||++||.+||+++|.+++||||||++|
T Consensus 11 eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsg 90 (158)
T KOG0424|consen 11 EERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSG 90 (158)
T ss_pred HHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCC
Confidence 36789999999999999974 4799999999999999999999999999999999999999999999999999999
Q ss_pred ceEecCCCCc--CCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 032304 77 RICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 142 (143)
Q Consensus 77 ~icl~~l~~~--W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 142 (143)
.|||++|.+. |+|+.+|.+||.+|+.||.+||..+|+|.||..+|.+|+.+|.++||.++++||.+
T Consensus 91 tVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 91 TVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred cEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 9999999754 99999999999999999999999999999999999999999999999999999964
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=6.9e-45 Score=258.97 Aligned_cols=136 Identities=51% Similarity=0.955 Sum_probs=126.3
Q ss_pred CcchhhhHhCCCCCeEEeeCCC-CcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceE
Q 032304 1 MCSLIVWFVDTAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC 79 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~ic 79 (143)
++||++++++++.|+.+.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|+||||+.+|.||
T Consensus 3 ~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ic 82 (140)
T PF00179_consen 3 QKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRIC 82 (140)
T ss_dssp HHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBG
T ss_pred HHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccch
Confidence 4799999999999999999886 999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC-cCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 032304 80 LDILKD-KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 136 (143)
Q Consensus 80 l~~l~~-~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~ 136 (143)
+++|.. .|+|++++.+||.+|+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 83 l~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 83 LDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp HGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred hhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999985 599999999999999999999999999999999999999999999999984
No 9
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.8e-43 Score=252.11 Aligned_cols=140 Identities=53% Similarity=0.958 Sum_probs=135.8
Q ss_pred CcchhhhHhCCCCCeEEeeCCC-CcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceE
Q 032304 1 MCSLIVWFVDTAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC 79 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~ic 79 (143)
++|++.+++++++|+.|.+.++ |+++|+++|.||++|||+||+|+++|.||++||.+||+|+|.++++||||+++|.||
T Consensus 4 ~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~ic 83 (145)
T smart00212 4 LKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEIC 83 (145)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEe
Confidence 4799999999999999999875 999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC-CcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 032304 80 LDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 140 (143)
Q Consensus 80 l~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 140 (143)
++++. ++|+|++++++||.+|+++|.+|+.++++|.+|+++|++|++.|+++|++++++++
T Consensus 84 l~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 84 LDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred hhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99998 89999999999999999999999999999999999999999999999999999975
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.2e-43 Score=252.91 Aligned_cols=136 Identities=53% Similarity=0.935 Sum_probs=132.4
Q ss_pred CcchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEe
Q 032304 1 MCSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 80 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl 80 (143)
++|++++++++++|+++.++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.++++||||+++|.||+
T Consensus 5 ~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl 84 (141)
T cd00195 5 QKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICL 84 (141)
T ss_pred HHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCch
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc-CCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q 032304 81 DILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 136 (143)
Q Consensus 81 ~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~ 136 (143)
+++... |+|++++++||.+|+++|.+|+.++|+|.+|+++|++|+++|.++|++|+
T Consensus 85 ~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 85 SILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred hhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999876 99999999999999999999999999999999999999999999999974
No 11
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-44 Score=258.97 Aligned_cols=141 Identities=44% Similarity=0.811 Sum_probs=136.7
Q ss_pred cchhhhHhCC---CCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeC-CCc
Q 032304 2 CSLIVWFVDT---APGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK-LGR 77 (143)
Q Consensus 2 ~e~~~l~~~~---~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~-~G~ 77 (143)
+|.+++.+++ ..||.+...++|+.+..+.|.||+|||||||+|.++|.+|++|||+||+|+|.|+||||||.+ +|.
T Consensus 10 ~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGa 89 (200)
T KOG0418|consen 10 REQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGA 89 (200)
T ss_pred HHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCccccc
Confidence 5778888887 789999999999999999999999999999999999999999999999999999999999996 999
Q ss_pred eEecCCCCcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 032304 78 ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 142 (143)
Q Consensus 78 icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 142 (143)
||+|++.+.|++++|++++|++||++|..|++.+|.+...+++|.+|++.|.+.||.|+..||++
T Consensus 90 ICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 90 ICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred chhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=244.13 Aligned_cols=139 Identities=35% Similarity=0.697 Sum_probs=134.3
Q ss_pred CcchhhhHhCCCCCeEEeeC-CCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceE
Q 032304 1 MCSLIVWFVDTAPGISASPS-EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC 79 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~ic 79 (143)
|+||++|..++|+||.+.|. ++|+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+|||||+.+|+||
T Consensus 10 m~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VC 89 (165)
T KOG0426|consen 10 MAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVC 89 (165)
T ss_pred HHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEE
Confidence 68999999999999999996 68999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC-------------CcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHH
Q 032304 80 LDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 139 (143)
Q Consensus 80 l~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~ 139 (143)
+++|. +.|+|.++++.||.++-+||.+||-++++|.+|+.++++|+++|.+.|+..++|.
T Consensus 90 ISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 90 ISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred EEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99884 5799999999999999999999999999999999999999999999999999875
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-41 Score=236.62 Aligned_cols=136 Identities=43% Similarity=0.756 Sum_probs=130.4
Q ss_pred cchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEec
Q 032304 2 CSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLD 81 (143)
Q Consensus 2 ~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl~ 81 (143)
+||..|.-...+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.||||||-.|.||+|
T Consensus 36 ~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLD 115 (175)
T KOG0421|consen 36 SELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLD 115 (175)
T ss_pred HHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHH
Confidence 47888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Q 032304 82 ILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 138 (143)
Q Consensus 82 ~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~ 138 (143)
+|++.|+..|++++||.+||++|-+||.++|+|..||+++. |.++|++.+.+.-++
T Consensus 116 ILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 116 ILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999888 999999998876554
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=232.79 Aligned_cols=133 Identities=37% Similarity=0.748 Sum_probs=126.7
Q ss_pred CCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeC-CCceEecCCCCcCCc
Q 032304 11 TAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK-LGRICLDILKDKWSP 89 (143)
Q Consensus 11 ~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l~~~W~p 89 (143)
--++..|...+++++++++.+.||.+|||+||++++++.+|++||++.|+|.|.++||||||++ +|.||+|.+++.|+|
T Consensus 16 ~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp 95 (189)
T KOG0416|consen 16 LMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSP 95 (189)
T ss_pred HhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhH
Confidence 3467788888899999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred ccCHHHHHHH-HHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 032304 90 ALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 143 (143)
Q Consensus 90 ~~~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~~ 143 (143)
.+.+..|+.. |-.||..||+.+|+|-+||.+|..++++|.+++|+|+++||+++
T Consensus 96 ~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 96 LYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence 9999999976 68899999999999999999999999999999999999999975
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-38 Score=219.52 Aligned_cols=140 Identities=33% Similarity=0.679 Sum_probs=132.3
Q ss_pred cchhhhHhCCCCCeE-EeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEe
Q 032304 2 CSLIVWFVDTAPGIS-ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 80 (143)
Q Consensus 2 ~e~~~l~~~~~~~i~-v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl 80 (143)
+||..|++++...+. +..++.|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||+.|.+|+
T Consensus 9 kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvCl 87 (153)
T KOG0422|consen 9 KELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCL 87 (153)
T ss_pred HHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceee
Confidence 799999999887664 5556789999999999 89999999999999999999999999999999999999999999999
Q ss_pred cCCC-CcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 032304 81 DILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 142 (143)
Q Consensus 81 ~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 142 (143)
.++. ++|.|++.+.++|+.|..++.+|+++.|++.|+|..|.+|+..|.++|.++++||+..
T Consensus 88 Piis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 88 PIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred eeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 9885 8999999999999999999999999999999999999999999999999999999853
No 16
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-38 Score=224.47 Aligned_cols=142 Identities=36% Similarity=0.631 Sum_probs=139.2
Q ss_pred CcchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEe
Q 032304 1 MCSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 80 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl 80 (143)
++|++.+..+||.||.|.+.++|+....+.|.||.||||++|+|++.+.+..+||.+||+-.|+|+||||||..||.||.
T Consensus 16 ~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICV 95 (223)
T KOG0423|consen 16 AKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICV 95 (223)
T ss_pred HHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCcccCHHHHHHHHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 032304 81 DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 142 (143)
Q Consensus 81 ~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 142 (143)
+.|...|+|..+|+.||..|+.+|..|++++.+|++|.+++.++.++|.+.||-++.-+|++
T Consensus 96 NtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 96 NTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred hhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999876
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-36 Score=214.07 Aligned_cols=120 Identities=35% Similarity=0.722 Sum_probs=113.5
Q ss_pred CCCcc--eEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEecCCCCcCCcccCHHHHHH
Q 032304 21 EDNMR--YFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 98 (143)
Q Consensus 21 ~~~~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~il~ 98 (143)
.+++. +.+.+|. |..+.|+||.|.|.+.+|+.||+.||+|+|+|+|||||||.+|.||+++|+++|+|+.++.+|+.
T Consensus 54 ~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~ 132 (184)
T KOG0420|consen 54 PDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIY 132 (184)
T ss_pred CcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHH
Confidence 34444 4999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 032304 99 SIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 141 (143)
Q Consensus 99 ~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 141 (143)
+|+.+|.+|++++|+|.+||+++++|++.|+..||.....++-
T Consensus 133 GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 133 GLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred HHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999877653
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-31 Score=182.94 Aligned_cols=114 Identities=33% Similarity=0.655 Sum_probs=106.3
Q ss_pred CcchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccc-eeeeeeCCCceE
Q 032304 1 MCSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRIC 79 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~HPni~~~G~ic 79 (143)
+|||.+|+.+||+|+.+. ..+|+.+|.+.+.|.+||.|+|.+|.+++.||+.||+..|.|.|..++ .||+|++||.||
T Consensus 21 qKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHIC 99 (161)
T KOG0427|consen 21 QKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHIC 99 (161)
T ss_pred HHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEE
Confidence 489999999999999998 678999999999999999999999999999999999999999999987 799999999999
Q ss_pred ecCCCCcCCcccCHHHHHHHHHhcccC-CCCCCcccH
Q 032304 80 LDILKDKWSPALQIRTVLLSIQALLSA-PNPDDPLSE 115 (143)
Q Consensus 80 l~~l~~~W~p~~~i~~il~~i~~ll~~-p~~~~p~n~ 115 (143)
+|+|.++|+|++++.+|+++|.+||.+ ..-..|.+.
T Consensus 100 L~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn 136 (161)
T KOG0427|consen 100 LDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDN 136 (161)
T ss_pred EEeecccCCcchhhHHHHHHHHHHHccCccccCCCcc
Confidence 999999999999999999999999987 555555543
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=192.38 Aligned_cols=125 Identities=23% Similarity=0.513 Sum_probs=107.2
Q ss_pred CcchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEe
Q 032304 1 MCSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 80 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl 80 (143)
+|||+.|+++|+++|.++|.++|+.+||.+|.||++|||+||.|+.+|.||.+||++||.|++.|+ +..+-.+.++||
T Consensus 11 ~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktntRLCL 88 (244)
T KOG0894|consen 11 QKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTNTRLCL 88 (244)
T ss_pred HHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecCceEEE
Confidence 489999999999999999999999999999999999999999999999999999999999999997 345556789999
Q ss_pred cCC---CCcCCcccCHHHHHHHHHhcccC--CCCCCcccHHHH-HHHHHCHHH
Q 032304 81 DIL---KDKWSPALQIRTVLLSIQALLSA--PNPDDPLSENIA-KHWKTNEAE 127 (143)
Q Consensus 81 ~~l---~~~W~p~~~i~~il~~i~~ll~~--p~~~~p~n~~a~-~~~~~~~~~ 127 (143)
++. .+.|+|+|++.+||.+|.++|.+ |...+....+.- +.|..+..+
T Consensus 89 SiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~~~kr~lA~~Sla 141 (244)
T KOG0894|consen 89 SISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSDQDKRMLAKSSLA 141 (244)
T ss_pred eccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHhhhh
Confidence 776 48999999999999999999987 666665544443 444444333
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.9e-28 Score=179.08 Aligned_cols=137 Identities=23% Similarity=0.408 Sum_probs=127.4
Q ss_pred CcchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCC--CCCeEEEeccceeeeeeC-CCc
Q 032304 1 MCSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM--AAPKVRFLTKIYHPNIDK-LGR 77 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~--~pP~v~f~t~i~HPni~~-~G~ 77 (143)
|+|+..+.+.+.+||+|.|+..|-+.|.++|++ ..|.|.||+|+|+|.+|++||. +.|+|.|.+.+|||+|.+ ++.
T Consensus 25 lAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ske 103 (258)
T KOG0429|consen 25 LAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKE 103 (258)
T ss_pred HHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccc
Confidence 478999999999999999999999999999995 6688999999999999999995 889999999999999997 899
Q ss_pred eEecCCCCcCCccc-CHHHHHHHHHhcccCCCCCCc--ccHHHHHHHHHCHHHHHHHHHHHHHH
Q 032304 78 ICLDILKDKWSPAL-QIRTVLLSIQALLSAPNPDDP--LSENIAKHWKTNEAEAVETAKEWTRL 138 (143)
Q Consensus 78 icl~~l~~~W~p~~-~i~~il~~i~~ll~~p~~~~p--~n~~a~~~~~~~~~~f~~~~~~~~~~ 138 (143)
+|+......|+-.. +|+++|..+|.+|++|+.+.+ .|++|+.+|++++++|.++|+++++.
T Consensus 104 Ldl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 104 LDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred eeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99988777798866 699999999999999998877 59999999999999999999999875
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.6e-23 Score=156.99 Aligned_cols=105 Identities=31% Similarity=0.629 Sum_probs=95.2
Q ss_pred CcchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEe
Q 032304 1 MCSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 80 (143)
Q Consensus 1 ~~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl 80 (143)
|||.++++ +|...+.+.|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+--|.+||+
T Consensus 17 mkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~nkKiCL 93 (314)
T KOG0428|consen 17 MKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVNKKICL 93 (314)
T ss_pred HHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeCceEEE
Confidence 68999998 999999999999999999999999999999999999999999999999999999997 344445678999
Q ss_pred cCCC---CcCCcccCHHHHHHHHHhcccC-CC
Q 032304 81 DILK---DKWSPALQIRTVLLSIQALLSA-PN 108 (143)
Q Consensus 81 ~~l~---~~W~p~~~i~~il~~i~~ll~~-p~ 108 (143)
++.. +.|.|+|+|++.|..|..+|-. |+
T Consensus 94 SISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 94 SISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred EecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 8874 8899999999999999999865 54
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.4e-18 Score=149.65 Aligned_cols=110 Identities=29% Similarity=0.630 Sum_probs=99.0
Q ss_pred chhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc--ceeeeeeCCCceEe
Q 032304 3 SLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK--IYHPNIDKLGRICL 80 (143)
Q Consensus 3 e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~HPni~~~G~icl 80 (143)
|++.|..+-+.||+|+..++.+....+.|.||.||||++|.|.|++.||++||..||.|...+. .++||.|++|+||+
T Consensus 859 ~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~ 938 (1101)
T KOG0895|consen 859 EWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCL 938 (1101)
T ss_pred HHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceeh
Confidence 5677788889999999999999999999999999999999999999999999999999999876 48999999999999
Q ss_pred cCCC-------CcCCcccCHHHHHHHHHhcccC--CCCCCc
Q 032304 81 DILK-------DKWSPALQIRTVLLSIQALLSA--PNPDDP 112 (143)
Q Consensus 81 ~~l~-------~~W~p~~~i~~il~~i~~ll~~--p~~~~p 112 (143)
++|. +-|+|+-++.++|.+||.|.-+ |..+++
T Consensus 939 s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 939 SLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred hhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence 9985 5799988999999999999754 555444
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.9e-16 Score=135.03 Aligned_cols=105 Identities=34% Similarity=0.705 Sum_probs=98.6
Q ss_pred cchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc---ceeeeeeCCCce
Q 032304 2 CSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK---IYHPNIDKLGRI 78 (143)
Q Consensus 2 ~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~---i~HPni~~~G~i 78 (143)
+|++.|.++.++|+++.|.+.++...++.|.||.||||++|+|.|+|.||..||..||.+.+++. -+.||.|.+|+|
T Consensus 289 ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKV 368 (1101)
T KOG0895|consen 289 KELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKV 368 (1101)
T ss_pred HHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceE
Confidence 58889999999999999999999999999999999999999999999999999999999999988 489999999999
Q ss_pred EecCCC-------CcCCcc-cCHHHHHHHHHhcccC
Q 032304 79 CLDILK-------DKWSPA-LQIRTVLLSIQALLSA 106 (143)
Q Consensus 79 cl~~l~-------~~W~p~-~~i~~il~~i~~ll~~ 106 (143)
|+++|- +.|+|. .++.++|..|+.++.+
T Consensus 369 cLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 369 CLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred EeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 999883 679998 6899999999999865
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.8e-13 Score=93.50 Aligned_cols=83 Identities=24% Similarity=0.452 Sum_probs=72.9
Q ss_pred cceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeC-CCceEecCC--CCcCCcccCHHHHHHHH
Q 032304 24 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK-LGRICLDIL--KDKWSPALQIRTVLLSI 100 (143)
Q Consensus 24 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~-~G~icl~~l--~~~W~p~~~i~~il~~i 100 (143)
+..|.+.|.||+.|+||+-+|.++|....+||..||+|+|.+++--..|+. +|.+.-..+ -.+|+-.+++..+|..+
T Consensus 38 l~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~l 117 (138)
T KOG0896|consen 38 LTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQL 117 (138)
T ss_pred EeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhh
Confidence 468999999999999999999999999999999999999999998888885 777764222 25899999999999999
Q ss_pred HhcccC
Q 032304 101 QALLSA 106 (143)
Q Consensus 101 ~~ll~~ 106 (143)
+.+|..
T Consensus 118 r~~m~~ 123 (138)
T KOG0896|consen 118 RKEMMS 123 (138)
T ss_pred hHHHHH
Confidence 876654
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.70 E-value=7.5e-08 Score=67.96 Aligned_cols=67 Identities=30% Similarity=0.653 Sum_probs=60.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEeccc---eeeeeeCCCceEe---cCCCCcCCcccCHHHHHHHHHhcccC
Q 032304 40 EGGVFKLELFLPEEYPMAAPKVRFLTKI---YHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSA 106 (143)
Q Consensus 40 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i---~HPni~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~ 106 (143)
.|+.+.++|.||++||..||.|....+. +=|||+.+|.+|+ ...-+.|.|.-.+.++|...+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999998665 6899999999999 66678999999999999999888874
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.1e-07 Score=61.86 Aligned_cols=89 Identities=18% Similarity=0.350 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCCCCCCeEEEecccee-eeeeCCCceEecCCC-CcCCcccCHHHHHHHHHhcccCC--CCCCcccHHHHH
Q 032304 44 FKLELFLPEEYPMAAPKVRFLTKIYH-PNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAP--NPDDPLSENIAK 119 (143)
Q Consensus 44 f~~~i~fp~~yP~~pP~v~f~t~i~H-Pni~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p--~~~~p~n~~a~~ 119 (143)
.-+.+.|++|||+.||.++-..++-. .-|-.+|.||+.++. ++|+.+++++.++++|-.++..- -...+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 34678899999999999987765432 233457999999985 78999999999999999998873 34555555443
Q ss_pred HHHH--CHHHHHHHHH
Q 032304 120 HWKT--NEAEAVETAK 133 (143)
Q Consensus 120 ~~~~--~~~~f~~~~~ 133 (143)
+|.. -.+.|+..++
T Consensus 92 ~~s~~qa~~sfksLv~ 107 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQ 107 (122)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4432 2233544444
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.35 E-value=1.2e-06 Score=61.02 Aligned_cols=78 Identities=26% Similarity=0.536 Sum_probs=54.9
Q ss_pred cceEEEEEECCCCCCCCCcEEE--EEEEcCCCCCCCCCeEEEeccce-----eeeeeCCCceEecCCCCcCCc-ccCHHH
Q 032304 24 MRYFNVMILGPTQSPYEGGVFK--LELFLPEEYPMAAPKVRFLTKIY-----HPNIDKLGRICLDILKDKWSP-ALQIRT 95 (143)
Q Consensus 24 ~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~yP~~pP~v~f~t~i~-----HPni~~~G~icl~~l~~~W~p-~~~i~~ 95 (143)
+....++|. -.|+|..|. +.|.+|.+||.+||.+....... +.+||.+|+|.+..|. +|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCCHHH
Confidence 444555554 458898885 67889999999999998775532 4499999999988776 7888 678999
Q ss_pred HHHHHHhcccC
Q 032304 96 VLLSIQALLSA 106 (143)
Q Consensus 96 il~~i~~ll~~ 106 (143)
++..|...|..
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999888764
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00017 Score=57.75 Aligned_cols=80 Identities=21% Similarity=0.442 Sum_probs=62.6
Q ss_pred CcceEEEEEECCCCCCCCCcEEE--EEEEcCCCCCCCCCeEEEeccc-----eeeeeeCCCceEecCCCCcCCc-ccCHH
Q 032304 23 NMRYFNVMILGPTQSPYEGGVFK--LELFLPEEYPMAAPKVRFLTKI-----YHPNIDKLGRICLDILKDKWSP-ALQIR 94 (143)
Q Consensus 23 ~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~yP~~pP~v~f~t~i-----~HPni~~~G~icl~~l~~~W~p-~~~i~ 94 (143)
+++...++|. ++|.|.+|. +.|.+.+.||..||.+.....- -|-+||.+|.|.|..|. +|.+ +.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 4555555554 678888776 6778999999999999666431 38999999999999997 7876 55788
Q ss_pred HHHHHHHhcccCC
Q 032304 95 TVLLSIQALLSAP 107 (143)
Q Consensus 95 ~il~~i~~ll~~p 107 (143)
.++..|...|.++
T Consensus 126 ~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 126 GLIQELIAAFSED 138 (365)
T ss_pred HHHHHHHHHhcCC
Confidence 8888888888763
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.26 E-value=0.049 Score=37.92 Aligned_cols=91 Identities=20% Similarity=0.380 Sum_probs=59.5
Q ss_pred CCeEEeeCCCCcceEEEEEEC--CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccee-------eeeeC-----CCce
Q 032304 13 PGISASPSEDNMRYFNVMILG--PTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH-------PNIDK-----LGRI 78 (143)
Q Consensus 13 ~~i~v~p~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H-------Pni~~-----~G~i 78 (143)
.|+..+...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|.+.+..+-.. |+-.. .|+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 35666665555566655 544 556779999999999999999999998877765321 11000 1221
Q ss_pred E--ecCCCCcCCccc-CHHHHHHHHHhcc
Q 032304 79 C--LDILKDKWSPAL-QIRTVLLSIQALL 104 (143)
Q Consensus 79 c--l~~l~~~W~p~~-~i~~il~~i~~ll 104 (143)
- .+.....|+|.. ++.+.|..|...|
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~~v~~~L 119 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLARVEHAL 119 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 1 111235799977 6888888887765
No 30
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.97 E-value=0.16 Score=33.39 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=22.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032304 40 EGGVFKLELFLPEEYPMAAPKVRFLTK 66 (143)
Q Consensus 40 ~gg~f~~~i~fp~~yP~~pP~v~f~t~ 66 (143)
..-.+.+++.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999987653
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.23 E-value=0.026 Score=41.22 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=48.1
Q ss_pred EEEEcCCCCCCCCCeEEEeccce---eeeeeCC-----CceEecCCC-CcCCcccCHHHHHHHHHhcccC
Q 032304 46 LELFLPEEYPMAAPKVRFLTKIY---HPNIDKL-----GRICLDILK-DKWSPALQIRTVLLSIQALLSA 106 (143)
Q Consensus 46 ~~i~fp~~yP~~pP~v~f~t~i~---HPni~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~ 106 (143)
+.|.|+.+||..+|.|.++.+.| +|+++.. ..+|+..-. ..|.+..++..+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56899999999999888777655 5777754 579985432 5799999999999999887753
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.21 E-value=0.054 Score=35.96 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=28.9
Q ss_pred CCcceEEEEEEC--CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032304 22 DNMRYFNVMILG--PTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK 66 (143)
Q Consensus 22 ~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 66 (143)
.+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.....
T Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 27 KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 344455666621 234445567899999999999999999987665
No 33
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.68 E-value=0.037 Score=39.43 Aligned_cols=54 Identities=30% Similarity=0.532 Sum_probs=24.7
Q ss_pred EEEEEEcCCCCCCCCCeEEEeccc-eeeeeeCCCceEecCCC-CcC---CcccCHHHHH
Q 032304 44 FKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILK-DKW---SPALQIRTVL 97 (143)
Q Consensus 44 f~~~i~fp~~yP~~pP~v~f~t~i-~HPni~~~G~icl~~l~-~~W---~p~~~i~~il 97 (143)
|.+++.+|..||..||.|..-.-- --.-.+..|+||++... .-| .|.++|...|
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 456677899999999999753211 01223456999998764 335 5666776654
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.11 E-value=1.7 Score=30.64 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=41.7
Q ss_pred eEEEEEECCCCCCCCCcE----------EEEEEEcCCCCCCCCCeEEEeccce-eeeeeCCCceEec-CCCCcCC---cc
Q 032304 26 YFNVMILGPTQSPYEGGV----------FKLELFLPEEYPMAAPKVRFLTKIY-HPNIDKLGRICLD-ILKDKWS---PA 90 (143)
Q Consensus 26 ~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~yP~~pP~v~f~t~i~-HPni~~~G~icl~-~l~~~W~---p~ 90 (143)
.|.-.=.-++||-|-|.+ |.+++.+|-.||...|.+..-.--- ---.+..|+||+. .+..-|. |.
T Consensus 52 dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn~pk 131 (167)
T KOG3357|consen 52 DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPK 131 (167)
T ss_pred cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhcCcc
Confidence 344334557888887743 5567778999999999886421100 0112345899984 4445574 34
Q ss_pred cCHHH
Q 032304 91 LQIRT 95 (143)
Q Consensus 91 ~~i~~ 95 (143)
.+|..
T Consensus 132 fgiah 136 (167)
T KOG3357|consen 132 FGIAH 136 (167)
T ss_pred hhHHH
Confidence 44444
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.05 E-value=6.9 Score=35.36 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=35.1
Q ss_pred CCeEEeeCCCCcceEEEEEECCCCCCCCCcE-EEEEEEcCCCCCC-CCCeEEEecc
Q 032304 13 PGISASPSEDNMRYFNVMILGPTQSPYEGGV-FKLELFLPEEYPM-AAPKVRFLTK 66 (143)
Q Consensus 13 ~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~-f~~~i~fp~~yP~-~pP~v~f~t~ 66 (143)
+.+.++-.+-.-....+.+-||-.-- .|-+ .++.|.||.+||. .+|+.+|..+
T Consensus 437 ~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 437 RNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred cccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34444433333456677777766443 3433 4788999999999 6789998865
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=76.62 E-value=3.6 Score=30.14 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=24.2
Q ss_pred cccee---eeeeCCCceEecCCCCcCCcccCHHHHHHHHHh-cccCCC
Q 032304 65 TKIYH---PNIDKLGRICLDILKDKWSPALQIRTVLLSIQA-LLSAPN 108 (143)
Q Consensus 65 t~i~H---Pni~~~G~icl~~l~~~W~p~~~i~~il~~i~~-ll~~p~ 108 (143)
|++|| +||+.+|+||++... .|.......+..... +|.++.
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~f 134 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPF 134 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCc
Confidence 45565 499999999997643 234433444555543 444443
No 37
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=72.60 E-value=4.9 Score=30.95 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=24.3
Q ss_pred ccceee---eeeCCCceEecCCCCcCCccc-CHHHHHHHHHhcccC
Q 032304 65 TKIYHP---NIDKLGRICLDILKDKWSPAL-QIRTVLLSIQALLSA 106 (143)
Q Consensus 65 t~i~HP---ni~~~G~icl~~l~~~W~p~~-~i~~il~~i~~ll~~ 106 (143)
|++||. ||+++|+||++... .|.. ++.+ +......|.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhC
Confidence 445654 89999999997654 4444 4555 6666555543
No 38
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=72.05 E-value=4.2 Score=32.40 Aligned_cols=64 Identities=27% Similarity=0.489 Sum_probs=40.6
Q ss_pred CCCcceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccceeeeeeCCCceEecCCCCcCCc-ccCHHHHHHH
Q 032304 21 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSP-ALQIRTVLLS 99 (143)
Q Consensus 21 ~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~W~p-~~~i~~il~~ 99 (143)
++++....+.+.. +.-...++|.++.+||.++|.+...-++ .+...|.+ ..++.+++..
T Consensus 122 d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~--------------~~~~~w~~~~ssL~~v~~q 181 (291)
T PF09765_consen 122 DDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI--------------PFSLSWSPSQSSLKDVVQQ 181 (291)
T ss_dssp -CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS---------------HHHHHHCHT-SHHHHHHH
T ss_pred CCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc--------------chhhhhcccccCHHHHHHH
Confidence 4677888888872 2255678999999999999976433322 11236887 5577777665
Q ss_pred HHhcc
Q 032304 100 IQALL 104 (143)
Q Consensus 100 i~~ll 104 (143)
.+..+
T Consensus 182 F~~~l 186 (291)
T PF09765_consen 182 FQEAL 186 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=70.57 E-value=10 Score=30.84 Aligned_cols=42 Identities=26% Similarity=0.588 Sum_probs=34.2
Q ss_pred cceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEe-ccceeee
Q 032304 24 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPN 71 (143)
Q Consensus 24 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~-t~i~HPn 71 (143)
...+...| ||.|...+-+|.|...+|..||.+.|. ..-|+|.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 44566666 699999999999999999999999996 3347773
No 40
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=69.78 E-value=4.6 Score=30.74 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=18.6
Q ss_pred EEEEEEEcCCCCCCCCCeEE
Q 032304 43 VFKLELFLPEEYPMAAPKVR 62 (143)
Q Consensus 43 ~f~~~i~fp~~yP~~pP~v~ 62 (143)
.+.+.+.++.+||..+|.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999993
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=60.10 E-value=14 Score=30.07 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEecccee
Q 032304 40 EGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69 (143)
Q Consensus 40 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 69 (143)
.+-.|-++|.+|..||...|+++|.+- +|
T Consensus 304 ~~F~flvHi~Lp~~FP~~qP~ltlqS~-yH 332 (333)
T PF06113_consen 304 GDFTFLVHISLPIQFPKDQPSLTLQSV-YH 332 (333)
T ss_pred CCeEEEEEEeccCCCCCcCCeEEEEee-cc
Confidence 344578899999999999999999873 44
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=49.13 E-value=29 Score=24.51 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=22.5
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeEEEec
Q 032304 40 EGGVFKLELFLPEEYP-MAAPKVRFLT 65 (143)
Q Consensus 40 ~gg~f~~~i~fp~~yP-~~pP~v~f~t 65 (143)
+.|.|.|.-.+|-.|| ..||.|-|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4599999999999999 9999987663
No 43
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=44.91 E-value=51 Score=20.36 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=34.4
Q ss_pred HHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 032304 99 SIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 141 (143)
Q Consensus 99 ~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 141 (143)
.|+.++..-++..-+.++|...+.+=.+.|...+-+-+.++|+
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666778899999999999899999988888887775
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=42.20 E-value=41 Score=25.02 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEec
Q 032304 40 EGGVFKLELFLPEEYPMAAPKVRFLT 65 (143)
Q Consensus 40 ~gg~f~~~i~fp~~yP~~pP~v~f~t 65 (143)
+.|.|.|+=.+|--||.++|.|-|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 56999999999999999999987764
No 45
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=41.64 E-value=27 Score=30.52 Aligned_cols=30 Identities=37% Similarity=0.755 Sum_probs=25.6
Q ss_pred CCCCCCcEEEEEEEcCCCCCC---CCCeEEEecc
Q 032304 36 QSPYEGGVFKLELFLPEEYPM---AAPKVRFLTK 66 (143)
Q Consensus 36 ~tpy~gg~f~~~i~fp~~yP~---~pP~v~f~t~ 66 (143)
.+||.=|.|-+ +.+|++||+ +-|-++|.|+
T Consensus 247 ~GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 247 FGPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred cCCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 36788899887 568999999 6799999998
No 46
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.78 E-value=7.7 Score=29.08 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCceEecCCCCcCCcccCHHHHHHHHHhcc
Q 032304 75 LGRICLDILKDKWSPALQIRTVLLSIQALL 104 (143)
Q Consensus 75 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll 104 (143)
.+.+|++++...|+|.+|+++-+.-++.++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 467999999999999999887766555543
No 47
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.24 E-value=63 Score=23.29 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=22.3
Q ss_pred CCcEEEEEEEcCCCCC-----CCCCeEEEec
Q 032304 40 EGGVFKLELFLPEEYP-----MAAPKVRFLT 65 (143)
Q Consensus 40 ~gg~f~~~i~fp~~yP-----~~pP~v~f~t 65 (143)
+.|.|.|+-.+|--|| ..||.|-|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 3589999999999999 8999987764
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=35.22 E-value=86 Score=20.54 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=20.7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032304 39 YEGGVFKLELFLPEEYPMAAPKVRFLTK 66 (143)
Q Consensus 39 y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 66 (143)
-||..+.|...-|..|| .|+|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777788888899999 599998865
No 49
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=34.88 E-value=96 Score=22.63 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=25.2
Q ss_pred EEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032304 28 NVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK 66 (143)
Q Consensus 28 ~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 66 (143)
.+.+.-|.-+|= --...++|.| .||-..||.|.|+.+
T Consensus 40 ~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 40 DVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred EEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 344443444552 2234777788 789999999999987
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.59 E-value=51 Score=26.73 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.2
Q ss_pred cEEEEEEEcCCCCCCCCCeEEEecc
Q 032304 42 GVFKLELFLPEEYPMAAPKVRFLTK 66 (143)
Q Consensus 42 g~f~~~i~fp~~yP~~pP~v~f~t~ 66 (143)
-.+.+.+..+..||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677889999999999999999876
No 51
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=32.87 E-value=95 Score=19.12 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=30.1
Q ss_pred HHHhcccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 032304 99 SIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 141 (143)
Q Consensus 99 ~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 141 (143)
.|+.++...++...+.+++.+++.+=.+.|...+-..+.+.|+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777778888899999999888888888888877776653
No 52
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=30.17 E-value=92 Score=21.97 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCCCeEEee--CCCCcceEEEEEECCCCCCCC
Q 032304 10 DTAPGISASP--SEDNMRYFNVMILGPTQSPYE 40 (143)
Q Consensus 10 ~~~~~i~v~p--~~~~~~~w~~~i~Gp~~tpy~ 40 (143)
|+..+-.+.+ .+.|...|.+++.|++|++..
T Consensus 31 NKt~~~~~~~~WqPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 31 NKTWNNTVYPTWQPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred ccccCceeeeeccCCCCcceEEEEECCCCccee
Confidence 3444444444 357888899999999988763
No 53
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=29.66 E-value=1.3e+02 Score=25.11 Aligned_cols=32 Identities=31% Similarity=0.654 Sum_probs=24.5
Q ss_pred ee-CCCceEecCCC---CcCCccc--CHHHHHHHHHhc
Q 032304 72 ID-KLGRICLDILK---DKWSPAL--QIRTVLLSIQAL 103 (143)
Q Consensus 72 i~-~~G~icl~~l~---~~W~p~~--~i~~il~~i~~l 103 (143)
|. .+|+||..+-- +...|.. +|.+++..|.++
T Consensus 332 VHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 332 VHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred ccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 44 48999986542 5677765 799999999988
No 54
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=28.20 E-value=1.6e+02 Score=24.71 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=58.8
Q ss_pred cchhhhHhCCCCCeEEeeCCCCcceEEEEEECCCCCCCCCcEEE---------EEEEcCCCCCCCCCeEEEeccceeeee
Q 032304 2 CSLIVWFVDTAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFK---------LELFLPEEYPMAAPKVRFLTKIYHPNI 72 (143)
Q Consensus 2 ~e~~~l~~~~~~~i~v~p~~~~~~~w~~~i~Gp~~tpy~gg~f~---------~~i~fp~~yP~~pP~v~f~t~i~HPni 72 (143)
.|.++++..+|..-.+..... -...+.|+ |.. .+-.+.++ +. .|...|++.||-++..+.|.|--+
T Consensus 252 ~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~-vsR-AfGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP~i~~HrL 326 (390)
T KOG0700|consen 252 DEVRRIRSEHPDDPHIVVNKH--WRVKGILQ-VSR-AFGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEPSITHHKL 326 (390)
T ss_pred HHHHHHHHhCCCCcceEeecc--ceeeEEEE-eee-eccceeecchhhccchhHh-hcCCCCCCCCCceeccceEEEEEc
Confidence 477888888875544443222 23455666 332 34444444 12 688899999999999999998888
Q ss_pred eCCCceEecCCCCcCCcccCHHHHHHHHHhccc
Q 032304 73 DKLGRICLDILKDKWSPALQIRTVLLSIQALLS 105 (143)
Q Consensus 73 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 105 (143)
.++.++-+=....-|. -++=++++.-+...+.
T Consensus 327 ~p~DkFLIlASDGLwE-~lsNeeaV~lV~~~i~ 358 (390)
T KOG0700|consen 327 TPNDKFLILASDGLWE-YLSNEEAVSLVHEFIS 358 (390)
T ss_pred CCCCeEEEEeccchhh-hcChHHHHHHHHHhhc
Confidence 8876654311122243 2344555555555544
No 55
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=27.79 E-value=83 Score=19.12 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=25.4
Q ss_pred cccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 032304 112 PLSENIAKHWKTNEAEAVETAKEWTRLYAS 141 (143)
Q Consensus 112 p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 141 (143)
.++.+++..+.++-+.+.+.+-+-+.+|+.
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~ 48 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMR 48 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998888888887764
No 56
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=27.43 E-value=86 Score=24.68 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=25.4
Q ss_pred cccHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 032304 112 PLSENIAKHWKTNEAEAVETAKEWTRLYA 140 (143)
Q Consensus 112 p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 140 (143)
..+.+|+..|.+|++.|...+.+.+++.+
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 36788999999999999999999988754
No 57
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=27.04 E-value=1.4e+02 Score=18.97 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=25.0
Q ss_pred CCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 032304 110 DDPLSENIAKHWKTNEAEAVETAKEWTRLYA 140 (143)
Q Consensus 110 ~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 140 (143)
.+|.+.+|.+.|.+=.+...+..+++.++|.
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678899999998877778888888887764
No 58
>PRK05414 urocanate hydratase; Provisional
Probab=26.56 E-value=74 Score=27.67 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 032304 113 LSENIAKHWKTNEAEAVETAKEWTRLYAS 141 (143)
Q Consensus 113 ~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 141 (143)
..+|+.++..+|++.|++.|++...++..
T Consensus 280 t~ee~~~lr~~dp~~~~~~~~~Sm~rhv~ 308 (556)
T PRK05414 280 TLEEAAELRAEDPEEFVKAAKASMARHVE 308 (556)
T ss_pred CHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 34788888899999999999999887753
No 59
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=25.97 E-value=1.8e+02 Score=18.53 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=30.2
Q ss_pred ceEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccee
Q 032304 25 RYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 69 (143)
Q Consensus 25 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 69 (143)
.+|.+-+.|+.+.--..-+=++...+.++|+. |...+..+-|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 47999999988865556677788999999887 77777766443
No 60
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=25.86 E-value=77 Score=27.44 Aligned_cols=29 Identities=17% Similarity=0.063 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 032304 113 LSENIAKHWKTNEAEAVETAKEWTRLYAS 141 (143)
Q Consensus 113 ~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 141 (143)
..+|+.++..+|++.|++.|++...++..
T Consensus 271 t~ee~~~lr~~dp~~~~~~~~~Sm~rhv~ 299 (545)
T TIGR01228 271 TVEDADKLRQEEPEAYVKAAKQSMAKHVR 299 (545)
T ss_pred CHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 34788888899999999999999887653
No 61
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=25.79 E-value=1.4e+02 Score=19.20 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHCHHHHHHHHHHHHHH
Q 032304 112 PLSENIAKHWKTNEAEAVETAKEWTRL 138 (143)
Q Consensus 112 p~n~~a~~~~~~~~~~f~~~~~~~~~~ 138 (143)
|-..+...+.++|+++|....++..+.
T Consensus 4 p~FD~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 4 PDFDELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred CCHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 445667788999999999888877664
No 62
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=25.22 E-value=1.2e+02 Score=26.36 Aligned_cols=28 Identities=14% Similarity=-0.034 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 032304 113 LSENIAKHWKTNEAEAVETAKEWTRLYA 140 (143)
Q Consensus 113 ~n~~a~~~~~~~~~~f~~~~~~~~~~~a 140 (143)
.-+|+.++..+|++.|++.+++...++.
T Consensus 270 t~eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 270 TFEEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp -HHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 3477788888999999999999988764
No 63
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=25.21 E-value=2.2e+02 Score=23.24 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=35.0
Q ss_pred CCcceEEEEEECCCCCCCCCcE-EEEEEEcC-----CCCCCCCCeEEEeccceeeeeeCCCce
Q 032304 22 DNMRYFNVMILGPTQSPYEGGV-FKLELFLP-----EEYPMAAPKVRFLTKIYHPNIDKLGRI 78 (143)
Q Consensus 22 ~~~~~w~~~i~Gp~~tpy~gg~-f~~~i~fp-----~~yP~~pP~v~f~t~i~HPni~~~G~i 78 (143)
.++..-...+-|-+.. |+-|. .-++..|= ++=+...|+|.|.-.+|||||.+.-+.
T Consensus 268 ~~p~~~~l~Vg~E~q~-w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~~r~ 329 (334)
T KOG3696|consen 268 KSPSGCELVVGGEPQC-WAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPAERQ 329 (334)
T ss_pred CCCCCceEEEcCcccc-ccccceeEeechhhcccccCCCcccCceEEEEEeccCccccccccc
Confidence 3444455556555544 44444 44445443 445667899999999999999864443
No 64
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=24.62 E-value=57 Score=19.57 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=11.0
Q ss_pred CcCCcccCHHHHHHHHHh
Q 032304 85 DKWSPALQIRTVLLSIQA 102 (143)
Q Consensus 85 ~~W~p~~~i~~il~~i~~ 102 (143)
-+|.|.++|.++|...-.
T Consensus 36 LgW~p~~~L~~~i~~~w~ 53 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWN 53 (62)
T ss_dssp C----SSSHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHH
Confidence 379999999999877544
No 65
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=24.50 E-value=59 Score=24.81 Aligned_cols=56 Identities=29% Similarity=0.420 Sum_probs=38.5
Q ss_pred CCCCeEEEeccceeeeeeC--CCceEecCCCCcC--CcccCHHHHHHHHHhcccCCCCCC
Q 032304 56 MAAPKVRFLTKIYHPNIDK--LGRICLDILKDKW--SPALQIRTVLLSIQALLSAPNPDD 111 (143)
Q Consensus 56 ~~pP~v~f~t~i~HPni~~--~G~icl~~l~~~W--~p~~~i~~il~~i~~ll~~p~~~~ 111 (143)
..||.|.|-.++|.-.||- .|-|--.+...+| -|.-.+.+-|..|..++..|+.+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4799999999999999883 4544334444444 455567777777777777766443
No 66
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=23.43 E-value=1.2e+02 Score=22.58 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=20.0
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeEEEe
Q 032304 40 EGGVFKLELFLPEEYPM-----AAPKVRFL 64 (143)
Q Consensus 40 ~gg~f~~~i~fp~~yP~-----~pP~v~f~ 64 (143)
+.|.|.|+-..|-.||. .||.|-|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 45889999999999998 77766544
No 67
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=22.79 E-value=33 Score=18.57 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=11.4
Q ss_pred ceeeeeeCCCc-eEec
Q 032304 67 IYHPNIDKLGR-ICLD 81 (143)
Q Consensus 67 i~HPni~~~G~-icl~ 81 (143)
-|||.+..+|+ .|-.
T Consensus 7 ~yHP~~~~~G~W~CC~ 22 (36)
T smart00107 7 KYHPSFWVDGKWLCCQ 22 (36)
T ss_pred ccCCCceeCCeEccCC
Confidence 38999998887 6653
No 68
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=22.38 E-value=33 Score=18.07 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=9.4
Q ss_pred ceeeeeeCCCc-eEec
Q 032304 67 IYHPNIDKLGR-ICLD 81 (143)
Q Consensus 67 i~HPni~~~G~-icl~ 81 (143)
-|||.+..+|+ .|-.
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999998777 6654
No 69
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=21.91 E-value=1.9e+02 Score=22.73 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=32.6
Q ss_pred CCcceEEEEEECCCCCCCCC----cEEEEEEEcC-----CCCCCCCCeEEEeccceee
Q 032304 22 DNMRYFNVMILGPTQSPYEG----GVFKLELFLP-----EEYPMAAPKVRFLTKIYHP 70 (143)
Q Consensus 22 ~~~~~w~~~i~Gp~~tpy~g----g~f~~~i~fp-----~~yP~~pP~v~f~t~i~HP 70 (143)
.|..-|.+... ..+|.-.. ..|+.++.+. -+-||++|+|+.+++-|..
T Consensus 100 KDp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 100 KDPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 45556777766 44454333 3456666665 6889999999999986643
No 70
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=21.57 E-value=1.3e+02 Score=20.05 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=22.2
Q ss_pred eEEEEEECCCCCCCCCcEEEEEEEcCC
Q 032304 26 YFNVMILGPTQSPYEGGVFKLELFLPE 52 (143)
Q Consensus 26 ~w~~~i~Gp~~tpy~gg~f~~~i~fp~ 52 (143)
-.|+.+.|+...+=.|..+.++|.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 478999999999999999999999865
No 71
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.61 E-value=1.6e+02 Score=23.22 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=27.1
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCC--CeEEEecc
Q 032304 36 QSPYEGGVFKLELFLPEEYPMAA--PKVRFLTK 66 (143)
Q Consensus 36 ~tpy~gg~f~~~i~fp~~yP~~p--P~v~f~t~ 66 (143)
.+.+.|-.|++.|..|.+||-.- |.|.|+..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 36789999999999999999877 99998864
No 72
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.45 E-value=1.6e+02 Score=21.85 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=18.3
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeEEE
Q 032304 41 GGVFKLELFLPEEYPM-----AAPKVRF 63 (143)
Q Consensus 41 gg~f~~~i~fp~~yP~-----~pP~v~f 63 (143)
.|.|.|+-.+|--||. .||.|-|
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~ 119 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINV 119 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEE
Confidence 4889999999999995 6666543
Done!